BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030615
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9XFB0|YAB2_ARATH Putative axial regulator YABBY 2 OS=Arabidopsis thaliana GN=YAB2
PE=2 SV=1
Length = 184
Score = 203 bits (516), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 111/171 (64%), Positives = 126/171 (73%), Gaps = 14/171 (8%)
Query: 11 FLGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQ---AVPL-QD--PQKQHINLEDSIT 64
L VSVP +SLF +VTVRCGHC NLL++N+ +L A P+ QD P +QH
Sbjct: 21 ILAVSVPYASLFTLVTVRCGHCTNLLSLNIGVSLHQTSAPPIHQDLQPHRQHTT-SLVTR 79
Query: 65 KDCGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDI 124
KDC SSS+ S E + E PRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKA NP+I
Sbjct: 80 KDCASSSRSTNNLS--ENIDREAPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKACNPEI 137
Query: 125 SHREAFSTAAKNWAHFPHIHFGLKLDGNKQAK-LDKAAAYAEGTQKSNGFY 174
SHREAFSTAAKNWAHFPHIHFGLKLDGNK+ K LD++ A QKSNG+Y
Sbjct: 138 SHREAFSTAAKNWAHFPHIHFGLKLDGNKKGKQLDQSVA----GQKSNGYY 184
>sp|Q8GW46|YAB5_ARATH Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
Length = 164
Score = 180 bits (456), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 100/164 (60%), Positives = 115/164 (70%), Gaps = 13/164 (7%)
Query: 1 MATNVLVFL------FFLGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQK 54
MAT L ++ L V+VPCSSLF+IVTVRCGHC NL +VNM +ALQ+ L P
Sbjct: 6 MATEQLCYIPCNFCNIILAVNVPCSSLFDIVTVRCGHCTNLWSVNMAAALQS--LSRPNF 63
Query: 55 QHINLEDSITKDCGSSSKCN-KFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEE 113
Q N + GSSS+ + K S T R+ RPPEKRQRVPSAYN+FIKEE
Sbjct: 64 QATNYA---VPEYGSSSRSHTKIPSRISTRTITEQRIVN-RPPEKRQRVPSAYNQFIKEE 119
Query: 114 IQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKL 157
IQRIKA+NPDISHREAFSTAAKNWAHFPHIHFGL L+ NKQAK+
Sbjct: 120 IQRIKANNPDISHREAFSTAAKNWAHFPHIHFGLMLESNKQAKI 163
>sp|Q10FZ7|YAB2_ORYSJ Protein YABBY 2 OS=Oryza sativa subsp. japonica GN=YAB2 PE=2 SV=1
Length = 186
Score = 166 bits (420), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 93/168 (55%), Positives = 112/168 (66%), Gaps = 8/168 (4%)
Query: 11 FLGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP----LQDPQKQHINLEDSITKD 66
VSVP +S+ NIVTVRCGHC +LL+VN+ +QA+P LQD K H +
Sbjct: 23 IFAVSVPSNSMLNIVTVRCGHCTSLLSVNLRGLVQALPAEDHLQDNLKMHNMSFRENYSE 82
Query: 67 CGSSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISH 126
GSSS+ + F ++++T M +RPPEKRQRVPSAYNRFIKEEI+RIKA+NPDISH
Sbjct: 83 YGSSSRYGRVPMMF--SKNDTEHMLHVRPPEKRQRVPSAYNRFIKEEIRRIKANNPDISH 140
Query: 127 REAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAEGTQKSNGFY 174
REAFSTAAKNWAHFP+IHFGL KLD+A A QK Y
Sbjct: 141 REAFSTAAKNWAHFPNIHFGLG-SHESSKKLDEAIG-APSPQKVQRLY 186
>sp|O22152|YAB1_ARATH Axial regulator YABBY 1 OS=Arabidopsis thaliana GN=YAB1 PE=1 SV=1
Length = 229
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/182 (51%), Positives = 107/182 (58%), Gaps = 18/182 (9%)
Query: 11 FLGVSVPCSSLFNIVTVRCGHCANLLNVNMVS----ALQAVPLQDPQKQHINLEDSIT-- 64
L V+VP +SLF VTVRCG C NLL+VNM S A + LQ + N +D +
Sbjct: 36 ILAVNVPYTSLFKTVTVRCGCCTNLLSVNMRSYVLPASNQLQLQLGPHSYFNPQDILEEL 95
Query: 65 KDCGSSS---------KCNKFSSAFET-AEHETPRMPPI-RPPEKRQRVPSAYNRFIKEE 113
+D S+ N S + +HE P+ PP+ RPPEKRQRVPSAYNRFIKEE
Sbjct: 96 RDAPSNMNMMMMNQHPTMNDIPSFMDLHQQHEIPKAPPVNRPPEKRQRVPSAYNRFIKEE 155
Query: 114 IQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDKAAAYAEGTQ-KSNG 172
IQRIKA NPDISHREAFS AAKNWAHFPHIHFGL D K + E G
Sbjct: 156 IQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLVPDNQPVKKTNMPQQEGEDNMVMKEG 215
Query: 173 FY 174
FY
Sbjct: 216 FY 217
>sp|Q2QM17|YAB6_ORYSJ Protein YABBY 6 OS=Oryza sativa subsp. japonica GN=YAB6 PE=2 SV=1
Length = 207
Score = 149 bits (375), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/188 (47%), Positives = 108/188 (57%), Gaps = 27/188 (14%)
Query: 11 FLGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP-LQDPQKQHINLEDSITKDCGS 69
L VSVP +S+ NIVTVRCGHC NLL+VN+ + + P LQD H +L++S C
Sbjct: 22 ILAVSVPGNSMLNIVTVRCGHCTNLLSVNLRGLMHSAPALQD--HHHHHLQESGLSGCFR 79
Query: 70 SSKCNKFSSAFETAEHETPRMPPI--------------------RPPEKRQRVPSAYNRF 109
+ R+PP RPPEKRQRVPSAYNRF
Sbjct: 80 DQSGYPEFGFSAASSSSKLRLPPAAAAMVSYSQQNQQLEQALHARPPEKRQRVPSAYNRF 139
Query: 110 IKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLK---LDGNKQAKLDKAAAYAEG 166
IKEEI+RIKA+NPDISHREAFSTAAKNWAH+P+IHFGL G K +D A
Sbjct: 140 IKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGLSPGHEGGKKLVDVDPIPT-APS 198
Query: 167 TQKSNGFY 174
++K GFY
Sbjct: 199 SKKIQGFY 206
>sp|Q0JBF0|YAB5_ORYSJ Protein YABBY 5 OS=Oryza sativa subsp. japonica GN=YAB5 PE=2 SV=1
Length = 266
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 106/205 (51%), Gaps = 41/205 (20%)
Query: 11 FLGVSVPCSSLFNIVTVRCGHCANLLNVNM--------VSALQAVP----LQDPQKQHIN 58
L V VPCSSLF VTVRCGHCANLL+VN+ S +P L P H
Sbjct: 42 ILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGL 101
Query: 59 LED-----------------------SITKDCGSSSKCNKFSSAFETAEHETPRMPPIRP 95
L++ S C +++ +SA A P+ P P
Sbjct: 102 LDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAP 161
Query: 96 -----PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD 150
EKRQRVPSAYNRFIK+EIQRIKASNPDI+HREAFS AAKNWAHFPHIHFGL D
Sbjct: 162 SANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPD 221
Query: 151 -GNKQAKLDKAAAYAEGTQKSNGFY 174
G K+ + E +G Y
Sbjct: 222 QGLKKTGIQSQDGAGECMLFKDGLY 246
>sp|Q01JG2|YAB5_ORYSI Protein YABBY 5 OS=Oryza sativa subsp. indica GN=YAB5 PE=2 SV=2
Length = 266
Score = 147 bits (372), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/205 (44%), Positives = 106/205 (51%), Gaps = 41/205 (20%)
Query: 11 FLGVSVPCSSLFNIVTVRCGHCANLLNVNM--------VSALQAVP----LQDPQKQHIN 58
L V VPCSSLF VTVRCGHCANLL+VN+ S +P L P H
Sbjct: 42 ILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAAASTANQLPFGQALLSPTSPHGL 101
Query: 59 LED-----------------------SITKDCGSSSKCNKFSSAFETAEHETPRMPPIRP 95
L++ S C +++ +SA A P+ P P
Sbjct: 102 LDEVPSFQAPASLMTEQASPNVSSITSSNSSCANNAPATSMASAANKATQREPQQPKNAP 161
Query: 96 -----PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD 150
EKRQRVPSAYNRFIK+EIQRIKASNPDI+HREAFS AAKNWAHFPHIHFGL D
Sbjct: 162 SANRTSEKRQRVPSAYNRFIKDEIQRIKASNPDITHREAFSAAAKNWAHFPHIHFGLMPD 221
Query: 151 -GNKQAKLDKAAAYAEGTQKSNGFY 174
G K+ + E +G Y
Sbjct: 222 QGLKKTGIQSQDGAGECMLFKDGLY 246
>sp|Q7XIM7|YAB1_ORYSJ Protein YABBY 1 OS=Oryza sativa subsp. japonica GN=YAB1 PE=2 SV=1
Length = 169
Score = 147 bits (370), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 74/139 (53%), Positives = 95/139 (68%)
Query: 11 FLGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLEDSITKDCGSS 70
L V+VP + +NIVTVRCGHC +L++++ QA +QD Q Q+ + + +
Sbjct: 21 ILVVNVPNNCSYNIVTVRCGHCTMVLSMDLAPFHQARTVQDHQVQNRGFQGNNFGSYDIA 80
Query: 71 SKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAF 130
S+ + S+A ++ PIRPPEKRQRVPSAYNRFIKEEIQRIK SNP+ISHREAF
Sbjct: 81 SRNQRTSTAMYPMPTSQQQVSPIRPPEKRQRVPSAYNRFIKEEIQRIKTSNPEISHREAF 140
Query: 131 STAAKNWAHFPHIHFGLKL 149
S AAKNWAH P +HFGL +
Sbjct: 141 SAAAKNWAHLPRLHFGLSV 159
>sp|Q6H668|YAB4_ORYSJ Protein YABBY 4 OS=Oryza sativa subsp. japonica GN=YAB4 PE=2 SV=1
Length = 256
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/180 (49%), Positives = 101/180 (56%), Gaps = 40/180 (22%)
Query: 11 FLGVSVPCSSLFNIVTVRCGHCANLLNVNM------------VSALQAVP-LQDPQKQHI 57
L V VPCSSLF VTVRCGHCANLL+VN+ + L P L P H
Sbjct: 36 ILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHG 95
Query: 58 NLEDS-------ITKDCGSSS----------KCNKFSSAFETA-------EHETPRMPPI 93
L++ + + S+S C + A + E E P+ P
Sbjct: 96 LLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPA 155
Query: 94 ---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD 150
RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL D
Sbjct: 156 SANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD 215
>sp|A2X7Q3|YAB4_ORYSI Protein YABBY 4 OS=Oryza sativa subsp. indica GN=YAB4 PE=2 SV=1
Length = 256
Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 89/180 (49%), Positives = 101/180 (56%), Gaps = 40/180 (22%)
Query: 11 FLGVSVPCSSLFNIVTVRCGHCANLLNVNM------------VSALQAVP-LQDPQKQHI 57
L V VPCSSLF VTVRCGHCANLL+VN+ + L P L P H
Sbjct: 36 ILAVGVPCSSLFKTVTVRCGHCANLLSVNLRGLLLPAPAPAPANQLHFGPSLLSPTSPHG 95
Query: 58 NLEDS-------ITKDCGSSS----------KCNKFSSAFETA-------EHETPRMPPI 93
L++ + + S+S C + A + E E P+ P
Sbjct: 96 LLDEVAFQTPSLLMEQAASASLSSITGRSSSSCASNAPAMQMPPAKPVQQEPELPKNAPA 155
Query: 94 ---RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLD 150
RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL D
Sbjct: 156 SANRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD 215
>sp|Q9XFB1|YAB3_ARATH Axial regulator YABBY 3 OS=Arabidopsis thaliana GN=YAB3 PE=1 SV=1
Length = 240
Score = 132 bits (333), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 90/195 (46%), Positives = 104/195 (53%), Gaps = 34/195 (17%)
Query: 12 LGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVP----------LQDPQKQHINLED 61
L VSVP SSLF VTVRCGHC+NLL+V + +P P NL +
Sbjct: 37 LAVSVPPSSLFKTVTVRCGHCSNLLSVTVSMRALLLPSVSNLGHSFLPPPPPPPPPNLLE 96
Query: 62 SITKDCGSSSKCNKFSSAFETAEHETPRM--------------------PPIRPPEKRQR 101
+ + G + N S +A H + P RPPEKRQR
Sbjct: 97 EM-RSGGQNINMNMMMSHHASAHHPNEHLVMATRNGRSVDHLQEMPRPPPANRPPEKRQR 155
Query: 102 VPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDG--NKQAKLDK 159
VPSAYNRFIKEEIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL D K+A + +
Sbjct: 156 VPSAYNRFIKEEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMADHPPTKKANVRQ 215
Query: 160 AAAYAEGTQKSNGFY 174
+G GFY
Sbjct: 216 QEG-EDGMMGREGFY 229
>sp|Q8L556|YAB3_ORYSJ Protein YABBY 3 OS=Oryza sativa subsp. japonica GN=YAB3 PE=2 SV=1
Length = 313
Score = 117 bits (293), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 56/80 (70%), Positives = 61/80 (76%), Gaps = 3/80 (3%)
Query: 94 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNK 153
RPPEKRQRVPSAYNRFIK+EIQRIKA NPDISHREAFS AAKNWAHFPHIHFGL D
Sbjct: 214 RPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGLMPD--- 270
Query: 154 QAKLDKAAAYAEGTQKSNGF 173
L K + + Q+ +G
Sbjct: 271 HQGLKKTSLLPQDHQRKDGL 290
Score = 37.0 bits (84), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 22 FNIVTVRCGHCANLLNVNMVSAL 44
F VTVRCGHC++LL VNM L
Sbjct: 82 FETVTVRCGHCSSLLTVNMRGLL 104
>sp|Q9LDT3|YAB4_ARATH Axial regulator YABBY 4 OS=Arabidopsis thaliana GN=YAB4 PE=1 SV=2
Length = 231
Score = 112 bits (281), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 97/164 (59%), Gaps = 22/164 (13%)
Query: 11 FLGVSVPCSSLFNIVTVRCGHCANLLNVNMVSA--------LQAVPLQDPQKQHINLEDS 62
L VSVP +SL +VTVRCGHC +LL+VN++ A L + K+ + D
Sbjct: 32 ILLVSVPFTSLSMVVTVRCGHCTSLLSVNLMKASFIPLHLLASLSHLDETGKEEVAATDG 91
Query: 63 ITKDCG--SSSKCNKFSSAFETAEHETPRMPPI-----RPPEKRQRVPSAYNRFIKEEIQ 115
+ ++ + K N ++ ++++E + + +PPEKRQR PSAYN FIKEEI+
Sbjct: 92 VEEEAWKVNQEKENSPTTLVSSSDNEDEDVSRVYQVVNKPPEKRQRAPSAYNCFIKEEIR 151
Query: 116 RIKASNPDISHREAFSTAAKNWAHFPHIHFGLKLDGNKQAKLDK 159
R+KA NP ++H+EAFS AAKNWAHFP H NK+A D+
Sbjct: 152 RLKAQNPSMAHKEAFSLAAKNWAHFPPAH-------NKRAASDQ 188
>sp|Q76EJ0|YABDL_ORYSJ Protein DROOPING LEAF OS=Oryza sativa subsp. japonica GN=DL PE=1
SV=1
Length = 194
Score = 105 bits (262), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/132 (46%), Positives = 75/132 (56%), Gaps = 14/132 (10%)
Query: 12 LGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLED----SITKDC 67
L V VPC L + VTV+CGHC NL S L P P Q ++ D C
Sbjct: 22 LAVGVPCKRLMDTVTVKCGHCNNL------SFLSPRP---PMVQPLSPTDHPLGPFQGPC 72
Query: 68 GSSSKCNKFSSAFETAEHETPRMP-PIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISH 126
+ T+ +PR P ++PPEK+ R+PSAYNRF++EEIQRIKA+ PDI H
Sbjct: 73 TDCRRNQPLPLVSPTSNEGSPRAPFVVKPPEKKHRLPSAYNRFMREEIQRIKAAKPDIPH 132
Query: 127 REAFSTAAKNWA 138
REAFS AAKNWA
Sbjct: 133 REAFSMAAKNWA 144
>sp|Q8L925|CRC_ARATH Protein CRABS CLAW OS=Arabidopsis thaliana GN=CRC PE=1 SV=2
Length = 181
Score = 102 bits (255), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 81/134 (60%), Gaps = 13/134 (9%)
Query: 11 FLGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHINLEDSITKDCGSS 70
L V +P + + VTV+CGHC NL S L P P + H++L + GS
Sbjct: 32 ILAVGIPLKRMLDTVTVKCGHCGNL------SFLTTTP---PLQGHVSLTLQMQSFGGSD 82
Query: 71 SKCNKFSSAFETAEHETPRMPP----IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISH 126
K SS+ + + P P ++PPEK+QR+PSAYNRF+++EIQRIK++NP+I H
Sbjct: 83 YKKGSSSSSSSSTSSDQPPSPSPPFVVKPPEKKQRLPSAYNRFMRDEIQRIKSANPEIPH 142
Query: 127 REAFSTAAKNWAHF 140
REAFS AAKNWA +
Sbjct: 143 REAFSAAAKNWAKY 156
>sp|A2PZN8|YAB7_ORYSJ Protein YABBY 7 OS=Oryza sativa subsp. japonica GN=YAB7 PE=2 SV=1
Length = 169
Score = 89.7 bits (221), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 81/136 (59%), Gaps = 3/136 (2%)
Query: 11 FLGVSVPCSSLFNIVTVRCGHCANLLN-VNMVSALQAVPLQ-DPQKQHINLEDSITKDCG 68
L VSVPCSS+ +V V+CGHC+ +L+ VN+ + + ++ PQ+ D
Sbjct: 27 VLLVSVPCSSVLRVVAVQCGHCSGILSAVNLPPSPVSASIELTPQELDAGPPPGEYSD-E 85
Query: 69 SSSKCNKFSSAFETAEHETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHRE 128
SS + A + A +PP ++QR PSAYN F+KEEI+RIK+ P+I+H++
Sbjct: 86 SSGDDREGRDAEDDAPAPAAAAVANKPPGRKQRTPSAYNCFVKEEIKRIKSMEPNITHKQ 145
Query: 129 AFSTAAKNWAHFPHIH 144
AFSTAAKNWAH P I
Sbjct: 146 AFSTAAKNWAHLPRIQ 161
>sp|Q04EE0|GRPE_OENOB Protein GrpE OS=Oenococcus oeni (strain ATCC BAA-331 / PSU-1)
GN=grpE PE=3 SV=1
Length = 198
Score = 33.9 bits (76), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
Query: 13 GVSVPCSSLFNIVT----VRCGHCANLLNVNMVSALQAVPLQDPQKQ 55
GV + SL N +T V+ G + + N+ +A+Q P+ DP+KQ
Sbjct: 122 GVELTYKSLSNALTDNGIVKIGRAGDQFDPNLHNAIQKTPIDDPEKQ 168
>sp|Q0II87|TFAM_BOVIN Transcription factor A, mitochondrial OS=Bos taurus GN=TFAM PE=2
SV=1
Length = 246
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 20/38 (52%)
Query: 104 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141
++Y RF KE++ KA NPD + E AK W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAKLWRELP 92
>sp|Q00059|TFAM_HUMAN Transcription factor A, mitochondrial OS=Homo sapiens GN=TFAM PE=1
SV=1
Length = 246
Score = 32.0 bits (71), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 104 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141
S+Y RF KE++ KA NPD E A+ W P
Sbjct: 55 SSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 92
>sp|Q4H0T5|TFAM_TRACR Transcription factor A, mitochondrial OS=Trachypithecus cristatus
GN=TFAM PE=2 SV=1
Length = 246
Score = 32.0 bits (71), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 104 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141
S+Y RF KE++ KA NPD E AK W P
Sbjct: 55 SSYLRFSKEQLPIFKAENPDAKPTELIRRIAKLWRELP 92
>sp|Q18079|YXT1_CAEEL Uncharacterized protein C18B2.1 OS=Caenorhabditis elegans
GN=C18B2.1 PE=4 SV=1
Length = 321
Score = 31.6 bits (70), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/35 (48%), Positives = 21/35 (60%)
Query: 86 ETPRMPPIRPPEKRQRVPSAYNRFIKEEIQRIKAS 120
ET MP + KRQ+VPS RFIK E+ K+S
Sbjct: 270 ETTMMPQLEEMLKRQKVPSDSIRFIKNELLYKKSS 304
>sp|Q5D144|TFAM_PIG Transcription factor A, mitochondrial OS=Sus scrofa GN=TFAM PE=2
SV=1
Length = 246
Score = 31.2 bits (69), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 104 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141
++Y RF KE++ KA NPD + E A+ W P
Sbjct: 55 TSYVRFSKEQLPIFKAQNPDAKNSELIKKIAELWRELP 92
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.131 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,260,337
Number of Sequences: 539616
Number of extensions: 2424290
Number of successful extensions: 7656
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 7608
Number of HSP's gapped (non-prelim): 61
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)