Query 030615
Match_columns 174
No_of_seqs 119 out of 185
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 02:53:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030615.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030615hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1hme_A High mobility group pro 97.9 1.7E-05 5.6E-10 54.0 5.7 47 95-141 3-49 (77)
2 1wz6_A HMG-box transcription f 97.9 2.2E-05 7.5E-10 54.2 5.4 48 94-141 3-50 (82)
3 3nm9_A HMG-D, high mobility gr 97.8 3.5E-05 1.2E-09 52.2 5.3 43 99-141 4-46 (73)
4 2crj_A SWI/SNF-related matrix- 97.8 5.8E-05 2E-09 53.4 6.2 48 94-141 3-50 (92)
5 2cs1_A PMS1 protein homolog 1; 97.8 5.4E-05 1.8E-09 53.6 6.1 47 95-141 4-50 (92)
6 1hry_A Human SRY; DNA, DNA-bin 97.7 3.4E-05 1.2E-09 52.3 4.7 46 96-141 2-47 (76)
7 2e6o_A HMG box-containing prot 97.7 4.3E-05 1.5E-09 53.6 5.4 48 94-141 13-60 (87)
8 1wgf_A Upstream binding factor 97.7 4.1E-05 1.4E-09 54.2 5.1 48 94-141 16-63 (90)
9 2co9_A Thymus high mobility gr 97.7 5.8E-05 2E-09 54.6 5.7 48 94-141 13-60 (102)
10 1wxl_A Single-strand recogniti 97.7 6.4E-05 2.2E-09 50.9 5.5 45 96-140 1-45 (73)
11 1j46_A SRY, sex-determining re 97.7 7.1E-05 2.4E-09 52.2 5.8 46 96-141 2-47 (85)
12 1k99_A Upstream binding factor 97.6 7.4E-05 2.5E-09 54.0 5.3 48 94-141 6-53 (99)
13 4euw_A Transcription factor SO 97.6 9.3E-05 3.2E-09 54.1 5.7 49 93-141 24-72 (106)
14 2eqz_A High mobility group pro 97.6 0.0001 3.6E-09 51.4 5.6 47 95-141 12-60 (86)
15 3f27_D Transcription factor SO 97.6 8.6E-05 2.9E-09 51.0 5.0 45 97-141 5-49 (83)
16 1i11_A Transcription factor SO 97.6 0.00013 4.4E-09 50.2 5.8 44 98-141 4-47 (81)
17 4a3n_A Transcription factor SO 97.5 0.0001 3.6E-09 48.8 4.8 42 100-141 4-45 (71)
18 1ckt_A High mobility group 1 p 97.5 0.00015 5.1E-09 48.3 5.2 42 100-141 3-46 (71)
19 1gt0_D Transcription factor SO 97.5 0.00019 6.4E-09 49.1 5.6 43 99-141 3-45 (80)
20 2gzk_A Sex-determining region 97.4 0.0002 7E-09 54.4 5.8 48 94-141 84-131 (159)
21 3u2b_C Transcription factor SO 97.4 0.00017 5.7E-09 49.0 4.7 42 100-141 4-45 (79)
22 1aab_A High mobility group pro 97.4 0.00014 4.7E-09 50.2 3.7 47 95-141 4-52 (83)
23 2yrq_A High mobility group pro 97.4 0.00026 8.9E-09 54.8 5.7 48 94-141 97-144 (173)
24 2lhj_A High mobility group pro 97.4 9.2E-05 3.1E-09 52.9 2.8 50 93-142 17-68 (97)
25 1cg7_A Protein (NON histone pr 97.3 6.2E-05 2.1E-09 53.5 1.4 48 94-141 16-63 (93)
26 2lef_A LEF-1 HMG, protein (lym 97.3 0.00047 1.6E-08 48.0 5.6 42 100-141 4-45 (86)
27 2d7l_A WD repeat and HMG-box D 97.2 0.00061 2.1E-08 48.1 5.9 43 99-141 6-49 (81)
28 2yrq_A High mobility group pro 97.2 0.00057 2E-08 52.8 5.8 48 94-141 11-60 (173)
29 3tq6_A Transcription factor A, 96.9 0.0008 2.7E-08 54.5 4.1 46 96-141 7-52 (214)
30 3tmm_A Transcription factor A, 96.8 0.00088 3E-08 55.1 4.1 48 94-141 37-84 (238)
31 2gzk_A Sex-determining region 96.7 0.0024 8.3E-08 48.4 5.4 46 96-141 2-47 (159)
32 1l8y_A Upstream binding factor 96.3 0.0056 1.9E-07 44.9 5.1 41 99-140 5-45 (91)
33 3fgh_A Transcription factor A, 96.3 0.0034 1.2E-07 41.5 3.4 38 100-141 4-41 (67)
34 1v64_A Nucleolar transcription 95.3 0.021 7.2E-07 41.9 4.5 39 100-142 19-57 (108)
35 1v63_A Nucleolar transcription 95.2 0.029 1E-06 40.6 5.2 40 101-142 11-50 (101)
36 3tmm_A Transcription factor A, 94.2 0.012 4E-07 48.4 1.0 42 96-141 144-185 (238)
37 3tq6_A Transcription factor A, 94.2 0.012 4.2E-07 47.5 1.0 42 96-141 112-153 (214)
38 2yuk_A Myeloid/lymphoid or mix 93.5 0.0086 2.9E-07 43.7 -1.1 41 99-141 23-63 (90)
39 2cto_A Novel protein; high mob 90.4 0.13 4.6E-06 37.2 2.3 39 100-140 12-53 (93)
40 1wii_A Hypothetical UPF0222 pr 58.3 4.5 0.00015 29.2 1.8 42 3-44 24-65 (85)
41 1x0t_A Ribonuclease P protein 53.5 3.4 0.00012 30.9 0.5 34 3-36 66-104 (120)
42 2k3r_A Ribonuclease P protein 50.8 3.6 0.00012 31.0 0.2 35 3-37 61-100 (123)
43 3uky_C Nuclear CAP-binding pro 34.1 11 0.00037 23.2 0.5 7 97-103 26-32 (32)
44 2e2z_A TIM15; protein import, 31.6 18 0.00061 27.1 1.4 40 3-42 14-56 (100)
45 3he5_B Synzip2; heterodimeric 28.5 24 0.00081 23.5 1.4 21 104-124 2-22 (52)
46 3sja_C Golgi to ER traffic pro 25.2 35 0.0012 23.7 1.9 30 108-137 9-38 (65)
47 1t6f_A Geminin; coiled-coil, c 22.5 26 0.00089 22.2 0.7 13 111-123 20-32 (37)
48 2ph0_A Uncharacterized protein 22.3 28 0.00094 27.5 1.0 22 110-131 1-22 (174)
49 1bb1_B Designed, thermostable 21.5 45 0.0015 20.7 1.6 12 109-120 13-24 (36)
50 3fl2_A E3 ubiquitin-protein li 20.9 22 0.00076 25.1 0.2 10 22-31 63-72 (124)
51 3fgx_A Rbstp2171; structural g 20.7 48 0.0016 25.3 2.0 11 102-112 46-56 (114)
52 2ysl_A Tripartite motif-contai 20.4 23 0.0008 22.3 0.2 10 23-32 32-41 (73)
No 1
>1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A
Probab=97.94 E-value=1.7e-05 Score=53.97 Aligned_cols=47 Identities=26% Similarity=0.432 Sum_probs=42.7
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 95 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 95 PPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
-|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 3 dp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (77)
T 1hme_A 3 DPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 49 (77)
T ss_dssp CSSCCCCCCCTTHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 46666788999999999999999999999999999999999999754
No 2
>1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus}
Probab=97.86 E-value=2.2e-05 Score=54.19 Aligned_cols=48 Identities=21% Similarity=0.308 Sum_probs=43.4
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 94 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 94 KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
.+|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 3 ~~~~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (82)
T 1wz6_A 3 SGSSGARRPMNAFLLFCKRHRSLVRQEHPRLDNRGATKILADWWAVLD 50 (82)
T ss_dssp SSCCCSCCCCCHHHHHHHHHHHHHHHHCSSSCTTHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 356666788999999999999999999999999999999999999754
No 3
>3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A*
Probab=97.78 E-value=3.5e-05 Score=52.23 Aligned_cols=43 Identities=26% Similarity=0.405 Sum_probs=40.1
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 99 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 99 RQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 4 PKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 46 (73)
T 3nm9_A 4 PKRPLSAYALWLNSARESIKRENPGIKVTEVAKRGGELWRAMK 46 (73)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHCS
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 3578999999999999999999999999999999999999865
No 4
>2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus}
Probab=97.76 E-value=5.8e-05 Score=53.44 Aligned_cols=48 Identities=19% Similarity=0.433 Sum_probs=43.3
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 94 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 94 KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
+-|.+-.|-+|||..|+++.-.+|++++|+++..|.-+.++..|+..+
T Consensus 3 kdp~~pKrP~~af~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (92)
T 2crj_A 3 SGSSGPKAPVTGYVRFLNERREQIRTRHPDLPFPEITKMLGAEWSKLQ 50 (92)
T ss_dssp CCCSSSCCCCCHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 446666788999999999999999999999999999999999999754
No 5
>2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.76 E-value=5.4e-05 Score=53.62 Aligned_cols=47 Identities=17% Similarity=0.241 Sum_probs=42.0
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 95 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 95 PPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
.|.+-.|-+|||..|+++.-.+|++++|+++..|.-+.++..|+..+
T Consensus 4 ~p~~pKrP~say~lF~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 50 (92)
T 2cs1_A 4 GSSGIKKPMSASALFVQDHRPQFLIENPKTSLEDATLQIEELWKTLS 50 (92)
T ss_dssp CCSSSCCCCCHHHHHHHHHHHHHHHHCCSSCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 34555678999999999999999999999999999999999999754
No 6
>1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A*
Probab=97.75 E-value=3.4e-05 Score=52.26 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=41.3
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 96 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 96 PEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
|.+-.|-+|||..|+++.-+.|++++|+++..|.-+.++..|+..+
T Consensus 2 p~~pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (76)
T 1hry_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (76)
T ss_dssp -CCCCCCCCHHHHHHHHHHHHHHHHCSCCSSSHHHHHHHHHHHTCC
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHhHHHhCC
Confidence 4555678999999999999999999999999999999999999754
No 7
>2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens}
Probab=97.75 E-value=4.3e-05 Score=53.62 Aligned_cols=48 Identities=19% Similarity=0.271 Sum_probs=43.7
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 94 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 94 KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
+-|.+-.|-++||..|+++.-++|++++|++++.|.-+.++..|+..+
T Consensus 13 kdp~~pKrP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 60 (87)
T 2e6o_A 13 TSPNKCKRPMNAFMLFAKKYRVEYTQMYPGKDNRAISVILGDRWKKMK 60 (87)
T ss_dssp CCCSSCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhhCC
Confidence 456677788999999999999999999999999999999999999754
No 8
>1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.73 E-value=4.1e-05 Score=54.16 Aligned_cols=48 Identities=25% Similarity=0.379 Sum_probs=43.4
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 94 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 94 KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
+.|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 16 kdp~~pKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 63 (90)
T 1wgf_A 16 GGSEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLS 63 (90)
T ss_dssp SCCCCCCCCCCHHHHHHHHTHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 456666788999999999999999999999999999999999999754
No 9
>2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.71 E-value=5.8e-05 Score=54.60 Aligned_cols=48 Identities=27% Similarity=0.472 Sum_probs=43.6
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 94 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 94 KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
+.|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 13 kdp~~pKrP~say~lF~~~~r~~i~~~~P~~~~~eisk~lg~~Wk~ls 60 (102)
T 2co9_A 13 KDPNEPQKPVSAYALFFRDTQAAIKGQNPNATFGEVSKIVASMWDGLG 60 (102)
T ss_dssp CCCCSCCCCCCHHHHTHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHccCC
Confidence 456666788999999999999999999999999999999999999764
No 10
>1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster}
Probab=97.70 E-value=6.4e-05 Score=50.93 Aligned_cols=45 Identities=20% Similarity=0.412 Sum_probs=40.9
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 030615 96 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHF 140 (174)
Q Consensus 96 PEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 140 (174)
|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..
T Consensus 1 P~~pKrP~say~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~l 45 (73)
T 1wxl_A 1 SHMPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL 45 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTC
T ss_pred CccCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhh
Confidence 344567899999999999999999999999999999999999975
No 11
>1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A
Probab=97.69 E-value=7.1e-05 Score=52.17 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=41.5
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 96 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 96 PEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
|.+-.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 2 p~~pKRP~~af~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 47 (85)
T 1j46_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (85)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHTTSC
T ss_pred cCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC
Confidence 4455678999999999999999999999999999999999999754
No 12
>1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1
Probab=97.63 E-value=7.4e-05 Score=54.01 Aligned_cols=48 Identities=19% Similarity=0.407 Sum_probs=43.3
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 94 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 94 KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
+.|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 6 kdp~~PKRP~saf~lF~~~~r~~ik~~~P~~~~~eisk~lg~~Wk~ls 53 (99)
T 1k99_A 6 KHPDFPKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELP 53 (99)
T ss_dssp SSSSSCCCSCCHHHHHHHHHHHHHHTTCTTSCSHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 456666788999999999999999999999999999999999999654
No 13
>4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens}
Probab=97.62 E-value=9.3e-05 Score=54.08 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=42.3
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 93 IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 93 ~KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
.+.|.+-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 24 ~k~~~~pKRP~naf~lF~~~~r~~~k~~~P~~~~~eisk~lg~~Wk~ls 72 (106)
T 4euw_A 24 SKNKPHVKRPMNAFMVWAQAARRKLADQYPHLHNAELSKTLGKLWRLLN 72 (106)
T ss_dssp ----CCCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHTTCC
T ss_pred cCCCCcCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcCC
Confidence 3667777889999999999999999999999999999999999998754
No 14
>2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.60 E-value=0.0001 Score=51.42 Aligned_cols=47 Identities=23% Similarity=0.405 Sum_probs=41.0
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 030615 95 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISH--REAFSTAAKNWAHFP 141 (174)
Q Consensus 95 PPEKRQRvpSayN~fmK~ei~riK~~~P~i~H--kEaFs~aAknW~~~P 141 (174)
-|.+-.|-+|||..|+++.-..|++++|+++. .|.-+.++..|+..+
T Consensus 12 dp~~PKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (86)
T 2eqz_A 12 DPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMS 60 (86)
T ss_dssp CSSSCCCCCCHHHHHHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHSSC
T ss_pred CCCCCCCCCcHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 44555678899999999999999999999974 999999999998754
No 15
>3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A
Probab=97.59 E-value=8.6e-05 Score=51.03 Aligned_cols=45 Identities=24% Similarity=0.461 Sum_probs=39.9
Q ss_pred CCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 97 EKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 97 EKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
.|-.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 5 ~~pKrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 49 (83)
T 3f27_D 5 SRIRRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 49 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 344678999999999999999999999999999999999998754
No 16
>1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.59 E-value=0.00013 Score=50.18 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=40.1
Q ss_pred CCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 98 KRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 98 KRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
+-.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 4 ~pkRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 47 (81)
T 1i11_A 4 HIKRPMNAFMVWAKDERRKILQAFPDMHNSNISKILGSRWKAMT 47 (81)
T ss_dssp CSCCSCCHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhhhhhCC
Confidence 34577999999999999999999999999999999999999754
No 17
>4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0
Probab=97.55 E-value=0.0001 Score=48.85 Aligned_cols=42 Identities=26% Similarity=0.490 Sum_probs=38.6
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 4 krP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (71)
T 4a3n_A 4 RRPMNAFMVWAKDERKRLAQQNPDLHNAELSKMLGKSWKALT 45 (71)
T ss_dssp -CCCCHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 577899999999999999999999999999999999998744
No 18
>1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A
Probab=97.52 E-value=0.00015 Score=48.33 Aligned_cols=42 Identities=21% Similarity=0.342 Sum_probs=38.3
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISH--REAFSTAAKNWAHFP 141 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~H--kEaFs~aAknW~~~P 141 (174)
.|-+|||..|+++.-+.|++++|+++. .|.-+.++..|+..+
T Consensus 3 KrP~say~~F~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls 46 (71)
T 1ckt_A 3 RGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 46 (71)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHhhCC
Confidence 577999999999999999999999976 999999999998643
No 19
>1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B
Probab=97.49 E-value=0.00019 Score=49.14 Aligned_cols=43 Identities=14% Similarity=0.332 Sum_probs=39.6
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 99 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 99 RQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 3 pkrP~~af~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (80)
T 1gt0_D 3 VKRPMNAFMVWSRGQRRKMAQENPKMHNSEISKRLGAEWKLLS 45 (80)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHTTSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 3567999999999999999999999999999999999999754
No 20
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=97.45 E-value=0.0002 Score=54.41 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=42.7
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 94 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 94 KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
+-|.+-.|-+|||..|+++.-.+|++++|+++..|.-+.++..|+..+
T Consensus 84 kdp~~pKrp~say~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 131 (159)
T 2gzk_A 84 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 131 (159)
T ss_dssp CCTTCCCCCCCHHHHHHHHHHHHHHHHCSCCCHHHHHHHHHHHHHHSC
T ss_pred cccccccccccccchhhHhhHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 345555678999999999999999999999999999999999999754
No 21
>3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1
Probab=97.44 E-value=0.00017 Score=49.03 Aligned_cols=42 Identities=21% Similarity=0.375 Sum_probs=39.0
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
.|-+|||..|+++.-..|++++|++++.|.-+.++..|+..+
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~p~~~~~eisk~lg~~Wk~ls 45 (79)
T 3u2b_C 4 KRPMNAFMVWSQIERRKIMEQSPDMHNAEISKRLGKRWKLLK 45 (79)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCcCCCHHHHHHHHHHHHHhCC
Confidence 477899999999999999999999999999999999998644
No 22
>1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1
Probab=97.38 E-value=0.00014 Score=50.24 Aligned_cols=47 Identities=23% Similarity=0.402 Sum_probs=41.0
Q ss_pred CCCCCCCCchhhhHHHHHHHHHHHhhCCCCCH--HHHHHHHHHhhccCC
Q 030615 95 PPEKRQRVPSAYNRFIKEEIQRIKASNPDISH--REAFSTAAKNWAHFP 141 (174)
Q Consensus 95 PPEKRQRvpSayN~fmK~ei~riK~~~P~i~H--kEaFs~aAknW~~~P 141 (174)
-|.+-.|-+|||..|+++.-..|++++|+++. .|.-+.++..|+..+
T Consensus 4 dp~~PKrP~say~lF~~~~r~~~~~~~p~~~~~~~eisk~lg~~Wk~ls 52 (83)
T 1aab_A 4 DPKKPRGKMSSYAFFVQTSREEHKKKHPDASVNFSEFSKKCSERWKTMS 52 (83)
T ss_dssp CTTCCCCCCCHHHHHHHHHHHHHTTSCTTTCCCSSSSHHHHHHHHTTSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCcHHHHHHHHHHHHHhCC
Confidence 45555788999999999999999999999975 999999999998643
No 23
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.38 E-value=0.00026 Score=54.78 Aligned_cols=48 Identities=25% Similarity=0.441 Sum_probs=42.8
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 94 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 94 KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
+-|.+-.|-+|||..|+++...+|++++|+++..|.-+.++..|+..+
T Consensus 97 kdp~~pKrP~saf~lf~~~~r~~~~~~~p~~~~~ei~k~lg~~Wk~ls 144 (173)
T 2yrq_A 97 KDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTA 144 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHSC
T ss_pred cCCccccCcccHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 345556778999999999999999999999999999999999999754
No 24
>2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis}
Probab=97.36 E-value=9.2e-05 Score=52.87 Aligned_cols=50 Identities=26% Similarity=0.381 Sum_probs=44.8
Q ss_pred CCCCCCCCCCchhhhHHHHHHHHHHHhhCCCCC--HHHHHHHHHHhhccCCc
Q 030615 93 IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDIS--HREAFSTAAKNWAHFPH 142 (174)
Q Consensus 93 ~KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~--HkEaFs~aAknW~~~Ph 142 (174)
.+.|.+-.|-+|||..|+++.-.+|++++|+++ ..|.-+.++..|+..+.
T Consensus 17 ~kdp~~pKrP~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls~ 68 (97)
T 2lhj_A 17 KKDPNAPKRALSSYMFFAKEKRVEIIAENPEIAKDVAAIGKMIGAAWNALSD 68 (97)
T ss_dssp TSCCCCCCCCCCSSTHHHHGGGGGHHHHCTTSTTCSSHHHHHHHHTSSSSCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCccHHHHHHHHHHHHHhCCH
Confidence 456777788999999999999999999999999 99999999999997543
No 25
>1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A
Probab=97.31 E-value=6.2e-05 Score=53.53 Aligned_cols=48 Identities=25% Similarity=0.477 Sum_probs=43.3
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 94 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 94 KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
+.|.+-.|-+|||..|+++.-..|++++|+++..|.-+.++..|+..+
T Consensus 16 kdp~~pKrP~saf~lF~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 63 (93)
T 1cg7_A 16 KDPNAPKRALSAYMFFANENRDIVRSENPDITFGQVGKKLGEKWKALT 63 (93)
T ss_dssp CCSSCCCSCCCHHHHHHHHHTSTTTTTCTTSCHHHHTTTHHHHHHTTH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHhCC
Confidence 456666788999999999999999999999999999999999999753
No 26
>2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1
Probab=97.28 E-value=0.00047 Score=47.95 Aligned_cols=42 Identities=12% Similarity=0.204 Sum_probs=39.1
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
.|-+|||..|+++.-+.|++++|++++.|.-+.++..|+..+
T Consensus 4 KRP~naf~lf~~~~r~~~~~~~P~~~~~eisk~lg~~Wk~ls 45 (86)
T 2lef_A 4 KKPLNAFMLYMKEMRANVVAESTLKESAAINQILGRRWHALS 45 (86)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTSC
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhcCC
Confidence 467999999999999999999999999999999999999754
No 27
>2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.24 E-value=0.00061 Score=48.12 Aligned_cols=43 Identities=16% Similarity=0.345 Sum_probs=39.1
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCC-HHHHHHHHHHhhccCC
Q 030615 99 RQRVPSAYNRFIKEEIQRIKASNPDIS-HREAFSTAAKNWAHFP 141 (174)
Q Consensus 99 RQRvpSayN~fmK~ei~riK~~~P~i~-HkEaFs~aAknW~~~P 141 (174)
-.|-+|||..|+++.-..||++||+++ ..|.-+.++..|+..+
T Consensus 6 PKRP~say~lF~~e~R~~ik~~~P~~~~~~eisK~lge~Wk~ls 49 (81)
T 2d7l_A 6 SGRPKTGFQMWLEENRSNILSDNPDFSDEADIIKEGMIRFRVLS 49 (81)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHHCTTCCSHHHHHHHHHHHHSSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHcCC
Confidence 356799999999999999999999998 9999999999998653
No 28
>2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.19 E-value=0.00057 Score=52.82 Aligned_cols=48 Identities=21% Similarity=0.396 Sum_probs=42.6
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCC--CCHHHHHHHHHHhhccCC
Q 030615 94 RPPEKRQRVPSAYNRFIKEEIQRIKASNPD--ISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 94 KPPEKRQRvpSayN~fmK~ei~riK~~~P~--i~HkEaFs~aAknW~~~P 141 (174)
+-|.+-.|-+|||..|+++....|++++|+ ++-.|..+.++..|+..+
T Consensus 11 ~dp~~PKrp~say~lF~~~~r~~~k~~~p~~~~~~~eisk~lg~~Wk~ls 60 (173)
T 2yrq_A 11 GDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMS 60 (173)
T ss_dssp CCSSSCCCCCCHHHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHhCC
Confidence 456666788999999999999999999999 689999999999998754
No 29
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=96.87 E-value=0.0008 Score=54.53 Aligned_cols=46 Identities=33% Similarity=0.550 Sum_probs=41.3
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 96 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 96 PEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
|.+-.|-+|||..|+++....|++++|+++..|..+.++..|+..+
T Consensus 7 p~~PKrP~say~lF~~~~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 52 (214)
T 3tq6_A 7 ASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 52 (214)
T ss_dssp HHSCCCCCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccC
Confidence 3444578999999999999999999999999999999999999765
No 30
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=96.82 E-value=0.00088 Score=55.09 Aligned_cols=48 Identities=31% Similarity=0.497 Sum_probs=43.1
Q ss_pred CCCCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 94 RPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 94 KPPEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
+-|.+-.|-+|||..|+++....|+++||+++..|..+.++..|+..+
T Consensus 37 ~~p~~PKrP~say~lF~~e~r~~~k~~~P~~~~~eisk~lge~Wk~Ls 84 (238)
T 3tmm_A 37 VLASCPKKPVSSYLRFSKEQLPIFKAQNPDAKTTELIRRIAQRWRELP 84 (238)
T ss_dssp HHHHSCCCCCCHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhCC
Confidence 345666788999999999999999999999999999999999999754
No 31
>2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1
Probab=96.69 E-value=0.0024 Score=48.43 Aligned_cols=46 Identities=13% Similarity=0.346 Sum_probs=42.0
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 96 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 96 PEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
|++..|-++||-.|++++-.+|+.++|+++..|.-+.++..|+..+
T Consensus 2 ~~~~Krp~~af~~~~~~~~~ki~~~~P~~~~~eisk~lg~~Wk~ls 47 (159)
T 2gzk_A 2 QDRVKRPMNAFIVWSRDQRRKMALENPRMRNSEISKQLGYQWKMLT 47 (159)
T ss_dssp TTCCCCCCCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHSC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHhh
Confidence 5666788999999999999999999999999999999999998654
No 32
>1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A
Probab=96.31 E-value=0.0056 Score=44.92 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=37.3
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccC
Q 030615 99 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHF 140 (174)
Q Consensus 99 RQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~ 140 (174)
.-|-+|||+.|+.+...++++++|+ +..|.-+.+...|+..
T Consensus 5 PKrP~SAy~lf~~~~r~~~k~~~p~-~~~evsK~lGe~Wk~l 45 (91)
T 1l8y_A 5 PESPKRAEEIWQQSVIGDYLARFKN-DRVKALKAMEMTWNNM 45 (91)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHTTS-THHHHHHHHHHHHHTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC
Confidence 3467999999999999999999999 9999999999999974
No 33
>3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens}
Probab=96.26 E-value=0.0034 Score=41.51 Aligned_cols=38 Identities=34% Similarity=0.675 Sum_probs=34.0
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
.|-+|||..|+++.-..|+..+| .|..+.++..|+..+
T Consensus 4 KrP~say~~F~~~~r~~~k~~~p----~ei~k~lg~~Wk~ls 41 (67)
T 3fgh_A 4 KRPRSAYNVYVAERFQEAKGDSP----QEKLKTVKENWKNLS 41 (67)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSSH----HHHHHHHHHHHHTCC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCH----HHHHHHHHHHHhhCC
Confidence 56789999999999999999887 599999999999754
No 34
>1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.25 E-value=0.021 Score=41.86 Aligned_cols=39 Identities=18% Similarity=0.488 Sum_probs=35.1
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 142 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~Ph 142 (174)
.|-+|||..|+++.-..|| +++..|.-+.++..|+..+.
T Consensus 19 KrP~say~lF~~e~r~~~k----~~~~~eisk~lg~~Wk~Ls~ 57 (108)
T 1v64_A 19 KPPPNSYSLYCAELMANMK----DVPSTERMVLCSQQWKLLSQ 57 (108)
T ss_dssp CCCSSHHHHHHHHHHHHCT----TSCHHHHHHHHHHHHHHSCH
T ss_pred CCCCCHHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHhCCH
Confidence 5678999999999999988 89999999999999998654
No 35
>1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1
Probab=95.25 E-value=0.029 Score=40.55 Aligned_cols=40 Identities=13% Similarity=0.341 Sum_probs=31.8
Q ss_pred CCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCCc
Q 030615 101 RVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPH 142 (174)
Q Consensus 101 RvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~Ph 142 (174)
|-+|||..|+++.++ +..+++++..|.-+.++..|+..+.
T Consensus 11 rP~say~lF~~e~~~--~p~~~~~~~~eisK~lge~Wk~ls~ 50 (101)
T 1v63_A 11 PPMNGYQKFSQELLS--NGELNHLPLKERMVEIGSRWQRISQ 50 (101)
T ss_dssp CCSSSHHHHHHHHHH--HCTTTTSCHHHHHHHHHHHHTTSCH
T ss_pred CCCCHHHHHHHHHHh--CCCCCCCCHHHHHHHHHHHHHhCCH
Confidence 358999999999964 3445557889999999999997543
No 36
>3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens}
Probab=94.25 E-value=0.012 Score=48.39 Aligned_cols=42 Identities=33% Similarity=0.600 Sum_probs=36.7
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 96 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 96 PEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
|.+-.|-+|||+.|+++...+|+.++|+ |..+.++..|+..+
T Consensus 144 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 185 (238)
T 3tmm_A 144 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 185 (238)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSCCSSHH----HHHHHHHHHHHTCC
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhccCHH----HHHHHHHHHHHhCC
Confidence 4555788999999999999999988876 89999999999864
No 37
>3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens}
Probab=94.17 E-value=0.012 Score=47.53 Aligned_cols=42 Identities=33% Similarity=0.600 Sum_probs=36.4
Q ss_pred CCCCCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 96 PEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 96 PEKRQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
|.+-.|-+|||..|+++...+|+.++|+ |..+.++..|+..+
T Consensus 112 p~~PKrP~say~lF~~e~r~~~k~~~p~----ei~k~lg~~Wk~ls 153 (214)
T 3tq6_A 112 LGKPKRPRSAYNVYVAERFQEAKGDSPQ----EKLKTVKENWKNLS 153 (214)
T ss_dssp TTCCCCCCCHHHHHHHHHTTTSSCSSHH----HHHHHHHHHHHTCC
T ss_pred ccCcccccchhhhhHHHHHHhhccCCHH----HHHHHHHHHHHcCC
Confidence 4445678999999999999999988876 99999999999865
No 38
>2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=93.46 E-value=0.0086 Score=43.67 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=33.6
Q ss_pred CCCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHHHHhhccCC
Q 030615 99 RQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFP 141 (174)
Q Consensus 99 RQRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~aAknW~~~P 141 (174)
-.|-||||-.|+.++-.+||++||+++ +.|..+|+.|+..+
T Consensus 23 PKRp~sAf~lf~~e~R~kik~enP~~s--~~~~eIse~Wk~ls 63 (90)
T 2yuk_A 23 GEMATVAPVLYTNINFPNLKEEFPDWT--TRVKQIAKLWRKAS 63 (90)
T ss_dssp GGGCSSSHHHHHHHHCTTHHHHCCSHH--HHHHHHHHHHHHSC
T ss_pred CCCCccHHHHHHHHhHHHHHHHCcCcc--chHHHHHHHHHcCC
Confidence 367899999999999999999999985 33555669998743
No 39
>2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.41 E-value=0.13 Score=37.24 Aligned_cols=39 Identities=18% Similarity=0.429 Sum_probs=33.8
Q ss_pred CCCchhhhHHHHHHHHHHHhhCCCCCHHHHHHHH---HHhhccC
Q 030615 100 QRVPSAYNRFIKEEIQRIKASNPDISHREAFSTA---AKNWAHF 140 (174)
Q Consensus 100 QRvpSayN~fmK~ei~riK~~~P~i~HkEaFs~a---AknW~~~ 140 (174)
.|-+|||..|+++.-.+||.+ +++-.|.=+.. ...|+..
T Consensus 12 KRP~sAf~lF~~e~R~~ik~e--~~~~~eisK~l~~cGe~Wk~l 53 (93)
T 2cto_A 12 KASRNAYYFFVQEKIPELRRR--GLPVARVADAIPYCSSDWALL 53 (93)
T ss_dssp CSSCCHHHHHHHTTHHHHHHH--TCCCSSHHHHTGGGHHHHHHS
T ss_pred CCCCCHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcC
Confidence 467999999999999999998 78888877777 9999874
No 40
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=58.26 E-value=4.5 Score=29.23 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=34.0
Q ss_pred cccceeeeeeeecccCCCCcceeeeecCCCCCcccccccccc
Q 030615 3 TNVLVFLFFLGVSVPCSSLFNIVTVRCGHCANLLNVNMVSAL 44 (174)
Q Consensus 3 ~~~~~C~TILaVsVPcssL~~~VTVRCGHCtnLlsVNm~~ll 44 (174)
-+|.|||..=+|+|=...--.+-++.|+-|.---..++..|.
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~~~~i~~L~ 65 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEFQTPITYLS 65 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEEEEECCSSC
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeEEeccCccC
Confidence 479999999888888888888999999999866555555443
No 41
>1x0t_A Ribonuclease P protein component 4; pyrococcus horikoshii OT3, hydrolase; 1.60A {Pyrococcus horikoshii} PDB: 2zae_B
Probab=53.47 E-value=3.4 Score=30.89 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=24.5
Q ss_pred cccceeeeeeeecccCCC-Cc----ceeeeecCCCCCcc
Q 030615 3 TNVLVFLFFLGVSVPCSS-LF----NIVTVRCGHCANLL 36 (174)
Q Consensus 3 ~~~~~C~TILaVsVPcss-L~----~~VTVRCGHCtnLl 36 (174)
+-|--|+|+|.=|+=|+- +- ..|.++|++|.+.-
T Consensus 66 ~~Ck~C~s~LiPG~t~~vri~~~~~~~vv~tCl~Cg~~k 104 (120)
T 1x0t_A 66 RYCKRCHTFLIPGVNARVRLRTKRMPHVVITCLECGYIM 104 (120)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTCCEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEE
Confidence 458899999986665431 11 35899999998764
No 42
>2k3r_A Ribonuclease P protein component 4; PFU RPP21, RNAse P, hydrolase, tRNA processing; NMR {Pyrococcus furiosus} PDB: 2ki7_B
Probab=50.79 E-value=3.6 Score=31.05 Aligned_cols=35 Identities=17% Similarity=0.341 Sum_probs=24.7
Q ss_pred cccceeeeeeeecccCCC-C----cceeeeecCCCCCccc
Q 030615 3 TNVLVFLFFLGVSVPCSS-L----FNIVTVRCGHCANLLN 37 (174)
Q Consensus 3 ~~~~~C~TILaVsVPcss-L----~~~VTVRCGHCtnLls 37 (174)
+-|--|+++|.=|+=|+- + -..|.++|++|.+.--
T Consensus 61 ~~Ck~C~s~LIPG~t~~vri~~~~k~~vv~tCl~Cg~~kR 100 (123)
T 2k3r_A 61 RYCKKCHAFLVPGINARVRLRQKRMPHIVVKCLECGHIMR 100 (123)
T ss_dssp SBCTTTCCBCCBTTTEEEEEECSSSCEEEEEETTTTEEEE
T ss_pred HhccCCCCEeECCCceEEEEecCCccEEEEECCCCCCEEE
Confidence 458899999986654431 1 1359999999987643
No 43
>3uky_C Nuclear CAP-binding protein complex subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding; 2.35A {Saccharomyces cerevisiae}
Probab=34.12 E-value=11 Score=23.19 Aligned_cols=7 Identities=71% Similarity=1.213 Sum_probs=5.9
Q ss_pred CCCCCCc
Q 030615 97 EKRQRVP 103 (174)
Q Consensus 97 EKRQRvp 103 (174)
-||||+|
T Consensus 26 pKRQR~P 32 (32)
T 3uky_C 26 PKRQRIP 32 (32)
T ss_pred cccccCC
Confidence 4899998
No 44
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=31.64 E-value=18 Score=27.12 Aligned_cols=40 Identities=10% Similarity=0.044 Sum_probs=22.2
Q ss_pred cccceeeeeeeecccCCC-CcceeeeecCCCCCc--ccccccc
Q 030615 3 TNVLVFLFFLGVSVPCSS-LFNIVTVRCGHCANL--LNVNMVS 42 (174)
Q Consensus 3 ~~~~~C~TILaVsVPcss-L~~~VTVRCGHCtnL--lsVNm~~ 42 (174)
.-|+.|+|-=+-.+=-.. =--+|-|+|..|.|. +.=|++-
T Consensus 14 FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~HlIaDnLgw 56 (100)
T 2e2z_A 14 FTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRHLIADHLKI 56 (100)
T ss_dssp EEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEEESCCSSCS
T ss_pred EEccCCCCcchhhcCHHHhhCCEEEEEcCCCccceEeehhhhh
Confidence 347777664332211001 124799999999996 3334443
No 45
>3he5_B Synzip2; heterodimeric coiled-coil, de novo protein; 1.75A {Artificial gene}
Probab=28.47 E-value=24 Score=23.48 Aligned_cols=21 Identities=33% Similarity=0.616 Sum_probs=17.6
Q ss_pred hhhhHHHHHHHHHHHhhCCCC
Q 030615 104 SAYNRFIKEEIQRIKASNPDI 124 (174)
Q Consensus 104 SayN~fmK~ei~riK~~~P~i 124 (174)
||-|.|++..|+|+|..|-.+
T Consensus 2 sarnaylrkkiarlkkdnlql 22 (52)
T 3he5_B 2 SARNAYLRKKIARLKKDNLQL 22 (52)
T ss_dssp CSHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHhhhhhhh
Confidence 678999999999999877543
No 46
>3sja_C Golgi to ER traffic protein 1; coiled-coil, receptor complex, TA-protein biogenesis, GET PA hydrolase-transport protein complex; 3.00A {Saccharomyces cerevisiae} PDB: 3sjc_C
Probab=25.24 E-value=35 Score=23.74 Aligned_cols=30 Identities=23% Similarity=0.205 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Q 030615 108 RFIKEEIQRIKASNPDISHREAFSTAAKNW 137 (174)
Q Consensus 108 ~fmK~ei~riK~~~P~i~HkEaFs~aAknW 137 (174)
+=++.||.+|+.+.-.||-.+-|..=||+=
T Consensus 9 ~~l~~E~~~lk~E~~stSaQDeFAKWaKL~ 38 (65)
T 3sja_C 9 LAKVKERHELKEFNNSISAQDNYAKWTKNN 38 (65)
T ss_dssp HHHHHHHHHHHHHHTTSCTTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHH
Confidence 447899999999999999999998766653
No 47
>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} SCOP: h.1.28.1
Probab=22.50 E-value=26 Score=22.16 Aligned_cols=13 Identities=38% Similarity=0.647 Sum_probs=10.3
Q ss_pred HHHHHHHHhhCCC
Q 030615 111 KEEIQRIKASNPD 123 (174)
Q Consensus 111 K~ei~riK~~~P~ 123 (174)
.+||+|||++|-+
T Consensus 20 deeIa~Lk~eN~e 32 (37)
T 1t6f_A 20 DNEIARLKKENKE 32 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHH
Confidence 3799999998743
No 48
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=22.30 E-value=28 Score=27.52 Aligned_cols=22 Identities=18% Similarity=0.314 Sum_probs=17.8
Q ss_pred HHHHHHHHHhhCCCCCHHHHHH
Q 030615 110 IKEEIQRIKASNPDISHREAFS 131 (174)
Q Consensus 110 mK~ei~riK~~~P~i~HkEaFs 131 (174)
|+++|..+++++|++..++.-.
T Consensus 1 m~~~~~~~~~~~P~~~~~dla~ 22 (174)
T 2ph0_A 1 MTMTLNELLATNPDGTLEDIAG 22 (174)
T ss_dssp -CCCHHHHHHTCCCSCHHHHHH
T ss_pred ChHHHHHHHHHCcCchHHHHHH
Confidence 6778999999999998887543
No 49
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=21.53 E-value=45 Score=20.69 Aligned_cols=12 Identities=58% Similarity=0.656 Sum_probs=8.5
Q ss_pred HHHHHHHHHHhh
Q 030615 109 FIKEEIQRIKAS 120 (174)
Q Consensus 109 fmK~ei~riK~~ 120 (174)
-|.||||.||++
T Consensus 13 aieeeiqaikee 24 (36)
T 1bb1_B 13 AIEEEIQAIKEE 24 (36)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 466778877765
No 50
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=20.87 E-value=22 Score=25.12 Aligned_cols=10 Identities=40% Similarity=0.826 Sum_probs=7.3
Q ss_pred cceeeeecCC
Q 030615 22 FNIVTVRCGH 31 (174)
Q Consensus 22 ~~~VTVRCGH 31 (174)
.+.|+..|||
T Consensus 63 ~~p~~~~CgH 72 (124)
T 3fl2_A 63 FRPITTVCQH 72 (124)
T ss_dssp SSEEECTTSC
T ss_pred cCcEEeeCCC
Confidence 3567778888
No 51
>3fgx_A Rbstp2171; structural genomics, PSI-2, Pro structure initiative, midwest center for structural genomic structural genomics; 2.90A {Bacillus stearothermophilus}
Probab=20.70 E-value=48 Score=25.32 Aligned_cols=11 Identities=45% Similarity=0.501 Sum_probs=9.5
Q ss_pred CchhhhHHHHH
Q 030615 102 VPSAYNRFIKE 112 (174)
Q Consensus 102 vpSayN~fmK~ 112 (174)
.|..||||+++
T Consensus 46 t~~~YnRyi~t 56 (114)
T 3fgx_A 46 KVSDISRFTKE 56 (114)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 68899999985
No 52
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=20.40 E-value=23 Score=22.28 Aligned_cols=10 Identities=50% Similarity=0.973 Sum_probs=6.9
Q ss_pred ceeeeecCCC
Q 030615 23 NIVTVRCGHC 32 (174)
Q Consensus 23 ~~VTVRCGHC 32 (174)
+.|+..|||-
T Consensus 32 ~~~~~~CgH~ 41 (73)
T 2ysl_A 32 KPVTIDCGHN 41 (73)
T ss_dssp SEEECTTCCE
T ss_pred CeEEcCCCCh
Confidence 4566688883
Done!