Query 030615
Match_columns 174
No_of_seqs 119 out of 185
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 16:25:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030615.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030615hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04690 YABBY: YABBY protein; 100.0 9.8E-72 2.1E-76 454.7 10.9 144 4-147 14-170 (170)
2 PF09011 HMG_box_2: HMG-box do 98.3 1.7E-06 3.6E-11 60.1 4.7 46 96-141 1-47 (73)
3 cd01390 HMGB-UBF_HMG-box HMGB- 97.8 4.9E-05 1.1E-09 50.2 5.0 41 101-141 3-43 (66)
4 cd01388 SOX-TCF_HMG-box SOX-TC 97.7 6.4E-05 1.4E-09 52.1 4.9 42 100-141 3-44 (72)
5 PF00505 HMG_box: HMG (high mo 97.7 6.5E-05 1.4E-09 50.2 4.5 42 100-141 2-43 (69)
6 cd00084 HMG-box High Mobility 97.7 9E-05 1.9E-09 48.4 5.0 43 100-142 2-44 (66)
7 smart00398 HMG high mobility g 97.6 0.00017 3.7E-09 47.5 5.3 43 100-142 3-45 (70)
8 cd01389 MATA_HMG-box MATA_HMG- 97.6 0.0002 4.2E-09 50.1 5.3 43 100-142 3-45 (77)
9 PTZ00199 high mobility group p 97.5 0.00033 7E-09 51.6 5.8 50 93-142 17-68 (94)
10 PF06244 DUF1014: Protein of u 96.7 0.0025 5.5E-08 50.4 4.8 54 91-146 67-120 (122)
11 KOG0381 HMG box-containing pro 96.3 0.0088 1.9E-07 42.7 5.0 45 98-142 22-66 (96)
12 KOG3223 Uncharacterized conser 95.1 0.01 2.3E-07 51.1 1.6 53 93-147 161-213 (221)
13 PF11331 DUF3133: Protein of u 87.5 0.24 5.2E-06 33.6 0.7 36 4-41 8-46 (46)
14 TIGR02098 MJ0042_CXXC MJ0042 f 79.5 1.3 2.8E-05 27.2 1.6 36 1-38 1-37 (38)
15 PF13719 zinc_ribbon_5: zinc-r 77.0 1.3 2.8E-05 27.9 1.0 36 1-38 1-37 (37)
16 PF10122 Mu-like_Com: Mu-like 75.2 0.92 2E-05 31.6 -0.0 12 26-37 4-15 (51)
17 PF05129 Elf1: Transcription e 72.3 2 4.3E-05 31.6 1.1 41 3-43 23-63 (81)
18 PRK03954 ribonuclease P protei 67.8 2.8 6.1E-05 33.3 1.2 34 3-36 65-103 (121)
19 PF04032 Rpr2: RNAse P Rpr2/Rp 62.6 2.9 6.2E-05 29.2 0.3 32 3-34 47-85 (85)
20 COG4888 Uncharacterized Zn rib 56.2 7 0.00015 30.8 1.5 44 3-46 23-66 (104)
21 PF13717 zinc_ribbon_4: zinc-r 55.9 9.9 0.00021 23.9 1.9 34 1-36 1-35 (36)
22 PF08073 CHDNT: CHDNT (NUC034) 51.3 28 0.0006 24.5 3.7 33 105-140 18-50 (55)
23 PF03811 Zn_Tnp_IS1: InsA N-te 48.9 12 0.00026 23.9 1.5 17 22-38 1-17 (36)
24 KOG4684 Uncharacterized conser 48.7 8.4 0.00018 34.4 1.0 16 24-39 168-183 (275)
25 COG4416 Com Mu-like prophage p 45.6 5.1 0.00011 28.7 -0.7 13 24-36 2-14 (60)
26 COG5648 NHP6B Chromatin-associ 43.7 42 0.00091 29.3 4.5 42 100-141 72-113 (211)
27 PF06382 DUF1074: Protein of u 43.1 35 0.00076 29.2 3.8 35 104-142 84-118 (183)
28 PRK14892 putative transcriptio 43.0 22 0.00048 27.3 2.4 42 3-47 22-63 (99)
29 PF09788 Tmemb_55A: Transmembr 37.3 19 0.00041 32.2 1.4 17 23-39 154-170 (256)
30 PF05047 L51_S25_CI-B8: Mitoch 36.0 29 0.00063 22.4 1.8 19 107-125 2-20 (52)
31 PF12876 Cellulase-like: Sugar 35.1 56 0.0012 23.2 3.3 31 95-125 29-59 (88)
32 PF04420 CHD5: CHD5-like prote 35.0 27 0.0006 28.1 1.9 36 101-136 36-71 (161)
33 PF01020 Ribosomal_L40e: Ribos 34.1 15 0.00032 25.8 0.2 9 28-36 38-46 (52)
34 PF05180 zf-DNL: DNL zinc fing 33.4 24 0.00051 25.5 1.2 32 4-35 6-38 (66)
35 TIGR02147 Fsuc_second hypothet 30.0 49 0.0011 29.1 2.8 24 105-128 9-32 (271)
36 COG3712 FecR Fe2+-dicitrate se 29.8 47 0.001 30.3 2.7 31 109-141 32-62 (322)
37 PF13408 Zn_ribbon_recom: Reco 29.8 25 0.00055 22.4 0.8 13 26-38 5-17 (58)
38 smart00709 Zpr1 Duplicated dom 29.6 55 0.0012 26.7 2.8 32 4-35 2-38 (160)
39 KOG4520 Predicted coiled-coil 27.8 71 0.0015 28.2 3.3 35 107-141 62-112 (238)
40 PF14722 KRAP_IP3R_bind: Ki-ra 26.3 70 0.0015 26.9 2.9 28 106-133 71-98 (160)
41 PF05164 ZapA: Cell division p 26.3 1E+02 0.0023 21.2 3.4 32 108-139 28-59 (89)
42 TIGR01053 LSD1 zinc finger dom 25.9 54 0.0012 20.3 1.7 25 4-34 3-27 (31)
43 COG5509 Uncharacterized small 25.1 73 0.0016 23.3 2.5 13 109-121 36-48 (65)
44 KOG0493 Transcription factor E 24.3 39 0.00084 31.1 1.1 51 97-161 246-305 (342)
45 COG4357 Zinc finger domain con 24.1 21 0.00045 28.2 -0.5 21 20-40 56-76 (105)
46 KOG2846 Predicted membrane pro 23.3 2.5E+02 0.0054 26.1 6.1 15 21-35 237-251 (328)
47 PF04769 MAT_Alpha1: Mating-ty 22.7 2.3E+02 0.0049 24.2 5.4 47 92-142 37-83 (201)
48 KOG4715 SWI/SNF-related matrix 21.7 1.2E+02 0.0026 28.6 3.8 48 92-142 61-108 (410)
49 PRK09774 fec operon regulator 20.6 85 0.0018 27.5 2.5 29 111-141 33-61 (319)
50 PF15227 zf-C3HC4_4: zinc fing 20.1 53 0.0011 20.9 0.9 11 21-31 8-18 (42)
No 1
>PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ].
Probab=100.00 E-value=9.8e-72 Score=454.69 Aligned_cols=144 Identities=60% Similarity=0.939 Sum_probs=111.4
Q ss_pred ccceeeeeeeecccCCCCcceeeeecCCCCCccccccccccCCCCCCCcccccc--------CC-CCcccCcCC---CCC
Q 030615 4 NVLVFLFFLGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAVPLQDPQKQHI--------NL-EDSITKDCG---SSS 71 (174)
Q Consensus 4 ~~~~C~TILaVsVPcssL~~~VTVRCGHCtnLlsVNm~~llqs~~~q~~~~~~~--------~~-~~~~~~~~~---sss 71 (174)
.||||||||||||||+|||+|||||||||+|||||||++++++++.|++..+.. .. .+....... +++
T Consensus 14 hCnFC~TiLaVsVP~ssL~~~VTVRCGHCtNLLSVNm~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (170)
T PF04690_consen 14 HCNFCNTILAVSVPCSSLLKTVTVRCGHCTNLLSVNMRALLQPLPSQDHLQHSLLPPQSQELQFQPENFGSNSSSSSSSS 93 (170)
T ss_pred EcCCcCeEEEEecchhhhhhhhceeccCccceeeeeccccccCCCcccchhccccccccccccccccccccccccCCCcc
Confidence 699999999999999999999999999999999999999999988766411110 00 111111111 111
Q ss_pred cCCCCCCccccCCCCCCCCC-CCCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCcccccc
Q 030615 72 KCNKFSSAFETAEHETPRMP-PIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 147 (174)
Q Consensus 72 ~~~~~~~~~~~~~~~~p~~~-~~KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~PhihfGl 147 (174)
++..........+++.|+++ ++||||||||+|||||+||||||||||++||||+|||||++|||||||+|||||||
T Consensus 94 ~~~~~~~~~~~~~~~~pr~~~v~kPPEKRqR~psaYn~f~k~ei~rik~~~p~ishkeaFs~aAknW~h~phihfgl 170 (170)
T PF04690_consen 94 SSSSSSSMSFSEEEEIPRAPPVNKPPEKRQRVPSAYNRFMKEEIQRIKAENPDISHKEAFSAAAKNWAHFPHIHFGL 170 (170)
T ss_pred ccccccccCccccccccccccccCCccccCCCchhHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhCcccccCC
Confidence 11110011233455667654 68999999999999999999999999999999999999999999999999999997
No 2
>PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins. It has no known function. ; GO: 0005634 nucleus; PDB: 2EQZ_A 1V64_A 2CTO_A 1H5P_A 3TQ6_A 3FGH_A 3TMM_A 1J3X_A 2YRQ_A 1AAB_A ....
Probab=98.25 E-value=1.7e-06 Score=60.12 Aligned_cols=46 Identities=35% Similarity=0.624 Sum_probs=38.5
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhh-CCCCCHHHHHHHHHHhhccCC
Q 030615 96 PEKRQRVPSAYNRFIKEEIQRIKAS-NPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 96 PEKRQRvpSayN~fmK~ei~riK~~-~P~i~HkEaFs~aAknW~~~P 141 (174)
|.|-.|.+|||+.||++.+.+++.. .+.++++|++..++..|+..+
T Consensus 1 p~kpK~~~say~lF~~~~~~~~k~~G~~~~~~~e~~k~~~~~Wk~Ls 47 (73)
T PF09011_consen 1 PKKPKRPPSAYNLFMKEMRKEVKEEGGQKQSFREVMKEISERWKSLS 47 (73)
T ss_dssp SSS--SSSSHHHHHHHHHHHHHHHHT-T-SSHHHHHHHHHHHHHHS-
T ss_pred CcCCCCCCCHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhcC
Confidence 5677899999999999999999999 888999999999999999754
No 3
>cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins. These proteins bind the minor groove of DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III members include nucleolar and mitochondrial transcription factors, UBF and mtTF1, which bind four-way DNA junctions.
Probab=97.80 E-value=4.9e-05 Score=50.22 Aligned_cols=41 Identities=32% Similarity=0.487 Sum_probs=38.7
Q ss_pred CCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 101 RVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 101 RvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
|-+|||..||++....+++.+|+++..|....++..|+..+
T Consensus 3 rp~saf~~f~~~~r~~~~~~~p~~~~~~i~~~~~~~W~~ls 43 (66)
T cd01390 3 RPLSAYFLFSQEQRPKLKKENPDASVTEVTKILGEKWKELS 43 (66)
T ss_pred CCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence 56899999999999999999999999999999999999765
No 4
>cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include SRY and its homologs in insects and vertebrates, and transcription factor-like proteins, TCF-1, -3, -4, and LEF-1. They appear to bind the minor groove of the A/T C A A A G/C-motif.
Probab=97.74 E-value=6.4e-05 Score=52.05 Aligned_cols=42 Identities=17% Similarity=0.284 Sum_probs=39.1
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
.|-++||..|+++.-.+|++++|+++..|.-+.++..|+..+
T Consensus 3 KrP~naf~~F~~~~r~~~~~~~p~~~~~eisk~l~~~Wk~ls 44 (72)
T cd01388 3 KRPMNAFMLFSKRHRRKVLQEYPLKENRAISKILGDRWKALS 44 (72)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 367899999999999999999999999999999999999754
No 5
>PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin. HMG1 (also called HMG-T in fish) and HMG2 are two highly related proteins that bind single-stranded DNA preferentially and unwind double-stranded DNA. Although they have no sequence specificity, they have a high affinity for bent or distorted DNA, and bend linear DNA. HMG1 and HMG2 contain two DNA-binding HMG-box domains (A and B) that show structural and functional differences, and have a long acidic C-terminal domain rich in aspartic and glutamic acid residues. The acidic tail modulates the affinity of the tandem HMG boxes in HMG1 and 2 for a variety of DNA targets. HMG1 and 2 appear to play important architectural roles in the assembly of nucleoprotein complexes in a variety of biological processes, for example V(D)J recombination, the initiation of transcription, and DNA repair []. The profile in this entry describing the HMG-domains is much more general than the signature. In addition to the HMG1 and HMG2 proteins, HMG-domains occur in single or multiple copies in the following protein classes; the SOX family of transcription factors; SRY sex determining region Y protein and related proteins []; LEF1 lymphoid enhancer binding factor 1 []; SSRP recombination signal recognition protein; MTF1 mitochondrial transcription factor 1; UBF1/2 nucleolar transcription factors; Abf2 yeast ARS-binding factor []; and Saccharomyces cerevisiae transcription factors Ixr1, Rox1, Nhp6a, Nhp6b and Spp41.; GO: 0003677 DNA binding; PDB: 1I11_A 1J3C_A 1J3D_A 1WZ6_A 1WGF_A 2D7L_A 1GT0_D 3U2B_C 2CRJ_A 2CS1_A ....
Probab=97.71 E-value=6.5e-05 Score=50.18 Aligned_cols=42 Identities=33% Similarity=0.624 Sum_probs=37.3
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
.|-+|||..|+++....||+++|+++..|.-+.+++.|+..+
T Consensus 2 krP~~af~lf~~~~~~~~k~~~p~~~~~~i~~~~~~~W~~l~ 43 (69)
T PF00505_consen 2 KRPPNAFMLFCKEKRAKLKEENPDLSNKEISKILAQMWKNLS 43 (69)
T ss_dssp SSS--HHHHHHHHHHHHHHHHSTTSTHHHHHHHHHHHHHCSH
T ss_pred cCCCCHHHHHHHHHHHHHHHHhcccccccchhhHHHHHhcCC
Confidence 467899999999999999999999999999999999999753
No 6
>cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors. HMGs bind to the minor groove of DNA and have been classified by DNA binding preferences. Two phylogenically distinct groups of Class I proteins bind DNA in a sequence specific fashion and contain a single HMG box. One group (SOX-TCF) includes transcription factors, TCF-1, -3, -4; and also SRY and LEF-1, which bind four-way DNA junctions and duplex DNA targets. The second group (MATA) includes fungal mating type gene products MC, MATA1 and Ste11. Class II and III proteins (HMGB-UBF) bind DNA in a non-sequence specific fashion and contain two or more tandem HMG boxes. Class II members include non-histone chromosomal proteins, HMG1 and HMG2, which bind to bent or distorted DNA such as four-way DNA junctions, synthetic DNA cruciforms, kinked cisplatin-modified DNA, DNA bulges, cross-overs in supercoiled DNA, and can cause looping of linear DNA. Class III member
Probab=97.70 E-value=9e-05 Score=48.38 Aligned_cols=43 Identities=30% Similarity=0.422 Sum_probs=39.6
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 142 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~Ph 142 (174)
.|-+|+|..|++++...+++.+|+++..|....+++.|+..+.
T Consensus 2 krp~~af~~f~~~~~~~~~~~~~~~~~~~i~~~~~~~W~~l~~ 44 (66)
T cd00084 2 KRPLSAYFLFSQEHRAEVKAENPGLSVGEISKILGEMWKSLSE 44 (66)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCCH
Confidence 3568999999999999999999999999999999999997654
No 7
>smart00398 HMG high mobility group.
Probab=97.60 E-value=0.00017 Score=47.55 Aligned_cols=43 Identities=33% Similarity=0.511 Sum_probs=39.5
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 142 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~Ph 142 (174)
.|-+|+|..|+++....+++++|+++..|....++..|+..+.
T Consensus 3 krp~~~y~~f~~~~r~~~~~~~~~~~~~~i~~~~~~~W~~l~~ 45 (70)
T smart00398 3 KRPMSAFMLFSQENRAKIKAENPDLSNAEISKKLGERWKLLSE 45 (70)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHcCCH
Confidence 4678999999999999999999999999999999999997653
No 8
>cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins. These proteins contain a single HMG box, and bind the minor groove of DNA in a highly sequence-specific manner. Members include the fungal mating type gene products MC, MATA1 and Ste11.
Probab=97.55 E-value=0.0002 Score=50.07 Aligned_cols=43 Identities=16% Similarity=0.348 Sum_probs=40.2
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 142 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~Ph 142 (174)
.|-++||-.|+++....|+++||++++.|.-+.++..|+..+.
T Consensus 3 kRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~~g~~Wk~ls~ 45 (77)
T cd01389 3 PRPRNAFILYRQDKHAQLKTENPGLTNNEISRIIGRMWRSESP 45 (77)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCCH
Confidence 4789999999999999999999999999999999999998654
No 9
>PTZ00199 high mobility group protein; Provisional
Probab=97.47 E-value=0.00033 Score=51.64 Aligned_cols=50 Identities=26% Similarity=0.422 Sum_probs=42.8
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCCc
Q 030615 93 IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDIS--HREAFSTAAKNWAHFPH 142 (174)
Q Consensus 93 ~KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~--HkEaFs~aAknW~~~Ph 142 (174)
.+.|.+-.|-+|||..|+++.-..|+++||+++ -.|.-+.++..|+..+.
T Consensus 17 ~kdp~~PKrP~sAY~~F~~~~R~~i~~~~P~~~~~~~evsk~ige~Wk~ls~ 68 (94)
T PTZ00199 17 KKDPNAPKRALSAYMFFAKEKRAEIIAENPELAKDVAAVGKMVGEAWNKLSE 68 (94)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHHCcCCcccHHHHHHHHHHHHHcCCH
Confidence 355666678899999999999999999999987 57888899999998663
No 10
>PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function.
Probab=96.74 E-value=0.0025 Score=50.45 Aligned_cols=54 Identities=28% Similarity=0.510 Sum_probs=48.3
Q ss_pred CCCCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCccccc
Q 030615 91 PPIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFG 146 (174)
Q Consensus 91 ~~~KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~PhihfG 146 (174)
.+-|.||||-+ -||..|--.+|.+||++||++.+-+-=-..=|.|..+|...|-
T Consensus 67 ~~drHPErR~K--AAy~afeE~~Lp~lK~E~PgLrlsQ~kq~l~K~w~KSPeNP~N 120 (122)
T PF06244_consen 67 PIDRHPERRMK--AAYKAFEERRLPELKEENPGLRLSQYKQMLWKEWQKSPENPFN 120 (122)
T ss_pred CCCCCcchhHH--HHHHHHHHHHhHHHHhhCCCchHHHHHHHHHHHHhcCCCCCcc
Confidence 45688999864 6999999999999999999999999888999999999998763
No 11
>KOG0381 consensus HMG box-containing protein [General function prediction only]
Probab=96.34 E-value=0.0088 Score=42.67 Aligned_cols=45 Identities=29% Similarity=0.429 Sum_probs=40.2
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 030615 98 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 142 (174)
Q Consensus 98 KRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~Ph 142 (174)
.-+|-+|||..|+.+.-.+||++||+++..|.=+.+...|.....
T Consensus 22 ~pkrp~sa~~~f~~~~~~~~k~~~p~~~~~~v~k~~g~~W~~l~~ 66 (96)
T KOG0381|consen 22 APKRPLSAFFLFSSEQRSKIKAENPGLSVGEVAKALGEMWKNLAE 66 (96)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCH
Confidence 456778899999999999999999999999999999999987543
No 12
>KOG3223 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.01 Score=51.14 Aligned_cols=53 Identities=30% Similarity=0.508 Sum_probs=47.5
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCcccccc
Q 030615 93 IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 147 (174)
Q Consensus 93 ~KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~PhihfGl 147 (174)
-|-||||-|. ||--|=..+|-|||.++|+++|-+-=-..-|.|..+|...|.-
T Consensus 161 drHPEkRmrA--A~~afEe~~LPrLK~e~P~lrlsQ~Kqll~Kew~KsPDNP~Nq 213 (221)
T KOG3223|consen 161 DRHPEKRMRA--AFKAFEEARLPRLKKENPGLRLSQYKQLLKKEWQKSPDNPFNQ 213 (221)
T ss_pred ccChHHHHHH--HHHHHHHhhchhhhhcCCCccHHHHHHHHHHHHhhCCCChhhH
Confidence 3899998774 9999999999999999999999988778889999999988853
No 13
>PF11331 DUF3133: Protein of unknown function (DUF3133); InterPro: IPR021480 This eukaryotic family of proteins has no known function.
Probab=87.52 E-value=0.24 Score=33.56 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=25.8
Q ss_pred ccceeeeeeeecccCCCCcc---eeeeecCCCCCccccccc
Q 030615 4 NVLVFLFFLGVSVPCSSLFN---IVTVRCGHCANLLNVNMV 41 (174)
Q Consensus 4 ~~~~C~TILaVsVPcssL~~---~VTVRCGHCtnLlsVNm~ 41 (174)
.|.-|..+| .+|-+.++. .-.+|||.|+.++++.++
T Consensus 8 ~C~~C~~lL--qlP~~~~~~~k~~~klrCGaCs~vl~~s~~ 46 (46)
T PF11331_consen 8 VCSSCFELL--QLPAKFSLSKKNQQKLRCGACSEVLSFSLP 46 (46)
T ss_pred ECccHHHHH--cCCCccCCCccceeEEeCCCCceeEEEecC
Confidence 477775554 457775443 568999999999988653
No 14
>TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain. This domain contains a CXXCX(19)CXXC motif suggestive of both zinc fingers and thioredoxin, usually found at the N-terminus of prokaryotic proteins. One partially characterized gene, agmX, is among a large set in Myxococcus whose interruption affects adventurous gliding motility.
Probab=79.54 E-value=1.3 Score=27.22 Aligned_cols=36 Identities=28% Similarity=0.270 Sum_probs=24.7
Q ss_pred CCcccceeeeeeeecccCCCCc-ceeeeecCCCCCcccc
Q 030615 1 MATNVLVFLFFLGVSVPCSSLF-NIVTVRCGHCANLLNV 38 (174)
Q Consensus 1 ~~~~~~~C~TILaVsVPcssL~-~~VTVRCGHCtnLlsV 38 (174)
|..-|..|.+..-|.. +.+- +...|+|++|.+.+.+
T Consensus 1 M~~~CP~C~~~~~v~~--~~~~~~~~~v~C~~C~~~~~~ 37 (38)
T TIGR02098 1 MRIQCPNCKTSFRVVD--SQLGANGGKVRCGKCGHVWYA 37 (38)
T ss_pred CEEECCCCCCEEEeCH--HHcCCCCCEEECCCCCCEEEe
Confidence 5667888988876653 2221 3347999999987754
No 15
>PF13719 zinc_ribbon_5: zinc-ribbon domain
Probab=76.98 E-value=1.3 Score=27.93 Aligned_cols=36 Identities=25% Similarity=0.330 Sum_probs=25.9
Q ss_pred CCcccceeeeeeeecccCCCC-cceeeeecCCCCCcccc
Q 030615 1 MATNVLVFLFFLGVSVPCSSL-FNIVTVRCGHCANLLNV 38 (174)
Q Consensus 1 ~~~~~~~C~TILaVsVPcssL-~~~VTVRCGHCtnLlsV 38 (174)
|-+-|.-|.|.+-| |-+.| -....|||++|.+...|
T Consensus 1 M~i~CP~C~~~f~v--~~~~l~~~~~~vrC~~C~~~f~v 37 (37)
T PF13719_consen 1 MIITCPNCQTRFRV--PDDKLPAGGRKVRCPKCGHVFRV 37 (37)
T ss_pred CEEECCCCCceEEc--CHHHcccCCcEEECCCCCcEeeC
Confidence 56678889888764 44444 34679999999987643
No 16
>PF10122 Mu-like_Com: Mu-like prophage protein Com; InterPro: IPR019294 Members of this entry belong to the Com family of proteins that act as translational regulators of mom [, ].
Probab=75.23 E-value=0.92 Score=31.58 Aligned_cols=12 Identities=58% Similarity=1.428 Sum_probs=10.7
Q ss_pred eeecCCCCCccc
Q 030615 26 TVRCGHCANLLN 37 (174)
Q Consensus 26 TVRCGHCtnLls 37 (174)
.+|||||+-||.
T Consensus 4 eiRC~~CnklLa 15 (51)
T PF10122_consen 4 EIRCGHCNKLLA 15 (51)
T ss_pred ceeccchhHHHh
Confidence 689999999985
No 17
>PF05129 Elf1: Transcription elongation factor Elf1 like; InterPro: IPR007808 This family of uncharacterised, mostly short, proteins contain a putative zinc binding domain with four conserved cysteines.; PDB: 1WII_A.
Probab=72.32 E-value=2 Score=31.55 Aligned_cols=41 Identities=15% Similarity=0.121 Sum_probs=26.0
Q ss_pred cccceeeeeeeecccCCCCcceeeeecCCCCCccccccccc
Q 030615 3 TNVLVFLFFLGVSVPCSSLFNIVTVRCGHCANLLNVNMVSA 43 (174)
Q Consensus 3 ~~~~~C~TILaVsVPcssL~~~VTVRCGHCtnLlsVNm~~l 43 (174)
-+|.||+.--+|+|=.+.-..+-++.||-|.---..++..|
T Consensus 23 F~CPfC~~~~sV~v~idkk~~~~~~~C~~Cg~~~~~~i~~L 63 (81)
T PF05129_consen 23 FDCPFCNHEKSVSVKIDKKEGIGILSCRVCGESFQTKINPL 63 (81)
T ss_dssp ---TTT--SS-EEEEEETTTTEEEEEESSS--EEEEE--SS
T ss_pred EcCCcCCCCCeEEEEEEccCCEEEEEecCCCCeEEEccCcc
Confidence 47999999999999999999999999999954443444333
No 18
>PRK03954 ribonuclease P protein component 4; Validated
Probab=67.77 E-value=2.8 Score=33.25 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=25.6
Q ss_pred cccceeeeeeeecccCC-CCcc----eeeeecCCCCCcc
Q 030615 3 TNVLVFLFFLGVSVPCS-SLFN----IVTVRCGHCANLL 36 (174)
Q Consensus 3 ~~~~~C~TILaVsVPcs-sL~~----~VTVRCGHCtnLl 36 (174)
+-|--|+|.|.-||-|. ++-+ -|.|+|..|...-
T Consensus 65 ~~CK~C~t~LiPG~n~~vRi~~~~~~~vvitCl~CG~~k 103 (121)
T PRK03954 65 RYCKRCHSFLVPGVNARVRLRQKRMPHVVITCLECGHIM 103 (121)
T ss_pred HHhhcCCCeeecCCceEEEEecCCcceEEEECccCCCEE
Confidence 45889999999887665 2222 4899999998764
No 19
>PF04032 Rpr2: RNAse P Rpr2/Rpp21/SNM1 subunit domain; InterPro: IPR007175 This family contains a ribonuclease P subunit of human and yeast. Other members of the family include the probable archaeal homologues. This subunit possibly binds the precursor tRNA [].; PDB: 2K3R_A 2KI7_B 2ZAE_B 1X0T_A.
Probab=62.62 E-value=2.9 Score=29.20 Aligned_cols=32 Identities=25% Similarity=0.258 Sum_probs=19.7
Q ss_pred cccceeeeeeeecccCCC-------CcceeeeecCCCCC
Q 030615 3 TNVLVFLFFLGVSVPCSS-------LFNIVTVRCGHCAN 34 (174)
Q Consensus 3 ~~~~~C~TILaVsVPcss-------L~~~VTVRCGHCtn 34 (174)
+-|.-|.++|.-|+-|+- .-+.|.++|..|.+
T Consensus 47 ~~Ck~C~~~liPG~~~~vri~~~~~~~~~l~~~C~~C~~ 85 (85)
T PF04032_consen 47 TICKKCGSLLIPGVNCSVRIRKKKKKKNFLVYTCLNCGH 85 (85)
T ss_dssp TB-TTT--B--CTTTEEEEEE---SSS-EEEEEETTTTE
T ss_pred ccccCCCCEEeCCCccEEEEEecCCCCCEEEEEccccCC
Confidence 458889999998887762 24688999999963
No 20
>COG4888 Uncharacterized Zn ribbon-containing protein [General function prediction only]
Probab=56.18 E-value=7 Score=30.77 Aligned_cols=44 Identities=16% Similarity=0.104 Sum_probs=32.6
Q ss_pred cccceeeeeeeecccCCCCcceeeeecCCCCCccccccccccCC
Q 030615 3 TNVLVFLFFLGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQA 46 (174)
Q Consensus 3 ~~~~~C~TILaVsVPcssL~~~VTVRCGHCtnLlsVNm~~llqs 46 (174)
.||.+|+-...|+--.+--.++-|+-||-|.----+-.++++++
T Consensus 23 FtCp~Cghe~vs~ctvkk~~~~g~~~Cg~CGls~e~ev~~l~~~ 66 (104)
T COG4888 23 FTCPRCGHEKVSSCTVKKTVNIGTAVCGNCGLSFECEVPELSEP 66 (104)
T ss_pred EecCccCCeeeeEEEEEecCceeEEEcccCcceEEEeccccccc
Confidence 48999999999987777788888999999974333444444443
No 21
>PF13717 zinc_ribbon_4: zinc-ribbon domain
Probab=55.88 E-value=9.9 Score=23.89 Aligned_cols=34 Identities=15% Similarity=0.215 Sum_probs=22.5
Q ss_pred CCcccceeeeeeeecccCCCC-cceeeeecCCCCCcc
Q 030615 1 MATNVLVFLFFLGVSVPCSSL-FNIVTVRCGHCANLL 36 (174)
Q Consensus 1 ~~~~~~~C~TILaVsVPcssL-~~~VTVRCGHCtnLl 36 (174)
|-.-|.-|.+...|. =+.+ =+.+.|||+.|.++.
T Consensus 1 M~i~Cp~C~~~y~i~--d~~ip~~g~~v~C~~C~~~f 35 (36)
T PF13717_consen 1 MIITCPNCQAKYEID--DEKIPPKGRKVRCSKCGHVF 35 (36)
T ss_pred CEEECCCCCCEEeCC--HHHCCCCCcEEECCCCCCEe
Confidence 445677788877654 1211 245799999998764
No 22
>PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0008270 zinc ion binding, 0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=51.29 E-value=28 Score=24.52 Aligned_cols=33 Identities=15% Similarity=0.448 Sum_probs=26.2
Q ss_pred hhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 030615 105 AYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHF 140 (174)
Q Consensus 105 ayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 140 (174)
+|..+|+=- |-+.||++.+-.-+...+..|+.|
T Consensus 18 ~Fsq~vRP~---l~~~NPk~~~sKl~~l~~AKwrEF 50 (55)
T PF08073_consen 18 AFSQHVRPL---LAKANPKAPMSKLMMLLQAKWREF 50 (55)
T ss_pred HHHHHHHHH---HHHHCCCCcHHHHHHHHHHHHHHH
Confidence 445555544 457899999999999999999986
No 23
>PF03811 Zn_Tnp_IS1: InsA N-terminal domain; InterPro: IPR003220 Insertion elements are mobile elements in DNA, usually encoding proteins required for transposition, for example transposases. Protein InsA is absolutely required for transposition of insertion element 1. This entry represents a short zinc binding domain found in IS1 InsA family protein. It is found at the N terminus of the protein and may be a DNA-binding domain.; GO: 0006313 transposition, DNA-mediated
Probab=48.91 E-value=12 Score=23.87 Aligned_cols=17 Identities=24% Similarity=0.563 Sum_probs=14.1
Q ss_pred cceeeeecCCCCCcccc
Q 030615 22 FNIVTVRCGHCANLLNV 38 (174)
Q Consensus 22 ~~~VTVRCGHCtnLlsV 38 (174)
|.+|+|.|-+|.+-.+|
T Consensus 1 Ma~i~v~CP~C~s~~~v 17 (36)
T PF03811_consen 1 MAKIDVHCPRCQSTEGV 17 (36)
T ss_pred CCcEeeeCCCCCCCCcc
Confidence 46899999999987754
No 24
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=48.66 E-value=8.4 Score=34.39 Aligned_cols=16 Identities=38% Similarity=0.816 Sum_probs=12.6
Q ss_pred eeeeecCCCCCccccc
Q 030615 24 IVTVRCGHCANLLNVN 39 (174)
Q Consensus 24 ~VTVRCGHCtnLlsVN 39 (174)
.+-|+||||++..--|
T Consensus 168 gcRV~CgHC~~tFLfn 183 (275)
T KOG4684|consen 168 GCRVKCGHCNETFLFN 183 (275)
T ss_pred ceEEEecCccceeehh
Confidence 3899999999975433
No 25
>COG4416 Com Mu-like prophage protein Com [General function prediction only]
Probab=45.62 E-value=5.1 Score=28.70 Aligned_cols=13 Identities=46% Similarity=1.124 Sum_probs=11.2
Q ss_pred eeeeecCCCCCcc
Q 030615 24 IVTVRCGHCANLL 36 (174)
Q Consensus 24 ~VTVRCGHCtnLl 36 (174)
+-|.||-||+-||
T Consensus 2 ~~tiRC~~CnKlL 14 (60)
T COG4416 2 MQTIRCAKCNKLL 14 (60)
T ss_pred ceeeehHHHhHHH
Confidence 4589999999987
No 26
>COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics]
Probab=43.74 E-value=42 Score=29.28 Aligned_cols=42 Identities=24% Similarity=0.419 Sum_probs=37.8
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
.|--|||-.|..+-=.+|...+|+++--|.=..+.+.|+..-
T Consensus 72 KRp~sayf~y~~~~R~ei~~~~p~l~~~e~~k~~~e~WK~Lt 113 (211)
T COG5648 72 KRPLSAYFLYSAENRDEIRKENPKLTFGEVGKLLSEKWKELT 113 (211)
T ss_pred CCchhHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHhcc
Confidence 466799999999999999999999999999999999999753
No 27
>PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta. The function of this family is unknown.
Probab=43.14 E-value=35 Score=29.24 Aligned_cols=35 Identities=23% Similarity=0.563 Sum_probs=30.0
Q ss_pred hhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 030615 104 SAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 142 (174)
Q Consensus 104 SayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~Ph 142 (174)
++|=.||.+ .+..|.+|..+|.-..||+-|...+.
T Consensus 84 naYLNFLRe----FRrkh~~L~p~dlI~~AAraW~rLSe 118 (183)
T PF06382_consen 84 NAYLNFLRE----FRRKHCGLSPQDLIQRAARAWCRLSE 118 (183)
T ss_pred hHHHHHHHH----HHHHccCCCHHHHHHHHHHHHHhCCH
Confidence 678888764 77789999999999999999987654
No 28
>PRK14892 putative transcription elongation factor Elf1; Provisional
Probab=42.97 E-value=22 Score=27.28 Aligned_cols=42 Identities=21% Similarity=0.325 Sum_probs=32.4
Q ss_pred cccceeeeeeeecccCCCCcceeeeecCCCCCccccccccccCCC
Q 030615 3 TNVLVFLFFLGVSVPCSSLFNIVTVRCGHCANLLNVNMVSALQAV 47 (174)
Q Consensus 3 ~~~~~C~TILaVsVPcssL~~~VTVRCGHCtnLlsVNm~~llqs~ 47 (174)
..|.+|+- ..|+||... .+..+.|..|.---.-.+..|.++.
T Consensus 22 f~CP~Cge-~~v~v~~~k--~~~h~~C~~CG~y~~~~V~~l~epI 63 (99)
T PRK14892 22 FECPRCGK-VSISVKIKK--NIAIITCGNCGLYTEFEVPSVYDEV 63 (99)
T ss_pred eECCCCCC-eEeeeecCC--CcceEECCCCCCccCEECCccccch
Confidence 47999995 688888888 7999999999877665555555443
No 29
>PF09788 Tmemb_55A: Transmembrane protein 55A; InterPro: IPR019178 Members of this family catalyse the hydrolysis of the 4-position phosphate of phosphatidylinositol 4,5-bisphosphate, in the reaction: 1-phosphatidyl-myo-inositol 4,5-bisphosphate + H(2)O = 1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Probab=37.35 E-value=19 Score=32.17 Aligned_cols=17 Identities=41% Similarity=0.813 Sum_probs=13.0
Q ss_pred ceeeeecCCCCCccccc
Q 030615 23 NIVTVRCGHCANLLNVN 39 (174)
Q Consensus 23 ~~VTVRCGHCtnLlsVN 39 (174)
...-|+||||.+-..-|
T Consensus 154 ~~~rv~CghC~~~Fl~~ 170 (256)
T PF09788_consen 154 GSCRVICGHCSNTFLFN 170 (256)
T ss_pred CceeEECCCCCCcEecc
Confidence 56779999999876544
No 30
>PF05047 L51_S25_CI-B8: Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain ; InterPro: IPR007741 Proteins containing this domain are located in the mitochondrion and include ribosomal protein L51, and S25. This domain is also found in mitochondrial NADH-ubiquinone oxidoreductase B8 subunit (CI-B8) 1.6.5.3 from EC. It is not known whether all members of this family form part of the NADH-ubiquinone oxidoreductase and whether they are also all ribosomal proteins.; PDB: 1S3A_A.
Probab=35.97 E-value=29 Score=22.42 Aligned_cols=19 Identities=26% Similarity=0.639 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHhhCCCCC
Q 030615 107 NRFIKEEIQRIKASNPDIS 125 (174)
Q Consensus 107 N~fmK~ei~riK~~~P~i~ 125 (174)
..|+++-+..||..||++.
T Consensus 2 R~F~~~~lp~l~~~NP~v~ 20 (52)
T PF05047_consen 2 RDFLKNNLPTLKYHNPQVQ 20 (52)
T ss_dssp HHHHHHTHHHHHHHSTT--
T ss_pred HhHHHHhHHHHHHHCCCcE
Confidence 3699999999999999964
No 31
>PF12876 Cellulase-like: Sugar-binding cellulase-like; InterPro: IPR024778 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This entry represents a family of putative cellulase enzymes.; PDB: 3GYC_B.
Probab=35.09 E-value=56 Score=23.18 Aligned_cols=31 Identities=29% Similarity=0.507 Sum_probs=22.8
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCC
Q 030615 95 PPEKRQRVPSAYNRFIKEEIQRIKASNPDIS 125 (174)
Q Consensus 95 PPEKRQRvpSayN~fmK~ei~riK~~~P~i~ 125 (174)
|.+.......+|-.+|++-++.||+.+|+.+
T Consensus 29 ~~~~~~~~~~~~~~~l~~~~~~iR~~dP~~p 59 (88)
T PF12876_consen 29 PAEWGDPKAEAYAEWLKEAFRWIRAVDPSQP 59 (88)
T ss_dssp TT-TT-TTSHHHHHHHHHHHHHHHTT-TTS-
T ss_pred cccccchhHHHHHHHHHHHHHHHHHhCCCCc
Confidence 3345555788999999999999999999844
No 32
>PF04420 CHD5: CHD5-like protein; InterPro: IPR007514 Members of this family are probably coiled-coil proteins that are similar to the CHD5 (Congenital heart disease 5) protein. The exact molecular function of these eukaryotic proteins is unknown.; PDB: 3SJA_H 3SJC_D 3SJB_D 3ZS8_D 3VLC_E.
Probab=35.04 E-value=27 Score=28.06 Aligned_cols=36 Identities=28% Similarity=0.305 Sum_probs=30.5
Q ss_pred CCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHh
Q 030615 101 RVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN 136 (174)
Q Consensus 101 RvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAkn 136 (174)
...+.-.+=++.||+++|+|.-.|+..+-|...||.
T Consensus 36 ~~~~~~~~~l~~Ei~~l~~E~~~iS~qDeFAkwaKl 71 (161)
T PF04420_consen 36 SKSSKEQRQLRKEILQLKRELNAISAQDEFAKWAKL 71 (161)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHTTS-TTTSHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 356677788999999999999999999999999985
No 33
>PF01020 Ribosomal_L40e: Ribosomal L40e family; InterPro: IPR001975 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family contains the L40 ribosomal protein from both archaea and eukaryotes. Bovine ribosomal protein L40 has been identified as a secondary RNA binding protein []. L40 is fused to a ubiquitin protein [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3IZS_p 3IZR_p 2AYJ_A 4A1B_K 4A19_K 4A18_K 4A1D_K.
Probab=34.14 E-value=15 Score=25.75 Aligned_cols=9 Identities=56% Similarity=1.191 Sum_probs=5.6
Q ss_pred ecCCCCCcc
Q 030615 28 RCGHCANLL 36 (174)
Q Consensus 28 RCGHCtnLl 36 (174)
+|||+++|-
T Consensus 38 kCGhsn~LR 46 (52)
T PF01020_consen 38 KCGHSNNLR 46 (52)
T ss_dssp SCTS-S-EE
T ss_pred cCCCCcccC
Confidence 499999884
No 34
>PF05180 zf-DNL: DNL zinc finger; InterPro: IPR007853 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNL-type zinc finger is found in Tim15, a zinc finger protein essential for protein import into mitochondria. Mitochondrial functions rely on the correct transport of resident proteins synthesized in the cytosol to mitochondria. Protein import into mitochondria is mediated by membrane protein complexes, protein translocators, in the outer and inner mitochondrial membranes, in cooperation with their assistant proteins in the cytosol, intermembrane space and matrix. Proteins destined to the mitochondrial matrix cross the outer membrane with the aid of the outer membrane translocator, the tOM40 complex, and then the inner membrane with the aid of the inner membrane translocator, the TIM23 complex, and mitochondrial motor and chaperone (MMC) proteins including mitochondrial heat- shock protein 70 (mtHsp70), and translocase in the inner mitochondrial membrane (Tim)15. Tim15 is also known as zinc finger motif (Zim)17 or mtHsp70 escort protein (Hep)1. Tim15 contains a zinc-finger motif (CXXC and CXXC) of ~100 residues, which has been named DNL after a short C-terminal motif of D(N/H)L [, , ]. The DNL-type zinc finger is an L-shaped molecule. The two CXXC motifs are located at the end of the L, and are sandwiched by two- stranded antiparallel beta-sheets. Two short alpha-helices constitute another leg of the L. The outer (convex) face of the L has a large acidic groove, which is lined with five acidic residues, whereas the inner (concave) face of the L has two positively charged residues, next to the CXXC motifs []. This entry represents the DNL-type zinc finger.; GO: 0008270 zinc ion binding; PDB: 2E2Z_A.
Probab=33.43 E-value=24 Score=25.52 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=16.0
Q ss_pred ccceeeeeeeecccCCC-CcceeeeecCCCCCc
Q 030615 4 NVLVFLFFLGVSVPCSS-LFNIVTVRCGHCANL 35 (174)
Q Consensus 4 ~~~~C~TILaVsVPcss-L~~~VTVRCGHCtnL 35 (174)
-|+.|+|-=+-.+--.+ =--+|-|||..|.|.
T Consensus 6 TC~~C~~Rs~~~~sk~aY~~GvViv~C~gC~~~ 38 (66)
T PF05180_consen 6 TCNKCGTRSAKMFSKQAYHKGVVIVQCPGCKNR 38 (66)
T ss_dssp EETTTTEEEEEEEEHHHHHTSEEEEE-TTS--E
T ss_pred EcCCCCCccceeeCHHHHhCCeEEEECCCCcce
Confidence 46666665442221111 124799999999986
No 35
>TIGR02147 Fsuc_second hypothetical protein, TIGR02147. This family consists of the 40 members of a paralogous protein family in the rumen anaerobe Fibrobacter succinogenes S85. Member proteins are about 270 residues long and appear to lack signal sequences and transmembrane helices. The only perfectly conserved residue is a glycine in an otherwise poorly conserved region, suggesting members are not enzymes. The family is not characterized.
Probab=30.02 E-value=49 Score=29.09 Aligned_cols=24 Identities=21% Similarity=0.516 Sum_probs=23.0
Q ss_pred hhhHHHHHHHHHHHhhCCCCCHHH
Q 030615 105 AYNRFIKEEIQRIKASNPDISHRE 128 (174)
Q Consensus 105 ayN~fmK~ei~riK~~~P~i~HkE 128 (174)
-|..||++...+-|+.+|.+|.|+
T Consensus 9 dYR~fl~d~ye~rk~~~p~fS~R~ 32 (271)
T TIGR02147 9 DYRKYLRDYYEERKKTDPAFSWRF 32 (271)
T ss_pred hHHHHHHHHHHHHhccCcCcCHHH
Confidence 599999999999999999999998
No 36
>COG3712 FecR Fe2+-dicitrate sensor, membrane component [Inorganic ion transport and metabolism / Signal transduction mechanisms]
Probab=29.82 E-value=47 Score=30.33 Aligned_cols=31 Identities=23% Similarity=0.507 Sum_probs=28.0
Q ss_pred HHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 109 FIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 109 fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
-..+|.++|++..|+ |.+||..+..-|....
T Consensus 32 ~~r~af~~W~~~~p~--H~~A~~~~e~lw~~l~ 62 (322)
T COG3712 32 ADRAAFERWRAASPE--HARAWERAERLWQALG 62 (322)
T ss_pred HHHHHHHHHHhcCHH--HHHHHHHHHHHHhhhc
Confidence 357899999999997 9999999999999865
No 37
>PF13408 Zn_ribbon_recom: Recombinase zinc beta ribbon domain
Probab=29.79 E-value=25 Score=22.42 Aligned_cols=13 Identities=38% Similarity=1.060 Sum_probs=10.8
Q ss_pred eeecCCCCCcccc
Q 030615 26 TVRCGHCANLLNV 38 (174)
Q Consensus 26 TVRCGHCtnLlsV 38 (174)
.|+||+|.+-+..
T Consensus 5 ~l~C~~CG~~m~~ 17 (58)
T PF13408_consen 5 LLRCGHCGSKMTR 17 (58)
T ss_pred cEEcccCCcEeEE
Confidence 4799999988765
No 38
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=29.56 E-value=55 Score=26.72 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=24.7
Q ss_pred cccee-----eeeeeecccCCCCcceeeeecCCCCCc
Q 030615 4 NVLVF-----LFFLGVSVPCSSLFNIVTVRCGHCANL 35 (174)
Q Consensus 4 ~~~~C-----~TILaVsVPcssL~~~VTVRCGHCtnL 35 (174)
.|..| ++++.+.+|.=+=.-+.+-.|.||.--
T Consensus 2 ~Cp~C~~~~~~~~~~~~IP~F~evii~sf~C~~CGyk 38 (160)
T smart00709 2 DCPSCGGNGTTRMLLTSIPYFREVIIMSFECEHCGYR 38 (160)
T ss_pred cCCCCCCCCEEEEEEecCCCcceEEEEEEECCCCCCc
Confidence 46666 468889999876666778899999764
No 39
>KOG4520 consensus Predicted coiled-coil protein [General function prediction only]
Probab=27.83 E-value=71 Score=28.18 Aligned_cols=35 Identities=31% Similarity=0.276 Sum_probs=23.7
Q ss_pred hHHHHHHHHHHHhhC----------------CCCCHHHHHHHHHHhhccCC
Q 030615 107 NRFIKEEIQRIKASN----------------PDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 107 N~fmK~ei~riK~~~----------------P~i~HkEaFs~aAknW~~~P 141 (174)
---|||||++||+.. |.-=-|+-|+.+++.=-..|
T Consensus 62 ~~~~keEi~~vkE~E~~al~eALGl~k~stqP~gL~k~~fse~~kR~g~~~ 112 (238)
T KOG4520|consen 62 KEKYKEEILEVKEREQRALAEALGLPKSSTQPSGLLKLTFSEAAKRSGTNT 112 (238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcchhHHHHHHHHhhcCCCH
Confidence 345899999999864 33335777888777643333
No 40
>PF14722 KRAP_IP3R_bind: Ki-ras-induced actin-interacting protein-IP3R-interacting domain
Probab=26.32 E-value=70 Score=26.89 Aligned_cols=28 Identities=21% Similarity=0.456 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHhhCCCCCHHHHHHHH
Q 030615 106 YNRFIKEEIQRIKASNPDISHREAFSTA 133 (174)
Q Consensus 106 yN~fmK~ei~riK~~~P~i~HkEaFs~a 133 (174)
...|++.++|||..|+|...---+|.+.
T Consensus 71 ~~~FL~aQ~qrm~~E~p~~~l~~RFRQ~ 98 (160)
T PF14722_consen 71 IRVFLEAQKQRMDIENPNLALASRFRQL 98 (160)
T ss_pred HHHHHHHHHHHHHhhCccHHHHHHHHHH
Confidence 4579999999999999996655556543
No 41
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=26.28 E-value=1e+02 Score=21.23 Aligned_cols=32 Identities=34% Similarity=0.399 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhhcc
Q 030615 108 RFIKEEIQRIKASNPDISHREAFSTAAKNWAH 139 (174)
Q Consensus 108 ~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~ 139 (174)
.++.+.|..++...|.++-..+...||-|-++
T Consensus 28 ~~i~~~i~~~~~~~~~~~~~~~~vlaaLnla~ 59 (89)
T PF05164_consen 28 ELINEKINEIKKKYPKLSPERLAVLAALNLAD 59 (89)
T ss_dssp HHHHHHHHHHCTTCCTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 57889999999999999999999999987654
No 42
>TIGR01053 LSD1 zinc finger domain, LSD1 subclass. This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC
Probab=25.91 E-value=54 Score=20.33 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=14.2
Q ss_pred ccceeeeeeeecccCCCCcceeeeecCCCCC
Q 030615 4 NVLVFLFFLGVSVPCSSLFNIVTVRCGHCAN 34 (174)
Q Consensus 4 ~~~~C~TILaVsVPcssL~~~VTVRCGHCtn 34 (174)
+|.-|.|+|..- ...-.|||-.|.-
T Consensus 3 ~C~~C~t~L~yP------~gA~~vrCs~C~~ 27 (31)
T TIGR01053 3 VCGGCRTLLMYP------RGASSVRCALCQT 27 (31)
T ss_pred CcCCCCcEeecC------CCCCeEECCCCCe
Confidence 566676666642 2334566666643
No 43
>COG5509 Uncharacterized small protein containing a coiled-coil domain [Function unknown]
Probab=25.12 E-value=73 Score=23.26 Aligned_cols=13 Identities=38% Similarity=0.664 Sum_probs=10.9
Q ss_pred HHHHHHHHHHhhC
Q 030615 109 FIKEEIQRIKASN 121 (174)
Q Consensus 109 fmK~ei~riK~~~ 121 (174)
...+||.|+|++-
T Consensus 36 lLq~EIeRlkAe~ 48 (65)
T COG5509 36 LLQAEIERLKAEL 48 (65)
T ss_pred HHHHHHHHHHHHH
Confidence 5789999999874
No 44
>KOG0493 consensus Transcription factor Engrailed, contains HOX domain [General function prediction only]
Probab=24.28 E-value=39 Score=31.10 Aligned_cols=51 Identities=35% Similarity=0.507 Sum_probs=31.5
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhCC---CCCHHHHHHHHHHhhccCCccccccccC------CccchhhhHHH
Q 030615 97 EKRQRVPSAYNRFIKEEIQRIKASNP---DISHREAFSTAAKNWAHFPHIHFGLKLD------GNKQAKLDKAA 161 (174)
Q Consensus 97 EKRQRvpSayN~fmK~ei~riK~~~P---~i~HkEaFs~aAknW~~~PhihfGl~~~------~~~~~~~d~~~ 161 (174)
|||.|. -|--|+|||||+|.- -|+-+-+=.+|-. +||... +||.+|+....
T Consensus 246 eKRPRT-----AFtaeQL~RLK~EF~enRYlTEqRRQ~La~E---------LgLNEsQIKIWFQNKRAKiKKsT 305 (342)
T KOG0493|consen 246 EKRPRT-----AFTAEQLQRLKAEFQENRYLTEQRRQELAQE---------LGLNESQIKIWFQNKRAKIKKST 305 (342)
T ss_pred hcCccc-----cccHHHHHHHHHHHhhhhhHHHHHHHHHHHH---------hCcCHHHhhHHhhhhhhhhhhcc
Confidence 566664 477899999999864 3455555455433 444422 36777776643
No 45
>COG4357 Zinc finger domain containing protein (CHY type) [Function unknown]
Probab=24.13 E-value=21 Score=28.17 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=17.1
Q ss_pred CCcceeeeecCCCCCcccccc
Q 030615 20 SLFNIVTVRCGHCANLLNVNM 40 (174)
Q Consensus 20 sL~~~VTVRCGHCtnLlsVNm 40 (174)
..++.-.|-||+|-++|+++-
T Consensus 56 ~~~~~~~iiCGvC~~~LT~~E 76 (105)
T COG4357 56 QEFNPKAIICGVCRKLLTRAE 76 (105)
T ss_pred hhcCCccEEhhhhhhhhhHHH
Confidence 467777899999999998753
No 46
>KOG2846 consensus Predicted membrane protein [Function unknown]
Probab=23.32 E-value=2.5e+02 Score=26.07 Aligned_cols=15 Identities=40% Similarity=0.970 Sum_probs=13.0
Q ss_pred CcceeeeecCCCCCc
Q 030615 21 LFNIVTVRCGHCANL 35 (174)
Q Consensus 21 L~~~VTVRCGHCtnL 35 (174)
=++-+|-||-||+-|
T Consensus 237 e~~yi~F~C~~Cn~L 251 (328)
T KOG2846|consen 237 EYEYITFRCPHCNAL 251 (328)
T ss_pred hcCceEEECcccccc
Confidence 467899999999987
No 47
>PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT). MAT alpha 1 is a transcription activator that activates mating-type alpha-specific genes with the help of the MADS-box containing MCM1 transcription factor, which together bind cooperatively to PQ elements upstream of alpha-specific genes. The MCM1-MATalpha1 complex is required for the proper DNA-bending that is needed for transcriptional activation []. Alpha 1 interacts in vivo with STE12, linking expression of alpha-specific genes to the alpha-pheromone (IPR006742 from INTERPRO) response pathway [].; GO: 0000772 mating pheromone activity, 0003677 DNA binding, 0045895 positive regulation of transcription, mating-type specific, 0005634 nucleus
Probab=22.69 E-value=2.3e+02 Score=24.15 Aligned_cols=47 Identities=23% Similarity=0.351 Sum_probs=38.4
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 030615 92 PIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 142 (174)
Q Consensus 92 ~~KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~Ph 142 (174)
..+.++++.|.-.+|+.|+-= .+...|+++.|+.=...++-|...|+
T Consensus 37 ~~~~~~~~kr~lN~Fm~FRsy----y~~~~~~~~Qk~~S~~l~~lW~~dp~ 83 (201)
T PF04769_consen 37 RKRSPEKAKRPLNGFMAFRSY----YSPIFPPLPQKELSGILTKLWEKDPF 83 (201)
T ss_pred ccccccccccchhHHHHHHHH----HHhhcCCcCHHHHHHHHHHHHhCCcc
Confidence 345678888988999999864 33667889999999999999998886
No 48
>KOG4715 consensus SWI/SNF-related matrix-associated actin-dependent regulator of chromatin [Chromatin structure and dynamics]
Probab=21.67 E-value=1.2e+02 Score=28.62 Aligned_cols=48 Identities=31% Similarity=0.576 Sum_probs=41.5
Q ss_pred CCCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 030615 92 PIRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 142 (174)
Q Consensus 92 ~~KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~Ph 142 (174)
+-|||||- .-.|=||-+.=-..+|+.||++---|.=+.+.+.|.+.|.
T Consensus 61 pPkppekp---l~pymrySrkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd 108 (410)
T KOG4715|consen 61 PPKPPEKP---LMPYMRYSRKVWDQVKASNPELKLWEIGKIIGGMWLDLPD 108 (410)
T ss_pred CCCCCCcc---cchhhHHhhhhhhhhhccCcchHHHHHHHHHHHHHhhCcc
Confidence 55888874 4578999999999999999999999999999999998774
No 49
>PRK09774 fec operon regulator FecR; Reviewed
Probab=20.55 E-value=85 Score=27.45 Aligned_cols=29 Identities=10% Similarity=0.104 Sum_probs=25.1
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 111 KEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 111 K~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
.++.++|.+++|+ |++||..+..-|....
T Consensus 33 ~~~f~~Wl~a~p~--H~~A~~~~~~lw~~~~ 61 (319)
T PRK09774 33 EARWQQWYEQDQD--NQWAWQQVENLRNQMG 61 (319)
T ss_pred HHHHHHHHhCCHH--HHHHHHHHHHHHHHhh
Confidence 4678999999997 9999999999997653
No 50
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=20.14 E-value=53 Score=20.90 Aligned_cols=11 Identities=36% Similarity=0.854 Sum_probs=7.8
Q ss_pred CcceeeeecCC
Q 030615 21 LFNIVTVRCGH 31 (174)
Q Consensus 21 L~~~VTVRCGH 31 (174)
|.+-||..|||
T Consensus 8 ~~~Pv~l~CGH 18 (42)
T PF15227_consen 8 FKDPVSLPCGH 18 (42)
T ss_dssp -SSEEE-SSSS
T ss_pred hCCccccCCcC
Confidence 56789999998
Done!