Query 030618
Match_columns 174
No_of_seqs 122 out of 1098
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 16:28:33 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3035 Isoamyl acetate-hydrol 99.9 9E-26 1.9E-30 175.0 12.9 145 1-147 82-226 (245)
2 cd01838 Isoamyl_acetate_hydrol 99.8 6.4E-19 1.4E-23 135.2 13.3 115 12-127 85-199 (199)
3 cd01841 NnaC_like NnaC (CMP-Ne 99.8 3.3E-18 7.2E-23 129.7 12.2 108 10-127 66-174 (174)
4 cd01828 sialate_O-acetylestera 99.7 2.5E-17 5.5E-22 124.4 12.6 105 10-127 63-168 (169)
5 cd04501 SGNH_hydrolase_like_4 99.7 3.1E-17 6.8E-22 125.3 11.5 108 10-127 74-183 (183)
6 cd01839 SGNH_arylesterase_like 99.7 4E-17 8.7E-22 127.4 11.9 112 5-129 88-207 (208)
7 cd01827 sialate_O-acetylestera 99.7 8.2E-17 1.8E-21 123.3 11.5 102 12-127 86-187 (188)
8 cd01821 Rhamnogalacturan_acety 99.7 4.6E-17 9.9E-22 126.1 10.0 104 11-127 86-198 (198)
9 cd04502 SGNH_hydrolase_like_7 99.7 1.4E-16 3E-21 120.7 11.3 109 5-127 59-171 (171)
10 cd01825 SGNH_hydrolase_peri1 S 99.7 2E-16 4.4E-21 120.8 11.2 110 12-130 74-188 (189)
11 cd01834 SGNH_hydrolase_like_2 99.7 2.1E-16 4.5E-21 120.5 9.3 108 11-125 81-190 (191)
12 cd01836 FeeA_FeeB_like SGNH_hy 99.7 4.9E-16 1.1E-20 119.4 11.3 108 10-128 82-190 (191)
13 cd01820 PAF_acetylesterase_lik 99.7 1E-15 2.2E-20 120.3 11.3 112 5-129 98-212 (214)
14 cd01832 SGNH_hydrolase_like_1 99.7 8.3E-16 1.8E-20 117.3 10.5 100 11-125 84-184 (185)
15 cd01829 SGNH_hydrolase_peri2 S 99.7 1.4E-15 3E-20 117.5 11.3 99 14-129 90-200 (200)
16 cd01835 SGNH_hydrolase_like_3 99.7 8.3E-16 1.8E-20 118.4 9.8 100 11-125 91-191 (193)
17 cd01833 XynB_like SGNH_hydrola 99.6 3.2E-15 6.9E-20 111.5 10.1 103 5-127 49-157 (157)
18 cd01844 SGNH_hydrolase_like_6 99.6 6.2E-15 1.3E-19 112.5 8.6 101 16-127 75-177 (177)
19 cd01822 Lysophospholipase_L1_l 99.6 2.6E-14 5.6E-19 108.0 11.6 103 5-128 73-177 (177)
20 cd04506 SGNH_hydrolase_YpmR_li 99.6 1.4E-14 3.1E-19 112.4 10.2 102 13-125 100-203 (204)
21 PRK10528 multifunctional acyl- 99.5 7.7E-14 1.7E-18 108.1 11.7 105 5-130 80-186 (191)
22 cd01840 SGNH_hydrolase_yrhL_li 99.5 1.4E-13 3.1E-18 102.6 8.9 86 16-127 64-150 (150)
23 cd01830 XynE_like SGNH_hydrola 99.5 1.5E-13 3.1E-18 107.2 8.0 101 10-124 97-201 (204)
24 cd01831 Endoglucanase_E_like E 99.5 4.7E-13 1E-17 101.3 9.7 103 5-128 64-169 (169)
25 cd01823 SEST_like SEST_like. A 99.4 9.7E-13 2.1E-17 105.7 9.5 115 11-125 123-258 (259)
26 cd01842 SGNH_hydrolase_like_5 99.4 4.4E-12 9.5E-17 96.7 11.2 113 12-127 69-182 (183)
27 PF13472 Lipase_GDSL_2: GDSL-l 99.4 2.8E-12 6.1E-17 95.4 9.2 98 11-119 81-179 (179)
28 cd00229 SGNH_hydrolase SGNH_hy 99.4 1.2E-11 2.5E-16 91.3 10.9 99 12-125 84-186 (187)
29 PF14606 Lipase_GDSL_3: GDSL-l 99.2 4.7E-11 1E-15 91.6 5.5 102 12-128 71-178 (178)
30 COG2755 TesA Lysophospholipase 99.1 1.2E-09 2.7E-14 85.3 9.7 110 9-130 93-211 (216)
31 PF00657 Lipase_GDSL: GDSL-lik 99.0 5.5E-10 1.2E-14 86.9 6.7 113 9-123 103-234 (234)
32 cd01824 Phospholipase_B_like P 99.0 3.9E-09 8.4E-14 87.1 10.5 118 12-129 142-285 (288)
33 COG2845 Uncharacterized protei 98.9 7.5E-09 1.6E-13 85.3 9.9 100 14-130 208-320 (354)
34 cd01826 acyloxyacyl_hydrolase_ 98.8 4.7E-08 1E-12 80.7 9.8 116 9-125 143-304 (305)
35 cd01846 fatty_acyltransferase_ 98.7 1.6E-07 3.4E-12 75.9 9.9 110 12-125 124-269 (270)
36 cd01847 Triacylglycerol_lipase 98.2 1.6E-05 3.5E-10 64.9 9.5 108 16-127 138-281 (281)
37 PF04914 DltD_C: DltD C-termin 98.0 7.7E-05 1.7E-09 54.6 9.9 94 19-129 36-129 (130)
38 cd01837 SGNH_plant_lipase_like 98.0 4.1E-05 8.9E-10 63.5 9.3 109 16-125 161-313 (315)
39 PLN03156 GDSL esterase/lipase; 97.9 0.00012 2.7E-09 62.0 10.9 118 12-130 184-349 (351)
40 PF08885 GSCFA: GSCFA family; 97.9 0.00014 2.9E-09 59.0 9.5 103 12-121 145-249 (251)
41 PRK15381 pathogenicity island 97.7 0.00025 5.4E-09 61.3 9.3 107 18-130 260-404 (408)
42 PF13839 PC-Esterase: GDSL/SGN 97.2 0.0054 1.2E-07 48.8 11.0 119 9-127 125-261 (263)
43 COG3240 Phospholipase/lecithin 97.1 0.003 6.5E-08 53.6 8.4 103 20-129 195-335 (370)
44 PF07611 DUF1574: Protein of u 96.7 0.0061 1.3E-07 51.6 7.1 93 18-127 251-343 (345)
45 PF04311 DUF459: Protein of un 96.5 0.0027 5.9E-08 53.3 3.4 94 14-129 132-239 (327)
46 KOG3670 Phospholipase [Lipid t 96.2 0.18 4E-06 43.2 12.7 117 11-129 208-352 (397)
47 PF03629 DUF303: Domain of unk 95.6 0.19 4.1E-06 40.3 10.3 92 16-129 160-254 (255)
48 PF05141 DIT1_PvcA: Pyoverdine 89.9 3.2 6.9E-05 34.3 8.9 67 15-93 39-109 (278)
49 PF14286 DHHW: DHHW protein 89.7 2.4 5.2E-05 36.5 8.4 44 84-129 211-255 (378)
50 TIGR02171 Fb_sc_TIGR02171 Fibr 83.5 17 0.00037 34.8 10.9 104 17-129 806-910 (912)
51 COG3966 DltD Protein involved 82.8 13 0.00028 32.0 8.9 95 19-130 295-390 (415)
52 PF02581 TMP-TENI: Thiamine mo 81.5 5 0.00011 30.5 5.8 42 67-115 39-82 (180)
53 PRK12465 xylose isomerase; Pro 78.4 15 0.00033 32.1 8.1 74 11-91 117-196 (445)
54 TIGR02630 xylose_isom_A xylose 78.3 16 0.00035 31.9 8.3 74 11-91 106-185 (434)
55 COG0352 ThiE Thiamine monophos 78.2 11 0.00023 29.9 6.8 38 70-114 51-90 (211)
56 PRK06512 thiamine-phosphate py 78.2 8.7 0.00019 30.5 6.3 42 67-114 54-96 (221)
57 PRK03512 thiamine-phosphate py 78.0 12 0.00026 29.4 7.1 39 69-114 48-88 (211)
58 PRK05474 xylose isomerase; Pro 77.5 17 0.00037 31.9 8.2 74 11-91 107-186 (437)
59 PRK08999 hypothetical protein; 75.4 17 0.00037 29.8 7.6 85 21-115 120-214 (312)
60 PRK02615 thiamine-phosphate py 72.7 20 0.00044 30.5 7.5 40 68-114 185-226 (347)
61 PF06935 DUF1284: Protein of u 71.2 7.7 0.00017 27.0 3.9 29 15-44 4-32 (103)
62 TIGR01233 lacG 6-phospho-beta- 71.2 57 0.0012 28.9 10.2 80 2-96 80-159 (467)
63 PLN02923 xylose isomerase 71.0 52 0.0011 29.0 9.5 132 11-154 151-288 (478)
64 PF03796 DnaB_C: DnaB-like hel 65.1 21 0.00046 28.4 5.9 29 65-93 151-179 (259)
65 TIGR00693 thiE thiamine-phosph 64.2 35 0.00076 25.8 6.7 39 69-114 42-82 (196)
66 PRK12290 thiE thiamine-phospha 61.5 38 0.00082 29.9 7.0 42 67-115 244-287 (437)
67 PLN02898 HMP-P kinase/thiamin- 58.7 44 0.00095 29.7 7.2 43 67-115 334-377 (502)
68 cd07182 RNaseH_typeII_bacteria 54.4 65 0.0014 24.6 6.6 93 20-126 41-133 (179)
69 COG1943 Transposase and inacti 52.8 17 0.00036 26.6 3.0 61 67-139 30-97 (136)
70 PF03709 OKR_DC_1_N: Orn/Lys/A 52.2 54 0.0012 22.9 5.5 64 19-83 52-115 (115)
71 PHA02542 41 41 helicase; Provi 49.7 85 0.0018 27.9 7.4 74 10-94 280-354 (473)
72 PRK15180 Vi polysaccharide bio 49.3 1.2E+02 0.0026 27.6 8.1 58 71-129 212-273 (831)
73 PRK13505 formate--tetrahydrofo 49.3 86 0.0019 28.6 7.4 29 16-46 356-385 (557)
74 PLN02733 phosphatidylcholine-s 48.2 41 0.00089 29.6 5.2 41 2-42 129-169 (440)
75 TIGR03356 BGL beta-galactosida 47.9 1.8E+02 0.0039 25.4 9.1 63 14-85 89-151 (427)
76 PRK09589 celA 6-phospho-beta-g 47.6 1.4E+02 0.0031 26.5 8.5 72 2-84 94-165 (476)
77 PRK13511 6-phospho-beta-galact 47.5 2E+02 0.0044 25.4 10.1 79 2-95 81-159 (469)
78 cd06542 GH18_EndoS-like Endo-b 46.7 94 0.002 24.6 6.8 63 17-91 49-111 (255)
79 cd00984 DnaB_C DnaB helicase C 45.6 79 0.0017 24.5 6.1 27 67-93 146-172 (242)
80 PF13481 AAA_25: AAA domain; P 44.4 56 0.0012 24.3 4.9 60 19-91 127-186 (193)
81 cd07583 nitrilase_5 Uncharacte 44.1 97 0.0021 24.2 6.5 63 13-88 13-78 (253)
82 PRK08760 replicative DNA helic 43.8 1.1E+02 0.0024 27.1 7.3 28 67-94 362-389 (476)
83 COG1377 FlhB Flagellar biosynt 43.8 48 0.001 28.5 4.8 88 32-130 260-351 (363)
84 cd02879 GH18_plant_chitinase_c 43.7 1.4E+02 0.003 24.5 7.5 64 19-91 51-115 (299)
85 PRK08506 replicative DNA helic 43.4 93 0.002 27.5 6.7 27 66-92 324-350 (472)
86 TIGR00676 fadh2 5,10-methylene 43.3 22 0.00047 29.0 2.6 23 105-127 249-271 (272)
87 PRK08006 replicative DNA helic 42.9 73 0.0016 28.2 6.0 27 67-93 359-385 (471)
88 cd07581 nitrilase_3 Uncharacte 42.7 88 0.0019 24.5 6.0 18 71-88 61-78 (255)
89 cd01020 TroA_b Metal binding p 42.6 90 0.0019 25.1 6.1 70 18-129 192-261 (264)
90 TIGR03772 anch_rpt_subst ancho 42.3 1.7E+02 0.0038 26.1 8.2 71 18-129 406-476 (479)
91 PRK13602 putative ribosomal pr 42.2 58 0.0012 21.6 4.1 47 20-92 15-61 (82)
92 cd07575 Xc-1258_like Xanthomon 41.7 72 0.0016 25.1 5.4 65 15-88 13-77 (252)
93 cd07197 nitrilase Nitrilase su 41.7 88 0.0019 24.2 5.8 19 70-88 62-80 (253)
94 PF08423 Rad51: Rad51; InterP 41.6 1.1E+02 0.0023 24.7 6.3 74 13-93 114-187 (256)
95 TIGR01552 phd_fam prevent-host 40.5 64 0.0014 18.9 3.8 26 12-40 2-27 (52)
96 cd06548 GH18_chitinase The GH1 40.3 1.5E+02 0.0032 24.6 7.2 67 15-91 66-132 (322)
97 PF07745 Glyco_hydro_53: Glyco 40.2 2.3E+02 0.005 24.0 11.5 120 11-130 146-283 (332)
98 PLN02540 methylenetetrahydrofo 40.0 1.1E+02 0.0024 27.9 6.7 25 105-129 261-285 (565)
99 PF07287 DUF1446: Protein of u 39.7 1.2E+02 0.0027 26.0 6.7 48 14-86 53-100 (362)
100 PF01261 AP_endonuc_2: Xylose 39.3 1.5E+02 0.0033 21.9 6.6 28 14-43 66-93 (213)
101 PF05872 DUF853: Bacterial pro 39.3 91 0.002 27.9 5.9 75 13-97 271-352 (502)
102 TIGR03600 phage_DnaB phage rep 39.2 1E+02 0.0022 26.5 6.3 27 67-93 327-353 (421)
103 KOG1615 Phosphoserine phosphat 38.9 62 0.0013 25.7 4.3 70 17-116 89-158 (227)
104 PRK05636 replicative DNA helic 38.7 82 0.0018 28.3 5.7 27 67-93 398-424 (505)
105 cd01125 repA Hexameric Replica 38.6 1.1E+02 0.0024 23.9 6.0 64 17-94 96-159 (239)
106 PLN02814 beta-glucosidase 38.5 2.1E+02 0.0045 25.7 8.2 71 2-84 104-174 (504)
107 TIGR03234 OH-pyruv-isom hydrox 38.4 1.6E+02 0.0034 23.1 6.9 27 14-42 79-105 (254)
108 PF10566 Glyco_hydro_97: Glyco 38.4 76 0.0016 26.2 5.0 92 19-114 73-182 (273)
109 PF02310 B12-binding: B12 bind 38.2 65 0.0014 22.0 4.1 28 17-44 64-91 (121)
110 cd07576 R-amidase_like Pseudom 38.2 1.2E+02 0.0027 23.6 6.2 18 71-88 62-79 (254)
111 PF02142 MGS: MGS-like domain 37.4 89 0.0019 20.8 4.6 44 23-88 51-94 (95)
112 PRK08840 replicative DNA helic 37.0 1.3E+02 0.0028 26.7 6.6 27 67-93 352-378 (464)
113 PF00464 SHMT: Serine hydroxym 36.8 68 0.0015 27.9 4.7 56 14-93 151-207 (399)
114 KOG0081 GTPase Rab27, small G 36.5 2E+02 0.0043 22.2 6.6 84 13-129 101-186 (219)
115 PLN02849 beta-glucosidase 36.3 2.5E+02 0.0055 25.2 8.4 71 2-84 106-176 (503)
116 cd07572 nit Nit1, Nit 2, and r 36.2 1.3E+02 0.0027 23.7 6.0 18 71-88 62-79 (265)
117 cd02067 B12-binding B12 bindin 36.0 63 0.0014 22.3 3.7 32 15-46 61-93 (119)
118 COG1167 ARO8 Transcriptional r 35.8 1E+02 0.0022 27.1 5.7 47 34-96 226-274 (459)
119 PRK06298 type III secretion sy 35.7 60 0.0013 27.8 4.2 87 32-129 254-344 (356)
120 KOG1405 4-aminobutyrate aminot 35.6 90 0.002 27.2 5.1 56 17-88 254-309 (484)
121 PRK13109 flhB flagellar biosyn 35.2 62 0.0013 27.7 4.2 87 32-128 262-351 (358)
122 PRK09165 replicative DNA helic 34.9 1.6E+02 0.0035 26.3 6.9 28 67-94 366-393 (497)
123 PRK09856 fructoselysine 3-epim 34.6 1.9E+02 0.0042 22.8 6.9 61 15-88 86-146 (275)
124 PRK12721 secretion system appa 34.2 62 0.0013 27.6 4.0 87 32-128 253-342 (349)
125 PRK09432 metF 5,10-methylenete 34.1 37 0.0008 28.2 2.6 24 105-128 268-291 (296)
126 cd07585 nitrilase_7 Uncharacte 34.1 1.1E+02 0.0025 24.0 5.4 67 13-89 13-80 (261)
127 cd07574 nitrilase_Rim1_like Un 34.1 1.8E+02 0.0038 23.2 6.6 72 13-88 15-89 (280)
128 PRK15014 6-phospho-beta-glucos 34.1 2.8E+02 0.0061 24.7 8.2 72 2-84 96-167 (477)
129 COG0112 GlyA Glycine/serine hy 33.9 78 0.0017 27.6 4.5 59 12-94 146-205 (413)
130 TIGR01404 FlhB_rel_III type II 33.8 62 0.0013 27.5 3.9 53 33-89 253-306 (342)
131 PF02604 PhdYeFM_antitox: Anti 33.5 57 0.0012 20.5 3.0 27 12-40 4-30 (75)
132 PRK12468 flhB flagellar biosyn 33.4 70 0.0015 27.7 4.3 88 32-129 260-350 (386)
133 PRK12772 bifunctional flagella 32.9 68 0.0015 29.5 4.3 86 32-128 516-605 (609)
134 cd02068 radical_SAM_B12_BD B12 32.5 66 0.0014 22.5 3.4 26 20-45 54-79 (127)
135 PRK09108 type III secretion sy 32.4 66 0.0014 27.5 3.9 89 32-129 255-344 (353)
136 PRK08185 hypothetical protein; 32.3 2.9E+02 0.0063 22.8 9.2 91 19-131 24-122 (283)
137 cd08778 Death_TNFRSF21 Death d 31.9 30 0.00066 22.5 1.4 55 75-129 5-71 (84)
138 PRK09593 arb 6-phospho-beta-gl 31.8 3.3E+02 0.0072 24.2 8.3 72 2-84 100-171 (478)
139 TIGR00665 DnaB replicative DNA 31.3 1.4E+02 0.003 25.8 5.8 26 67-92 328-353 (434)
140 PRK07773 replicative DNA helic 31.2 1.6E+02 0.0035 28.3 6.7 70 11-95 309-378 (886)
141 PRK08154 anaerobic benzoate ca 31.1 2.5E+02 0.0055 23.1 7.2 24 22-45 121-144 (309)
142 PRK06904 replicative DNA helic 30.7 1.7E+02 0.0037 25.9 6.4 27 67-93 357-383 (472)
143 PRK08156 type III secretion sy 30.6 75 0.0016 27.3 3.9 88 32-130 248-339 (361)
144 PLN02998 beta-glucosidase 30.3 3.3E+02 0.0072 24.4 8.1 71 2-84 109-179 (497)
145 PRK14729 miaA tRNA delta(2)-is 30.3 1.3E+02 0.0029 25.0 5.3 90 9-114 69-158 (300)
146 PRK05748 replicative DNA helic 30.1 1.8E+02 0.0039 25.4 6.4 28 67-94 338-365 (448)
147 PF01297 TroA: Periplasmic sol 29.8 1.3E+02 0.0029 23.7 5.1 47 17-92 184-230 (256)
148 PRK07004 replicative DNA helic 29.8 1.6E+02 0.0035 25.9 6.0 26 67-92 347-372 (460)
149 COG2845 Uncharacterized protei 29.6 2.1E+02 0.0045 24.5 6.2 76 7-88 151-230 (354)
150 COG0123 AcuC Deacetylases, inc 29.6 3.5E+02 0.0076 22.9 8.0 73 10-90 216-288 (340)
151 PRK00043 thiE thiamine-phospha 29.5 2.5E+02 0.0054 21.2 7.0 39 72-115 53-91 (212)
152 PRK13601 putative L7Ae-like ri 29.5 1.4E+02 0.003 19.8 4.4 46 21-92 13-58 (82)
153 PRK12773 flhB flagellar biosyn 28.7 63 0.0014 29.9 3.3 85 32-127 552-640 (646)
154 COG2115 XylA Xylose isomerase 28.7 2.3E+02 0.005 24.4 6.3 38 10-47 109-148 (438)
155 TIGR03162 ribazole_cobC alpha- 28.6 1.7E+02 0.0036 21.4 5.2 34 9-42 112-145 (177)
156 TIGR00328 flhB flagellar biosy 28.5 92 0.002 26.6 4.1 88 32-129 253-343 (347)
157 cd01137 PsaA Metal binding pro 27.8 3.3E+02 0.0072 22.1 7.7 70 18-129 212-284 (287)
158 PRK09989 hypothetical protein; 27.7 2.8E+02 0.006 21.8 6.7 28 14-43 80-107 (258)
159 COG1088 RfbB dTDP-D-glucose 4, 27.6 57 0.0012 27.6 2.6 146 23-173 15-186 (340)
160 PRK01018 50S ribosomal protein 27.3 1.6E+02 0.0034 20.1 4.5 45 20-90 20-64 (99)
161 cd00544 CobU Adenosylcobinamid 27.1 2.2E+02 0.0049 21.3 5.7 24 16-41 100-123 (169)
162 cd03770 SR_TndX_transposase Se 27.0 2E+02 0.0043 20.6 5.2 22 71-92 86-107 (140)
163 PRK06683 hypothetical protein; 26.9 1.7E+02 0.0036 19.4 4.4 21 72-92 41-61 (82)
164 cd04795 SIS SIS domain. SIS (S 26.8 40 0.00087 21.4 1.4 23 17-41 59-81 (87)
165 PRK09997 hydroxypyruvate isome 26.6 3.2E+02 0.0069 21.5 6.8 26 14-41 80-105 (258)
166 PF04748 Polysacc_deac_2: Dive 26.6 2.6E+02 0.0056 21.9 6.1 58 12-94 155-212 (213)
167 PRK05595 replicative DNA helic 26.5 1.5E+02 0.0033 25.8 5.3 26 67-92 334-359 (444)
168 cd00610 OAT_like Acetyl ornith 26.5 2.5E+02 0.0054 23.5 6.5 57 16-88 173-229 (413)
169 PRK06321 replicative DNA helic 26.5 2.2E+02 0.0049 25.2 6.3 26 67-92 362-387 (472)
170 PF09547 Spore_IV_A: Stage IV 26.4 4.6E+02 0.0099 23.5 8.0 61 7-91 155-216 (492)
171 PRK13015 3-dehydroquinate dehy 26.4 1.7E+02 0.0036 21.9 4.7 89 35-131 2-93 (146)
172 TIGR00789 flhB_rel flhB C-term 26.3 78 0.0017 21.1 2.7 50 71-126 27-77 (82)
173 PF02283 CobU: Cobinamide kina 26.1 2.4E+02 0.0052 21.1 5.7 27 14-42 96-122 (167)
174 TIGR00695 uxuA mannonate dehyd 26.0 3.6E+02 0.0077 23.6 7.3 58 20-89 44-101 (394)
175 PRK05800 cobU adenosylcobinami 26.0 2.3E+02 0.0049 21.2 5.6 26 15-42 99-124 (170)
176 cd01422 MGS Methylglyoxal synt 25.9 1.8E+02 0.0038 20.4 4.6 46 22-88 60-105 (115)
177 cd07584 nitrilase_6 Uncharacte 25.8 1.6E+02 0.0034 23.1 4.9 18 71-88 65-82 (258)
178 PRK15004 alpha-ribazole phosph 25.6 1.7E+02 0.0037 22.1 4.9 34 10-43 117-150 (199)
179 cd04733 OYE_like_2_FMN Old yel 25.3 2.5E+02 0.0055 23.4 6.2 80 11-93 74-171 (338)
180 cd00598 GH18_chitinase-like Th 25.3 2.9E+02 0.0064 20.6 6.8 62 20-91 50-111 (210)
181 PRK13507 formate--tetrahydrofo 25.2 2.7E+02 0.0059 25.5 6.6 71 18-128 387-458 (587)
182 PRK06524 biotin carboxylase-li 25.2 1.4E+02 0.0029 26.9 4.7 30 15-46 13-42 (493)
183 PLN02607 1-aminocyclopropane-1 24.9 2.6E+02 0.0056 24.4 6.4 23 21-43 187-209 (447)
184 PF03786 UxuA: D-mannonate deh 24.9 2.8E+02 0.0061 23.8 6.4 61 18-90 44-104 (351)
185 PRK05339 PEP synthetase regula 24.7 4E+02 0.0086 21.9 9.7 107 19-128 16-131 (269)
186 cd07578 nitrilase_1_R1 First n 24.4 2.8E+02 0.0061 21.8 6.1 17 72-88 66-82 (258)
187 PRK05702 flhB flagellar biosyn 24.0 1.2E+02 0.0027 25.9 4.1 90 32-128 260-349 (359)
188 PF00205 TPP_enzyme_M: Thiamin 23.9 1.5E+02 0.0032 20.9 4.0 21 72-92 27-47 (137)
189 cd00537 MTHFR Methylenetetrahy 23.8 53 0.0011 26.5 1.8 21 105-125 252-272 (274)
190 PF00232 Glyco_hydro_1: Glycos 23.3 4.3E+02 0.0093 23.1 7.5 64 12-84 92-155 (455)
191 cd01122 GP4d_helicase GP4d_hel 23.3 2.1E+02 0.0046 22.6 5.2 23 69-91 166-188 (271)
192 PRK13209 L-xylulose 5-phosphat 23.0 3.9E+02 0.0084 21.2 6.9 26 15-42 95-120 (283)
193 PF06057 VirJ: Bacterial virul 22.9 1.3E+02 0.0029 23.5 3.7 33 10-42 43-75 (192)
194 PF00202 Aminotran_3: Aminotra 22.4 1.8E+02 0.0039 24.2 4.8 25 71-95 198-224 (339)
195 TIGR01088 aroQ 3-dehydroquinat 22.3 2E+02 0.0043 21.3 4.4 65 67-131 24-91 (141)
196 cd01393 recA_like RecA is a b 22.2 3.6E+02 0.0077 20.5 7.6 23 69-91 144-166 (226)
197 cd07573 CPA N-carbamoylputresc 22.2 2.2E+02 0.0047 22.7 5.1 18 71-88 66-83 (284)
198 smart00851 MGS MGS-like domain 22.2 1.5E+02 0.0032 19.5 3.5 44 23-88 46-89 (90)
199 PF14202 TnpW: Transposon-enco 22.0 29 0.00062 19.6 -0.1 23 107-129 14-36 (37)
200 PRK13463 phosphatase PhoE; Pro 22.0 2E+02 0.0043 22.0 4.6 34 10-43 119-152 (203)
201 cd02875 GH18_chitobiase Chitob 21.9 3.1E+02 0.0067 23.2 6.2 52 22-90 67-118 (358)
202 COG0191 Fba Fructose/tagatose 21.7 4.8E+02 0.01 21.7 9.4 92 20-131 30-129 (286)
203 PRK02551 flavoprotein NrdI; Pr 21.5 99 0.0022 23.2 2.7 29 67-95 106-134 (154)
204 PRK15421 DNA-binding transcrip 21.4 2.7E+02 0.0058 22.7 5.6 46 70-129 31-78 (317)
205 PRK07714 hypothetical protein; 21.4 2.6E+02 0.0057 18.9 4.7 21 72-92 48-68 (100)
206 cd01123 Rad51_DMC1_radA Rad51_ 21.3 3.5E+02 0.0077 20.7 6.0 70 16-91 98-167 (235)
207 cd01017 AdcA Metal binding pro 21.1 2.6E+02 0.0057 22.5 5.4 24 18-43 206-229 (282)
208 cd04734 OYE_like_3_FMN Old yel 21.1 5E+02 0.011 21.8 11.1 118 10-130 68-204 (343)
209 COG0613 Predicted metal-depend 21.1 2.3E+02 0.005 22.9 5.0 78 4-113 9-86 (258)
210 PF00150 Cellulase: Cellulase 20.9 4.1E+02 0.0088 20.6 9.5 101 13-131 56-163 (281)
211 PRK09517 multifunctional thiam 20.8 3.9E+02 0.0085 25.2 7.1 40 68-114 47-87 (755)
212 cd06545 GH18_3CO4_chitinase Th 20.6 4.3E+02 0.0093 20.8 7.0 86 19-130 46-131 (253)
213 PF02450 LCAT: Lecithin:choles 20.6 1.4E+02 0.003 25.6 3.8 28 14-42 99-126 (389)
214 cd02070 corrinoid_protein_B12- 20.6 1.6E+02 0.0034 22.7 3.8 30 15-44 144-175 (201)
215 TIGR00713 hemL glutamate-1-sem 20.6 2.5E+02 0.0054 23.9 5.4 24 71-94 216-241 (423)
216 PF02065 Melibiase: Melibiase; 20.3 3.2E+02 0.0069 23.7 6.0 120 9-139 94-231 (394)
217 cd00419 Ferrochelatase_C Ferro 20.2 3.4E+02 0.0074 19.5 6.7 22 63-84 103-124 (135)
218 KOG1496 Malate dehydrogenase [ 20.0 2.4E+02 0.0051 23.4 4.7 77 33-115 122-202 (332)
No 1
>KOG3035 consensus Isoamyl acetate-hydrolyzing esterase [Lipid transport and metabolism]
Probab=99.93 E-value=9e-26 Score=174.99 Aligned_cols=145 Identities=47% Similarity=0.794 Sum_probs=127.9
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHH
Q 030618 1 MLPHSTGLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLC 80 (174)
Q Consensus 1 ~~~~~~~~~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA 80 (174)
++||.+..++++|+++|.+|+++|+..++...+..+||+++|||+++..+.+.....-.....|.|+.+..|++++.++|
T Consensus 82 ~l~~~~~~~~hvPl~Ey~dNlr~iv~~lks~~~~~riIlitPpp~de~~~~~~~~e~~~~~~~RtNe~~~~Ya~ac~~la 161 (245)
T KOG3035|consen 82 CLPEPSSLGQHVPLEEYKDNLRKIVSHLKSLSPETRIILITPPPVDEEAWEKQEQEPYVLGPERTNETVGTYAKACANLA 161 (245)
T ss_pred cCCCCCCCCCccCHHHHHHHHHHHHHHhhccCCcceEEEecCCCcCHHHHHHHhccchhccchhhhhHHHHHHHHHHHHH
Confidence 58999999999999999999999999999987889999999999998865432222212345589999999999999999
Q ss_pred HHcCCeEEechHHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCc
Q 030618 81 QEMDVKAIDLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLREADWEPSLHWRSLPTEFDE 147 (174)
Q Consensus 81 ~~~~v~~iDl~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~~~~p~l~~~~~~~~~~~ 147 (174)
++.|+.++|+++.|++..+|...+++||+|+|++||.++.+.|.+.|+++. |..++++||-+|+-
T Consensus 162 ~e~~l~~vdlws~~Q~~~dw~~~~ltDGLHlS~~G~~ivf~Ei~kvl~ea~--~~~~~k~lp~~fp~ 226 (245)
T KOG3035|consen 162 QEIGLYVVDLWSKMQESDDWQTSCLTDGLHLSPKGNKIVFDEILKVLKEAW--PSPSPKNLPLEFPH 226 (245)
T ss_pred HHhCCeeeeHHhhhhhcccHHHHHhccceeeccccchhhHHHHHHHHHhcc--CCCCcccCCccCCc
Confidence 999999999999999999999899999999999999999999999999974 66666999988865
No 2
>cd01838 Isoamyl_acetate_hydrolase_like Isoamyl-acetate hydrolyzing esterase-like proteins. SGNH_hydrolase subfamily similar to the Saccharomyces cerevisiae IAH1. IAH1 may be the major esterase that hydrolyses isoamyl acetate in sake mash. The SGNH-family of hydrolases is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases
Probab=99.81 E-value=6.4e-19 Score=135.24 Aligned_cols=115 Identities=48% Similarity=0.832 Sum_probs=95.0
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEech
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLW 91 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~ 91 (174)
.+++.|.++++.||+.+++.+++++||+++|+|+........ .........+.++.++.|+++++++|+++++.|+|++
T Consensus 85 ~~~~~~~~~~~~~i~~~~~~~~~~~ii~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~iD~~ 163 (199)
T cd01838 85 VPLDEYKENLRKIVSHLKSLSPKTKVILITPPPVDEEAWEKS-LEDGGSQPGRTNELLKQYAEACVEVAEELGVPVIDLW 163 (199)
T ss_pred ccHHHHHHHHHHHHHHHHhhCCCCeEEEeCCCCCCHHHHhhh-hccccCCccccHHHHHHHHHHHHHHHHHhCCcEEEHH
Confidence 679999999999999999987899999999999876543210 0000112356788899999999999999999999999
Q ss_pred HHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHH
Q 030618 92 TAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
+.+....++...+..||+|||++||++||+.|++.|
T Consensus 164 ~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~l~~~~ 199 (199)
T cd01838 164 TAMQEEAGWLESLLTDGLHFSSKGYELLFEEIVKVI 199 (199)
T ss_pred HHHHhccCchhhhcCCCCCcCHhHHHHHHHHHHhhC
Confidence 999876555567889999999999999999998764
No 3
>cd01841 NnaC_like NnaC (CMP-NeuNAc synthetase) _like subfamily of SGNH_hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases. E. coli NnaC appears to be involved in polysaccharide synthesis.
Probab=99.78 E-value=3.3e-18 Score=129.67 Aligned_cols=108 Identities=22% Similarity=0.321 Sum_probs=90.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEe
Q 030618 10 PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAID 89 (174)
Q Consensus 10 ~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iD 89 (174)
.+.++++|.+++++|++.+++..++++||++++||+..... .....++.+.+|+++++++|+++++.|||
T Consensus 66 ~~~~~~~~~~~~~~l~~~~~~~~p~~~vi~~~~~p~~~~~~----------~~~~~~~~~~~~n~~l~~~a~~~~~~~id 135 (174)
T cd01841 66 KEVSSNQFIKWYRDIIEQIREEFPNTKIYLLSVLPVLEEDE----------IKTRSNTRIQRLNDAIKELAPELGVTFID 135 (174)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEeeCCcCcccc----------cccCCHHHHHHHHHHHHHHHHHCCCEEEE
Confidence 44689999999999999999987899999999888754321 11345778899999999999999999999
Q ss_pred chHHHhhcCC-cccccccCCCCCChHHHHHHHHHHHHHH
Q 030618 90 LWTAMQQRDD-WLTTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 90 l~~~~~~~~~-~~~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
+++.+....+ ....+..||+|||++||++||+.|.++|
T Consensus 136 ~~~~~~~~~~~~~~~~~~DglH~n~~Gy~~~a~~l~~~~ 174 (174)
T cd01841 136 LNDVLVDEFGNLKKEYTTDGLHFNPKGYQKLLEILEEYL 174 (174)
T ss_pred cHHHHcCCCCCccccccCCCcccCHHHHHHHHHHHHhhC
Confidence 9998875432 2336789999999999999999998764
No 4
>cd01828 sialate_O-acetylesterase_like2 sialate_O-acetylesterase_like subfamily of the SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.75 E-value=2.5e-17 Score=124.38 Aligned_cols=105 Identities=20% Similarity=0.323 Sum_probs=90.0
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEe
Q 030618 10 PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAID 89 (174)
Q Consensus 10 ~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iD 89 (174)
.+.++++|.++++++|+.+++.+++++||+++++|..... ...+..+.+|+++++++|++.++.|+|
T Consensus 63 ~~~~~~~~~~~l~~li~~~~~~~~~~~vi~~~~~p~~~~~-------------~~~~~~~~~~n~~l~~~a~~~~~~~id 129 (169)
T cd01828 63 QGTSDEDIVANYRTILEKLRKHFPNIKIVVQSILPVGELK-------------SIPNEQIEELNRQLAQLAQQEGVTFLD 129 (169)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcCccC-------------cCCHHHHHHHHHHHHHHHHHCCCEEEe
Confidence 5578999999999999999998889999999998865211 235677889999999999999999999
Q ss_pred chHHHhhcCC-cccccccCCCCCChHHHHHHHHHHHHHH
Q 030618 90 LWTAMQQRDD-WLTTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 90 l~~~~~~~~~-~~~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
+++.+....+ ....+..||+|||++||++||+.|.++|
T Consensus 130 ~~~~~~~~~~~~~~~~~~DgiHpn~~G~~~~a~~i~~~~ 168 (169)
T cd01828 130 LWAVFTNADGDLKNEFTTDGLHLNAKGYAVWAAALQPYL 168 (169)
T ss_pred chhhhcCCCCCcchhhccCccccCHHHHHHHHHHHHHhh
Confidence 9998876543 3456889999999999999999999886
No 5
>cd04501 SGNH_hydrolase_like_4 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.73 E-value=3.1e-17 Score=125.25 Aligned_cols=108 Identities=17% Similarity=0.264 Sum_probs=89.3
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEe
Q 030618 10 PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAID 89 (174)
Q Consensus 10 ~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iD 89 (174)
...++++|.+++++||+.+++ +++++|+++++|........ .....+..+.+|+++++++|++.++.++|
T Consensus 74 ~~~~~~~~~~~~~~li~~~~~--~~~~~il~~~~p~~~~~~~~--------~~~~~~~~~~~~n~~~~~~a~~~~v~~vd 143 (183)
T cd04501 74 VNTSLEMIKDNIRSMVELAEA--NGIKVILASPLPVDDYPWKP--------QWLRPANKLKSLNRWLKDYARENGLLFLD 143 (183)
T ss_pred cCCCHHHHHHHHHHHHHHHHH--CCCcEEEEeCCCcCccccch--------hhcchHHHHHHHHHHHHHHHHHcCCCEEe
Confidence 346899999999999999999 67999999999986543211 11345778899999999999999999999
Q ss_pred chHHHhhcCC--cccccccCCCCCChHHHHHHHHHHHHHH
Q 030618 90 LWTAMQQRDD--WLTTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 90 l~~~~~~~~~--~~~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
+++.+.+..+ ....+..||+|||++||++|++.+.+.|
T Consensus 144 ~~~~~~~~~~~~~~~~~~~DgvHp~~~Gy~~~a~~i~~~~ 183 (183)
T cd04501 144 FYSPLLDERNVGLKPGLLTDGLHPSREGYRVMAPLAEKAL 183 (183)
T ss_pred chhhhhccccccccccccCCCCCCCHHHHHHHHHHHHHhC
Confidence 9999887542 3456789999999999999999998764
No 6
>cd01839 SGNH_arylesterase_like SGNH_hydrolase subfamily, similar to arylesterase (7-aminocephalosporanic acid-deacetylating enzyme) of A. tumefaciens. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.73 E-value=4e-17 Score=127.39 Aligned_cols=112 Identities=14% Similarity=0.242 Sum_probs=90.0
Q ss_pred CCCCCC---CCChHHHHHHHHHHHHHHHhhC-----CCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHH
Q 030618 5 STGLGP---HVPLPEYIENMRKIALHLKSLS-----AKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEAC 76 (174)
Q Consensus 5 ~~~~~~---~v~l~~y~~nl~~iI~~ir~~~-----~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i 76 (174)
|+|... ..++++|.+|+++||+.+++.. ++++||+++||++....... ...+.+.+..+.+|++++
T Consensus 88 GtND~~~~~~~~~~~~~~~l~~lv~~i~~~~~~~~~~~~~iil~~pp~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 161 (208)
T cd01839 88 GTNDLKSYFNLSAAEIAQGLGALVDIIRTAPIEPGMPAPKILIVAPPPIRTPKGSL------AGKFAGAEEKSKGLADAY 161 (208)
T ss_pred cccccccccCCCHHHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCccCccccch------hhhhccHHHHHHHHHHHH
Confidence 555432 3589999999999999999965 68999999999873221110 012345678889999999
Q ss_pred HHHHHHcCCeEEechHHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 77 LKLCQEMDVKAIDLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 77 ~~lA~~~~v~~iDl~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
+++|+++++.|+|++..+.. +..||||||++||++||+.|++.|++
T Consensus 162 ~~~a~~~~~~~iD~~~~~~~-------~~~DGvH~~~~G~~~~a~~l~~~i~~ 207 (208)
T cd01839 162 RALAEELGCHFFDAGSVGST-------SPVDGVHLDADQHAALGQALASVIRA 207 (208)
T ss_pred HHHHHHhCCCEEcHHHHhcc-------CCCCccCcCHHHHHHHHHHHHHHHhh
Confidence 99999999999999886642 56899999999999999999999876
No 7
>cd01827 sialate_O-acetylesterase_like1 sialate O-acetylesterase_like family of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.72 E-value=8.2e-17 Score=123.31 Aligned_cols=102 Identities=17% Similarity=0.201 Sum_probs=84.4
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEech
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLW 91 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~ 91 (174)
.+.+.|.+++++||+.+++..++++||+++|+|....... ....+...+.|+++++++|+++++.+||++
T Consensus 86 ~~~~~~~~~l~~li~~i~~~~~~~~iil~t~~p~~~~~~~----------~~~~~~~~~~~~~~~~~~a~~~~~~~vD~~ 155 (188)
T cd01827 86 KYKDDFKKDYETMIDSFQALPSKPKIYICYPIPAYYGDGG----------FINDNIIKKEIQPMIDKIAKKLNLKLIDLH 155 (188)
T ss_pred ccHHHHHHHHHHHHHHHHHHCCCCeEEEEeCCcccccCCC----------ccchHHHHHHHHHHHHHHHHHcCCcEEEcc
Confidence 3578999999999999999878899999999886532210 123456677899999999999999999999
Q ss_pred HHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHH
Q 030618 92 TAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
+.+.... .+..||+|||++||++||+.|+++|
T Consensus 156 ~~~~~~~----~~~~Dg~Hpn~~G~~~~A~~i~~~i 187 (188)
T cd01827 156 TPLKGKP----ELVPDWVHPNEKGAYILAKVVYKAI 187 (188)
T ss_pred ccccCCc----cccCCCCCcCHHHHHHHHHHHHHHh
Confidence 8876533 4678999999999999999999887
No 8
>cd01821 Rhamnogalacturan_acetylesterase_like Rhamnogalacturan_acetylesterase_like subgroup of SGNH-hydrolases. Rhamnogalacturan acetylesterase removes acetyl esters from rhamnogalacturonan substrates, and renders them susceptible to degradation by rhamnogalacturonases. Rhamnogalacturonans are highly branched regions in pectic polysaccharides, consisting of repeating -(1,2)-L-Rha-(1,4)-D-GalUA disaccharide units, with many rhamnose residues substituted by neutral oligosaccharides such as arabinans, galactans and arabinogalactans. Extracellular enzymes participating in the degradation of plant cell wall polymers, such as Rhamnogalacturonan acetylesterase, would typically be found in saprophytic and plant pathogenic fungi and bacteria.
Probab=99.71 E-value=4.6e-17 Score=126.14 Aligned_cols=104 Identities=22% Similarity=0.274 Sum_probs=83.0
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEec
Q 030618 11 HVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDL 90 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl 90 (174)
.+++++|.+|+++||+.+++ .++++||++|+|..... . ....+..+.+|+++++++|+++|++|+|+
T Consensus 86 ~~~~~~~~~nl~~ii~~~~~--~~~~~il~tp~~~~~~~--~---------~~~~~~~~~~~~~~~~~~a~~~~~~~vD~ 152 (198)
T cd01821 86 TEPYTTYKEYLRRYIAEARA--KGATPILVTPVTRRTFD--E---------GGKVEDTLGDYPAAMRELAAEEGVPLIDL 152 (198)
T ss_pred CCcHHHHHHHHHHHHHHHHH--CCCeEEEECCccccccC--C---------CCcccccchhHHHHHHHHHHHhCCCEEec
Confidence 35899999999999999999 67999999998753211 0 01245567889999999999999999999
Q ss_pred hHHHhhc----C--Cc-c--cccccCCCCCChHHHHHHHHHHHHHH
Q 030618 91 WTAMQQR----D--DW-L--TTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 91 ~~~~~~~----~--~~-~--~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
++.+... + +. . ..+..||+|||++||++||+.|++.|
T Consensus 153 ~~~~~~~~~~~g~~~~~~~~~~~~~DgvHp~~~G~~~~a~~i~~~~ 198 (198)
T cd01821 153 NAASRALYEAIGPEKSKKYFPEGPGDNTHFSEKGADVVARLVAEEL 198 (198)
T ss_pred HHHHHHHHHHhChHhHHhhCcCCCCCCCCCCHHHHHHHHHHHHhhC
Confidence 9987542 1 11 1 25789999999999999999998764
No 9
>cd04502 SGNH_hydrolase_like_7 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.71 E-value=1.4e-16 Score=120.69 Aligned_cols=109 Identities=17% Similarity=0.206 Sum_probs=87.1
Q ss_pred CCCC-CCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHH-
Q 030618 5 STGL-GPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQE- 82 (174)
Q Consensus 5 ~~~~-~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~- 82 (174)
|+|. ..+.++++|.+++++||+.+++.+++++||+++++|..... ..+..+.++++.++++|++
T Consensus 59 G~ND~~~~~~~~~~~~~~~~lv~~i~~~~~~~~iil~~~~p~~~~~--------------~~~~~~~~~n~~~~~~a~~~ 124 (171)
T cd04502 59 GDNDLASGRTPEEVLRDFRELVNRIRAKLPDTPIAIISIKPSPARW--------------ALRPKIRRFNALLKELAETR 124 (171)
T ss_pred ecCcccCCCCHHHHHHHHHHHHHHHHHHCCCCcEEEEEecCCCcch--------------hhHHHHHHHHHHHHHHHhcC
Confidence 4444 46678999999999999999998888999999987643211 1235577899999999985
Q ss_pred cCCeEEechHHHhhcCC-c-ccccccCCCCCChHHHHHHHHHHHHHH
Q 030618 83 MDVKAIDLWTAMQQRDD-W-LTTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 83 ~~v~~iDl~~~~~~~~~-~-~~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
.++.|+|+++.+....+ . .+.+..||+|||++||++|++.+.+.|
T Consensus 125 ~~v~~vD~~~~~~~~~~~~~~~~~~~DGlH~n~~Gy~~~a~~l~~~~ 171 (171)
T cd04502 125 PNLTYIDVASPMLDADGKPRAELFQEDGLHLNDAGYALWRKVIKPAL 171 (171)
T ss_pred CCeEEEECcHHHhCCCCCcChhhcCCCCCCCCHHHHHHHHHHHHhhC
Confidence 59999999998876542 2 245679999999999999999998764
No 10
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.70 E-value=2e-16 Score=120.84 Aligned_cols=110 Identities=18% Similarity=0.260 Sum_probs=88.8
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEech
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLW 91 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~ 91 (174)
.+++.|.++++.||+.+++.+++++|++++|++....... .....+..+..|+++++++|+++++.|+|++
T Consensus 74 ~~~~~~~~~~~~li~~i~~~~~~~~iv~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~a~~~~v~~vd~~ 144 (189)
T cd01825 74 LNASEYRQQLREFIKRLRQILPNASILLVGPPDSLQKTGA---------GRWRTPPGLDAVIAAQRRVAKEEGIAFWDLY 144 (189)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCeEEEEcCCchhccCCC---------CCcccCCcHHHHHHHHHHHHHHcCCeEEeHH
Confidence 6799999999999999999888999999999875432100 0122345678899999999999999999999
Q ss_pred HHHhhcCC---c--ccccccCCCCCChHHHHHHHHHHHHHHHhc
Q 030618 92 TAMQQRDD---W--LTTCFMDGIHFSSEGSKIVVKEILKVLREA 130 (174)
Q Consensus 92 ~~~~~~~~---~--~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~ 130 (174)
+.+....+ + ...+..||+|||++||++||+.+.+.|+++
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~Dg~Hp~~~G~~~~a~~i~~~i~~~ 188 (189)
T cd01825 145 AAMGGEGGIWQWAEPGLARKDYVHLTPRGYERLANLLYEALLKA 188 (189)
T ss_pred HHhCCcchhhHhhcccccCCCcccCCcchHHHHHHHHHHHHHhh
Confidence 98865321 1 234678999999999999999999999874
No 11
>cd01834 SGNH_hydrolase_like_2 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.68 E-value=2.1e-16 Score=120.49 Aligned_cols=108 Identities=22% Similarity=0.292 Sum_probs=86.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEec
Q 030618 11 HVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDL 90 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl 90 (174)
..++++|.++++.||+.+++..++++||+++|++........ ......+..+..|+++++++|+++++.+||+
T Consensus 81 ~~~~~~~~~~l~~~v~~~~~~~~~~~ii~~~p~~~~~~~~~~-------~~~~~~~~~~~~~n~~l~~~a~~~~~~~iD~ 153 (191)
T cd01834 81 PVGLEKFKTNLRRLIDRLKNKESAPRIVLVSPIAYEANEDPL-------PDGAEYNANLAAYADAVRELAAENGVAFVDL 153 (191)
T ss_pred cccHHHHHHHHHHHHHHHHcccCCCcEEEECCcccCCCCCCC-------CChHHHHHHHHHHHHHHHHHHHHcCCeEEec
Confidence 368999999999999999855588999999998764321100 0113456778899999999999999999999
Q ss_pred hHHHhhcCCc--ccccccCCCCCChHHHHHHHHHHHH
Q 030618 91 WTAMQQRDDW--LTTCFMDGIHFSSEGSKIVVKEILK 125 (174)
Q Consensus 91 ~~~~~~~~~~--~~~~~~DGvHpn~~Gy~~~a~~l~~ 125 (174)
++.+.+..+. ...+..||+|||++||++||+.+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~D~~Hpn~~G~~~~a~~~~~ 190 (191)
T cd01834 154 FTPMKEAFQKAGEAVLTVDGVHPNEAGHRALARLWLE 190 (191)
T ss_pred HHHHHHHHHhCCCccccCCCCCCCHHHHHHHHHHHHh
Confidence 9999765321 3467899999999999999999976
No 12
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.68 E-value=4.9e-16 Score=119.41 Aligned_cols=108 Identities=13% Similarity=0.209 Sum_probs=86.8
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc-CCeEE
Q 030618 10 PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM-DVKAI 88 (174)
Q Consensus 10 ~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~-~v~~i 88 (174)
...+.++|.+++++||+.+++.+++++|+++++|++......... .....++.++.||+.++++|+++ ++.|+
T Consensus 82 ~~~~~~~~~~~l~~li~~i~~~~~~~~iiv~~~p~~~~~~~~~~~------~~~~~~~~~~~~n~~~~~~a~~~~~~~~i 155 (191)
T cd01836 82 HLTSIARWRKQLAELVDALRAKFPGARVVVTAVPPLGRFPALPQP------LRWLLGRRARLLNRALERLASEAPRVTLL 155 (191)
T ss_pred CCCCHHHHHHHHHHHHHHHHhhCCCCEEEEECCCCcccCCCCcHH------HHHHHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence 457899999999999999999888999999998887532100000 00123566789999999999999 99999
Q ss_pred echHHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHHH
Q 030618 89 DLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLR 128 (174)
Q Consensus 89 Dl~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~ 128 (174)
|++..+. ...+..||+|||++||+.|++.+.+.|+
T Consensus 156 d~~~~~~-----~~~~~~DglHpn~~Gy~~~a~~l~~~i~ 190 (191)
T cd01836 156 PATGPLF-----PALFASDGFHPSAAGYAVWAEALAPAIA 190 (191)
T ss_pred ecCCccc-----hhhccCCCCCCChHHHHHHHHHHHHHHh
Confidence 9998764 2357789999999999999999999886
No 13
>cd01820 PAF_acetylesterase_like PAF_acetylhydrolase (PAF-AH)_like subfamily of SGNH-hydrolases. Platelet-activating factor (PAF) and PAF-AH are key players in inflammation and in atherosclerosis. PAF-AH is a calcium independent phospholipase A2 which exhibits strong substrate specificity towards PAF, hydrolyzing an acetyl ester at the sn-2 position. PAF-AH also degrades a family of oxidized PAF-like phospholipids with short sn-2 residues. In addition, PAF and PAF-AH are associated with neural migration and mammalian reproduction.
Probab=99.66 E-value=1e-15 Score=120.27 Aligned_cols=112 Identities=14% Similarity=0.137 Sum_probs=88.5
Q ss_pred CCCCC-CCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc
Q 030618 5 STGLG-PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM 83 (174)
Q Consensus 5 ~~~~~-~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~ 83 (174)
|+|.. ...+.++|.+++++||+.+++.+|+++||+++++|..... ......+.++|+.+++.|.+.
T Consensus 98 G~ND~~~~~~~~~~~~~l~~ii~~l~~~~P~~~Iil~~~~p~~~~~-------------~~~~~~~~~~n~~l~~~~~~~ 164 (214)
T cd01820 98 GTNNIGHTTTAEEIAEGILAIVEEIREKLPNAKILLLGLLPRGQNP-------------NPLRERNAQVNRLLAVRYDGL 164 (214)
T ss_pred cccccCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEeccCCCCCc-------------hhHHHHHHHHHHHHHHHhcCC
Confidence 44443 3348999999999999999998889999999988765321 113455678999998887654
Q ss_pred -CCeEEechHHHhhcC-CcccccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 84 -DVKAIDLWTAMQQRD-DWLTTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 84 -~v~~iDl~~~~~~~~-~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
++.|||+++.+.... .....++.||+|||++||++|++.|.+.|++
T Consensus 165 ~~v~~vd~~~~~~~~~g~~~~~~~~DGlHpn~~Gy~~~a~~l~~~l~~ 212 (214)
T cd01820 165 PNVTFLDIDKGFVQSDGTISHHDMPDYLHLTAAGYRKWADALHPTLAR 212 (214)
T ss_pred CCEEEEeCchhhcccCCCcCHhhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 999999999886543 2334567899999999999999999999986
No 14
>cd01832 SGNH_hydrolase_like_1 Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. Myxobacterial members of this subfamily have been reported to be involved in adventurous gliding motility.
Probab=99.66 E-value=8.3e-16 Score=117.30 Aligned_cols=100 Identities=15% Similarity=0.208 Sum_probs=81.3
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCC-ChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEe
Q 030618 11 HVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPI-NKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAID 89 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~-~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iD 89 (174)
..++++|.++++.||+.++. ++++|||+++++. ...... ...+..+.+|+++++++|+++++.++|
T Consensus 84 ~~~~~~~~~~~~~~i~~i~~--~~~~vil~~~~~~~~~~~~~-----------~~~~~~~~~~n~~l~~~a~~~~v~~vd 150 (185)
T cd01832 84 GTDPDTYRADLEEAVRRLRA--AGARVVVFTIPDPAVLEPFR-----------RRVRARLAAYNAVIRAVAARYGAVHVD 150 (185)
T ss_pred CCCHHHHHHHHHHHHHHHHh--CCCEEEEecCCCccccchhH-----------HHHHHHHHHHHHHHHHHHHHcCCEEEe
Confidence 58899999999999999996 8899999999887 222111 123456789999999999999999999
Q ss_pred chHHHhhcCCcccccccCCCCCChHHHHHHHHHHHH
Q 030618 90 LWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILK 125 (174)
Q Consensus 90 l~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~ 125 (174)
++..+... ....+..||+|||++||++||+.|++
T Consensus 151 ~~~~~~~~--~~~~~~~DgiHpn~~G~~~~A~~i~~ 184 (185)
T cd01832 151 LWEHPEFA--DPRLWASDRLHPSAAGHARLAALVLA 184 (185)
T ss_pred cccCcccC--CccccccCCCCCChhHHHHHHHHHhh
Confidence 99876421 12356789999999999999999875
No 15
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.65 E-value=1.4e-15 Score=117.52 Aligned_cols=99 Identities=14% Similarity=0.297 Sum_probs=82.8
Q ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHH
Q 030618 14 LPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTA 93 (174)
Q Consensus 14 l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~ 93 (174)
.+.|.++++.+++.+++ ++++||++++||+.... .+..+..++++++++|+++++.|+|+++.
T Consensus 90 ~~~~~~~l~~lv~~~~~--~~~~vili~~pp~~~~~---------------~~~~~~~~~~~~~~~a~~~~~~~id~~~~ 152 (200)
T cd01829 90 EEEYRQRIDELLNVARA--KGVPVIWVGLPAMRSPK---------------LSADMVYLNSLYREEVAKAGGEFVDVWDG 152 (200)
T ss_pred HHHHHHHHHHHHHHHHh--CCCcEEEEcCCCCCChh---------------HhHHHHHHHHHHHHHHHHcCCEEEEhhHh
Confidence 57999999999999998 78999999998875321 34567789999999999999999999999
Q ss_pred HhhcCCcc------------cccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 94 MQQRDDWL------------TTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 94 ~~~~~~~~------------~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
|....+.. ..+..||+|||++||++|++.+++.|++
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~DgvH~~~~G~~~~a~~i~~~l~~ 200 (200)
T cd01829 153 FVDENGRFTYSGTDVNGKKVRLRTNDGIHFTAAGGRKLAFYVEKLIRR 200 (200)
T ss_pred hcCCCCCeeeeccCCCCcEEEeecCCCceECHHHHHHHHHHHHHHhhC
Confidence 97654321 2346799999999999999999998863
No 16
>cd01835 SGNH_hydrolase_like_3 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.65 E-value=8.3e-16 Score=118.42 Aligned_cols=100 Identities=16% Similarity=0.326 Sum_probs=81.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEec
Q 030618 11 HVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDL 90 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl 90 (174)
..+.++|.++++.|++.++. +++|++++++|+..... ...+..+.+|+++++++|++++++|||+
T Consensus 91 ~~~~~~~~~~~~~ii~~~~~---~~~vi~~~~~p~~~~~~------------~~~~~~~~~~n~~~~~~a~~~~~~~vd~ 155 (193)
T cd01835 91 QLSARAFLFGLNQLLEEAKR---LVPVLVVGPTPVDEAKM------------PYSNRRIARLETAFAEVCLRRDVPFLDT 155 (193)
T ss_pred ccCHHHHHHHHHHHHHHHhc---CCcEEEEeCCCcccccc------------chhhHHHHHHHHHHHHHHHHcCCCeEeC
Confidence 46789999999999998875 57899999988764221 1346778899999999999999999999
Q ss_pred hHHHhhcCCcccccc-cCCCCCChHHHHHHHHHHHH
Q 030618 91 WTAMQQRDDWLTTCF-MDGIHFSSEGSKIVVKEILK 125 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~-~DGvHpn~~Gy~~~a~~l~~ 125 (174)
++.+.+...+...+. .||+|||++||++||+.|+.
T Consensus 156 ~~~~~~~~~~~~~~~~~Dg~Hpn~~G~~~~a~~~~~ 191 (193)
T cd01835 156 FTPLLNHPQWRRELAATDGIHPNAAGYGWLAWLVLH 191 (193)
T ss_pred ccchhcCcHHHHhhhccCCCCCCHHHHHHHHHHHhc
Confidence 998887654443344 69999999999999999863
No 17
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.62 E-value=3.2e-15 Score=111.46 Aligned_cols=103 Identities=17% Similarity=0.218 Sum_probs=84.5
Q ss_pred CCCCC-CCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc
Q 030618 5 STGLG-PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM 83 (174)
Q Consensus 5 ~~~~~-~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~ 83 (174)
|+|.. .+.++++|.++++++|+.+++.+|+++|++++++|..... .+.....|++.++++|+++
T Consensus 49 G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p~~~ii~~~~~p~~~~~---------------~~~~~~~~n~~l~~~~~~~ 113 (157)
T cd01833 49 GTNDLVLNRDPDTAPDRLRALIDQMRAANPDVKIIVATLIPTTDAS---------------GNARIAEYNAAIPGVVADL 113 (157)
T ss_pred cCcccccCCCHHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCCCcc---------------hhHHHHHHHHHHHHHHHHH
Confidence 44443 4478999999999999999998889999999987754321 2566778999999999984
Q ss_pred -----CCeEEechHHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHH
Q 030618 84 -----DVKAIDLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 84 -----~v~~iDl~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
++.|+|+++.+.. ..+..||+|||++||+.||+.++++|
T Consensus 114 ~~~~~~v~~vd~~~~~~~-----~~~~~Dg~Hpn~~Gy~~~a~~~~~~~ 157 (157)
T cd01833 114 RTAGSPVVLVDMSTGYTT-----ADDLYDGLHPNDQGYKKMADAWYEAL 157 (157)
T ss_pred hcCCCCEEEEecCCCCCC-----cccccCCCCCchHHHHHHHHHHHhhC
Confidence 6899999987754 35789999999999999999998764
No 18
>cd01844 SGNH_hydrolase_like_6 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.58 E-value=6.2e-15 Score=112.48 Aligned_cols=101 Identities=19% Similarity=0.131 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc--CCeEEechHH
Q 030618 16 EYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM--DVKAIDLWTA 93 (174)
Q Consensus 16 ~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~--~v~~iDl~~~ 93 (174)
+|.+|++.||+.+++.+|+++|++++|++........ ....+.++.+..+++.+++++++. ++.|||+++.
T Consensus 75 ~~~~~~~~~i~~i~~~~p~~~iil~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~id~~~~ 147 (177)
T cd01844 75 MVRERLGPLVKGLRETHPDTPILLVSPRYCPDAELTP-------GRGKLTLAVRRALREAFEKLRADGVPNLYYLDGEEL 147 (177)
T ss_pred HHHHHHHHHHHHHHHHCcCCCEEEEecCCCCccccCc-------chhHHHHHHHHHHHHHHHHHHhcCCCCEEEecchhh
Confidence 8999999999999998889999999998875321110 112345667777888887776543 6999999876
Q ss_pred HhhcCCcccccccCCCCCChHHHHHHHHHHHHHH
Q 030618 94 MQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 94 ~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
+... ..++.||+|||++||++|++.+.++|
T Consensus 148 ~~~~----~~~~~DglHpn~~Gy~~~a~~l~~~~ 177 (177)
T cd01844 148 LGPD----GEALVDGIHPTDLGHMRYADRFEPVL 177 (177)
T ss_pred cCCC----CCCCCCCCCCCHHHHHHHHHHHhhcC
Confidence 6543 24788999999999999999998764
No 19
>cd01822 Lysophospholipase_L1_like Lysophospholipase L1-like subgroup of SGNH-hydrolases. The best characterized member in this family is TesA, an E. coli periplasmic protein with thioesterase, esterase, arylesterase, protease and lysophospholipase activity.
Probab=99.58 E-value=2.6e-14 Score=108.05 Aligned_cols=103 Identities=15% Similarity=0.206 Sum_probs=78.9
Q ss_pred CCCC-CCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc
Q 030618 5 STGL-GPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM 83 (174)
Q Consensus 5 ~~~~-~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~ 83 (174)
|+|. ....++++|.+++++||+.+++ .+++||+++++.... . ......+|++.++++|+++
T Consensus 73 G~ND~~~~~~~~~~~~~l~~li~~~~~--~~~~vil~~~~~~~~--~--------------~~~~~~~~~~~~~~~a~~~ 134 (177)
T cd01822 73 GGNDGLRGIPPDQTRANLRQMIETAQA--RGAPVLLVGMQAPPN--Y--------------GPRYTRRFAAIYPELAEEY 134 (177)
T ss_pred cCcccccCCCHHHHHHHHHHHHHHHHH--CCCeEEEEecCCCCc--c--------------chHHHHHHHHHHHHHHHHc
Confidence 4443 3568899999999999999999 579999998642110 0 1123567999999999999
Q ss_pred CCeEEechH-HHhhcCCcccccccCCCCCChHHHHHHHHHHHHHHH
Q 030618 84 DVKAIDLWT-AMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLR 128 (174)
Q Consensus 84 ~v~~iDl~~-~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~ 128 (174)
++.++|++. .+.. ....+..||+|||++||++||+.|.+.|+
T Consensus 135 ~~~~~d~~~~~~~~---~~~~~~~DgvHpn~~G~~~~a~~i~~~i~ 177 (177)
T cd01822 135 GVPLVPFFLEGVAG---DPELMQSDGIHPNAEGQPIIAENVWPALE 177 (177)
T ss_pred CCcEechHHhhhhh---ChhhhCCCCCCcCHHHHHHHHHHHHHhhC
Confidence 999999752 2222 22347899999999999999999998873
No 20
>cd04506 SGNH_hydrolase_YpmR_like Members of the SGNH-hydrolase superfamily, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid. This subfamily contains sequences similar to Bacillus YpmR.
Probab=99.58 E-value=1.4e-14 Score=112.42 Aligned_cols=102 Identities=16% Similarity=0.221 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEcCC-CCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcC-CeEEec
Q 030618 13 PLPEYIENMRKIALHLKSLSAKTRIIFLSAP-PINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMD-VKAIDL 90 (174)
Q Consensus 13 ~l~~y~~nl~~iI~~ir~~~~~~~IILitpp-p~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~-v~~iDl 90 (174)
+.++|.+++++||+.+|+.+++++|++++++ |..... . .....+..+.+|+++++++|++++ +.++|+
T Consensus 100 ~~~~~~~~l~~~i~~ir~~~p~~~Ivv~~~~~p~~~~~-~---------~~~~~~~~~~~~n~~~~~~a~~~~~v~~vd~ 169 (204)
T cd04506 100 AEETYQNNLKKIFKEIRKLNPDAPIFLVGLYNPFYVYF-P---------NITEINDIVNDWNEASQKLASQYKNAYFVPI 169 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCeEEEEecCCcccccc-c---------hHHHHHHHHHHHHHHHHHHHHhCCCeEEEeh
Confidence 5678999999999999998889999998753 322110 0 011246778899999999999997 999999
Q ss_pred hHHHhhcCCcccccccCCCCCChHHHHHHHHHHHH
Q 030618 91 WTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILK 125 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~ 125 (174)
++.+.... ....+..||+|||++||+.||+.+.+
T Consensus 170 ~~~~~~~~-~~~~~~~Dg~Hpn~~G~~~~a~~l~~ 203 (204)
T cd04506 170 FDLFSDGQ-NKYLLTSDHFHPNDKGYQLIADRVFK 203 (204)
T ss_pred HHhhcCCc-ccccccccCcCCCHHHHHHHHHHHHh
Confidence 99887643 12357789999999999999999875
No 21
>PRK10528 multifunctional acyl-CoA thioesterase I and protease I and lysophospholipase L1; Provisional
Probab=99.55 E-value=7.7e-14 Score=108.09 Aligned_cols=105 Identities=17% Similarity=0.191 Sum_probs=79.0
Q ss_pred CCCC-CCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcC-CCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHH
Q 030618 5 STGL-GPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSA-PPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQE 82 (174)
Q Consensus 5 ~~~~-~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitp-pp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~ 82 (174)
|+|. ..++++++|.++++.|++.+++ .+++++|+++ .|.. + .....+.|+++++++|++
T Consensus 80 GtND~~~~~~~~~~~~~l~~li~~~~~--~~~~~ill~~~~P~~---~--------------~~~~~~~~~~~~~~~a~~ 140 (191)
T PRK10528 80 GGNDGLRGFPPQQTEQTLRQIIQDVKA--ANAQPLLMQIRLPAN---Y--------------GRRYNEAFSAIYPKLAKE 140 (191)
T ss_pred ccCcCccCCCHHHHHHHHHHHHHHHHH--cCCCEEEEEeecCCc---c--------------cHHHHHHHHHHHHHHHHH
Confidence 4444 3568999999999999999999 4677777753 2211 0 112345699999999999
Q ss_pred cCCeEEechHHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHHHhc
Q 030618 83 MDVKAIDLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLREA 130 (174)
Q Consensus 83 ~~v~~iDl~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~ 130 (174)
++++|+|++...... ....+..||+|||++||++||+.+++.|++.
T Consensus 141 ~~v~~id~~~~~~~~--~~~~~~~DGiHpn~~Gy~~~A~~i~~~l~~~ 186 (191)
T PRK10528 141 FDIPLLPFFMEEVYL--KPQWMQDDGIHPNRDAQPFIADWMAKQLQPL 186 (191)
T ss_pred hCCCccHHHHHhhcc--CHhhcCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 999999988544321 1224678999999999999999999999873
No 22
>cd01840 SGNH_hydrolase_yrhL_like yrhL-like subfamily of SGNH-hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Most members of this sub-family appear to co-occur with N-terminal acyltransferase domains. Might be involved in lipid metabolism.
Probab=99.49 E-value=1.4e-13 Score=102.63 Aligned_cols=86 Identities=15% Similarity=0.188 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc-CCeEEechHHH
Q 030618 16 EYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM-DVKAIDLWTAM 94 (174)
Q Consensus 16 ~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~-~v~~iDl~~~~ 94 (174)
.+.+|+++|++.++ ++++|+|++|++- . .+.+++|+.++++|+++ ++.++|+++.+
T Consensus 64 ~~~~nl~~ii~~~~---~~~~ivlv~~~~~--~------------------~~~~~~n~~~~~~a~~~~~v~~id~~~~~ 120 (150)
T cd01840 64 FTKDQLDELLDALG---PDRQVYLVNPHVP--R------------------PWEPDVNAYLLDAAKKYKNVTIIDWYKAA 120 (150)
T ss_pred CCHHHHHHHHHHcC---CCCEEEEEECCCC--c------------------chHHHHHHHHHHHHHHCCCcEEecHHHHh
Confidence 37899999999884 4689999998731 0 11357899999999999 99999999877
Q ss_pred hhcCCcccccccCCCCCChHHHHHHHHHHHHHH
Q 030618 95 QQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 95 ~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
.... +.+..||+|||++||++|++.|.+.|
T Consensus 121 ~~~~---~~~~~DgiHpn~~G~~~~a~~i~~ai 150 (150)
T cd01840 121 KGHP---DWFYGDGVHPNPAGAKLYAALIAKAI 150 (150)
T ss_pred cccc---hhhcCCCCCCChhhHHHHHHHHHHhC
Confidence 5422 35678999999999999999998764
No 23
>cd01830 XynE_like SGNH_hydrolase subfamily, similar to the putative arylesterase/acylhydrolase from the rumen anaerobe Prevotella bryantii XynE. The P. bryantii XynE gene is located in a xylanase gene cluster. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.47 E-value=1.5e-13 Score=107.21 Aligned_cols=101 Identities=13% Similarity=0.127 Sum_probs=72.3
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEe
Q 030618 10 PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAID 89 (174)
Q Consensus 10 ~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iD 89 (174)
+.+++++|.+|+++|++.+++ .+++||+++++|+....+.. ........++++++++.+. + ..+||
T Consensus 97 ~~~~~~~~~~~l~~ii~~~~~--~~~~vil~t~~P~~~~~~~~----------~~~~~~~~~~n~~~~~~~~-~-~~~vD 162 (204)
T cd01830 97 APVTAEELIAGYRQLIRRAHA--RGIKVIGATITPFEGSGYYT----------PAREATRQAVNEWIRTSGA-F-DAVVD 162 (204)
T ss_pred CCCCHHHHHHHHHHHHHHHHH--CCCeEEEecCCCCCCCCCCC----------HHHHHHHHHHHHHHHccCC-C-CeeeE
Confidence 456999999999999999999 57999999988875422110 1112233566777766432 2 24799
Q ss_pred chHHHhhcCC---c-ccccccCCCCCChHHHHHHHHHHH
Q 030618 90 LWTAMQQRDD---W-LTTCFMDGIHFSSEGSKIVVKEIL 124 (174)
Q Consensus 90 l~~~~~~~~~---~-~~~~~~DGvHpn~~Gy~~~a~~l~ 124 (174)
+++.|.+..+ . ...+..||||||++||++||+.+.
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~A~~i~ 201 (204)
T cd01830 163 FDAALRDPADPSRLRPAYDSGDHLHPNDAGYQAMADAVD 201 (204)
T ss_pred hHHhhcCCCCchhcccccCCCCCCCCCHHHHHHHHHhcC
Confidence 9998876532 2 234568999999999999999874
No 24
>cd01831 Endoglucanase_E_like Endoglucanase E-like members of the SGNH hydrolase family; Endoglucanase E catalyzes the endohydrolysis of 1,4-beta-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans.
Probab=99.46 E-value=4.7e-13 Score=101.33 Aligned_cols=103 Identities=16% Similarity=0.133 Sum_probs=73.0
Q ss_pred CCCCCCC---CChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHH
Q 030618 5 STGLGPH---VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQ 81 (174)
Q Consensus 5 ~~~~~~~---v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~ 81 (174)
|+|.... .+.++|.++++.||+.+++..|.++|+++++|+..... ..++.+..+++.+++.+.
T Consensus 64 G~ND~~~~~~~~~~~~~~~~~~li~~i~~~~p~~~i~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~ 129 (169)
T cd01831 64 GTNDFSTGNNPPGEDFTNAYVEFIEELRKRYPDAPIVLMLGPMLFGPY--------------GTEEEIKRVAEAFKDQKS 129 (169)
T ss_pred CcCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCeEEEEecCcccccc--------------ccHHHHHHHHHHHHhcCC
Confidence 4554432 47999999999999999998888888888766532110 113444444444443332
Q ss_pred HcCCeEEechHHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHHH
Q 030618 82 EMDVKAIDLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLR 128 (174)
Q Consensus 82 ~~~v~~iDl~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~ 128 (174)
.++.|+|++..+. ..+..||+|||++||+.||+.|++.|+
T Consensus 130 -~~v~~id~~~~~~------~~~~~DgiHPn~~G~~~iA~~l~~~i~ 169 (169)
T cd01831 130 -KKVHYFDTPGILQ------HNDIGCDWHPTVAGHQKIAKHLLPAIK 169 (169)
T ss_pred -ceEEEEecccccC------CCCcCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3599999876543 135689999999999999999999874
No 25
>cd01823 SEST_like SEST_like. A family of secreted SGNH-hydrolases similar to Streptomyces scabies esterase (SEST), a causal agent of the potato scab disease, which hydrolyzes a specific ester bond in suberin, a plant lipid. The tertiary fold of this enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxylic acid.
Probab=99.42 E-value=9.7e-13 Score=105.75 Aligned_cols=115 Identities=12% Similarity=0.123 Sum_probs=83.5
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhc------cccccccCCChHHHHHHHHHHHHHHHHcC
Q 030618 11 HVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHL------STDFAVWGRTNESCRIYSEACLKLCQEMD 84 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~------~~~~~~~~~~n~~i~~y~~~i~~lA~~~~ 84 (174)
..+.+.|.++++.+|+.+++..++++|++++.|++.......... ..........++.+.++|++++++|++++
T Consensus 123 ~~~~~~~~~~l~~~l~~i~~~~p~a~I~~~gyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ln~~i~~~a~~~~ 202 (259)
T cd01823 123 DAALDEVGARLKAVLDRIRERAPNARVVVVGYPRLFPPDGGDCDKSCSPGTPLTPADRPELNQLVDKLNALIRRAAADAG 202 (259)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCcEEEEecccccccCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 355889999999999999988799999999966543211000000 00000112456778899999999999999
Q ss_pred ---CeEEechHHHhhcC------------CcccccccCCCCCChHHHHHHHHHHHH
Q 030618 85 ---VKAIDLWTAMQQRD------------DWLTTCFMDGIHFSSEGSKIVVKEILK 125 (174)
Q Consensus 85 ---v~~iDl~~~~~~~~------------~~~~~~~~DGvHpn~~Gy~~~a~~l~~ 125 (174)
+.|||++..+.... .....+..||+|||.+||+.||+.|.+
T Consensus 203 ~~~v~fvD~~~~f~~~~~~~~~~~~~~~~~~~~~~~~d~~HPn~~G~~~~A~~i~~ 258 (259)
T cd01823 203 DYKVRFVDTDAPFAGHRACSPDPWSRSVLDLLPTRQGKPFHPNAAGHRAIADLIVD 258 (259)
T ss_pred CceEEEEECCCCcCCCccccCCCccccccCCCCCCCccCCCCCHHHHHHHHHHHhh
Confidence 99999999886431 112235689999999999999999875
No 26
>cd01842 SGNH_hydrolase_like_5 SGNH_hydrolase subfamily. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=99.40 E-value=4.4e-12 Score=96.69 Aligned_cols=113 Identities=14% Similarity=0.131 Sum_probs=84.6
Q ss_pred CChHHHHHHHHHHHHHHHhhC-CCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEec
Q 030618 12 VPLPEYIENMRKIALHLKSLS-AKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDL 90 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~-~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl 90 (174)
.++++|++|+++++..+++.. +.+++|+.+.+|+.+..-......+...........+.+||.+.+++|+++++.++|+
T Consensus 69 ~~~~~Y~~NL~~Lf~rLk~~lp~~allIW~tt~Pv~~~~~ggfl~~~~~~~~~~lr~dv~eaN~~A~~va~~~~~dVlDL 148 (183)
T cd01842 69 NSMKTYRENLERLFSKLDSVLPIECLIVWNTAMPVAEEIKGGFLLPELHDLSKSLRYDVLEGNFYSATLAKCYGFDVLDL 148 (183)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCccEEEEecCCCCCcCCcCceeccccccccccchhHHHHHHHHHHHHHHHcCceeeeh
Confidence 489999999999999999743 7899999998887643211000000000111223557789999999999999999999
Q ss_pred hHHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHH
Q 030618 91 WTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
|..+.... .....||||+|..||+.|++.++..|
T Consensus 149 h~~fr~~~---~~~~~DgVHwn~~a~r~ls~lll~hI 182 (183)
T cd01842 149 HYHFRHAM---QHRVRDGVHWNYVAHRRLSNLLLAHV 182 (183)
T ss_pred HHHHHhHH---hhcCCCCcCcCHHHHHHHHHHHHHhh
Confidence 99885433 13569999999999999999999876
No 27
>PF13472 Lipase_GDSL_2: GDSL-like Lipase/Acylhydrolase family; PDB: 1ES9_A 1WAB_A 3DT9_A 1BWQ_A 1FXW_A 3DT6_A 1BWR_A 3DT8_A 1BWP_A 2WAA_A ....
Probab=99.38 E-value=2.8e-12 Score=95.36 Aligned_cols=98 Identities=24% Similarity=0.411 Sum_probs=76.6
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEec
Q 030618 11 HVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDL 90 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl 90 (174)
..+.+.|.+++++||+.++. .+ +|+++++++........ ........+.+|+++++++|+++++.|+|+
T Consensus 81 ~~~~~~~~~~l~~~i~~~~~--~~-~vi~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~a~~~~~~~id~ 149 (179)
T PF13472_consen 81 DTSPEQYEQNLRRIIEQLRP--HG-PVILVSPPPRGPDPRDP--------KQDYLNRRIDRYNQAIRELAKKYGVPFIDL 149 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHT--TS-EEEEEE-SCSSSSTTTT--------HTTCHHHHHHHHHHHHHHHHHHCTEEEEEH
T ss_pred cccHHHHHHHHHHHHHhhcc--cC-cEEEecCCCcccccccc--------cchhhhhhHHHHHHHHHHHHHHcCCEEEEC
Confidence 35688999999999999988 34 99999988765432110 012346778899999999999999999999
Q ss_pred hHHHhhcCC-cccccccCCCCCChHHHHHH
Q 030618 91 WTAMQQRDD-WLTTCFMDGIHFSSEGSKIV 119 (174)
Q Consensus 91 ~~~~~~~~~-~~~~~~~DGvHpn~~Gy~~~ 119 (174)
+..+.+... ....+..||+|||++||++|
T Consensus 150 ~~~~~~~~~~~~~~~~~D~~Hp~~~G~~~~ 179 (179)
T PF13472_consen 150 FDAFDDHDGWFPKYYFSDGVHPNPAGHQLI 179 (179)
T ss_dssp HHHHBTTTSCBHTCTBTTSSSBBHHHHHHH
T ss_pred HHHHccccccchhhcCCCCCCcCHHHhCcC
Confidence 999876543 23467899999999999987
No 28
>cd00229 SGNH_hydrolase SGNH_hydrolase, or GDSL_hydrolase, is a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the typical Ser-His-Asp(Glu) triad from other serine hydrolases, but may lack the carboxlic acid.
Probab=99.35 E-value=1.2e-11 Score=91.28 Aligned_cols=99 Identities=19% Similarity=0.309 Sum_probs=81.8
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcC----CeE
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMD----VKA 87 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~----v~~ 87 (174)
.+...+..+++++++.+++..++++|+++++++...... ..+.....++++++++|++++ +.+
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~vv~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (187)
T cd00229 84 TSIDEFKANLEELLDALRERAPGAKVILITPPPPPPREG-------------LLGRALPRYNEAIKAVAAENPAPSGVDL 150 (187)
T ss_pred cCHHHHHHHHHHHHHHHHHHCCCCcEEEEeCCCCCCCch-------------hhHHHHHHHHHHHHHHHHHcCCCcceEE
Confidence 578999999999999999766899999999988653221 134556789999999999999 999
Q ss_pred EechHHHhhcCCcccccccCCCCCChHHHHHHHHHHHH
Q 030618 88 IDLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILK 125 (174)
Q Consensus 88 iDl~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~ 125 (174)
+|++..+... ....+..||+|||++||+++|+.+++
T Consensus 151 ~d~~~~~~~~--~~~~~~~Dg~H~~~~G~~~~a~~i~~ 186 (187)
T cd00229 151 VDLAALLGDE--DKSLYSPDGIHPNPAGHKLIAEALAS 186 (187)
T ss_pred EEhhhhhCCC--ccccccCCCCCCchhhHHHHHHHHhc
Confidence 9999888654 12357899999999999999999875
No 29
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=99.16 E-value=4.7e-11 Score=91.63 Aligned_cols=102 Identities=16% Similarity=0.235 Sum_probs=44.0
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc------CC
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM------DV 85 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~------~v 85 (174)
.+.+.|.+++..+|+.+|+.+|.++||++++.......+.. .......++++++++..++. ++
T Consensus 71 ~~~~~~~~~~~~fv~~iR~~hP~tPIllv~~~~~~~~~~~~-----------~~~~~~~~~~~~~r~~v~~l~~~g~~nl 139 (178)
T PF14606_consen 71 MSPEEFRERLDGFVKTIREAHPDTPILLVSPIPYPAGYFDN-----------SRGETVEEFREALREAVEQLRKEGDKNL 139 (178)
T ss_dssp CCTTTHHHHHHHHHHHHHTT-SSS-EEEEE----TTTTS-------------TTS--HHHHHHHHHHHHHHHHHTT-TTE
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCEEEEecCCccccccCc-----------hHHHHHHHHHHHHHHHHHHHHHcCCCcE
Confidence 67889999999999999999999999999987654332211 11233445555555554443 89
Q ss_pred eEEechHHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHHH
Q 030618 86 KAIDLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLR 128 (174)
Q Consensus 86 ~~iDl~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~ 128 (174)
.|++-.+.+... ...+.||+|||+.|+..||+.+.+.|+
T Consensus 140 ~~l~g~~llg~d----~e~tvDgvHP~DlG~~~~a~~l~~~ir 178 (178)
T PF14606_consen 140 YYLDGEELLGDD----HEATVDGVHPNDLGMMRMADALEPVIR 178 (178)
T ss_dssp EEE-HHHCS----------------------------------
T ss_pred EEeCchhhcCcc----cccccccccccccccccccccccccCC
Confidence 999976655432 257899999999999999999988774
No 30
>COG2755 TesA Lysophospholipase L1 and related esterases [Amino acid transport and metabolism]
Probab=99.06 E-value=1.2e-09 Score=85.31 Aligned_cols=110 Identities=18% Similarity=0.207 Sum_probs=80.2
Q ss_pred CCCCCh--HHHHHHHHHHHHHHHhhCCC-----ceEE-EEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHH
Q 030618 9 GPHVPL--PEYIENMRKIALHLKSLSAK-----TRII-FLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLC 80 (174)
Q Consensus 9 ~~~v~l--~~y~~nl~~iI~~ir~~~~~-----~~II-Litppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA 80 (174)
.....+ +.+..|++.|++.+++.++. +.++ +...+|..... .....+.....+++.+.++|
T Consensus 93 ~~~~~p~~~~~~~~~~~li~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-----------~~~~~~~~~~~~~~~~~~la 161 (216)
T COG2755 93 LRGFSPNAAEFTKNLRQLIQALRKANPLAGLTPIPVLLVGIAPPFIATD-----------FPTYGADWFHAANEILAQLA 161 (216)
T ss_pred hcccCccHHHHHHHHHHHHHHHHHhcccccccccceeEEEecCCccccc-----------hhHHHHHHHHHHHHHHHHhh
Confidence 345555 99999999999999996543 4443 22222221100 11235667778999999999
Q ss_pred HHcCCeEEechHHHhhcCCc-ccccccCCCCCChHHHHHHHHHHHHHHHhc
Q 030618 81 QEMDVKAIDLWTAMQQRDDW-LTTCFMDGIHFSSEGSKIVVKEILKVLREA 130 (174)
Q Consensus 81 ~~~~v~~iDl~~~~~~~~~~-~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~ 130 (174)
.++.+++.|++..... ... ...+..||+|||++||+.|++.+.+.+.+.
T Consensus 162 ~~~~v~~~d~~~~~~~-~~~~~~~~~~Dg~H~n~~Gy~~~a~~l~~~l~~~ 211 (216)
T COG2755 162 NELFVPLADLFDAGVD-GGRLPELLTEDGLHPNAKGYQALAEALAEVLAKL 211 (216)
T ss_pred hhcCccchHHHhcccc-cccCcccccCCCCCcCHhhHHHHHHHHHHHHHHH
Confidence 9999999999987764 222 234558999999999999999999999985
No 31
>PF00657 Lipase_GDSL: GDSL-like Lipase/Acylhydrolase; InterPro: IPR001087 A variety of lipolytic enzymes with serine as part of the active site have been identified []. Members of this entry include; Aeromonas hydrophila lipase, Vibrio mimicus arylesterase, Vibrio parahaemolyticus thermolabile haemolysin, rabbit phospholipase (AdRab-B), and Brassica napus anter-specific proline-rich protein.; GO: 0016788 hydrolase activity, acting on ester bonds, 0006629 lipid metabolic process; PDB: 2WAO_A 2WAB_A 1V2G_A 1U8U_A 1JRL_A 1IVN_A 1J00_A 1DEO_A 1K7C_A 1PP4_A ....
Probab=99.03 E-value=5.5e-10 Score=86.92 Aligned_cols=113 Identities=22% Similarity=0.377 Sum_probs=76.1
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhCCCce------EEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHH--
Q 030618 9 GPHVPLPEYIENMRKIALHLKSLSAKTR------IIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLC-- 80 (174)
Q Consensus 9 ~~~v~l~~y~~nl~~iI~~ir~~~~~~~------IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA-- 80 (174)
....+.+.+.++++++|+.++. .+++ ++++..+|.....................+..+..||+.+++++
T Consensus 103 ~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~l~~~~~~ 180 (234)
T PF00657_consen 103 DNNTSVEEFVENLRNAIKRLRS--NGARLIIVANIVVINLPPIGCLPAWSSNNKDSASCIERLNAIVAAFNSALREVAAQ 180 (234)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHH--TTTEEEEEEEEEEEHHC-GGGSTTHHHTHTTTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHhhHhhhhhhhhhHHhc--cCCccccccccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHhhh
Confidence 3456789999999999999996 3454 33343343221000000000111234566788899999999999
Q ss_pred ------HHcCCeEEechHHHhhcCCc-----ccccccCCCCCChHHHHHHHHHH
Q 030618 81 ------QEMDVKAIDLWTAMQQRDDW-----LTTCFMDGIHFSSEGSKIVVKEI 123 (174)
Q Consensus 81 ------~~~~v~~iDl~~~~~~~~~~-----~~~~~~DGvHpn~~Gy~~~a~~l 123 (174)
...++.++|++..+....+. ...+..||+|||++||++||+.|
T Consensus 181 l~~~~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~D~~Hpt~~g~~~iA~~i 234 (234)
T PF00657_consen 181 LRKDYPKGANVPYFDIYSIFSDMYGIQNPENDKYMFWDGVHPTEKGHKIIAEYI 234 (234)
T ss_dssp HHHCHHHHCTEEEEEHHHHHHHHHHHHHGGHHHCBBSSSSSB-HHHHHHHHHHH
T ss_pred cccccccCCceEEEEHHHHHHHhhhccCcccceeccCCCcCCCHHHHHHHHcCC
Confidence 68899999999988764211 12478999999999999999976
No 32
>cd01824 Phospholipase_B_like Phospholipase-B_like. This subgroup of the SGNH-family of lipolytic enzymes may have both esterase and phospholipase-A/lysophospholipase activity. It's members may be involved in the conversion of phosphatidylcholine to fatty acids and glycerophosphocholine, perhaps in the context of dietary lipid uptake. Members may be membrane proteins. The tertiary fold of the SGNH-hydrolases is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; Its active site closely resembles two of the three components of typical Ser-His-Asp(Glu) triad from other serine hydrolases.
Probab=98.99 E-value=3.9e-09 Score=87.06 Aligned_cols=118 Identities=14% Similarity=0.172 Sum_probs=82.2
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhh-----------hhhcc----ccccccCCChHHHHHHHHHH
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIF-----------ESHLS----TDFAVWGRTNESCRIYSEAC 76 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~-----------~~~~~----~~~~~~~~~n~~i~~y~~~i 76 (174)
.+++.|.+|++++++.+|+..|.+.|+|+++|.+..-... ...+. .......+..+..++|++.+
T Consensus 142 ~~~~~~~~nL~~~L~~Lr~~~P~~~V~lv~~~~~~~l~~~~~~p~~c~~~~~~~C~c~~~~~~~~~~~~~~~~~~y~~~~ 221 (288)
T cd01824 142 GSPQTFVKNLRKALDILRDEVPRAFVNLVGLLNVASLRSLTKKPLQCETLLAPECPCLLGPTENSYQDLKKFYKEYQNEV 221 (288)
T ss_pred cCHHHHHHHHHHHHHHHHHhCCCcEEEEEcCCCcHHHHHhccCCccccccCCCcCCCcCCCCcchHHHHHHHHHHHHHHH
Confidence 7799999999999999999889999999998765321100 00010 00001124556788999999
Q ss_pred HHHHHH-------cCCeEEechHHHhhc---CC-cccccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 77 LKLCQE-------MDVKAIDLWTAMQQR---DD-WLTTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 77 ~~lA~~-------~~v~~iDl~~~~~~~---~~-~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
+++|++ +++.+.++....... .+ -...+..||+|||.+||.+||+.+...|.+
T Consensus 222 ~eia~~~~~~~~~f~vv~qPf~~~~~~~~~~~g~d~~~~~~D~~Hps~~G~~~ia~~lwn~m~~ 285 (288)
T cd01824 222 EEIVESGEFDREDFAVVVQPFFEDTSLPPLPDGPDLSFFSPDCFHFSQRGHAIAANALWNNLLE 285 (288)
T ss_pred HHHHhcccccccCccEEeeCchhccccccccCCCcchhcCCCCCCCCHHHHHHHHHHHHHHHhc
Confidence 999999 455565554432211 01 113578999999999999999999988876
No 33
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.93 E-value=7.5e-09 Score=85.28 Aligned_cols=100 Identities=22% Similarity=0.364 Sum_probs=85.8
Q ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHH
Q 030618 14 LPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTA 93 (174)
Q Consensus 14 l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~ 93 (174)
.++|.+++.++++.++. +.++|+|++.|++.. ...|+.+.-+|+.+++.+++++-.+||+|+.
T Consensus 208 ~~eY~kRvd~~l~ia~~--~~~~V~WvGmP~~r~---------------~~l~~dm~~ln~iy~~~vE~~~gk~i~i~d~ 270 (354)
T COG2845 208 TKEYEKRVDAILKIAHT--HKVPVLWVGMPPFRK---------------KKLNADMVYLNKIYSKAVEKLGGKFIDIWDG 270 (354)
T ss_pred HHHHHHHHHHHHHHhcc--cCCcEEEeeCCCccc---------------cccchHHHHHHHHHHHHHHHhCCeEEEeccc
Confidence 57899999999999999 789999999998642 2467778889999999999999999999999
Q ss_pred HhhcCC-------------cccccccCCCCCChHHHHHHHHHHHHHHHhc
Q 030618 94 MQQRDD-------------WLTTCFMDGIHFSSEGSKIVVKEILKVLREA 130 (174)
Q Consensus 94 ~~~~~~-------------~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~ 130 (174)
+....+ +-.+...||||+|.+|.+.|+..+.+.|+..
T Consensus 271 ~v~e~G~~f~~~~~D~NGq~vrlR~~DGIh~T~~Gkrkla~~~~k~I~~~ 320 (354)
T COG2845 271 FVDEGGKDFVTTGVDINGQPVRLRAKDGIHFTKEGKRKLAFYLEKPIRAE 320 (354)
T ss_pred ccccCCceeEEeccccCCceEEEeccCCceechhhHHHHHHHHHHHHHhh
Confidence 876542 1235689999999999999999999999873
No 34
>cd01826 acyloxyacyl_hydrolase_like Acyloxyacyl-hydrolase like subfamily of the SGNH-hydrolase family. Acyloxyacyl-hydrolase is a leukocyte-secreted enzyme that deacetylates bacterial lipopolysaccharides.
Probab=98.79 E-value=4.7e-08 Score=80.66 Aligned_cols=116 Identities=16% Similarity=0.144 Sum_probs=79.3
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhCCC-ceEEEEcCCCCChhhhhhh-----------------------h------cccc
Q 030618 9 GPHVPLPEYIENMRKIALHLKSLSAK-TRIIFLSAPPINKQQIFES-----------------------H------LSTD 58 (174)
Q Consensus 9 ~~~v~l~~y~~nl~~iI~~ir~~~~~-~~IILitppp~~~~~~~~~-----------------------~------~~~~ 58 (174)
...+++++|++|+.++++.+++..|. .+|+|++.|....- +... + +-+|
T Consensus 143 ~~~tp~eefr~NL~~~L~~Lr~~lP~~s~ViLvgmpd~~~L-~~~~~~r~hplg~~~~~vty~~~y~~lncl~~spC~gw 221 (305)
T cd01826 143 INHTTPEEFYENVMEALKYLDTKLPNGSHVILVGLVDGRIL-YDTLHNRLHPIGQLNKDVTYPNLYDYLNCLQVSPCWGW 221 (305)
T ss_pred ccCcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEeccchhhh-hhhhccccccchhcccccchhhhhhhhcccccCCcccc
Confidence 34799999999999999999997655 79999998873110 1000 0 0011
Q ss_pred c----cccCCChHHHHHHHHHHHHHHHHc-----CCeEEec-hHHHhhc----CC--cccccccCCCCCChHHHHHHHHH
Q 030618 59 F----AVWGRTNESCRIYSEACLKLCQEM-----DVKAIDL-WTAMQQR----DD--WLTTCFMDGIHFSSEGSKIVVKE 122 (174)
Q Consensus 59 ~----~~~~~~n~~i~~y~~~i~~lA~~~-----~v~~iDl-~~~~~~~----~~--~~~~~~~DGvHpn~~Gy~~~a~~ 122 (174)
. .......+..++++..++++|++. ++.++|+ .+.+... ++ ++.....||+|||..|+.++|+.
T Consensus 222 ~~~n~t~rn~t~~~a~~l~~~~~~ia~~~~f~nF~v~~~~f~l~~v~~~~~~~g~~~~~~i~~~DgfHpsq~g~~l~a~~ 301 (305)
T cd01826 222 LNSNETLRNLTSERAAQLSNVLKRIAANETFNNFDVHYIDFPIQQIVDMWIAFGGQTWQLIEPVDGFHPSQIANALLAEV 301 (305)
T ss_pred ccccccchhHHHHHHHHHHHHHHHHHhhccccceeEEEecchHHHHhhHHHhcCCCchhhcccccCCCccHHHHHHHHHH
Confidence 0 012233456778999999999998 8999987 4444332 22 22222379999999999999998
Q ss_pred HHH
Q 030618 123 ILK 125 (174)
Q Consensus 123 l~~ 125 (174)
+.+
T Consensus 302 lW~ 304 (305)
T cd01826 302 FWK 304 (305)
T ss_pred hhc
Confidence 753
No 35
>cd01846 fatty_acyltransferase_like Fatty acyltransferase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Might catalyze fatty acid transfer between phosphatidylcholine and sterols.
Probab=98.68 E-value=1.6e-07 Score=75.93 Aligned_cols=110 Identities=14% Similarity=0.179 Sum_probs=78.2
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc-------C
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM-------D 84 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~-------~ 84 (174)
...+.+.+++..+|+++... ...+|+++++|++........... ......+..++.||+.+++.+++. .
T Consensus 124 ~~~~~~~~~~~~~i~~l~~~-g~~~i~v~~~p~~~~~P~~~~~~~---~~~~~~~~~~~~~N~~L~~~l~~l~~~~~~~~ 199 (270)
T cd01846 124 TLVTRAVDNLFQALQRLYAA-GARNFLVLNLPDLGLTPAFQAQGD---AVAARATALTAAYNAKLAEKLAELKAQHPGVN 199 (270)
T ss_pred ccHHHHHHHHHHHHHHHHHC-CCCEEEEeCCCCCCCCcccccCCc---ccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 56788999999999999974 234588888888876543221000 000246677888998888887753 5
Q ss_pred CeEEechHHHhhcC------C-----------------------cccccccCCCCCChHHHHHHHHHHHH
Q 030618 85 VKAIDLWTAMQQRD------D-----------------------WLTTCFMDGIHFSSEGSKIVVKEILK 125 (174)
Q Consensus 85 v~~iDl~~~~~~~~------~-----------------------~~~~~~~DGvHpn~~Gy~~~a~~l~~ 125 (174)
+.++|++..+.+.. + ..+.++.|++|||+++|++||+.+++
T Consensus 200 i~~~D~~~~~~~~~~~p~~yGf~~~~~~C~~~~~~~~~~~~c~~~~~y~fwD~~HpT~~~~~~iA~~~~~ 269 (270)
T cd01846 200 ILLFDTNALFNDILDNPAAYGFTNVTDPCLDYVYSYSPREACANPDKYLFWDEVHPTTAVHQLIAEEVAA 269 (270)
T ss_pred EEEEEhHHHHHHHHhCHHhcCCCcCcchhcCCCccccccCCCCCccceEEecCCCccHHHHHHHHHHHHh
Confidence 78999998876531 1 12346789999999999999998875
No 36
>cd01847 Triacylglycerol_lipase_like Triacylglycerol lipase-like subfamily of the SGNH hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases. Members of this subfamily might hydrolyze triacylglycerol into diacylglycerol and fatty acid anions.
Probab=98.16 E-value=1.6e-05 Score=64.88 Aligned_cols=108 Identities=14% Similarity=0.162 Sum_probs=71.4
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcC---CeEEechH
Q 030618 16 EYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMD---VKAIDLWT 92 (174)
Q Consensus 16 ~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~---v~~iDl~~ 92 (174)
....++...|+++... ...+|++++.||+......... . .......+.....||..+++..++.+ +.++|+|.
T Consensus 138 ~~~~~~~~~v~~L~~~-GAr~ilv~~lpplgc~P~~~~~-~--~~~~~~~n~~~~~~N~~L~~~l~~l~~~~i~~~D~~~ 213 (281)
T cd01847 138 TAAADLASQVKNLLDA-GARYILVPNLPDVSYTPEAAGT-P--AAAAALASALSQTYNQTLQSGLNQLGANNIIYVDTAT 213 (281)
T ss_pred HHHHHHHHHHHHHHHC-CCCEEEEeCCCCcccCcchhhc-c--chhHHHHHHHHHHHHHHHHHHHHhccCCeEEEEEHHH
Confidence 3456666777777774 2346888888887654432100 0 01123467778889988888776654 77999999
Q ss_pred HHhhcC------Cc---------------------------ccccccCCCCCChHHHHHHHHHHHHHH
Q 030618 93 AMQQRD------DW---------------------------LTTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 93 ~~~~~~------~~---------------------------~~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
.+.+.- +. .+.++.|++|||+++|+++++.++..|
T Consensus 214 ~~~~i~~nP~~yGf~~~~~~CC~~~~~~~~~~~~~~~c~~~~~y~fwD~~HpTe~~~~~ia~~~~~~l 281 (281)
T cd01847 214 LLKEVVANPAAYGFTNTTTPACTSTSAAGSGAATLVTAAAQSTYLFADDVHPTPAGHKLIAQYALSRL 281 (281)
T ss_pred HHHHHHhChHhcCccCCCccccCCCCccccccccccCCCCccceeeccCCCCCHHHHHHHHHHHHHhC
Confidence 876431 10 113567999999999999999987653
No 37
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=98.03 E-value=7.7e-05 Score=54.64 Aligned_cols=94 Identities=16% Similarity=0.205 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhhcC
Q 030618 19 ENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQRD 98 (174)
Q Consensus 19 ~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~~ 98 (174)
+.++-+++.+++ .|++|+++.+|. +.. +.. ......+..+.|.+.++.+|+++|+.++|+.+.=
T Consensus 36 ~Dl~l~L~~~k~--~g~~~lfVi~Pv-Ng~-wyd--------ytG~~~~~r~~~y~kI~~~~~~~gf~v~D~s~~~---- 99 (130)
T PF04914_consen 36 DDLQLLLDVCKE--LGIDVLFVIQPV-NGK-WYD--------YTGLSKEMRQEYYKKIKYQLKSQGFNVADFSDDE---- 99 (130)
T ss_dssp HHHHHHHHHHHH--TT-EEEEEE-----HH-HHH--------HTT--HHHHHHHHHHHHHHHHTTT--EEE-TTGT----
T ss_pred HHHHHHHHHHHH--cCCceEEEecCC-cHH-HHH--------HhCCCHHHHHHHHHHHHHHHHHCCCEEEecccCC----
Confidence 468999999999 689999998864 322 221 1123456677899999999999999999987532
Q ss_pred CcccccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 99 DWLTTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 99 ~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
....++.|-+||...|=-.+-+.|.+.+.+
T Consensus 100 -y~~yfm~D~iHlgw~GWv~vd~~i~~f~~~ 129 (130)
T PF04914_consen 100 -YEPYFMQDTIHLGWKGWVYVDQAIYPFYKE 129 (130)
T ss_dssp -TSTTSBSSSSSB-THHHHHHHHHHHHHHHS
T ss_pred -CCCceeeecccCchhhHHHHHHHHHHHHhc
Confidence 223578999999999999999999998875
No 38
>cd01837 SGNH_plant_lipase_like SGNH_plant_lipase_like, a plant specific subfamily of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=98.01 E-value=4.1e-05 Score=63.53 Aligned_cols=109 Identities=17% Similarity=0.245 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhc-cccccccCCChHHHHHHHHHHHHHHHHc-------CCeE
Q 030618 16 EYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHL-STDFAVWGRTNESCRIYSEACLKLCQEM-------DVKA 87 (174)
Q Consensus 16 ~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~-~~~~~~~~~~n~~i~~y~~~i~~lA~~~-------~v~~ 87 (174)
....++...|+++.+. ..-+|++.+.||+.......... ....+.....|.....||+.+++..++. .+.+
T Consensus 161 ~~v~~i~~~v~~L~~~-GAr~~~v~~lpplgc~P~~~~~~~~~~~~c~~~~n~~~~~~N~~L~~~l~~l~~~~~~~~i~~ 239 (315)
T cd01837 161 FLVSNISSAIKRLYDL-GARKFVVPGLGPLGCLPSQRTLFGGDGGGCLEELNELARLFNAKLKKLLAELRRELPGAKFVY 239 (315)
T ss_pred HHHHHHHHHHHHHHhC-CCcEEEecCCCCcCccHHHHhhcCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3345555566666653 23468888888877654322111 0112345567888889998888877653 4677
Q ss_pred EechHHHhhc----C--C------------------------------cccccccCCCCCChHHHHHHHHHHHH
Q 030618 88 IDLWTAMQQR----D--D------------------------------WLTTCFMDGIHFSSEGSKIVVKEILK 125 (174)
Q Consensus 88 iDl~~~~~~~----~--~------------------------------~~~~~~~DGvHpn~~Gy~~~a~~l~~ 125 (174)
+|+|..+.+. . + ..+.++.|++|||+++|++||+.++.
T Consensus 240 ~D~y~~~~~i~~np~~yGf~~~~~aCc~~g~~~~~~~c~~~~~~~C~~p~~y~fwD~~HpT~~~~~~ia~~~~~ 313 (315)
T cd01837 240 ADIYNALLDLIQNPAKYGFENTLKACCGTGGPEGGLLCNPCGSTVCPDPSKYVFWDGVHPTEAANRIIADALLS 313 (315)
T ss_pred EehhHHHHHHHhChhhcCCcCCCcCccCCCCCCcccccCCCCCCcCCCccceEEeCCCChHHHHHHHHHHHHhc
Confidence 8999876432 0 0 01225689999999999999998864
No 39
>PLN03156 GDSL esterase/lipase; Provisional
Probab=97.93 E-value=0.00012 Score=61.99 Aligned_cols=118 Identities=14% Similarity=0.220 Sum_probs=76.6
Q ss_pred CChHHHHHHH----HHHHHHHHhhCCCceEEEEcCCCCChhhhhhh-hccccccccCCChHHHHHHHHHHHHHHHHc---
Q 030618 12 VPLPEYIENM----RKIALHLKSLSAKTRIIFLSAPPINKQQIFES-HLSTDFAVWGRTNESCRIYSEACLKLCQEM--- 83 (174)
Q Consensus 12 v~l~~y~~nl----~~iI~~ir~~~~~~~IILitppp~~~~~~~~~-~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~--- 83 (174)
.++++|...+ ...|+.+-.. ..-++++++.||+........ ......++....|.....||+.+++..++.
T Consensus 184 ~~~~~~~~~lv~~~~~~i~~Ly~~-GAR~~~V~~lpplGc~P~~~~~~~~~~~~C~~~~n~~~~~~N~~L~~~l~~L~~~ 262 (351)
T PLN03156 184 YTVSQYQDFLIGIAENFVKKLYRL-GARKISLGGLPPMGCLPLERTTNLMGGSECVEEYNDVALEFNGKLEKLVTKLNKE 262 (351)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHc-CCCEEEecCCCccccCHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456664444 3445556553 344688888888865443210 001112345567788889998888877642
Q ss_pred ----CCeEEechHHHhhc----C--Cc------------------------------ccccccCCCCCChHHHHHHHHHH
Q 030618 84 ----DVKAIDLWTAMQQR----D--DW------------------------------LTTCFMDGIHFSSEGSKIVVKEI 123 (174)
Q Consensus 84 ----~v~~iDl~~~~~~~----~--~~------------------------------~~~~~~DGvHpn~~Gy~~~a~~l 123 (174)
.+.++|.|..+.+. . +. .+.+..|++|||+++|+++|+.+
T Consensus 263 ~pg~~i~~~D~y~~~~~ii~nP~~yGf~~~~~aCCg~g~~~~~~~C~~~~~~~C~~p~~yvfWD~~HPTe~a~~~iA~~~ 342 (351)
T PLN03156 263 LPGIKLVFSNPYDIFMQIIRNPSAYGFEVTSVACCATGMFEMGYLCNRNNPFTCSDADKYVFWDSFHPTEKTNQIIANHV 342 (351)
T ss_pred CCCCeEEEEehHHHHHHHHhCccccCcccCCccccCCCCCCCccccCCCCCCccCCccceEEecCCCchHHHHHHHHHHH
Confidence 46788999988542 0 10 12356899999999999999999
Q ss_pred HHHHHhc
Q 030618 124 LKVLREA 130 (174)
Q Consensus 124 ~~~l~~~ 130 (174)
+..|..+
T Consensus 343 ~~~l~~~ 349 (351)
T PLN03156 343 VKTLLSK 349 (351)
T ss_pred HHHHHHh
Confidence 9998764
No 40
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised. They have been named GSCFA after a highly conserved N-terminal motif in the alignment, they are functionally uncharacterised.
Probab=97.86 E-value=0.00014 Score=59.04 Aligned_cols=103 Identities=16% Similarity=0.139 Sum_probs=68.2
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHH-HHHHHHHHHHHHHHc-CCeEEe
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNES-CRIYSEACLKLCQEM-DVKAID 89 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~-i~~y~~~i~~lA~~~-~v~~iD 89 (174)
.+.++..+.++.+++.+++.+|+++||+.- +|+.-.. ...+. ..-..|.. -...+.++.++++.+ ++.|++
T Consensus 145 ls~~ei~~~l~~~~~~l~~~nP~~kiilTV-SPVrl~~----T~~~~--d~~~an~~SKs~Lr~a~~~l~~~~~~v~YFP 217 (251)
T PF08885_consen 145 LSVEEILEDLEAIIDLLRSINPDIKIILTV-SPVRLIA----TFRDR--DGLVANQYSKSTLRAAAHELVRAFDDVDYFP 217 (251)
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCceEEEEe-ccchhhc----ccccc--cchhhhhhhHHHHHHHHHHHHhcCCCceEcc
Confidence 889999999999999999999999998833 3332111 00000 00111221 123556666777665 799999
Q ss_pred chHHHhhcCCcccccccCCCCCChHHHHHHHH
Q 030618 90 LWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVK 121 (174)
Q Consensus 90 l~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~ 121 (174)
-|+.+.+......-|..|.+|||+.|-..+-+
T Consensus 218 SYEiv~d~lrdyrfy~~D~~Hps~~aV~~I~~ 249 (251)
T PF08885_consen 218 SYEIVMDELRDYRFYAEDMRHPSPQAVDYIWE 249 (251)
T ss_pred hHhhccCcccccccccccCCCCCHHHHHHHHh
Confidence 99999865322224789999999998766543
No 41
>PRK15381 pathogenicity island 2 effector protein SseJ; Provisional
Probab=97.71 E-value=0.00025 Score=61.26 Aligned_cols=107 Identities=8% Similarity=0.021 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc-------CCeEEec
Q 030618 18 IENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM-------DVKAIDL 90 (174)
Q Consensus 18 ~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~-------~v~~iDl 90 (174)
...+...|+++... ..-+|++.+.||+......... ......|.....||+.+++..++. .+.++|+
T Consensus 260 V~~~~~~l~~Ly~l-GARk~vV~nlpPlGC~P~~~~~-----~~~~~~N~~a~~fN~~L~~~L~~L~~~~pg~~ivy~D~ 333 (408)
T PRK15381 260 VEQQIDDIEKIISG-GVNNVLVMGIPDLSLTPYGKHS-----DEKRKLKDESIAHNALLKTNVEELKEKYPQHKICYYET 333 (408)
T ss_pred HHHHHHHHHHHHHc-CCcEEEEeCCCCCCCcchhhcc-----CchHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEEEEEh
Confidence 34444444555553 3446888888887764432100 011345666777887777776543 4678899
Q ss_pred hHHHhhcC------Cc-------------------------ccccccCCCCCChHHHHHHHHHHHHHHHhc
Q 030618 91 WTAMQQRD------DW-------------------------LTTCFMDGIHFSSEGSKIVVKEILKVLREA 130 (174)
Q Consensus 91 ~~~~~~~~------~~-------------------------~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~ 130 (174)
|+.+.+.- ++ .+.++.|++|||+++|+++|+.+.+.|.++
T Consensus 334 y~~~~~ii~nP~~yGF~~~~~cCg~G~~~~~~~C~p~~~~C~~YvFWD~vHPTe~ah~iiA~~~~~~i~~~ 404 (408)
T PRK15381 334 ADAFKVIMEAASNIGYDTENPYTHHGYVHVPGAKDPQLDICPQYVFNDLVHPTQEVHHCFAIMLESFIAHH 404 (408)
T ss_pred HHHHHHHHhCHHhcCCCccccccCCCccCCccccCcccCCCCceEecCCCCChHHHHHHHHHHHHHHHHHh
Confidence 99875421 11 112568999999999999999999999875
No 42
>PF13839 PC-Esterase: GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p
Probab=97.24 E-value=0.0054 Score=48.80 Aligned_cols=119 Identities=18% Similarity=0.163 Sum_probs=78.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhC----CCceEEEEcCCCCChhhhhhhhccc--cccccCCChHHHHHHHHHHHHHH-H
Q 030618 9 GPHVPLPEYIENMRKIALHLKSLS----AKTRIIFLSAPPINKQQIFESHLST--DFAVWGRTNESCRIYSEACLKLC-Q 81 (174)
Q Consensus 9 ~~~v~l~~y~~nl~~iI~~ir~~~----~~~~IILitppp~~~~~~~~~~~~~--~~~~~~~~n~~i~~y~~~i~~lA-~ 81 (174)
.....++.|..+++.+++.++... ++.+|++.+.+|...........+. ........+..+..+++++.++. .
T Consensus 125 ~~~~~~~~y~~~l~~~~~~~~~~~~~~~~~~~v~~r~~~P~h~~~~~~~~gg~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (263)
T PF13839_consen 125 KEINPLEAYRNRLRTLADWVRRLLDRSKPPTRVFWRTTSPVHFEGGDWNSGGSCNPPRREEITNEQIDELNEALREALKK 204 (263)
T ss_pred cCcchHHHHHHHHHHHHHHHHhhhccccccceEEEEecCCccccccccccCCCcCcccccCCCHHHHHHHHHHHHHHhhc
Confidence 344578999999999999888643 4478888877776654321000000 00112345777889999999887 7
Q ss_pred HcCCeEEechHHHhhc-C-C-----c---ccccccCCCC-CChHHHHHHHHHHHHHH
Q 030618 82 EMDVKAIDLWTAMQQR-D-D-----W---LTTCFMDGIH-FSSEGSKIVVKEILKVL 127 (174)
Q Consensus 82 ~~~v~~iDl~~~~~~~-~-~-----~---~~~~~~DGvH-pn~~Gy~~~a~~l~~~l 127 (174)
..++.++|+++.+... . + + ...-..||+| ..+..+....+.|+..+
T Consensus 205 ~~~~~~ldi~~~~~~~r~~d~H~~~~~~~~~~~~~Dc~Hw~~p~v~d~~~~lL~~~l 261 (263)
T PF13839_consen 205 NSRVHLLDIFTMLSSFRPDDAHPGIYRNQWPRQPQDCLHWCLPGVIDTWNELLLNLL 261 (263)
T ss_pred CCCceeeeecchhhhccccccCcccccCCCCCCCCCCcCcCCCcHHHHHHHHHHHHh
Confidence 7799999996554432 2 1 0 0111589999 77777888888777654
No 43
>COG3240 Phospholipase/lecithinase/hemolysin [Lipid metabolism / General function prediction only]
Probab=97.11 E-value=0.003 Score=53.55 Aligned_cols=103 Identities=14% Similarity=0.218 Sum_probs=69.0
Q ss_pred HHHHHHHHHHhhCCCce-EEEEcCCCCChhhhhhhhccccccccC-CChHHHHHHHHHHHHHHHHcC--CeEEechHHHh
Q 030618 20 NMRKIALHLKSLSAKTR-IIFLSAPPINKQQIFESHLSTDFAVWG-RTNESCRIYSEACLKLCQEMD--VKAIDLWTAMQ 95 (174)
Q Consensus 20 nl~~iI~~ir~~~~~~~-IILitppp~~~~~~~~~~~~~~~~~~~-~~n~~i~~y~~~i~~lA~~~~--v~~iDl~~~~~ 95 (174)
++...|+.+.+ .|++ |++++.|...-...... . +... ...+....||..++.-.++.+ |..||.+..++
T Consensus 195 ~~~~~Vq~L~~--AGA~~i~v~~lpDl~l~P~~~~---~--~~~~~~a~~~t~~~Na~L~~~L~~~g~nIi~iD~~~llk 267 (370)
T COG3240 195 DQSSAVQRLIA--AGARNILVMTLPDLSLTPAGKA---Y--GTEAIQASQATIAFNASLTSQLEQLGGNIIRIDTYTLLK 267 (370)
T ss_pred HHHHHHHHHHH--hhccEEEEeecccccccccccc---c--cchHHHHHHHHHHHHHHHHHHHHHhcCcEEEeEhHHHHH
Confidence 57777777777 4565 55566665543322110 0 0011 334556778888888888886 88889988776
Q ss_pred hcC------Cc----------------------------ccccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 96 QRD------DW----------------------------LTTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 96 ~~~------~~----------------------------~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
... ++ .+.++.|.+|||.+||++||+.|+..+..
T Consensus 268 ~im~nPa~fGlant~~~~c~~~~~~~~~~a~~p~~~~~~~~ylFaD~vHPTt~~H~liAeyila~l~a 335 (370)
T COG3240 268 EIMTNPAEFGLANTTAPACDATVSNPACSASLPALCAAPQKYLFADSVHPTTAVHHLIAEYILARLAA 335 (370)
T ss_pred HHHhCHHhcCcccCCCcccCcccCCcccccccccccCCccceeeecccCCchHHHHHHHHHHHHHHhC
Confidence 431 10 12578999999999999999999988865
No 44
>PF07611 DUF1574: Protein of unknown function (DUF1574); InterPro: IPR011468 This is a family of hypothetical proteins found in Leptospira interrogans and other bacteria.
Probab=96.71 E-value=0.0061 Score=51.58 Aligned_cols=93 Identities=12% Similarity=0.088 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhhc
Q 030618 18 IENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQR 97 (174)
Q Consensus 18 ~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~ 97 (174)
..-++++++.+++ .|++++++.|.....-... .+.....+.+...+++++++.|+.++|+.+.
T Consensus 251 ~~F~e~~L~~ake--~~I~~vl~~P~V~~~~~~~-----------~~~~~~~~~w~~~i~~l~~~~~~~~~dmn~d---- 313 (345)
T PF07611_consen 251 FFFLEKFLKLAKE--NGIPVVLWWPKVSPPYEKL-----------YKELKVYESWWPIIKKLAKEYGIPFLDMNED---- 313 (345)
T ss_pred HHHHHHHHHHHHH--cCCcEEEEEeccCHHHHHH-----------HHhhchhhHHHHHHHHHHhcCCceEecccCC----
Confidence 3567899999999 7899999998765332111 1223335678889999999999999998762
Q ss_pred CCcccccccCCCCCChHHHHHHHHHHHHHH
Q 030618 98 DDWLTTCFMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 98 ~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
..+......|+-|++..=|..+++.|++.+
T Consensus 314 ~~~~C~~F~D~~HlS~~Cy~e~~~~l~~~~ 343 (345)
T PF07611_consen 314 PSYKCDDFSDASHLSPDCYPELMDILFKRY 343 (345)
T ss_pred CCcchhhccCccccCcccchHHHHHHHHhc
Confidence 123345689999999999999999888764
No 45
>PF04311 DUF459: Protein of unknown function (DUF459); InterPro: IPR007407 This is a putative periplasmic protein.
Probab=96.47 E-value=0.0027 Score=53.32 Aligned_cols=94 Identities=16% Similarity=0.291 Sum_probs=66.3
Q ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEcCC-CCChhhhhhhhccccccccCCChHHHHHHHHH-HHHHHHHcCCeEEech
Q 030618 14 LPEYIENMRKIALHLKSLSAKTRIIFLSAP-PINKQQIFESHLSTDFAVWGRTNESCRIYSEA-CLKLCQEMDVKAIDLW 91 (174)
Q Consensus 14 l~~y~~nl~~iI~~ir~~~~~~~IILitpp-p~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~-i~~lA~~~~v~~iDl~ 91 (174)
++.|.++ +...+++ .+.++++++.| ++.... ........|+. +++.|...|..|+|+|
T Consensus 132 ~~~Y~~r---~~~~i~~--~~vp~~wvglPd~~~~~~---------------~~~d~l~~n~~~yr~~a~~~g~~fvDiw 191 (327)
T PF04311_consen 132 LEEYGKR---IAKVIRE--LKVPSIWVGLPDYFRWPK---------------MSADMLALNDILYRDAAEKAGGGFVDIW 191 (327)
T ss_pred HHHHHHH---HHHHHHh--cCCCeEEEeCCcccCChh---------------hhHHHHHhcchhHHHHHHHhcCcccccc
Confidence 4566666 5555666 46889999988 665433 23444557777 7888899999999999
Q ss_pred HHHhhcCC---------c---ccccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 92 TAMQQRDD---------W---LTTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 92 ~~~~~~~~---------~---~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
+ |.+..+ + ..+-..||||+|.+ ++.++-.+-.-+.+
T Consensus 192 d-F~De~G~~~~~Gpd~~gq~~rlR~~dgl~ft~A-~rkla~~ve~pi~r 239 (327)
T PF04311_consen 192 D-FVDENGRYLAFGPDEWGQIYRLRSNDGLNFTKA-KRKLAFYVEKPIMR 239 (327)
T ss_pred c-cccCCCCcccCCCCccchHhhhhhhcceeeeec-ccceEEEechHhhh
Confidence 9 877542 1 13567999999999 88876655554444
No 46
>KOG3670 consensus Phospholipase [Lipid transport and metabolism]
Probab=96.15 E-value=0.18 Score=43.24 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=73.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhcccc-------ccc---------cCCChHHHHHHHH
Q 030618 11 HVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTD-------FAV---------WGRTNESCRIYSE 74 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~-------~~~---------~~~~n~~i~~y~~ 74 (174)
..+.+.|.+++++-++.++...|.+-|.|+.++.+ . .+........ ... .+........|++
T Consensus 208 ~~~~~~~~~~i~~Al~~L~~nvPR~iV~lvg~~~~-~-~l~q~~~~~~~c~~~~~~ec~c~~~~~~~~~~~~~~~~~~~~ 285 (397)
T KOG3670|consen 208 PSPVDQHKRNIRKALEILRDNVPRTIVSLVGMFNV-S-LLRQASKLLKFCKRLHRFECPCLLNKNFELADIEGFCYDYQN 285 (397)
T ss_pred CCchhHHHHHHHHHHHHHHhcCCceEEEEecCCCH-H-HHHHhhcccccccccccccCccccccccchhHHHHHHHHHHH
Confidence 46788999999999999999888888888888877 2 2221100000 001 1111244556777
Q ss_pred HHHHHHHHcCCe-------EEechHHHhhc----CC-cccccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 75 ACLKLCQEMDVK-------AIDLWTAMQQR----DD-WLTTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 75 ~i~~lA~~~~v~-------~iDl~~~~~~~----~~-~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
.-.++....... +-.+.+..... +. -...+..|..|+|..||.++|..+...|-+
T Consensus 286 ~~~~i~~~~~f~~~dFtvvvqPf~~~~t~P~l~~g~~d~~ffa~DcfHlS~~GHa~~ak~lWNnl~e 352 (397)
T KOG3670|consen 286 KEFEIQNNGRFDREDFTVVVQPFFTDITIPPLPHGRYDLTFFAPDCFHLSQRGHAIAAKHLWNNLFE 352 (397)
T ss_pred HHHHHHhcccccccceeEEeeccccccCCCcCCCCCCCchhcccCccccchHHHHHHHHHHHHHhhc
Confidence 666666655333 22222211110 11 123678999999999999999999998876
No 47
>PF03629 DUF303: Domain of unknown function (DUF303) ; InterPro: IPR005181 This domain is associated with proteins from viruses, bacteria and eukaryotes. In the latter two taxonomic groups some of the proteins are annotated as either sialic acid-specific 9-O-acetylesterase (3.1.1.53 from EC) or acetylxylan esterase related enzyme. The function of this domain is unknown.; PDB: 3PT5_A 2APJ_C 1ZMB_D.
Probab=95.60 E-value=0.19 Score=40.33 Aligned_cols=92 Identities=12% Similarity=0.088 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHHHhhC--CCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc-CCeEEechH
Q 030618 16 EYIENMRKIALHLKSLS--AKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM-DVKAIDLWT 92 (174)
Q Consensus 16 ~y~~nl~~iI~~ir~~~--~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~-~v~~iDl~~ 92 (174)
.|.+++..||+.+|+.. ++.+++++..++........ ...+..-...+++.+++|++. ++.+++.-+
T Consensus 160 ~Y~~~l~~li~~~R~~~~~~~lPf~~~ql~~~~~~~~~~----------~~~~~~~~~vr~aQ~~~~~~~~~~~~v~t~d 229 (255)
T PF03629_consen 160 AYRELLKALIEDWRADWGDPDLPFVIGQLSPYNGTNNEP----------AGINEGWAEVREAQRRVAEEDPNTGMVSTSD 229 (255)
T ss_dssp CHHHHHHHHHHHHHHHTT-TTS-EEEEE-SCCCTTCGHH----------CCT-TTHHHHHHHHHHHHHHSTTEEEEE-TT
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCEEEEEeCCcccCCCCc----------ccccccHHHHHHHHHHHHhhCCCEEEEEccC
Confidence 89999999999999976 67888888877654322110 001223446788888888665 677775433
Q ss_pred HHhhcCCcccccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 93 AMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 93 ~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
..|..|++++|++.+++.++....+
T Consensus 230 ------------~~~~~~i~~~~~~~~G~R~a~~al~ 254 (255)
T PF03629_consen 230 ------------LGDPDDIHPAGKRELGERLAEAALR 254 (255)
T ss_dssp -------------B-TTSS-HHHHHHHHHHHHHHHHH
T ss_pred ------------CCCCCCcCHHHHHHHHHHHHHHhhh
Confidence 3677888999999999999988765
No 48
>PF05141 DIT1_PvcA: Pyoverdine/dityrosine biosynthesis protein; InterPro: IPR007817 This entry is found in DIT1, a protein is involved in the synthesis of dityrosine []. Dityrosine is a sporulation-specific component of the Saccharomyces cerevisiae ascospore wall that is essential for the resistance of the spores to adverse environmental conditions. Q9I1L5 from SWISSPROT is involved in the biosynthesis of pyoverdine [].; PDB: 3E59_C.
Probab=89.87 E-value=3.2 Score=34.28 Aligned_cols=67 Identities=15% Similarity=0.244 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHHHHhhC-CCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcC---CeEEec
Q 030618 15 PEYIENMRKIALHLKSLS-AKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMD---VKAIDL 90 (174)
Q Consensus 15 ~~y~~nl~~iI~~ir~~~-~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~---v~~iDl 90 (174)
+--.++|..|.+.|++.+ ||+++.|++= ...+.. .+....+.+..|.+.+++++++.+ +.|+++
T Consensus 39 elaL~~L~~lc~~I~~vY~PGa~v~I~SD----G~Vf~D--------llgV~D~~v~~Y~~~Lr~l~~~~~~~~I~f~~l 106 (278)
T PF05141_consen 39 ELALRRLNGLCQAIEAVYPPGAKVTIISD----GHVFND--------LLGVPDEEVWAYGEALRELAEEKGLDHIKFFRL 106 (278)
T ss_dssp HHHHHHHHHHHHHHHHHSTT-EEEEEE------HHHHGG--------GTT--HHHHHHHHHHHHHHHHHCT-TTEEEE-G
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEec----CcEecc--------ccCCCHHHHHHHHHHHHHHHHhcCCCeEEEeCH
Confidence 445567778888888765 9999999864 222221 123456778899999999999997 666666
Q ss_pred hHH
Q 030618 91 WTA 93 (174)
Q Consensus 91 ~~~ 93 (174)
.+.
T Consensus 107 ~dl 109 (278)
T PF05141_consen 107 EDL 109 (278)
T ss_dssp GG-
T ss_pred HHh
Confidence 655
No 49
>PF14286 DHHW: DHHW protein
Probab=89.72 E-value=2.4 Score=36.48 Aligned_cols=44 Identities=20% Similarity=0.411 Sum_probs=33.2
Q ss_pred CCeEEechHHHhhcCCcccccc-cCCCCCChHHHHHHHHHHHHHHHh
Q 030618 84 DVKAIDLWTAMQQRDDWLTTCF-MDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 84 ~v~~iDl~~~~~~~~~~~~~~~-~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
+|.+||+++.|..... ...++ .| =|+|..|.-.-++.+++.+.-
T Consensus 211 ~I~~ID~~~~L~~hk~-E~iYyrTD-HHWt~~GAyyay~~~~~~~g~ 255 (378)
T PF14286_consen 211 NIKFIDVYDTLKKHKD-EYIYYRTD-HHWTTLGAYYAYQEFAKSMGI 255 (378)
T ss_pred CceEEehHHHHhhccc-cceEeecc-CCcccchHHHHHHHHHHHcCC
Confidence 7999999999987542 22344 55 499999988888888877643
No 50
>TIGR02171 Fb_sc_TIGR02171 Fibrobacter succinogenes paralogous family TIGR02171. This model describes a paralogous family of the rumen bacterium Fibrobacter succinogenes. Eleven members are found in Fibrobacter succinogenes S85, averaging over 900 amino acids in length. More than half are predicted lipoproteins. The function is unknown.
Probab=83.53 E-value=17 Score=34.81 Aligned_cols=104 Identities=13% Similarity=0.137 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc-CCeEEechHHHh
Q 030618 17 YIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM-DVKAIDLWTAMQ 95 (174)
Q Consensus 17 y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~-~v~~iDl~~~~~ 95 (174)
-...|+.||+..++ .+++||-+..|.... ++. .+.++.+.-....-...-+.++++.+++ ++.++|=++ +.
T Consensus 806 ~~~~l~~~i~~~~~--~~~~~ig~~~p~~p~--y~~---t~~fg~~g~~rs~a~~~~~~~~~~~~~y~~f~~~denk-~g 877 (912)
T TIGR02171 806 NMNSLKAFIDETAK--KGVKVIGTIFPQSPG--YKN---TGSFGRYGPRRSIAKKIIDSFKKMEKTYPHFILFDENK-DG 877 (912)
T ss_pred HHHHHHHHHHHHHh--CCCEEEEEECCCCCC--ccc---cCcccccCcchhhHHHHHHHHHHHHhhCCceEEEecCc-CC
Confidence 35556677777777 678888766554332 221 1222333333344456667777888887 788888654 22
Q ss_pred hcCCcccccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 96 QRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 96 ~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
. -++...|.-|.=|++..|...+...|-..|++
T Consensus 878 ~-hdy~~~ma~~~dhl~~~ga~~~t~rldsll~~ 910 (912)
T TIGR02171 878 L-HDYTDDMANNSDHLSDEGAKQFTYRLDSLLKK 910 (912)
T ss_pred c-ccccccccccccccchhhHHHHHHHHHHHHhc
Confidence 1 12345688999999999999999998887776
No 51
>COG3966 DltD Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=82.77 E-value=13 Score=31.96 Aligned_cols=95 Identities=16% Similarity=0.218 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCe-EEechHHHhhc
Q 030618 19 ENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVK-AIDLWTAMQQR 97 (174)
Q Consensus 19 ~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~-~iDl~~~~~~~ 97 (174)
+.++-|++..+. .++.||.+++|.- . .|. .......+..+.|-+-++.--+..|.. +-|+-+.
T Consensus 295 ~Dlqlll~~f~k--agadv~FV~~PvN-g-kW~--------dYtG~~k~~~q~~y~Kik~Ql~sqGF~~iaDfs~~---- 358 (415)
T COG3966 295 QDLQLLLDTFKK--AGADVIFVIIPVN-G-KWY--------DYTGLNKDGRQAYYKKIKSQLRSQGFTQIADFSDD---- 358 (415)
T ss_pred ccHHHHHHHHHh--cCCCeEEEecCCC-C-cee--------cccCcCHHHHHHHHHHHHHHHHHcCceeehhhhcc----
Confidence 357889999998 6799999988742 1 111 112223344556666666666777884 4465432
Q ss_pred CCcccccccCCCCCChHHHHHHHHHHHHHHHhc
Q 030618 98 DDWLTTCFMDGIHFSSEGSKIVVKEILKVLREA 130 (174)
Q Consensus 98 ~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~ 130 (174)
+....+..|-||+.=.|--.+=++|.+.++..
T Consensus 359 -~~epyfm~DtIHlGWkGWv~~Dkai~~F~ktp 390 (415)
T COG3966 359 -GYEPYFMKDTIHLGWKGWVAFDKAIAKFMKTP 390 (415)
T ss_pred -CCCcceeccceeecchhHHHHHHHHHHHhcCC
Confidence 12345789999999999999999999999874
No 52
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=81.50 E-value=5 Score=30.46 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeEE--echHHHhhcCCcccccccCCCCCChHH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAI--DLWTAMQQRDDWLTTCFMDGIHFSSEG 115 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~i--Dl~~~~~~~~~~~~~~~~DGvHpn~~G 115 (174)
..+.+..+.+.++|+++++.++ |-.+... .+..||||++...
T Consensus 39 ~~~~~~a~~l~~~~~~~~~~liin~~~~la~-------~~~~dGvHl~~~~ 82 (180)
T PF02581_consen 39 EELLELARRLAELCQKYGVPLIINDRVDLAL-------ELGADGVHLGQSD 82 (180)
T ss_dssp HHHHHHHHHHHHHHHHTTGCEEEES-HHHHH-------HCT-SEEEEBTTS
T ss_pred cHHHHHHHHHHHHhhcceEEEEecCCHHHHH-------hcCCCEEEecccc
Confidence 3445677888899999987776 4333332 3568999998754
No 53
>PRK12465 xylose isomerase; Provisional
Probab=78.38 E-value=15 Score=32.12 Aligned_cols=74 Identities=11% Similarity=0.172 Sum_probs=48.8
Q ss_pred CCChHHHHHHHHHHHHHHHhhC--CCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHH----HHHHHHHHHcC
Q 030618 11 HVPLPEYIENMRKIALHLKSLS--AKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYS----EACLKLCQEMD 84 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~--~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~----~~i~~lA~~~~ 84 (174)
+-++.++.+|+.+|++.++++. .|.+++++|+-.+....+.. |.....+..+.+|+ ....++|++.|
T Consensus 117 g~s~~E~~~nld~iv~~~k~~~~~tGikllw~TaNlFs~prf~~-------GA~TnPD~~Vra~A~~qvk~alD~~~eLG 189 (445)
T PRK12465 117 ADDIGEYESNLKHMVGIAKQRQADTGIKLLWGTANLFSHPRYMN-------GASTNPDFNVVARAAVQVKAAIDATVELG 189 (445)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhhCceeeeeccccccCccccC-------CcCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 4568899999999999998853 78999999987665444332 22333444455544 22335677777
Q ss_pred CeEEech
Q 030618 85 VKAIDLW 91 (174)
Q Consensus 85 v~~iDl~ 91 (174)
...+=+|
T Consensus 190 genyV~W 196 (445)
T PRK12465 190 GENYVFW 196 (445)
T ss_pred CCEEEEC
Confidence 7766665
No 54
>TIGR02630 xylose_isom_A xylose isomerase. Members of this family are the enzyme xylose isomerase (5.3.1.5), which interconverts D-xylose and D-xylulose.
Probab=78.30 E-value=16 Score=31.95 Aligned_cols=74 Identities=12% Similarity=0.231 Sum_probs=49.8
Q ss_pred CCChHHHHHHHHHHHHHHHhhC--CCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHH----HHHHHHHHHcC
Q 030618 11 HVPLPEYIENMRKIALHLKSLS--AKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYS----EACLKLCQEMD 84 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~--~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~----~~i~~lA~~~~ 84 (174)
+-++.++.+|+.+|++.++++. .|+++++.|.-.+....+.. |.....+..+.+|+ ....++|++.|
T Consensus 106 g~~~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~-------GA~TnPd~~Vra~A~~qvk~alD~~~eLG 178 (434)
T TIGR02630 106 GASLRETNANLDEIVDLIKEKQKETGVKLLWGTANLFSHPRYMH-------GAATSPDADVFAYAAAQVKKALEVTKKLG 178 (434)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCceeeeecCCccCCccccC-------CcCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 4568899999999999998863 78899999987665544332 23334455555555 23345677777
Q ss_pred CeEEech
Q 030618 85 VKAIDLW 91 (174)
Q Consensus 85 v~~iDl~ 91 (174)
...+=+|
T Consensus 179 genyV~W 185 (434)
T TIGR02630 179 GENYVFW 185 (434)
T ss_pred CCeEEEC
Confidence 6666555
No 55
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=78.22 E-value=11 Score=29.90 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCeEE--echHHHhhcCCcccccccCCCCCChH
Q 030618 70 RIYSEACLKLCQEMDVKAI--DLWTAMQQRDDWLTTCFMDGIHFSSE 114 (174)
Q Consensus 70 ~~y~~~i~~lA~~~~v~~i--Dl~~~~~~~~~~~~~~~~DGvHpn~~ 114 (174)
.+..+.++.+|++++++|| |-.+.-. ....||||....
T Consensus 51 ~~~a~~~~~lc~~~~v~liINd~~dlA~-------~~~AdGVHlGq~ 90 (211)
T COG0352 51 LALAEKLRALCQKYGVPLIINDRVDLAL-------AVGADGVHLGQD 90 (211)
T ss_pred HHHHHHHHHHHHHhCCeEEecCcHHHHH-------hCCCCEEEcCCc
Confidence 4577899999999999998 4333322 245899998776
No 56
>PRK06512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=78.16 E-value=8.7 Score=30.46 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEE-echHHHhhcCCcccccccCCCCCChH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAI-DLWTAMQQRDDWLTTCFMDGIHFSSE 114 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~i-Dl~~~~~~~~~~~~~~~~DGvHpn~~ 114 (174)
..+.+..+.++++|+++|+.+| |-+-.+.. .+-.||||+...
T Consensus 54 ~~~~~~a~~l~~l~~~~gv~liINd~~dlA~------~~~adGVHLg~~ 96 (221)
T PRK06512 54 ATFQKQAEKLVPVIQEAGAAALIAGDSRIAG------RVKADGLHIEGN 96 (221)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEeCHHHHHH------HhCCCEEEECcc
Confidence 3345677889999999999987 32212221 245799999865
No 57
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=78.05 E-value=12 Score=29.38 Aligned_cols=39 Identities=18% Similarity=0.308 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHcCCeEE--echHHHhhcCCcccccccCCCCCChH
Q 030618 69 CRIYSEACLKLCQEMDVKAI--DLWTAMQQRDDWLTTCFMDGIHFSSE 114 (174)
Q Consensus 69 i~~y~~~i~~lA~~~~v~~i--Dl~~~~~~~~~~~~~~~~DGvHpn~~ 114 (174)
..+....+.++|+++++.++ |-.+... .+-.||||+...
T Consensus 48 ~~~la~~l~~~~~~~~~~liInd~~~lA~-------~~~adGVHlg~~ 88 (211)
T PRK03512 48 VEADVVAAIALGRRYQARLFINDYWRLAI-------KHQAYGVHLGQE 88 (211)
T ss_pred HHHHHHHHHHHHHHhCCeEEEeCHHHHHH-------HcCCCEEEcChH
Confidence 34566778888999998887 4333222 356799999865
No 58
>PRK05474 xylose isomerase; Provisional
Probab=77.54 E-value=17 Score=31.91 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHHHHHHHHhhC--CCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHH----HHHHHHHHHcC
Q 030618 11 HVPLPEYIENMRKIALHLKSLS--AKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYS----EACLKLCQEMD 84 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~--~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~----~~i~~lA~~~~ 84 (174)
+-++.++.+|+.+|++.+++.. .|++++++|+--+....+.. |.+...+..+.+|+ +...++|++.|
T Consensus 107 g~s~~E~~~~l~~i~~~~k~~~~~tGikllw~TanlFs~prf~~-------GA~Tnpd~~Vra~A~~qvk~alD~~~eLG 179 (437)
T PRK05474 107 GASLKEYNANLDEIVDYLKEKQAETGVKLLWGTANLFSNPRYMA-------GAATNPDPDVFAYAAAQVKTALDATKRLG 179 (437)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhCCeeeeeccCccCCccccC-------CcCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 3578899999999999998853 78899999987665444332 23334455555555 23345677777
Q ss_pred CeEEech
Q 030618 85 VKAIDLW 91 (174)
Q Consensus 85 v~~iDl~ 91 (174)
...+=+|
T Consensus 180 ge~yV~W 186 (437)
T PRK05474 180 GENYVFW 186 (437)
T ss_pred CCeEEEC
Confidence 7666555
No 59
>PRK08999 hypothetical protein; Provisional
Probab=75.39 E-value=17 Score=29.83 Aligned_cols=85 Identities=15% Similarity=0.202 Sum_probs=47.2
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCCCCh-hhhh---hhhccc---ccc--ccCCChHHHHHHHHHHHHHHHHcCCeEE-ec
Q 030618 21 MRKIALHLKSLSAKTRIIFLSAPPINK-QQIF---ESHLST---DFA--VWGRTNESCRIYSEACLKLCQEMDVKAI-DL 90 (174)
Q Consensus 21 l~~iI~~ir~~~~~~~IILitppp~~~-~~~~---~~~~~~---~~~--~~~~~n~~i~~y~~~i~~lA~~~~v~~i-Dl 90 (174)
.+.+++.+.- ..++++|++..+. ..+. ..-+.. ... ........+....+.++++|+++++.+| +=
T Consensus 120 ~~~i~~~l~l----p~ly~it~~~~~~~~~~~~~~~~~l~~g~~~vqlR~k~~~~~~~~~~~~~l~~~~~~~~~~liind 195 (312)
T PRK08999 120 NQPIVRALRL----PDTYLITPEGEDGDAAFLARLERALAAGIRLIQLRAPQLPPAAYRALARAALGLCRRAGAQLLLNG 195 (312)
T ss_pred hHHHHHHhcC----CCEEEEECccccccHHHHHHHHHHHHCCCcEEEEeCCCCCHHHHHHHHHHHHHHHHHhCCEEEEEC
Confidence 4455655543 4788888876543 1111 000111 000 1122234456677889999999999886 32
Q ss_pred hHHHhhcCCcccccccCCCCCChHH
Q 030618 91 WTAMQQRDDWLTTCFMDGIHFSSEG 115 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~DGvHpn~~G 115 (174)
+-.+.. .+-.||||+...-
T Consensus 196 ~~~la~------~~~~~GvHl~~~d 214 (312)
T PRK08999 196 DPELAE------DLGADGVHLTSAQ 214 (312)
T ss_pred cHHHHH------hcCCCEEEcChhh
Confidence 322321 3568999999754
No 60
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=72.67 E-value=20 Score=30.51 Aligned_cols=40 Identities=20% Similarity=0.213 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHcCCeEE--echHHHhhcCCcccccccCCCCCChH
Q 030618 68 SCRIYSEACLKLCQEMDVKAI--DLWTAMQQRDDWLTTCFMDGIHFSSE 114 (174)
Q Consensus 68 ~i~~y~~~i~~lA~~~~v~~i--Dl~~~~~~~~~~~~~~~~DGvHpn~~ 114 (174)
........+.++|+++++.+| |-.+.-. .+-.||||+...
T Consensus 185 ~~~~~a~~L~~l~~~~~~~lIIND~vdlAl-------~~~aDGVHLgq~ 226 (347)
T PRK02615 185 QRLEEAKKLKELCHRYGALFIVNDRVDIAL-------AVDADGVHLGQE 226 (347)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEeChHHHHH-------HcCCCEEEeChh
Confidence 455677889999999998887 3333222 255799999764
No 61
>PF06935 DUF1284: Protein of unknown function (DUF1284); InterPro: IPR009702 This family consists of several hypothetical bacterial and archaeal proteins of around 130 residues in length. The function of this family is unknown, although it is thought that they may be iron-sulphur binding proteins.
Probab=71.21 E-value=7.7 Score=27.03 Aligned_cols=29 Identities=34% Similarity=0.606 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEcCCC
Q 030618 15 PEYIENMRKIALHLKSLSAKTRIIFLSAPP 44 (174)
Q Consensus 15 ~~y~~nl~~iI~~ir~~~~~~~IILitppp 44 (174)
+.|.+||.++++.+++. ++.+|-|+.-|.
T Consensus 4 ~~Fv~Nm~~Iv~~l~~~-~~~~I~iv~~~D 32 (103)
T PF06935_consen 4 PEFVENMKKIVERLRND-PGEPIEIVDGPD 32 (103)
T ss_pred HHHHHHHHHHHHHHHHC-CCCCEEEEECcC
Confidence 57999999999999863 788888888665
No 62
>TIGR01233 lacG 6-phospho-beta-galactosidase. This enzyme is part of the tagatose-6-phosphate pathway of galactose-6-phosphate degradation.
Probab=71.20 E-value=57 Score=28.88 Aligned_cols=80 Identities=11% Similarity=0.193 Sum_probs=51.0
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHH
Q 030618 2 LPHSTGLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQ 81 (174)
Q Consensus 2 ~~~~~~~~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~ 81 (174)
+|.|.+ .+ =++-.+.+++||+.+++ .|+++++ |....+-..+-. ..++| ...+.++.|.+..+.+.+
T Consensus 80 ~P~g~~---~~-N~~gl~~Y~~lid~l~~--~GI~P~V-TL~H~dlP~~L~-~~GGW-----~n~~~v~~F~~YA~~~f~ 146 (467)
T TIGR01233 80 FPTGYG---EV-NEKGVEFYHKLFAECHK--RHVEPFV-TLHHFDTPEALH-SNGDF-----LNRENIEHFIDYAAFCFE 146 (467)
T ss_pred cCCCCC---Cc-CHHHHHHHHHHHHHHHH--cCCEEEE-eccCCCCcHHHH-HcCCC-----CCHHHHHHHHHHHHHHHH
Confidence 576643 22 34556778999999999 6898877 444444333221 11222 234667788888888889
Q ss_pred HcCCeEEechHHHhh
Q 030618 82 EMDVKAIDLWTAMQQ 96 (174)
Q Consensus 82 ~~~v~~iDl~~~~~~ 96 (174)
++| . |+.|-.|.+
T Consensus 147 ~fg-d-Vk~WiT~NE 159 (467)
T TIGR01233 147 EFP-E-VNYWTTFNE 159 (467)
T ss_pred HhC-C-CCEEEEecc
Confidence 988 6 777755543
No 63
>PLN02923 xylose isomerase
Probab=70.97 E-value=52 Score=29.03 Aligned_cols=132 Identities=14% Similarity=0.150 Sum_probs=73.6
Q ss_pred CCChHHHHHHHHHHHHHHHhh--CCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHH----HHHHHHHcC
Q 030618 11 HVPLPEYIENMRKIALHLKSL--SAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEA----CLKLCQEMD 84 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~--~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~----i~~lA~~~~ 84 (174)
+-++.++.+|+.+|++.+++. ..|+++++.|.-.+...++.. |.....+..+.+|+.+ ..+++.+.|
T Consensus 151 g~sl~E~~~nld~ivd~~ke~~~~TGikllwgTaNlFshPrf~~-------GAaTspd~dV~ayAaaqvk~ald~t~eLG 223 (478)
T PLN02923 151 GKTLEESNANLDEVVALAKELQEGTKIRPLWGTAQLFKHPRYMH-------GAATSSEVGVYAYAAAQVKKAMEVTHYLG 223 (478)
T ss_pred CCCHHHHHhhHHHHHHHHHHHhHhhCceeeeeccccccCccccC-------CcCCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 457899999999999999885 378899999987665444332 2233445556666522 223455555
Q ss_pred CeEEechHHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCCcCCCCCCC
Q 030618 85 VKAIDLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLREADWEPSLHWRSLPTEFDEDSTYYPV 154 (174)
Q Consensus 85 v~~iDl~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~~~~p~l~~~~~~~~~~~~~~~~~~ 154 (174)
..-.=+|. ...+...++-.|-- .--+-...+-+.+.++.+++++...+.+++=|++ +-.++|.|+
T Consensus 224 genYVfWG---GREGyetllntD~k-~e~d~~a~fl~ma~dY~~~iGf~g~flIEPKP~E-PtkHqYd~d 288 (478)
T PLN02923 224 GENYVFWG---GREGYQTLLNTDME-RELDHLARFLEAAVAYKKKIGFNGTLLIEPKPQE-PTKHQYDWD 288 (478)
T ss_pred CCeEEecC---CccchhhhcccCHH-HHHHHHHHHHHHHHHHHHhcCCCceEEecCCCCC-CCCCccCcc
Confidence 44443332 22222223333311 1112344455666677788877666666544433 223445554
No 64
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=65.07 E-value=21 Score=28.44 Aligned_cols=29 Identities=17% Similarity=0.180 Sum_probs=23.6
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEechHH
Q 030618 65 TNESCRIYSEACLKLCQEMDVKAIDLWTA 93 (174)
Q Consensus 65 ~n~~i~~y~~~i~~lA~~~~v~~iDl~~~ 93 (174)
....+....+.++++|.++++++|=+...
T Consensus 151 ~~~~~~~i~~~Lk~lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 151 RRQEIGEISRELKALAKELNIPVIALSQL 179 (259)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSEEEEEEEB
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEEcccc
Confidence 34567788899999999999999976543
No 65
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=64.24 E-value=35 Score=25.84 Aligned_cols=39 Identities=23% Similarity=0.295 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHcCCeEE--echHHHhhcCCcccccccCCCCCChH
Q 030618 69 CRIYSEACLKLCQEMDVKAI--DLWTAMQQRDDWLTTCFMDGIHFSSE 114 (174)
Q Consensus 69 i~~y~~~i~~lA~~~~v~~i--Dl~~~~~~~~~~~~~~~~DGvHpn~~ 114 (174)
..+....++.+|++++++++ |-.+... .+..||||++..
T Consensus 42 ~~~~~~~l~~~~~~~~~~l~i~~~~~la~-------~~g~~GvHl~~~ 82 (196)
T TIGR00693 42 RLALAEKLQELCRRYGVPFIVNDRVDLAL-------ALGADGVHLGQD 82 (196)
T ss_pred HHHHHHHHHHHHHHhCCeEEEECHHHHHH-------HcCCCEEecCcc
Confidence 34566778888999988777 2222221 356899999865
No 66
>PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=61.53 E-value=38 Score=29.87 Aligned_cols=42 Identities=17% Similarity=0.281 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHcCCeEE--echHHHhhcCCcccccccCCCCCChHH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAI--DLWTAMQQRDDWLTTCFMDGIHFSSEG 115 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~i--Dl~~~~~~~~~~~~~~~~DGvHpn~~G 115 (174)
..+.+..+.++++|+++++.+| |-++... ..-.||||+..+-
T Consensus 244 ~el~~la~~l~~l~~~~gv~LiIND~~dlAl-------~~gAdGVHLGQeD 287 (437)
T PRK12290 244 ADLEQQIIRAIALGREYNAQVFINDYWQLAI-------KHQAYGVHLGQED 287 (437)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEECHHHHHH-------HcCCCEEEcChHH
Confidence 4455667788899999999887 4444332 2457999998753
No 67
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=58.72 E-value=44 Score=29.65 Aligned_cols=43 Identities=21% Similarity=0.454 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEE-echHHHhhcCCcccccccCCCCCChHH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAI-DLWTAMQQRDDWLTTCFMDGIHFSSEG 115 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~i-Dl~~~~~~~~~~~~~~~~DGvHpn~~G 115 (174)
..+.+..+.++++|+++++.++ +=+-.+.. .+-.||||+..+.
T Consensus 334 ~~~~~~a~~l~~~~~~~~~~liind~~~lA~------~~~adGvHl~~~d 377 (502)
T PLN02898 334 REFIEEAKACLAICRSYGVPLLINDRVDVAL------ACDADGVHLGQSD 377 (502)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEcChHHHHH------hcCCCEEEeChHh
Confidence 3455566778889999998776 32222221 2457999998764
No 68
>cd07182 RNaseH_typeII_bacteria_HII_like bacterial Ribonuclease HII-like. Bacterial ribonuclease (RNase) HII has a role in primer removal based on its involvement in ribonucleotide-specific catalytic activity in the presence of RNA/DNA hybrid substrates. RNase H is classified into two families, type I (prokaryotic RNase HI, eukaryotic RNase H1 and viral RNase H) and type II (prokaryotic RNase HII and HIII, and eukaryotic RNase H2). RNase H endonucleolytically hydrolyzes an RNA strand when it is annealed to a complementary DNA strand in the presence of divalent cations, in DNA replication and repair. Several bacteria, such as Bacillus subtilis, have two different type II RNases H, RNases HII and HIII- double deletion of these leads to cellular lethality. It appears that type I and type II RNases H also have overlapping functions in cells, as over-expression of Escherichia coli RNase HII can complement an RNase HI deletion phenotype in E. coli.
Probab=54.44 E-value=65 Score=24.62 Aligned_cols=93 Identities=14% Similarity=-0.046 Sum_probs=51.0
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhhcCC
Q 030618 20 NMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQRDD 99 (174)
Q Consensus 20 nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~~~ 99 (174)
..++|.+.+++..-...+..++|-.++.... .+.......+++.++...-...++|-+........
T Consensus 41 ~R~~l~~~I~~~~~~~~v~~~~~~~Id~~nl--------------~~~~~~a~~~ai~~l~~~~~~v~iD~~~~~~~~~~ 106 (179)
T cd07182 41 KREELYEEIKEKALAWGIGIASPEEIDRINI--------------LQATLLAMRRAVEGLPVKPDYVLVDGNRLPPLPIP 106 (179)
T ss_pred HHHHHHHHHHHhcccEEEEEECHHHHCHhhH--------------HHHHHHHHHHHHHhCCCCCCEEEECCcCCCCCCCC
Confidence 3456666666622235677777765543211 12223345555555533334567786543221111
Q ss_pred cccccccCCCCCChHHHHHHHHHHHHH
Q 030618 100 WLTTCFMDGIHFSSEGSKIVVKEILKV 126 (174)
Q Consensus 100 ~~~~~~~DGvHpn~~Gy~~~a~~l~~~ 126 (174)
.....-.|..|+.-++..++|+...+.
T Consensus 107 ~~~~~KaD~~~~~VaAASIvAKv~RD~ 133 (179)
T cd07182 107 QEAIVKGDAKSASIAAASILAKVTRDR 133 (179)
T ss_pred eEEEeccccccHHHHHHHHHHHHHHHH
Confidence 222346899999999999999444433
No 69
>COG1943 Transposase and inactivated derivatives [DNA replication, recombination, and repair]
Probab=52.83 E-value=17 Score=26.60 Aligned_cols=61 Identities=16% Similarity=0.256 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechHHHhhcCCcccccccCCCC------CChHHHHHHHHHHHHHHHhc-CCCCCCCcC
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWTAMQQRDDWLTTCFMDGIH------FSSEGSKIVVKEILKVLREA-DWEPSLHWR 139 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~~~~~~~~~~DGvH------pn~~Gy~~~a~~l~~~l~~~-~~~p~l~~~ 139 (174)
+....+.+.++++|+++++.++-+ ...+|.|| |...++.++-...-...+.. ..+|.+.|+
T Consensus 30 ~~~~~l~~~l~~~~~~~~~eI~a~------------~v~pdHVHlli~~pp~~~~~~~~~~lkg~ss~~~~~~~~~~~~~ 97 (136)
T COG1943 30 EVLNLLRSILREVAEQKNFEILAM------------EVMPDHVHLLITLPPKDSVSSIVNRLKGRSSRRLREKFPDLKWQ 97 (136)
T ss_pred hHHHHHHHHHHHHHHhCCCEEEEE------------EecCCEEEEEEecCCCCCHHHHHHHHHhHHHHHHHHhccchhhh
Confidence 367789999999999999998876 25678877 44556666654443332220 015777776
No 70
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=52.16 E-value=54 Score=22.91 Aligned_cols=64 Identities=3% Similarity=0.020 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc
Q 030618 19 ENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM 83 (174)
Q Consensus 19 ~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~ 83 (174)
.....+++.++..+.+.+|.+++-... .........+.-.+.+.......+-|+..+.+.+.+|
T Consensus 52 ~~~~~ll~~i~~~~~~iPVFl~~~~~~-~~~l~~~~l~~v~~~i~l~~~t~~fia~rI~~Aa~~Y 115 (115)
T PF03709_consen 52 DEAQELLDKIRERNFGIPVFLLAERDT-TEDLPAEVLGEVDGFIWLFEDTAEFIARRIEAAARRY 115 (115)
T ss_dssp HHHHHHHHHHHHHSTT-EEEEEESCCH-HHCCCHHHHCCESEEEETTTTTHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhCCCCCEEEEecCCC-cccCCHHHHhhccEEEEecCCCHHHHHHHHHHHHHhC
Confidence 456789999999989999999887541 1111111111112334444455566777777777664
No 71
>PHA02542 41 41 helicase; Provisional
Probab=49.73 E-value=85 Score=27.90 Aligned_cols=74 Identities=12% Similarity=0.035 Sum_probs=41.9
Q ss_pred CCCChHHHHHHHHHHHHHHHhh-CCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE
Q 030618 10 PHVPLPEYIENMRKIALHLKSL-SAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 10 ~~v~l~~y~~nl~~iI~~ir~~-~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i 88 (174)
..+++.+++..++++ +.. ..+..+|++-.+.+-...... .........+....+.++.+|++++|++|
T Consensus 280 ~~lt~~~ir~~~rrl----k~~~g~~~dlVvIDYLqL~~~~~~~-------~~~~nr~~ei~~Isr~LK~lAkel~vpVi 348 (473)
T PHA02542 280 GGAHAGHFRALLNEL----KLKKNFKPDVIIVDYLGICASSRLR-------VSSENSYTYVKAIAEELRGLAVEHDVVVW 348 (473)
T ss_pred CCCCHHHHHHHHHHH----HHhcCCCCCEEEEechhhccCCccc-------CCCCChHHHHHHHHHHHHHHHHHhCCeEE
Confidence 344455555444444 322 123677887765543211000 00112235577888999999999999999
Q ss_pred echHHH
Q 030618 89 DLWTAM 94 (174)
Q Consensus 89 Dl~~~~ 94 (174)
=+...-
T Consensus 349 ~lsQLn 354 (473)
T PHA02542 349 TAAQTT 354 (473)
T ss_pred EEEeeC
Confidence 775433
No 72
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=49.29 E-value=1.2e+02 Score=27.60 Aligned_cols=58 Identities=16% Similarity=0.154 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHcCCeEEechHHHhhcCCccccc---ccCCCCCCh-HHHHHHHHHHHHHHHh
Q 030618 71 IYSEACLKLCQEMDVKAIDLWTAMQQRDDWLTTC---FMDGIHFSS-EGSKIVVKEILKVLRE 129 (174)
Q Consensus 71 ~y~~~i~~lA~~~~v~~iDl~~~~~~~~~~~~~~---~~DGvHpn~-~Gy~~~a~~l~~~l~~ 129 (174)
+.-+.+.++|++++++++|--..+.+-++- ..+ ..|--|.|+ .|-++.++-+...|+.
T Consensus 212 rLIArV~aiAaR~dVp~vDPt~Lm~dwGQa-RaLe~~GlDltHYTP~Fa~~iv~~~fkg~in~ 273 (831)
T PRK15180 212 RLIKNVDTIAARMDIPCVNPTNLMEKWGQK-RALEKNGDDLTHYTDMFGDAIVAAIFKGVINN 273 (831)
T ss_pred HHHHHHHHHHhcCCCcccCchhhhcccchh-hcccCCCCCcccCChHHHHHHHHHHHhcccCC
Confidence 456677888999999999987766554321 123 345579998 6777777777666654
No 73
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=49.26 E-value=86 Score=28.56 Aligned_cols=29 Identities=3% Similarity=0.123 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEE-cCCCCC
Q 030618 16 EYIENMRKIALHLKSLSAKTRIIFL-SAPPIN 46 (174)
Q Consensus 16 ~y~~nl~~iI~~ir~~~~~~~IILi-tppp~~ 46 (174)
.=..||++.|+.++.. +.+++++ --++.+
T Consensus 356 sGl~NL~RHIenvr~F--GvPvVVAINKFd~D 385 (557)
T PRK13505 356 KGFANLERHIENIRKF--GVPVVVAINKFVTD 385 (557)
T ss_pred HHHHHHHHHHHHHHHc--CCCEEEEEeCCCCC
Confidence 3348888889999883 5666654 344444
No 74
>PLN02733 phosphatidylcholine-sterol O-acyltransferase
Probab=48.19 E-value=41 Score=29.61 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=32.1
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 030618 2 LPHSTGLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSA 42 (174)
Q Consensus 2 ~~~~~~~~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitp 42 (174)
..+|++.++....+.+.+.++++|+.+.+.+.+.+|+|++-
T Consensus 129 ~g~gYDwR~~~~~~~~~~~Lk~lIe~~~~~~g~~kV~LVGH 169 (440)
T PLN02733 129 FGFGYDFRQSNRLPETMDGLKKKLETVYKASGGKKVNIISH 169 (440)
T ss_pred ccCCCCccccccHHHHHHHHHHHHHHHHHHcCCCCEEEEEE
Confidence 45677777655578899999999999988766678888764
No 75
>TIGR03356 BGL beta-galactosidase.
Probab=47.90 E-value=1.8e+02 Score=25.37 Aligned_cols=63 Identities=10% Similarity=0.051 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCC
Q 030618 14 LPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDV 85 (174)
Q Consensus 14 l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v 85 (174)
-++..+.+..+|+.+++ .|+++|+.- ...+-..+.. ..+++ ...+.++.|.+..+.++++++=
T Consensus 89 n~~~~~~y~~~i~~l~~--~gi~pivtL-~Hfd~P~~l~-~~gGw-----~~~~~~~~f~~ya~~~~~~~~d 151 (427)
T TIGR03356 89 NPKGLDFYDRLVDELLE--AGIEPFVTL-YHWDLPQALE-DRGGW-----LNRDTAEWFAEYAAVVAERLGD 151 (427)
T ss_pred CHHHHHHHHHHHHHHHH--cCCeeEEee-ccCCccHHHH-hcCCC-----CChHHHHHHHHHHHHHHHHhCC
Confidence 34456778899999999 678887743 2233222111 01111 2345678888888899998874
No 76
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=47.57 E-value=1.4e+02 Score=26.46 Aligned_cols=72 Identities=7% Similarity=0.037 Sum_probs=42.9
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHH
Q 030618 2 LPHSTGLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQ 81 (174)
Q Consensus 2 ~~~~~~~~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~ 81 (174)
+|.|.++. .=++=.+.++++|+.+++ .|+++++ |....+-..+-....++| ...+.++.|.+..+.+.+
T Consensus 94 ~P~G~~~~---~N~~gl~~Y~~lid~L~~--~GI~P~V-TL~H~dlP~~L~~~yGGW-----~n~~~i~~F~~YA~~~f~ 162 (476)
T PRK09589 94 FPQGDELE---PNEEGLQFYDDLFDECLK--QGIEPVV-TLSHFEMPYHLVTEYGGW-----RNRKLIDFFVRFAEVVFT 162 (476)
T ss_pred CcCCCCCC---CCHHHHHHHHHHHHHHHH--cCCEEEE-EecCCCCCHHHHHhcCCc-----CChHHHHHHHHHHHHHHH
Confidence 67666432 244556678999999999 6788877 444444333221111222 123556677777777777
Q ss_pred HcC
Q 030618 82 EMD 84 (174)
Q Consensus 82 ~~~ 84 (174)
++|
T Consensus 163 ~fg 165 (476)
T PRK09589 163 RYK 165 (476)
T ss_pred Hhc
Confidence 775
No 77
>PRK13511 6-phospho-beta-galactosidase; Provisional
Probab=47.55 E-value=2e+02 Score=25.42 Aligned_cols=79 Identities=11% Similarity=0.191 Sum_probs=47.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHH
Q 030618 2 LPHSTGLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQ 81 (174)
Q Consensus 2 ~~~~~~~~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~ 81 (174)
+|.|.+ .+ =++=.+.++++|+.+++ .|+++++ |....+-..+-. ..++| ...+.++.|.+..+.+++
T Consensus 81 ~P~G~g---~v-N~~gl~~Y~~lid~l~~--~GI~P~V-TL~H~dlP~~L~-~~GGW-----~n~~~v~~F~~YA~~~~~ 147 (469)
T PRK13511 81 FPDGYG---EV-NPKGVEYYHRLFAECHK--RHVEPFV-TLHHFDTPEALH-SNGDW-----LNRENIDHFVRYAEFCFE 147 (469)
T ss_pred CcCCCC---Cc-CHHHHHHHHHHHHHHHH--cCCEEEE-EecCCCCcHHHH-HcCCC-----CCHHHHHHHHHHHHHHHH
Confidence 576653 23 33445678899999999 6788877 444444333221 11222 233557778877778888
Q ss_pred HcCCeEEechHHHh
Q 030618 82 EMDVKAIDLWTAMQ 95 (174)
Q Consensus 82 ~~~v~~iDl~~~~~ 95 (174)
++|= |+.|-.|.
T Consensus 148 ~fgd--Vk~W~T~N 159 (469)
T PRK13511 148 EFPE--VKYWTTFN 159 (469)
T ss_pred HhCC--CCEEEEcc
Confidence 8876 66655444
No 78
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=46.65 E-value=94 Score=24.58 Aligned_cols=63 Identities=10% Similarity=0.153 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEech
Q 030618 17 YIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLW 91 (174)
Q Consensus 17 y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~ 91 (174)
......+.+..+++ +|+||++.--.-.....+ ......+..++|.+.+.+++.++|+.=||+-
T Consensus 49 ~~~~~~~~i~~l~~--kG~KVl~sigg~~~~~~~----------~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD 111 (255)
T cd06542 49 LLTNKETYIRPLQA--KGTKVLLSILGNHLGAGF----------ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFD 111 (255)
T ss_pred hhHHHHHHHHHHhh--CCCEEEEEECCCCCCCCc----------cccCCHHHHHHHHHHHHHHHHHhCCCceEEe
Confidence 34666777888887 789998854322111111 0112335578899999999999998888773
No 79
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=45.63 E-value=79 Score=24.52 Aligned_cols=27 Identities=22% Similarity=0.207 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechHH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWTA 93 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~~ 93 (174)
..+......++++|.++++++|=+...
T Consensus 146 ~~~~~~~~~L~~la~~~~~~ii~~~q~ 172 (242)
T cd00984 146 QEVAEISRSLKLLAKELNVPVIALSQL 172 (242)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEeccc
Confidence 446677889999999999999977653
No 80
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=44.41 E-value=56 Score=24.34 Aligned_cols=60 Identities=15% Similarity=0.194 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEech
Q 030618 19 ENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLW 91 (174)
Q Consensus 19 ~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~ 91 (174)
..++++++.+++. +++.+|++-+...-.. + -...+....++...++++|+++|+.++=++
T Consensus 127 ~~~~~l~~~~~~~-~~~~lvviD~l~~~~~-----------~-~~~~~~~~~~~~~~l~~la~~~~~~vi~v~ 186 (193)
T PF13481_consen 127 EDLEELEAALKEL-YGPDLVVIDPLQSLHD-----------G-DENSNSAVAQLMQELKRLAKEYGVAVILVH 186 (193)
T ss_dssp HHHHHHHHHHTT-----SEEEEE-GGGG-------------S--TT-HHHHHHHHHHHHHHHHHH--EEEEEE
T ss_pred HHHHHHHHHHhhc-CCCcEEEEcCHHHHhc-----------C-CCCCHHHHHHHHHHHHHHHHHcCCEEEEEE
Confidence 3456666666663 4588888876421100 0 012233346788999999999999887543
No 81
>cd07583 nitrilase_5 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=44.15 E-value=97 Score=24.25 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=33.3
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEc---CCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE
Q 030618 13 PLPEYIENMRKIALHLKSLSAKTRIIFLS---APPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 13 ~l~~y~~nl~~iI~~ir~~~~~~~IILit---ppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i 88 (174)
+++...+.+.++++.+.+ .++.+|+.- .+......... ........+.+.++++|+++++.++
T Consensus 13 d~~~n~~~i~~~i~~A~~--~g~dlvv~PE~~l~g~~~~~~~~-----------~~~~~~~~~~~~l~~~a~~~~~~iv 78 (253)
T cd07583 13 DPEANIERVESLIEEAAA--AGADLIVLPEMWNTGYFLDDLYE-----------LADEDGGETVSFLSELAKKHGVNIV 78 (253)
T ss_pred CHHHHHHHHHHHHHHHHH--CCCCEEEcCCccCCCCChhhHHh-----------hhcccCchHHHHHHHHHHHcCcEEE
Confidence 345555556666666666 578887732 11111000000 0011123467788999999988776
No 82
>PRK08760 replicative DNA helicase; Provisional
Probab=43.80 E-value=1.1e+02 Score=27.10 Aligned_cols=28 Identities=21% Similarity=0.156 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechHHH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWTAM 94 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~~~ 94 (174)
..+....+.++++|++++|++|=+...-
T Consensus 362 ~ei~~Isr~LK~lAkel~ipVi~lsQLn 389 (476)
T PRK08760 362 TEISEISRSLKGLAKELNVPVIALSQLN 389 (476)
T ss_pred HHHHHHHHHHHHHHHHhCCEEEEeeccC
Confidence 4467788999999999999999876543
No 83
>COG1377 FlhB Flagellar biosynthesis pathway, component FlhB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=43.76 E-value=48 Score=28.48 Aligned_cols=88 Identities=10% Similarity=0.057 Sum_probs=48.8
Q ss_pred CCCceEEEEcCCCCChhh-hhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEec---hHHHhhcCCcccccccC
Q 030618 32 SAKTRIIFLSAPPINKQQ-IFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDL---WTAMQQRDDWLTTCFMD 107 (174)
Q Consensus 32 ~~~~~IILitppp~~~~~-~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl---~~~~~~~~~~~~~~~~D 107 (174)
-|++.+|+..|..+.-.. +....-... .-...-.+..+-.++++|+++||+++-- .-.+.... .=
T Consensus 260 Vp~AdvVItNPTH~AVAlkY~~~~~~AP----~VvAKG~d~~AlkIreiA~e~~Ipi~enppLARaLY~~~-------~v 328 (363)
T COG1377 260 VPKADVVITNPTHYAVALKYDPEKMPAP----VVVAKGVDLVALKIREIAKEHGIPIIENPPLARALYRQV-------EV 328 (363)
T ss_pred CCCCCEEeeCcCceeeeeeeccccCCCC----EEEEeCCcHHHHHHHHHHHHcCCceecChHHHHHHHHhc-------Cc
Confidence 488999998887654211 111000000 0011112347778999999999999952 22222111 11
Q ss_pred CCCCChHHHHHHHHHHHHHHHhc
Q 030618 108 GIHFSSEGSKIVVKEILKVLREA 130 (174)
Q Consensus 108 GvHpn~~Gy~~~a~~l~~~l~~~ 130 (174)
|=.-.+.=|+.+|+.+.-..+..
T Consensus 329 ~~~IP~e~y~aVaevL~~V~~~~ 351 (363)
T COG1377 329 GQQIPEELYKAVAEVLAYVYQLK 351 (363)
T ss_pred cccCCHHHHHHHHHHHHHHHHhh
Confidence 22345667888888887666553
No 84
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=43.67 E-value=1.4e+02 Score=24.51 Aligned_cols=64 Identities=6% Similarity=0.145 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcC-CCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEech
Q 030618 19 ENMRKIALHLKSLSAKTRIIFLSA-PPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLW 91 (174)
Q Consensus 19 ~nl~~iI~~ir~~~~~~~IILitp-pp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~ 91 (174)
..+..+++.+|+++++.++++--- -..+...+. ......+..+.+.+.+.++++++++.=||+.
T Consensus 51 ~~~~~~~~~~k~~~~~lkvlisiGG~~~~s~~fs---------~~~~~~~~R~~fi~siv~~l~~~~fDGidiD 115 (299)
T cd02879 51 SEFSTFTETVKRKNPSVKTLLSIGGGGSDSSAFA---------AMASDPTARKAFINSSIKVARKYGFDGLDLD 115 (299)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEeCCCCCCchhh---------HHhCCHHHHHHHHHHHHHHHHHhCCCceeec
Confidence 456777778888788899877421 111111111 1123345567788999999999998888773
No 85
>PRK08506 replicative DNA helicase; Provisional
Probab=43.35 E-value=93 Score=27.53 Aligned_cols=27 Identities=22% Similarity=0.181 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEechH
Q 030618 66 NESCRIYSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 66 n~~i~~y~~~i~~lA~~~~v~~iDl~~ 92 (174)
+..+....+.++++|++++|++|=+..
T Consensus 324 ~~ev~~isr~LK~lAkel~ipVi~lsQ 350 (472)
T PRK08506 324 HLQISEISRGLKLLARELDIPIIALSQ 350 (472)
T ss_pred HHHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 344667888999999999999997654
No 86
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=43.26 E-value=22 Score=28.98 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=19.5
Q ss_pred ccCCCCCChHHHHHHHHHHHHHH
Q 030618 105 FMDGIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 105 ~~DGvHpn~~Gy~~~a~~l~~~l 127 (174)
..||||+-.-+...++..|++.|
T Consensus 249 g~~GiHl~t~n~~~~~~~il~~l 271 (272)
T TIGR00676 249 GVPGIHFYTLNRADATLEICENL 271 (272)
T ss_pred CCCEEEEcCCCCHHHHHHHHHhh
Confidence 37999999999988888888765
No 87
>PRK08006 replicative DNA helicase; Provisional
Probab=42.91 E-value=73 Score=28.25 Aligned_cols=27 Identities=19% Similarity=0.132 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechHH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWTA 93 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~~ 93 (174)
..+......++.+|++++|++|=+-..
T Consensus 359 ~ei~~isr~LK~lAkel~ipVi~LsQL 385 (471)
T PRK08006 359 LEIAEISRSLKALAKELQVPVVALSQL 385 (471)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 457788899999999999999977643
No 88
>cd07581 nitrilase_3 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=42.75 E-value=88 Score=24.50 Aligned_cols=18 Identities=17% Similarity=0.427 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHcCCeEE
Q 030618 71 IYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 71 ~y~~~i~~lA~~~~v~~i 88 (174)
.+.+.++++|+++++.++
T Consensus 61 ~~~~~l~~~a~~~~i~iv 78 (255)
T cd07581 61 PFVSALARLARELGITVV 78 (255)
T ss_pred HHHHHHHHHHHHcCeEEE
Confidence 456778899999988766
No 89
>cd01020 TroA_b Metal binding protein TroA_b. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=42.55 E-value=90 Score=25.09 Aligned_cols=70 Identities=6% Similarity=0.069 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhhc
Q 030618 18 IENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQR 97 (174)
Q Consensus 18 ~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~ 97 (174)
.+.+.++++.+++ .++++|+..+..- . +..+.+..+|++.|++++.+.+
T Consensus 192 ~~~l~~l~~~ik~--~~v~~if~e~~~~---------------------~---k~~~~l~~la~~~~~~v~~l~~----- 240 (264)
T cd01020 192 PADIAAFQNAIKN--RQIDALIVNPQQA---------------------S---SATTNITGLAKRSGVPVVEVTE----- 240 (264)
T ss_pred HHHHHHHHHHHHh--CCCCEEEeCCCCC---------------------c---HHHHHHHHHHHHcCCCEEeecC-----
Confidence 5678999999999 6799999877421 1 2445566778999999876521
Q ss_pred CCcccccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 98 DDWLTTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 98 ~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
.+- ....|.-+-+..++.|.+
T Consensus 241 ----------~~~-~~~~y~~~m~~n~~~i~~ 261 (264)
T cd01020 241 ----------TMP-NGTTYLTWMLKQVDQLEK 261 (264)
T ss_pred ----------CCC-CCCCHHHHHHHHHHHHHH
Confidence 110 124677777777776665
No 90
>TIGR03772 anch_rpt_subst anchored repeat ABC transporter, substrate-binding protein. Members of this protein family are ABC transporter permease subunits as identified by pfam00950, but additionally contain the Actinobacterial insert domain described by TIGR03769. Some homologs (lacking the insert) have been described as transporters of manganese or of chelated iron. Members of this family typically are found along with an ATP-binding cassette protein, a permease, and an LPXTG-anchored protein with two or three copies of the TIGR03769 insert that occurs just once in this protein family.
Probab=42.28 E-value=1.7e+02 Score=26.09 Aligned_cols=71 Identities=13% Similarity=0.201 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhhc
Q 030618 18 IENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQR 97 (174)
Q Consensus 18 ~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~ 97 (174)
.+.|.++++.+++ .+++.|+..+-.- . + .+.++.+|++.|++++.++.
T Consensus 406 ~~~L~~Li~~IK~--~~V~~IF~Epq~~---------------------~---~-~~~l~~IA~e~Gv~V~~l~~----- 453 (479)
T TIGR03772 406 LADRRRLTRTIEN--LKVPAVFLEPNLA---------------------A---R-STTLNEIADELGVRVCAIYG----- 453 (479)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEeCCCC---------------------C---c-hHHHHHHHHHcCCcEEeeec-----
Confidence 5778999999999 6899999877321 0 0 23456778999998876531
Q ss_pred CCcccccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 98 DDWLTTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 98 ~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
|.+-.....|.-+.+..++.|.+
T Consensus 454 ---------d~l~~~~~tY~~~M~~N~~~L~~ 476 (479)
T TIGR03772 454 ---------DTFDDDVTNYVDLMRFNADSLAD 476 (479)
T ss_pred ---------CCCCCccccHHHHHHHHHHHHHH
Confidence 22212335788888887777765
No 91
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=42.25 E-value=58 Score=21.55 Aligned_cols=47 Identities=13% Similarity=0.155 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechH
Q 030618 20 NMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 20 nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~ 92 (174)
..++.++.++. ..++.+++.--- . ..+.+-+.++|++++++++.+.+
T Consensus 15 G~~~v~kai~~--gkaklViiA~D~---------------------~---~~~~~~i~~~c~~~~Vp~~~~~s 61 (82)
T PRK13602 15 GTKQTVKALKR--GSVKEVVVAEDA---------------------D---PRLTEKVEALANEKGVPVSKVDS 61 (82)
T ss_pred cHHHHHHHHHc--CCeeEEEEECCC---------------------C---HHHHHHHHHHHHHcCCCEEEECC
Confidence 45666677776 567777765410 0 12556677889999999998764
No 92
>cd07575 Xc-1258_like Xanthomonas campestris XC1258 and related proteins, members of the nitrilase superfamily (putative class 13 nitrilases). Uncharacterized subgroup belonging to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup either represents a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. XC1258 is a homotetramer.
Probab=41.75 E-value=72 Score=25.13 Aligned_cols=65 Identities=9% Similarity=-0.025 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE
Q 030618 15 PEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 15 ~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i 88 (174)
.+...|++++++.+++...++.+|+.-=.-+. .+.. .. ..........+.+.++++|+++++.++
T Consensus 13 ~d~~~N~~~~~~~i~~a~~gadlvvfPE~~l~--g~~~---~~----~~~~~~~~~~~~~~l~~la~~~~i~i~ 77 (252)
T cd07575 13 EDPEANLAHFEEKIEQLKEKTDLIVLPEMFTT--GFSM---NA----EALAEPMNGPTLQWMKAQAKKKGAAIT 77 (252)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCEEEeCCcCcC--CCCc---cH----HHhhcccCChHHHHHHHHHHHCCeEEE
Confidence 44666777777777664336888774211110 0000 00 000001123467788999999988666
No 93
>cd07197 nitrilase Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and
Probab=41.72 E-value=88 Score=24.20 Aligned_cols=19 Identities=21% Similarity=0.225 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHcCCeEE
Q 030618 70 RIYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 70 ~~y~~~i~~lA~~~~v~~i 88 (174)
..+.+.++++|+++++.++
T Consensus 62 ~~~~~~l~~~a~~~~i~ii 80 (253)
T cd07197 62 GPTLEALAELAKELGIYIV 80 (253)
T ss_pred chHHHHHHHHHHHhCeEEE
Confidence 3477788999999988776
No 94
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=41.62 E-value=1.1e+02 Score=24.72 Aligned_cols=74 Identities=11% Similarity=0.108 Sum_probs=42.5
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechH
Q 030618 13 PLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 13 ~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~ 92 (174)
+.++..+-+..+...+.+ .++++|++-.-.... +. .+.+ .+....-...+......++.+|.++++.+|=.+.
T Consensus 114 ~~~~l~~~L~~l~~~l~~--~~ikLIVIDSIaalf---r~-e~~~-~~~~~~R~~~L~~~~~~L~~lA~~~~iaVvvTNq 186 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSE--SKIKLIVIDSIAALF---RS-EFSG-RGDLAERQRMLARLARILKRLARKYNIAVVVTNQ 186 (256)
T ss_dssp SHHHHHHHHHHHHHHHHH--SCEEEEEEETSSHHH---HH-HSGS-TTTHHHHHHHHHHHHHHHHHHHHHTT-EEEEEEE
T ss_pred CHHHHHHHHHHHHhhccc--cceEEEEecchHHHH---HH-HHcc-chhhHHHHHHHHHHHHHHHHHHHhCCceEEeece
Confidence 345555556666555555 578988887644221 11 1110 0111112455777888999999999999884444
Q ss_pred H
Q 030618 93 A 93 (174)
Q Consensus 93 ~ 93 (174)
.
T Consensus 187 v 187 (256)
T PF08423_consen 187 V 187 (256)
T ss_dssp E
T ss_pred e
Confidence 3
No 95
>TIGR01552 phd_fam prevent-host-death family protein. This model recognizes a region of about 55 amino acids toward the N-terminal end of bacterial proteins of about 85 amino acids in length. The best-characterized member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (TIGR01550) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family.
Probab=40.53 E-value=64 Score=18.86 Aligned_cols=26 Identities=12% Similarity=0.262 Sum_probs=20.6
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEE
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFL 40 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILi 40 (174)
++..++++|+.++++.+.. .+ +|++.
T Consensus 2 v~~te~r~~~~~~l~~v~~--~~-pv~It 27 (52)
T TIGR01552 2 VSLSEAKNKLGELLKRVRD--GE-PVTIT 27 (52)
T ss_pred cCHHHHHHHHHHHHHHHHC--CC-CEEEE
Confidence 5788999999999999987 44 55554
No 96
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=40.33 E-value=1.5e+02 Score=24.56 Aligned_cols=67 Identities=12% Similarity=0.132 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEech
Q 030618 15 PEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLW 91 (174)
Q Consensus 15 ~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~ 91 (174)
+....++.++. .+|+.+++.||++.--.--....+ .......+..+.+.+.+.++++++++.=||+.
T Consensus 66 ~~~~~~~~~~~-~lk~~~p~lkvl~siGG~~~s~~f---------~~~~~~~~~r~~Fi~siv~~l~~~~fDGidiD 132 (322)
T cd06548 66 QPLKGNFGQLR-KLKQKNPHLKILLSIGGWTWSGGF---------SDAAATEASRAKFADSAVDFIRKYGFDGIDID 132 (322)
T ss_pred ccchhHHHHHH-HHHHhCCCCEEEEEEeCCCCCCCc---------hhHhCCHHHHHHHHHHHHHHHHhcCCCeEEEC
Confidence 34556677765 667767888888743211111111 11223455567899999999999999988874
No 97
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=40.23 E-value=2.3e+02 Score=24.01 Aligned_cols=120 Identities=6% Similarity=0.046 Sum_probs=72.8
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhh---h--hcccc-----ccccCCChHHHHHHHHHHHHHH
Q 030618 11 HVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFE---S--HLSTD-----FAVWGRTNESCRIYSEACLKLC 80 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~---~--~~~~~-----~~~~~~~n~~i~~y~~~i~~lA 80 (174)
....+.+.+=+..-++.+|+..|+++|+|=.-.+-+...... . ..+.. .+.+..+...+..+...+..++
T Consensus 146 ~~~~~~~a~ll~ag~~AVr~~~p~~kV~lH~~~~~~~~~~~~~f~~l~~~g~d~DviGlSyYP~w~~~l~~l~~~l~~l~ 225 (332)
T PF07745_consen 146 PSNWDNLAKLLNAGIKAVREVDPNIKVMLHLANGGDNDLYRWFFDNLKAAGVDFDVIGLSYYPFWHGTLEDLKNNLNDLA 225 (332)
T ss_dssp TT-HHHHHHHHHHHHHHHHTHSSTSEEEEEES-TTSHHHHHHHHHHHHHTTGG-SEEEEEE-STTST-HHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhcCCCCcEEEEECCCCchHHHHHHHHHHHhcCCCcceEEEecCCCCcchHHHHHHHHHHHH
Confidence 455677777788888899998899999996555544322111 0 00110 1234445557888999999999
Q ss_pred HHcCCeEEechHHHhhc----CCccccc----ccCCCCCChHHHHHHHHHHHHHHHhc
Q 030618 81 QEMDVKAIDLWTAMQQR----DDWLTTC----FMDGIHFSSEGSKIVVKEILKVLREA 130 (174)
Q Consensus 81 ~~~~v~~iDl~~~~~~~----~~~~~~~----~~DGvHpn~~Gy~~~a~~l~~~l~~~ 130 (174)
++++-+++=+.....-. .+..... ...|.=.|++|.+.+-+.|++.++..
T Consensus 226 ~ry~K~V~V~Et~yp~t~~d~D~~~n~~~~~~~~~~yp~t~~GQ~~~l~~l~~~v~~~ 283 (332)
T PF07745_consen 226 SRYGKPVMVVETGYPWTLDDGDGTGNIIGATSLISGYPATPQGQADFLRDLINAVKNV 283 (332)
T ss_dssp HHHT-EEEEEEE---SBS--SSSS--SSSSSTGGTTS-SSHHHHHHHHHHHHHHHHTS
T ss_pred HHhCCeeEEEeccccccccccccccccCccccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence 99987666444333221 1111111 45688889999999999999999873
No 98
>PLN02540 methylenetetrahydrofolate reductase
Probab=39.95 E-value=1.1e+02 Score=27.91 Aligned_cols=25 Identities=20% Similarity=0.149 Sum_probs=21.5
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 105 FMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 105 ~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
..+|+|+-.-+....+..|++.+.-
T Consensus 261 Gv~GiHfYTlN~e~~v~~ILe~lgl 285 (565)
T PLN02540 261 GIKGLHLYTLNLEKSALAILMNLGL 285 (565)
T ss_pred CCCEEEECccCChHHHHHHHHHcCC
Confidence 3789999999999999999887754
No 99
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=39.69 E-value=1.2e+02 Score=25.96 Aligned_cols=48 Identities=10% Similarity=0.266 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCe
Q 030618 14 LPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVK 86 (174)
Q Consensus 14 l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~ 86 (174)
...|.+.|+.++..+++ .+++||.-+-- .|. ....+.++++|++.|+.
T Consensus 53 ~~~~~~~L~~~L~~~~~--~gIkvI~NaGg---------------------~np--~~~a~~v~eia~e~Gl~ 100 (362)
T PF07287_consen 53 APDFVRDLRPLLPAAAE--KGIKVITNAGG---------------------LNP--AGCADIVREIARELGLS 100 (362)
T ss_pred hHHHHHHHHHHHHHHHh--CCCCEEEeCCC---------------------CCH--HHHHHHHHHHHHhcCCC
Confidence 45677899999999999 68999886431 121 23777888888888665
No 100
>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3.1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....
Probab=39.35 E-value=1.5e+02 Score=21.86 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 030618 14 LPEYIENMRKIALHLKSLSAKTRIIFLSAP 43 (174)
Q Consensus 14 l~~y~~nl~~iI~~ir~~~~~~~IILitpp 43 (174)
.+...+.+++.++.++.. |++.+.+.+.
T Consensus 66 r~~~~~~~~~~i~~a~~l--g~~~i~~~~g 93 (213)
T PF01261_consen 66 REEALEYLKKAIDLAKRL--GAKYIVVHSG 93 (213)
T ss_dssp HHHHHHHHHHHHHHHHHH--TBSEEEEECT
T ss_pred hHHHHHHHHHHHHHHHHh--CCCceeecCc
Confidence 567788899999999995 5887777765
No 101
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=39.32 E-value=91 Score=27.91 Aligned_cols=75 Identities=11% Similarity=0.176 Sum_probs=50.5
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCCh--hhhhhhhccccccccCCChHHHHH----HHHHHHHHHHHcC-C
Q 030618 13 PLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINK--QQIFESHLSTDFAVWGRTNESCRI----YSEACLKLCQEMD-V 85 (174)
Q Consensus 13 ~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~--~~~~~~~~~~~~~~~~~~n~~i~~----y~~~i~~lA~~~~-v 85 (174)
....+.+.++++|..+|+ +|+-|+++|..|.+- ..... --.+....++. =.++++..|+.+. -
T Consensus 271 a~kall~~ieqvvrLIRS--KGVGv~fvTQ~P~DiP~~VL~Q--------LGnrIQHaLRAfTP~DqKavk~aa~tfr~n 340 (502)
T PF05872_consen 271 APKALLDKIEQVVRLIRS--KGVGVYFVTQNPTDIPDDVLGQ--------LGNRIQHALRAFTPKDQKAVKAAAETFRPN 340 (502)
T ss_pred CCHHHHHHHHHHHHHhhc--cCceEEEEeCCCCCCCHHHHHh--------hhhHHHHHHhcCCHhHHHHHHHHHHhCCCC
Confidence 456788899999999999 789999999777653 22211 01233333333 2367777777775 3
Q ss_pred eEEechHHHhhc
Q 030618 86 KAIDLWTAMQQR 97 (174)
Q Consensus 86 ~~iDl~~~~~~~ 97 (174)
+.+|+-+.+...
T Consensus 341 p~~d~~~~it~L 352 (502)
T PF05872_consen 341 PAFDTEEVITEL 352 (502)
T ss_pred ccccHHHHHhhc
Confidence 678988888764
No 102
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=39.22 E-value=1e+02 Score=26.52 Aligned_cols=27 Identities=26% Similarity=0.169 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechHH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWTA 93 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~~ 93 (174)
..+....+.++++|++++|++|=+...
T Consensus 327 ~~~~~i~~~Lk~lAke~~i~Vi~lsQl 353 (421)
T TIGR03600 327 EELGGISRGLKALAKELDVPVVLLAQL 353 (421)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEeccc
Confidence 456678889999999999999987643
No 103
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=38.85 E-value=62 Score=25.66 Aligned_cols=70 Identities=10% Similarity=0.143 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhh
Q 030618 17 YIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQ 96 (174)
Q Consensus 17 y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~ 96 (174)
+..++++++..+++ .+++++|++-- |...+.-+|.+.|+++-++|.-...
T Consensus 89 lT~Gi~eLv~~L~~--~~~~v~liSGG----------------------------F~~~i~~Va~~Lgi~~~n~yAN~l~ 138 (227)
T KOG1615|consen 89 LTPGIRELVSRLHA--RGTQVYLISGG----------------------------FRQLIEPVAEQLGIPKSNIYANELL 138 (227)
T ss_pred cCCCHHHHHHHHHH--cCCeEEEEcCC----------------------------hHHHHHHHHHHhCCcHhhhhhheee
Confidence 34568889999998 67899988762 2223334567788888666543322
Q ss_pred cCCcccccccCCCCCChHHH
Q 030618 97 RDDWLTTCFMDGIHFSSEGS 116 (174)
Q Consensus 97 ~~~~~~~~~~DGvHpn~~Gy 116 (174)
-....+....|-.-|+.+|.
T Consensus 139 fd~~Gk~~gfd~~~ptsdsg 158 (227)
T KOG1615|consen 139 FDKDGKYLGFDTNEPTSDSG 158 (227)
T ss_pred eccCCcccccccCCccccCC
Confidence 21112233346677777654
No 104
>PRK05636 replicative DNA helicase; Provisional
Probab=38.75 E-value=82 Score=28.25 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechHH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWTA 93 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~~ 93 (174)
..+......++.+|++++|++|=+-..
T Consensus 398 ~ei~~isr~LK~lAkel~ipVi~lsQL 424 (505)
T PRK05636 398 QEVSEFSRQLKLLAKELDVPLIAISQL 424 (505)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEeec
Confidence 457788999999999999999977543
No 105
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=38.61 E-value=1.1e+02 Score=23.90 Aligned_cols=64 Identities=8% Similarity=0.087 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHH
Q 030618 17 YIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAM 94 (174)
Q Consensus 17 y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~ 94 (174)
....++.+++.++. .++++|++-|... +.. .....+.....+.+.++++|++.|+.++=++...
T Consensus 96 ~~~~~~~l~~~~~~--~~~~lvviDpl~~----~~~--------~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 96 VVPEFERIIEQLLI--RRIDLVVIDPLVS----FHG--------VSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred ccHHHHHHHHHHHh--cCCCEEEECChHH----hCC--------CCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 34567778877776 5789999985321 000 0012234455677788899999998887655433
No 106
>PLN02814 beta-glucosidase
Probab=38.50 E-value=2.1e+02 Score=25.68 Aligned_cols=71 Identities=11% Similarity=0.085 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHH
Q 030618 2 LPHSTGLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQ 81 (174)
Q Consensus 2 ~~~~~~~~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~ 81 (174)
+|.|.+ .+ =++=.+.++.+|+.+++ .|+++++ |....+-..+-....++| ...+.++.|.+..+.+.+
T Consensus 104 ~P~G~g---~~-N~~Gl~fY~~lId~l~~--~GI~P~V-TL~H~dlP~~L~~~yGGW-----~n~~~i~~F~~YA~~~f~ 171 (504)
T PLN02814 104 IPNGRG---LI-NPKGLLFYKNLIKELRS--HGIEPHV-TLYHYDLPQSLEDEYGGW-----INRKIIEDFTAFADVCFR 171 (504)
T ss_pred CcCCCC---CC-CHHHHHHHHHHHHHHHH--cCCceEE-EecCCCCCHHHHHhcCCc-----CChhHHHHHHHHHHHHHH
Confidence 576643 23 45556678999999999 6798877 444444333221111222 233556777777777777
Q ss_pred HcC
Q 030618 82 EMD 84 (174)
Q Consensus 82 ~~~ 84 (174)
++|
T Consensus 172 ~fg 174 (504)
T PLN02814 172 EFG 174 (504)
T ss_pred HhC
Confidence 775
No 107
>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase. This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.
Probab=38.44 E-value=1.6e+02 Score=23.12 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 030618 14 LPEYIENMRKIALHLKSLSAKTRIIFLSA 42 (174)
Q Consensus 14 l~~y~~nl~~iI~~ir~~~~~~~IILitp 42 (174)
.+++.+.+++.|+.++.. |++.|.+.+
T Consensus 79 ~~~~~~~~~~~i~~a~~l--g~~~i~~~~ 105 (254)
T TIGR03234 79 EEEFREGVALAIAYARAL--GCPQVNCLA 105 (254)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCEEEECc
Confidence 356678899999999994 677666543
No 108
>PF10566 Glyco_hydro_97: Glycoside hydrolase 97 ; InterPro: IPR019563 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This is the 97th family of glycosidases, in this case bacterial. The central part of the GH97 family protein sequences represents a typical and complete (beta/alpha)8-barrel or catalytic TIM-barrel type domain. The N- and C-terminal parts of the sequences, mainly consisting of beta-strands, most probably form two additional non-catalytic domains with as yet unknown functions. The non-catalytic domains of glycosidases from the alpha-galactosidase and alpha-glucosidase superfamilies are also predominantly composed of beta-strands, and at least some of these domains are involved in oligomerisation and carbohydrate binding. In all known glycosidases with the (beta-alpha)8-barrel fold, the amino acid residues at the active site are located on the C-termini of the beta-strands []. ; PDB: 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A 3A24_A.
Probab=38.43 E-value=76 Score=26.15 Aligned_cols=92 Identities=11% Similarity=0.115 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCC------Chhhhhhh--hccc------cccccCCChH-HHHHHHHHHHHHHHHc
Q 030618 19 ENMRKIALHLKSLSAKTRIIFLSAPPI------NKQQIFES--HLST------DFAVWGRTNE-SCRIYSEACLKLCQEM 83 (174)
Q Consensus 19 ~nl~~iI~~ir~~~~~~~IILitppp~------~~~~~~~~--~~~~------~~~~~~~~n~-~i~~y~~~i~~lA~~~ 83 (174)
..|.++++-+++ .|+.|+|..-... .+...... .+.+ +.+.+.+..+ .++-|.+ +.+-|.++
T Consensus 73 ~dl~elv~Ya~~--KgVgi~lw~~~~~~~~~~~~~~~~~~~f~~~~~~Gv~GvKidF~~~d~Q~~v~~y~~-i~~~AA~~ 149 (273)
T PF10566_consen 73 FDLPELVDYAKE--KGVGIWLWYHSETGGNVANLEKQLDEAFKLYAKWGVKGVKIDFMDRDDQEMVNWYED-ILEDAAEY 149 (273)
T ss_dssp --HHHHHHHHHH--TT-EEEEEEECCHTTBHHHHHCCHHHHHHHHHHCTEEEEEEE--SSTSHHHHHHHHH-HHHHHHHT
T ss_pred cCHHHHHHHHHH--cCCCEEEEEeCCcchhhHhHHHHHHHHHHHHHHcCCCEEeeCcCCCCCHHHHHHHHH-HHHHHHHc
Confidence 578999999999 6788888765443 11111100 0111 1223344433 3444444 44556665
Q ss_pred CCeEEechHHHhhcC---CcccccccCCCCCChH
Q 030618 84 DVKAIDLWTAMQQRD---DWLTTCFMDGIHFSSE 114 (174)
Q Consensus 84 ~v~~iDl~~~~~~~~---~~~~~~~~DGvHpn~~ 114 (174)
+ .+||+|....-.+ .++..++..||+=.+.
T Consensus 150 ~-LmvnfHg~~kPtG~~RTyPN~mT~EgVrG~E~ 182 (273)
T PF10566_consen 150 K-LMVNFHGATKPTGLRRTYPNLMTREGVRGQEY 182 (273)
T ss_dssp T--EEEETTS---TTHHHCSTTEEEE--S--GGG
T ss_pred C-cEEEecCCcCCCcccccCccHHHHHHhhhhhh
Confidence 5 4678888776543 5667788888876554
No 109
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=38.24 E-value=65 Score=22.03 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEcCCC
Q 030618 17 YIENMRKIALHLKSLSAKTRIIFLSAPP 44 (174)
Q Consensus 17 y~~nl~~iI~~ir~~~~~~~IILitppp 44 (174)
....+.++++.+|+.+|+++|++.++.+
T Consensus 64 ~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 64 NLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp HHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred cHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 3455688888888888899999998865
No 110
>cd07576 R-amidase_like Pseudomonas sp. MCI3434 R-amidase and related proteins (putative class 13 nitrilases). Pseudomonas sp. MCI3434 R-amidase hydrolyzes (R,S)-piperazine-2-tert-butylcarboxamide to form (R)-piperazine-2-carboxylic acid. It does so with strict R-stereoselectively. Its preferred substrates are carboxamide compounds which have the amino or imino group connected to their beta- or gamma-carbon. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), class 13 represents proteins that at the time were difficult to place in a distinct similarity group. It has been suggested that this subgroup represents a new class. Members of the nitrilase superfamily generally form homomeric compl
Probab=38.20 E-value=1.2e+02 Score=23.57 Aligned_cols=18 Identities=6% Similarity=0.041 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHcCCeEE
Q 030618 71 IYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 71 ~y~~~i~~lA~~~~v~~i 88 (174)
.+.+.++++|+++++.++
T Consensus 62 ~~~~~l~~~a~~~~~~ii 79 (254)
T cd07576 62 PALQALRAIARRHGIAIV 79 (254)
T ss_pred hHHHHHHHHHHHcCCEEE
Confidence 466778899999988766
No 111
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. The known structures in this domain show a common phosphate binding site []. ; PDB: 4A1O_A 3ZZM_A 1ZCZ_A 1M6V_C 1CS0_C 1C30_E 1C3O_G 1BXR_A 1T36_E 1A9X_A ....
Probab=37.41 E-value=89 Score=20.84 Aligned_cols=44 Identities=14% Similarity=0.186 Sum_probs=28.9
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE
Q 030618 23 KIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 23 ~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i 88 (174)
.+++.++. .++..|+.+|.+..... . .-...+++.|.+++|+++
T Consensus 51 ~i~~~i~~--~~IdlVIn~~~~~~~~~---------------~-----~dg~~irr~a~~~~Ip~~ 94 (95)
T PF02142_consen 51 QIMDLIKN--GKIDLVINTPYPFSDQE---------------H-----TDGYKIRRAAVEYNIPLF 94 (95)
T ss_dssp HHHHHHHT--TSEEEEEEE--THHHHH---------------T-----HHHHHHHHHHHHTTSHEE
T ss_pred HHHHHHHc--CCeEEEEEeCCCCcccc---------------c-----CCcHHHHHHHHHcCCCCc
Confidence 57788888 67888888886532211 0 134468889999999875
No 112
>PRK08840 replicative DNA helicase; Provisional
Probab=37.02 E-value=1.3e+02 Score=26.67 Aligned_cols=27 Identities=19% Similarity=0.148 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechHH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWTA 93 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~~ 93 (174)
..+....+.++.+|++++|++|=+-..
T Consensus 352 ~ei~~isr~LK~lAkel~ipVi~LsQL 378 (464)
T PRK08840 352 LEIAEISRSLKALAKELNVPVVALSQL 378 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 457788999999999999999987643
No 113
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=36.81 E-value=68 Score=27.92 Aligned_cols=56 Identities=11% Similarity=0.134 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE-echH
Q 030618 14 LPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI-DLWT 92 (174)
Q Consensus 14 l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i-Dl~~ 92 (174)
.+...-+++++-+.+++ ...++|+++....... - .| +.++++|.+.|+.++ |.--
T Consensus 151 ~~~~~ID~d~l~~~a~~--~kPklIi~G~S~y~~~------------------~---d~-~~~reIad~vga~l~~D~sH 206 (399)
T PF00464_consen 151 PDTGLIDYDELEKLAKE--HKPKLIICGASSYPRP------------------I---DF-KRFREIADEVGAYLMADISH 206 (399)
T ss_dssp TTTSSB-HHHHHHHHHH--H--SEEEEE-SSTSS------------------------H-HHHHHHHHHTT-EEEEE-TT
T ss_pred cCCCeECHHHHHHHHhh--cCCCEEEECchhccCc------------------c---CH-HHHHHHHHhcCcEEEecccc
Confidence 33455567788888888 4578899887543211 1 13 345678888886665 8654
Q ss_pred H
Q 030618 93 A 93 (174)
Q Consensus 93 ~ 93 (174)
.
T Consensus 207 ~ 207 (399)
T PF00464_consen 207 I 207 (399)
T ss_dssp T
T ss_pred c
Confidence 3
No 114
>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.52 E-value=2e+02 Score=22.19 Aligned_cols=84 Identities=7% Similarity=0.152 Sum_probs=49.5
Q ss_pred ChHHHHHHHHHHHHHHHhhC--CCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEec
Q 030618 13 PLPEYIENMRKIALHLKSLS--AKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDL 90 (174)
Q Consensus 13 ~l~~y~~nl~~iI~~ir~~~--~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl 90 (174)
.-++..-|++..+.+++.+. -+..|||++--.-- .+... --.+..+++|.++|++|+..
T Consensus 101 T~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL------------------~~~R~-Vs~~qa~~La~kyglPYfET 161 (219)
T KOG0081|consen 101 TSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADL------------------EDQRV-VSEDQAAALADKYGLPYFET 161 (219)
T ss_pred cchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccch------------------hhhhh-hhHHHHHHHHHHhCCCeeee
Confidence 34556667888888888752 45677877652110 01100 11245678999999999986
Q ss_pred hHHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHHHh
Q 030618 91 WTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
....... -++.-.++-+.+++.|+.
T Consensus 162 SA~tg~N--------------v~kave~LldlvM~Rie~ 186 (219)
T KOG0081|consen 162 SACTGTN--------------VEKAVELLLDLVMKRIEQ 186 (219)
T ss_pred ccccCcC--------------HHHHHHHHHHHHHHHHHH
Confidence 5332211 134556667777777765
No 115
>PLN02849 beta-glucosidase
Probab=36.35 E-value=2.5e+02 Score=25.15 Aligned_cols=71 Identities=11% Similarity=0.101 Sum_probs=42.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHH
Q 030618 2 LPHSTGLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQ 81 (174)
Q Consensus 2 ~~~~~~~~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~ 81 (174)
+|.|.+ .+ =++-.+.++.+|+.+++ .|+++++ |....+-..+-....++| ...+.++.|.+..+.+.+
T Consensus 106 ~P~G~g---~v-N~~gl~fY~~lid~l~~--~GI~P~V-TL~H~dlP~~L~~~yGGW-----~nr~~v~~F~~YA~~~f~ 173 (503)
T PLN02849 106 IPNGRG---SV-NPKGLQFYKNFIQELVK--HGIEPHV-TLFHYDHPQYLEDDYGGW-----INRRIIKDFTAYADVCFR 173 (503)
T ss_pred CcCCCC---CC-CHHHHHHHHHHHHHHHH--cCCeEEE-eecCCCCcHHHHHhcCCc-----CCchHHHHHHHHHHHHHH
Confidence 566543 23 35556778999999999 6898877 444444333222111222 223556777777777777
Q ss_pred HcC
Q 030618 82 EMD 84 (174)
Q Consensus 82 ~~~ 84 (174)
++|
T Consensus 174 ~fg 176 (503)
T PLN02849 174 EFG 176 (503)
T ss_pred Hhc
Confidence 774
No 116
>cd07572 nit Nit1, Nit 2, and related proteins, and the Nit1-like domain of NitFhit (class 10 nitrilases). This subgroup includes mammalian Nit1 and Nit2, the Nit1-like domain of the invertebrate NitFhit, and various uncharacterized bacterial and archaeal Nit-like proteins. Nit1 and Nit2 are candidate tumor suppressor proteins. In NitFhit, the Nit1-like domain is encoded as a fusion protein with the non-homologous tumor suppressor, fragile histidine triad (Fhit). Mammalian Nit1 and Fhit may affect distinct signal pathways, and both may participate in DNA damage-induced apoptosis. Nit1 is a negative regulator in T cells. Overexpression of Nit2 in HeLa cells leads to a suppression of cell growth through cell cycle arrest in G2. These Nit proteins and the Nit1-like domain of NitFhit belong to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in t
Probab=36.19 E-value=1.3e+02 Score=23.70 Aligned_cols=18 Identities=17% Similarity=0.095 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHcCCeEE
Q 030618 71 IYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 71 ~y~~~i~~lA~~~~v~~i 88 (174)
.+.+.++++|+++++.++
T Consensus 62 ~~~~~l~~~a~~~~i~i~ 79 (265)
T cd07572 62 PTLQALSELAKEHGIWLV 79 (265)
T ss_pred hHHHHHHHHHHHCCeEEE
Confidence 466788999999998776
No 117
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=35.98 E-value=63 Score=22.33 Aligned_cols=32 Identities=13% Similarity=0.100 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHHHHHhhCC-CceEEEEcCCCCC
Q 030618 15 PEYIENMRKIALHLKSLSA-KTRIIFLSAPPIN 46 (174)
Q Consensus 15 ~~y~~nl~~iI~~ir~~~~-~~~IILitppp~~ 46 (174)
......+.++++.+|+..+ +++|++.+.++..
T Consensus 61 ~~~~~~~~~~i~~l~~~~~~~~~i~vGG~~~~~ 93 (119)
T cd02067 61 TTHMTLMKEVIEELKEAGLDDIPVLVGGAIVTR 93 (119)
T ss_pred cccHHHHHHHHHHHHHcCCCCCeEEEECCCCCh
Confidence 4455677888888888766 6777777766543
No 118
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=35.85 E-value=1e+02 Score=27.11 Aligned_cols=47 Identities=19% Similarity=0.282 Sum_probs=33.2
Q ss_pred CceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE--echHHHhh
Q 030618 34 KTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI--DLWTAMQQ 96 (174)
Q Consensus 34 ~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i--Dl~~~~~~ 96 (174)
+++.++++|..-+..... . -.+=++.+.++|+++++.+| |.|..|.-
T Consensus 226 ~~k~~y~~P~~qNPtG~t-------------m---s~~rR~~Ll~lA~~~~~~IIEDD~y~el~~ 274 (459)
T COG1167 226 KPKAVYVTPTFQNPTGVT-------------M---SLERRKALLALAEKYDVLIIEDDYYGELRY 274 (459)
T ss_pred CCcEEEECCCCCCCCCCc-------------c---CHHHHHHHHHHHHHcCCeEEeeCcchhhhc
Confidence 589999998765543321 1 12356778899999999999 78877754
No 119
>PRK06298 type III secretion system protein; Validated
Probab=35.66 E-value=60 Score=27.77 Aligned_cols=87 Identities=5% Similarity=-0.031 Sum_probs=47.3
Q ss_pred CCCceEEEEcCCCCChhh-hhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechH---HHhhcCCcccccccC
Q 030618 32 SAKTRIIFLSAPPINKQQ-IFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWT---AMQQRDDWLTTCFMD 107 (174)
Q Consensus 32 ~~~~~IILitppp~~~~~-~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~---~~~~~~~~~~~~~~D 107 (174)
-+++.||+..|..+.-.- +....... .--...-.+..+..++++|+++||+++---. .+..... ..|
T Consensus 254 V~~AdVVItNPTH~AVALkYd~~~~~A----P~VvAKG~d~~A~~Ir~iA~e~~VPiven~pLARaLy~~~e-----vg~ 324 (356)
T PRK06298 254 VKHASAVVSNPKDIAVAIGYMPEKYKA----PWIIAMGINLRAKRIIAEAEKYGVPIMRNVPLAHQLLDEGK-----ELK 324 (356)
T ss_pred CCCCcEEEECCCceEEEeEeCCCCCCC----CEEEEeeCcHHHHHHHHHHHHcCCCEEeCHHHHHHHHHcCC-----CCC
Confidence 388999999887653211 11000000 0011111235888999999999999996322 2211110 122
Q ss_pred CCCCChHHHHHHHHHHHHHHHh
Q 030618 108 GIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 108 GvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
-| .++=|+.+|+.+.-..+.
T Consensus 325 ~I--P~ely~AVA~IL~~v~~l 344 (356)
T PRK06298 325 FI--PESTYEAIGEILLYITSL 344 (356)
T ss_pred cC--CHHHHHHHHHHHHHHHHH
Confidence 23 456788888877665554
No 120
>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]
Probab=35.57 E-value=90 Score=27.16 Aligned_cols=56 Identities=11% Similarity=0.205 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE
Q 030618 17 YIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 17 y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i 88 (174)
....++.+|..-+.. +++|.-+..-|+-.+. .-|.....|-+-+++++++++|.||
T Consensus 254 Cl~~Ve~li~~~~~k--~~pVaaiIvEPIQsEG--------------GDnhaSp~Ff~kLrdi~~Kh~v~fi 309 (484)
T KOG1405|consen 254 CLAEVEDLIVKYRKK--KKPVAAIIVEPIQSEG--------------GDNHASPDFFRKLRDITKKHGVAFI 309 (484)
T ss_pred HHHHHHHHHHHHhhc--CCCeEEEEeechhccC--------------CCccCCHHHHHHHHHHHHhcCeEEE
Confidence 445677777777763 3444333332222111 2233334677888999999999988
No 121
>PRK13109 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=35.18 E-value=62 Score=27.72 Aligned_cols=87 Identities=8% Similarity=0.029 Sum_probs=46.0
Q ss_pred CCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechH---HHhhcCCcccccccCC
Q 030618 32 SAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWT---AMQQRDDWLTTCFMDG 108 (174)
Q Consensus 32 ~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~---~~~~~~~~~~~~~~DG 108 (174)
-+++.+|+..|..+.-.-... .+.. ....-...-.+..+..++++|+++||+++---. .+.... -..|-
T Consensus 262 V~~AdVVItNPTH~AVAL~Yd--~~~~-~aP~VvAKG~d~~A~~Ir~~A~e~~VPiven~pLARaLy~~~-----evg~~ 333 (358)
T PRK13109 262 VPRATLVIANPTHFAIALRYE--RSEN-PAPLVVAKGQDLIALKIREIAEENGIPVIEDKPLARSLYDAV-----QVDQV 333 (358)
T ss_pred CCCCcEEEECCCceEEEeEeC--CCCC-CCCEEEEEeCcHHHHHHHHHHHHcCCCEEeCHHHHHHHHHhC-----CCCCc
Confidence 378999999887653211000 0000 000001111235788999999999999995322 221111 01222
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 030618 109 IHFSSEGSKIVVKEILKVLR 128 (174)
Q Consensus 109 vHpn~~Gy~~~a~~l~~~l~ 128 (174)
| .++=|+.+|+.+.-..+
T Consensus 334 I--P~ely~AVA~ILa~v~~ 351 (358)
T PRK13109 334 I--PAEFYRPVAQILYFLFS 351 (358)
T ss_pred C--CHHHHHHHHHHHHHHHH
Confidence 2 55678888877765544
No 122
>PRK09165 replicative DNA helicase; Provisional
Probab=34.92 E-value=1.6e+02 Score=26.26 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechHHH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWTAM 94 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~~~ 94 (174)
..+......++.+|++++|++|=+-..-
T Consensus 366 ~ev~~is~~LK~lAkel~ipVi~lsQLn 393 (497)
T PRK09165 366 QEISEITQGLKALAKELNIPVIALSQLS 393 (497)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEeeccc
Confidence 3477888999999999999999775533
No 123
>PRK09856 fructoselysine 3-epimerase; Provisional
Probab=34.60 E-value=1.9e+02 Score=22.84 Aligned_cols=61 Identities=8% Similarity=-0.036 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE
Q 030618 15 PEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 15 ~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i 88 (174)
+...+.++..|+.++. -|++.|++.+......... ....+...+.-+.+.++|+++|+.+.
T Consensus 86 ~~~~~~~~~~i~~a~~--lGa~~i~~~~~~~~~~~~~-----------~~~~~~~~~~l~~l~~~a~~~gv~l~ 146 (275)
T PRK09856 86 RESLDMIKLAMDMAKE--MNAGYTLISAAHAGYLTPP-----------NVIWGRLAENLSELCEYAENIGMDLI 146 (275)
T ss_pred HHHHHHHHHHHHHHHH--hCCCEEEEcCCCCCCCCCH-----------HHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence 4456677788888888 4688887765321110000 00112222344556677888888665
No 124
>PRK12721 secretion system apparatus protein SsaU; Reviewed
Probab=34.18 E-value=62 Score=27.61 Aligned_cols=87 Identities=9% Similarity=0.011 Sum_probs=45.0
Q ss_pred CCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEech---HHHhhcCCcccccccCC
Q 030618 32 SAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLW---TAMQQRDDWLTTCFMDG 108 (174)
Q Consensus 32 ~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~---~~~~~~~~~~~~~~~DG 108 (174)
-+++.||+..|..+.-.-... .... ...--...-.+..+..++++|+++||+++--- -.+..... ..+-
T Consensus 253 V~~AdVVItNPTH~AVAL~Yd--~~~~-~aP~VvAKG~d~~A~~Ir~iA~e~~VPiven~pLARaLY~~~~-----vg~~ 324 (349)
T PRK12721 253 VKKSTAVVRNPTHIAVCLYYH--PGET-PLPRVLEKGKDAQALHIVKLAERNGIPVVENIPLARALFKEVE-----CGDY 324 (349)
T ss_pred CCCCcEEEEcCCceEEEEEeC--CCCC-CCCEEEEEeCcHHHHHHHHHHHHcCCCEEeCHHHHHHHHHhCC-----CCCc
Confidence 388999999887643111000 0000 00000111123578899999999999999522 12211110 1111
Q ss_pred CCCChHHHHHHHHHHHHHHH
Q 030618 109 IHFSSEGSKIVVKEILKVLR 128 (174)
Q Consensus 109 vHpn~~Gy~~~a~~l~~~l~ 128 (174)
-.++=|+.+|+.+.-..+
T Consensus 325 --IP~ely~aVA~ILa~v~~ 342 (349)
T PRK12721 325 --IPETLFEPVAALLRMVMD 342 (349)
T ss_pred --CCHHHHHHHHHHHHHHHH
Confidence 245667777777665544
No 125
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=34.15 E-value=37 Score=28.15 Aligned_cols=24 Identities=17% Similarity=0.151 Sum_probs=19.5
Q ss_pred ccCCCCCChHHHHHHHHHHHHHHH
Q 030618 105 FMDGIHFSSEGSKIVVKEILKVLR 128 (174)
Q Consensus 105 ~~DGvHpn~~Gy~~~a~~l~~~l~ 128 (174)
..||||+-.-+...+...|++.+.
T Consensus 268 gv~GvH~yt~n~~~~~~~il~~l~ 291 (296)
T PRK09432 268 GVKDFHFYTLNRAELTYAICHTLG 291 (296)
T ss_pred CCCEEEEecCCChHHHHHHHHHhC
Confidence 478999999888888888877654
No 126
>cd07585 nitrilase_7 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=34.12 E-value=1.1e+02 Score=23.96 Aligned_cols=67 Identities=6% Similarity=0.043 Sum_probs=34.6
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCC-ChHHHHHHHHHHHHHHHHcCCeEEe
Q 030618 13 PLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGR-TNESCRIYSEACLKLCQEMDVKAID 89 (174)
Q Consensus 13 ~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~-~n~~i~~y~~~i~~lA~~~~v~~iD 89 (174)
..+.-.++++++++.+.+ .++.+|+.--..+. .+.. .. .... .......+-+.++++|+++++.++=
T Consensus 13 ~~~~n~~~i~~~i~~a~~--~gadliv~PE~~l~--g~~~---~~---~~~~~~~~~~~~~~~~l~~~a~~~~~~i~~ 80 (261)
T cd07585 13 DKARNLAVIARWTRKAAA--QGAELVCFPEMCIT--GYTH---VR---ALSREAEVPDGPSTQALSDLARRYGLTILA 80 (261)
T ss_pred CHHHHHHHHHHHHHHHHH--cCCCEEEecccccc--cccC---Cc---ccchhcccCCChHHHHHHHHHHHcCcEEEE
Confidence 345555666666666666 67888775322211 1100 00 0000 0111123566788999999988773
No 127
>cd07574 nitrilase_Rim1_like Uncharacterized subgroup of the nitrilase superfamily; some members of this subgroup have an N-terminal RimI domain (class 12 nitrilases). Some members of this subgroup are implicated in post-translational modification, as they contain an N-terminal GCN5-related N-acetyltransferase (GNAT) protein RimI family domain. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 12. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=34.08 E-value=1.8e+02 Score=23.17 Aligned_cols=72 Identities=6% Similarity=0.030 Sum_probs=36.1
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccc---cccCCChHHHHHHHHHHHHHHHHcCCeEE
Q 030618 13 PLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDF---AVWGRTNESCRIYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 13 ~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~---~~~~~~n~~i~~y~~~i~~lA~~~~v~~i 88 (174)
+.+...++++.+|+++.+ .++.+|++-= ..-..+......... ............+.+.++++|+++++.++
T Consensus 15 ~~~~n~~~i~~~i~~A~~--~gadlivfPE--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~i~iv 89 (280)
T cd07574 15 SFEEFAAKVEYWVAEAAG--YGADLLVFPE--YFTMELLSLLPEAIDGLDEAIRALAALTPDYVALFSELARKYGINII 89 (280)
T ss_pred CHHHHHHHHHHHHHHHHH--cCCCEEECch--HhHHHHHHhCCcccccHHHHHHHHHHHHHHHHHHHHHHHHHhCCEEE
Confidence 455556666677777776 5788877421 110111000000000 00001112234577888999999998776
No 128
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=34.06 E-value=2.8e+02 Score=24.65 Aligned_cols=72 Identities=6% Similarity=0.027 Sum_probs=41.8
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHH
Q 030618 2 LPHSTGLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQ 81 (174)
Q Consensus 2 ~~~~~~~~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~ 81 (174)
+|.|.++. .=++=.+.++.+|+.+++ .|+++++. ....+-..+-....++| ...+.++.|.+..+.+++
T Consensus 96 ~P~G~~~~---~N~~gl~~Y~~lid~l~~--~GI~P~vT-L~H~dlP~~L~~~yGGW-----~n~~~~~~F~~Ya~~~f~ 164 (477)
T PRK15014 96 FPKGDEAQ---PNEEGLKFYDDMFDELLK--YNIEPVIT-LSHFEMPLHLVQQYGSW-----TNRKVVDFFVRFAEVVFE 164 (477)
T ss_pred ccCCCCCC---CCHHHHHHHHHHHHHHHH--cCCEEEEE-eeCCCCCHHHHHhcCCC-----CChHHHHHHHHHHHHHHH
Confidence 57665432 244556678899999999 67888774 33333222221111222 123556777777777777
Q ss_pred HcC
Q 030618 82 EMD 84 (174)
Q Consensus 82 ~~~ 84 (174)
+++
T Consensus 165 ~fg 167 (477)
T PRK15014 165 RYK 167 (477)
T ss_pred Hhc
Confidence 775
No 129
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=33.92 E-value=78 Score=27.62 Aligned_cols=59 Identities=10% Similarity=0.187 Sum_probs=38.1
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE-ec
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI-DL 90 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i-Dl 90 (174)
+..+...-.+.++.+.+++ ...|+|+++-...... -+ | +.++++|.+-|+.++ |.
T Consensus 146 vd~et~~IDyD~~~k~a~e--~kPK~ii~G~SaY~r~-----------------id----~-~~~reIad~VGA~L~~Dm 201 (413)
T COG0112 146 VDPETGLIDYDEVEKLAKE--VKPKLIIAGGSAYSRP-----------------ID----F-KRFREIADEVGAYLMVDM 201 (413)
T ss_pred cccccCccCHHHHHHHHHH--hCCCEEEECccccccc-----------------cC----H-HHHHHHHHHhCceEEehH
Confidence 4456666778888889999 6789999876543221 11 1 134567888887766 76
Q ss_pred hHHH
Q 030618 91 WTAM 94 (174)
Q Consensus 91 ~~~~ 94 (174)
.-..
T Consensus 202 AHia 205 (413)
T COG0112 202 AHVA 205 (413)
T ss_pred HHHH
Confidence 5443
No 130
>TIGR01404 FlhB_rel_III type III secretion protein, YscU/HrpY family. This model represents one of several families of proteins related to bacterial flagellar biosynthesis proteins and involved in bacterial type III protein secretion systems. This family is homologous to, but distinguished from, flagellar biosynthetic protein FlhB (TIGRFAMs model TIGR00328). This model may not identify all type III secretion system FlhB homologs.
Probab=33.81 E-value=62 Score=27.49 Aligned_cols=53 Identities=6% Similarity=-0.034 Sum_probs=31.3
Q ss_pred CCceEEEEcCCCCChhh-hhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEe
Q 030618 33 AKTRIIFLSAPPINKQQ-IFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAID 89 (174)
Q Consensus 33 ~~~~IILitppp~~~~~-~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iD 89 (174)
+++.+|+..|..+.-.- +....... .--...-.+..+..++++|+++||+++.
T Consensus 253 ~~AdVVitNPTH~AVAL~Yd~~~~~A----P~VvAKG~d~~A~~Ir~iA~e~~VPive 306 (342)
T TIGR01404 253 KRSTLVVANPTHIAIGIYYKPGETPL----PLIICKGTDAQALAVRAYAEEAGIPVVR 306 (342)
T ss_pred CCCcEEEECCceeEEEeEECCCCCCC----CEEEEeeCcHHHHHHHHHHHHcCCCEee
Confidence 88999999887543111 11100000 0011111235888999999999999996
No 131
>PF02604 PhdYeFM_antitox: Antitoxin Phd_YefM, type II toxin-antitoxin system; InterPro: IPR006442 This entry is represented by Bacteriophage P1, prevent-host-death protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family of proteins is characterised by a region of about 55 amino acids toward the N-terminal end of bacterial proteins which are themselves only 85 amino acids, or thereabouts, in length. The best-characterised member is prevent-host-death (phd) of bacteriophage P1, the antidote partner of death-on-curing (doc) (IPR006440 from INTERPRO) in an addiction module. Addiction modules prevent plasmid curing by killing the host cell as the longer-lived killing protein persists while the gene for the shorter-lived antidote is lost. Note, however, that relatively few members of this family appear to be plasmid or phage-encoded. Also, there is little overlap, except for phage P1 itself, of species with this family and with the doc family. ; PDB: 3DBO_A 2ODK_B 3G5O_D 2A6Q_B 3D55_C 3OEI_E 3CTO_C 3K33_D 3KH2_F 3HS2_C ....
Probab=33.46 E-value=57 Score=20.51 Aligned_cols=27 Identities=15% Similarity=0.359 Sum_probs=20.8
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEE
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFL 40 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILi 40 (174)
++..++++|+..+++.+.. .+.+|+|.
T Consensus 4 vs~~e~r~~~~~~l~~v~~--~~~pv~It 30 (75)
T PF02604_consen 4 VSITEFRNNFSELLDEVEE--GEEPVIIT 30 (75)
T ss_dssp EEHHHHHHTHHHHHHHHHH--CT-EEEEE
T ss_pred ecHHHHHHHHHHHHHHHHc--CCCeEEEE
Confidence 5788999999999999999 34445554
No 132
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=33.39 E-value=70 Score=27.70 Aligned_cols=88 Identities=11% Similarity=0.047 Sum_probs=48.8
Q ss_pred CCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechH---HHhhcCCcccccccCC
Q 030618 32 SAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWT---AMQQRDDWLTTCFMDG 108 (174)
Q Consensus 32 ~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~---~~~~~~~~~~~~~~DG 108 (174)
-+++.+|+..|..+.-.-... .+. .....-...-....+..++++|+++||+++.--. .+.... -. |
T Consensus 260 V~~AdVVItNPTH~AVALkY~--~~~-~~AP~VvAKG~d~~A~~Ir~~A~e~~VPiven~pLARaLy~~~------ev-g 329 (386)
T PRK12468 260 VPKADVIVTNPTHYAVALQYN--ESK-MSAPKVLAKGAGAVALRIRELGAEHRIPLLEAPPLARALFRHS------EV-G 329 (386)
T ss_pred CCCCcEEEECCCceEEEEEeC--CCC-CCCCEEEEeeCcHHHHHHHHHHHHcCCcEEeCHHHHHHHHHhC------CC-C
Confidence 388999999887653211110 000 0000011111235888999999999999996322 222111 11 2
Q ss_pred CCCChHHHHHHHHHHHHHHHh
Q 030618 109 IHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 109 vHpn~~Gy~~~a~~l~~~l~~ 129 (174)
=--.++-|+.+|+.|.-..+-
T Consensus 330 ~~IP~ely~AVA~ILa~V~~l 350 (386)
T PRK12468 330 QHIPATLYAAVAEVLAWVYQL 350 (386)
T ss_pred CCCCHHHHHHHHHHHHHHHHH
Confidence 223677899999888766554
No 133
>PRK12772 bifunctional flagellar biosynthesis protein FliR/FlhB; Provisional
Probab=32.93 E-value=68 Score=29.49 Aligned_cols=86 Identities=10% Similarity=0.053 Sum_probs=46.6
Q ss_pred CCCceEEEEcCCCCChhh-hhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechH---HHhhcCCcccccccC
Q 030618 32 SAKTRIIFLSAPPINKQQ-IFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWT---AMQQRDDWLTTCFMD 107 (174)
Q Consensus 32 ~~~~~IILitppp~~~~~-~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~---~~~~~~~~~~~~~~D 107 (174)
-+++.+|+..|..+.=.- +.. +. .+...-...-.+..+..++++|+++|++++---. .+....+ ..|
T Consensus 516 V~~AdvVitNPTH~AVAL~Y~~---~~-~~aP~VvAKG~d~~A~~Ir~~A~e~~VPive~~~LAR~Ly~~~e-----vg~ 586 (609)
T PRK12772 516 VPKATVVVTNPTHIAVALKYEE---GK-DEAPKVVAKGADYVALKIKEIAKENDVPIIENKPLARLIYKKVE-----IDQ 586 (609)
T ss_pred CCCCcEEEECCCceEEEeEeCC---CC-CCCCEEEEeeCcHHHHHHHHHHHHCCCcEEeCHHHHHHHHHcCC-----CCC
Confidence 388999999887643211 111 00 0000011112345888999999999999996322 2211111 112
Q ss_pred CCCCChHHHHHHHHHHHHHHH
Q 030618 108 GIHFSSEGSKIVVKEILKVLR 128 (174)
Q Consensus 108 GvHpn~~Gy~~~a~~l~~~l~ 128 (174)
- -.++=|+.+|+.+.-..+
T Consensus 587 ~--IP~ely~aVA~iL~~v~~ 605 (609)
T PRK12772 587 E--IPQDMYQAVAEILAIVYK 605 (609)
T ss_pred C--CCHHHHHHHHHHHHHHHH
Confidence 2 256778888877765544
No 134
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=32.48 E-value=66 Score=22.54 Aligned_cols=26 Identities=8% Similarity=0.027 Sum_probs=21.9
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCC
Q 030618 20 NMRKIALHLKSLSAKTRIIFLSAPPI 45 (174)
Q Consensus 20 nl~~iI~~ir~~~~~~~IILitppp~ 45 (174)
...++++.+|+.+|+++|++.++.+.
T Consensus 54 ~~~~~~~~ik~~~p~~~iv~GG~~~t 79 (127)
T cd02068 54 EALELAKIAKEVLPNVIVVVGGPHAT 79 (127)
T ss_pred HHHHHHHHHHHHCCCCEEEECCcchh
Confidence 67888999999888899999888664
No 135
>PRK09108 type III secretion system protein HrcU; Validated
Probab=32.40 E-value=66 Score=27.48 Aligned_cols=89 Identities=6% Similarity=-0.043 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhhcCCcccccccC-CCC
Q 030618 32 SAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQRDDWLTTCFMD-GIH 110 (174)
Q Consensus 32 ~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~~~~~~~~~~D-GvH 110 (174)
-+++.+|+..|..+.-.-... .+. ....--...-.+..+..++++|+++||+++.--. +.. .+|..+ |=-
T Consensus 255 V~~AdvVItNPTH~AVAL~Y~--~~~-~~AP~VvAKG~d~~A~~Ir~~A~e~~VPvven~p-LAR-----aLy~~~vg~~ 325 (353)
T PRK09108 255 VARANVVVVNPTHYAVALRYA--PDE-HPLPRVIAKGVDDGALALRRHAHALGIPIVGNPP-VAR-----ALYRVELDEP 325 (353)
T ss_pred CCCCcEEEECCCceEEEeEeC--CCC-CCCCEEEEEeCcHHHHHHHHHHHHcCCCEEeCHH-HHH-----HHhcCCCCCc
Confidence 388999999887643211100 000 0000001111235888999999999999996322 221 122111 222
Q ss_pred CChHHHHHHHHHHHHHHHh
Q 030618 111 FSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 111 pn~~Gy~~~a~~l~~~l~~ 129 (174)
-.++=|+.+|+.+.-..+-
T Consensus 326 IP~ely~aVA~iL~~v~~l 344 (353)
T PRK09108 326 IPEELFETVAAILRWVDEL 344 (353)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 2456677777776655443
No 136
>PRK08185 hypothetical protein; Provisional
Probab=32.29 E-value=2.9e+02 Score=22.82 Aligned_cols=91 Identities=12% Similarity=0.128 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE---e----ch
Q 030618 19 ENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI---D----LW 91 (174)
Q Consensus 19 ~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i---D----l~ 91 (174)
+.++.+|+.+.+ .+.+|||...+-. .. ... . .+...++.+|++.++++. | +.
T Consensus 24 e~~~avi~AAee--~~sPvIl~~~~~~----~~------------~~~--~-~~~~~~~~~a~~~~vPV~lHLDHg~~~e 82 (283)
T PRK08185 24 CFLRAVVEEAEA--NNAPAIIAIHPNE----LD------------FLG--D-NFFAYVRERAKRSPVPFVIHLDHGATIE 82 (283)
T ss_pred HHHHHHHHHHHH--hCCCEEEEeCcch----hh------------hcc--H-HHHHHHHHHHHHCCCCEEEECCCCCCHH
Confidence 346777888888 5678888665421 11 011 1 266778889999999876 2 22
Q ss_pred HHHhhc-CCcccccccCCCCCChHHHHHHHHHHHHHHHhcC
Q 030618 92 TAMQQR-DDWLTTCFMDGIHFSSEGSKIVVKEILKVLREAD 131 (174)
Q Consensus 92 ~~~~~~-~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~~ 131 (174)
...... .++. ....||=|++.+-+..++..+.+...+.+
T Consensus 83 ~i~~ai~~Gf~-SVM~D~S~l~~eeNi~~t~~vv~~a~~~g 122 (283)
T PRK08185 83 DVMRAIRCGFT-SVMIDGSLLPYEENVALTKEVVELAHKVG 122 (283)
T ss_pred HHHHHHHcCCC-EEEEeCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 211111 2332 47789999999999999999998888743
No 137
>cd08778 Death_TNFRSF21 Death domain of tumor necrosis factor receptor superfamily member 21. Death domain (DD) found in tumor necrosis factor receptor superfamily member 21 (TNFRSF21), also called death receptor-6, DR6. DR6 is an orphan receptor that is expressed ubiquitously, but shows high expression in lymphoid organs, heart, brain and pancreas. Results from DR6(-/-) mice indicate that DR6 plays an important regulatory role for the generation of adaptive immunity. It may also be involved in tumor cell survival and immune evasion. In neuronal cells, it binds beta-amyloid precursor protein (APP) and activates caspase-dependent cell death. It may contribute to the pathogenesis of Alzheimer's disease. In general, DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including CARD (Caspase activation and recruitme
Probab=31.86 E-value=30 Score=22.47 Aligned_cols=55 Identities=11% Similarity=0.233 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCeEEechHHHhhcC-----CcccccccCC-------CCCChHHHHHHHHHHHHHHHh
Q 030618 75 ACLKLCQEMDVKAIDLWTAMQQRD-----DWLTTCFMDG-------IHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 75 ~i~~lA~~~~v~~iDl~~~~~~~~-----~~~~~~~~DG-------vHpn~~Gy~~~a~~l~~~l~~ 129 (174)
.++-+|.+-|...+|+|+.+.+.. .+...|..|. -|+|-.+-...+..+...+++
T Consensus 5 ilklvaaqvgsqwid~y~sla~aterevaafsngytadherayaalqhwtird~~~~~~~~~~~~rq 71 (84)
T cd08778 5 ILKLVAAQVGSQWKDIYQFLCNASEREVAAFSNGYTADHERAYAALQHWTIRGPEASLAQLISALRQ 71 (84)
T ss_pred HHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHcCCCcccHHHHHHHHHhhhccChHHHHHHHHHHHHH
Confidence 456678888999999999887642 1233456664 577777666666666666554
No 138
>PRK09593 arb 6-phospho-beta-glucosidase; Reviewed
Probab=31.83 E-value=3.3e+02 Score=24.19 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=40.7
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHH
Q 030618 2 LPHSTGLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQ 81 (174)
Q Consensus 2 ~~~~~~~~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~ 81 (174)
+|-|.++. .=++=.+.+++||+.+++ .|+++++. ....+-..+-....++| ...+.++.|.+..+-+.+
T Consensus 100 ~P~G~~~~---~N~~gl~~Y~~lId~L~~--~GI~P~VT-L~H~dlP~~L~~~~GGW-----~n~~~v~~F~~YA~~~~~ 168 (478)
T PRK09593 100 FPKGDELE---PNEAGLQFYEDIFKECHK--YGIEPLVT-ITHFDCPMHLIEEYGGW-----RNRKMVGFYERLCRTLFT 168 (478)
T ss_pred ccCCCCCC---CCHHHHHHHHHHHHHHHH--cCCEEEEE-ecccCCCHHHHhhcCCC-----CChHHHHHHHHHHHHHHH
Confidence 56554321 245556778999999999 67888774 43333322221111222 123446667766666677
Q ss_pred HcC
Q 030618 82 EMD 84 (174)
Q Consensus 82 ~~~ 84 (174)
++|
T Consensus 169 ~fg 171 (478)
T PRK09593 169 RYK 171 (478)
T ss_pred Hhc
Confidence 765
No 139
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=31.26 E-value=1.4e+02 Score=25.81 Aligned_cols=26 Identities=23% Similarity=0.257 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~ 92 (174)
..+....+.++++|++++|++|=+..
T Consensus 328 ~~i~~i~~~Lk~lA~e~~i~vi~lsq 353 (434)
T TIGR00665 328 QEVSEISRSLKALAKELNVPVIALSQ 353 (434)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 33666778899999999999997754
No 140
>PRK07773 replicative DNA helicase; Validated
Probab=31.24 E-value=1.6e+02 Score=28.30 Aligned_cols=70 Identities=13% Similarity=0.161 Sum_probs=41.2
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEec
Q 030618 11 HVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDL 90 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl 90 (174)
..+++++...++.++. + .++++|++-...+-... .....-+..+......++.+|++++|++|=+
T Consensus 309 ~~~i~~i~~~~r~~~~---~--~~~~lvvIDyLql~~~~----------~~~~~r~~ei~~isr~LK~lAkel~vpvi~l 373 (886)
T PRK07773 309 NLTVMEIRAKARRLRQ---E--ANLGLIVVDYLQLMTSG----------KKYENRQQEVSEISRHLKLLAKELEVPVVAL 373 (886)
T ss_pred CCCHHHHHHHHHHHHH---h--cCCCEEEEcchhhcCCC----------CCCCCHHHHHHHHHHHHHHHHHHHCCcEEEe
Confidence 3445555544444432 2 35777777654321100 0011223457788999999999999999977
Q ss_pred hHHHh
Q 030618 91 WTAMQ 95 (174)
Q Consensus 91 ~~~~~ 95 (174)
...-.
T Consensus 374 sQLnR 378 (886)
T PRK07773 374 SQLSR 378 (886)
T ss_pred cccCc
Confidence 65443
No 141
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=31.12 E-value=2.5e+02 Score=23.13 Aligned_cols=24 Identities=8% Similarity=0.048 Sum_probs=15.0
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCC
Q 030618 22 RKIALHLKSLSAKTRIIFLSAPPI 45 (174)
Q Consensus 22 ~~iI~~ir~~~~~~~IILitppp~ 45 (174)
+.++...+..+++..|+|++++-.
T Consensus 121 ~~~~~~~~~~~~~~~I~l~G~~Gs 144 (309)
T PRK08154 121 SGMLGAGRRAARRRRIALIGLRGA 144 (309)
T ss_pred HHHHhhhhhccCCCEEEEECCCCC
Confidence 334444555567788888887644
No 142
>PRK06904 replicative DNA helicase; Validated
Probab=30.74 E-value=1.7e+02 Score=25.89 Aligned_cols=27 Identities=19% Similarity=0.127 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechHH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWTA 93 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~~ 93 (174)
..+....+.++.+|++++|++|=+-..
T Consensus 357 ~ei~~isr~LK~lAkel~ipVi~lsQL 383 (472)
T PRK06904 357 LEIAEISRSLKALAKELKVPVVALSQL 383 (472)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEEec
Confidence 346778899999999999999977643
No 143
>PRK08156 type III secretion system protein SpaS; Validated
Probab=30.63 E-value=75 Score=27.30 Aligned_cols=88 Identities=9% Similarity=-0.015 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCCChhh-hhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechH---HHhhcCCcccccccC
Q 030618 32 SAKTRIIFLSAPPINKQQ-IFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWT---AMQQRDDWLTTCFMD 107 (174)
Q Consensus 32 ~~~~~IILitppp~~~~~-~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~---~~~~~~~~~~~~~~D 107 (174)
-+++.||+..|..+.-.- +.. +.. ....-...-.+..+..++++|+++||+++.--. .+.... -.|
T Consensus 248 Vp~AdVVItNPTH~AVALkYd~---~~~-~AP~VvAKG~d~~A~~IreiA~e~~VPiven~pLARaLY~~v------evg 317 (361)
T PRK08156 248 IRNSRLIVANPTHIAIGIYFNP---ELA-PIPFISVRETNQRALAVRAYAEKVGVPVVRDIKLARRLYKTH------RRY 317 (361)
T ss_pred CCCCcEEEECCCeEEEEEEecC---CCC-CCCEEEEecCcHHHHHHHHHHHHCCCCEeeCHHHHHHHHHhC------CCC
Confidence 388999998886643111 110 000 000011111235888999999999999996322 222111 111
Q ss_pred CCCCChHHHHHHHHHHHHHHHhc
Q 030618 108 GIHFSSEGSKIVVKEILKVLREA 130 (174)
Q Consensus 108 GvHpn~~Gy~~~a~~l~~~l~~~ 130 (174)
. =-.++=|+.+|+.+.-..+-.
T Consensus 318 ~-~IP~ely~AVA~iLa~v~~l~ 339 (361)
T PRK08156 318 S-FVSLEDLDEVLRLLIWLEQVE 339 (361)
T ss_pred C-cCCHHHHHHHHHHHHHHHHHH
Confidence 1 123455888888776665543
No 144
>PLN02998 beta-glucosidase
Probab=30.33 E-value=3.3e+02 Score=24.38 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=41.2
Q ss_pred CCCCCCCCCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHH
Q 030618 2 LPHSTGLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQ 81 (174)
Q Consensus 2 ~~~~~~~~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~ 81 (174)
+|-|.+ .+ =++-.+.++.+|+.+++ .|+++++ |....+-..+-....++| ...+.++.|.+..+.+.+
T Consensus 109 ~P~G~g---~v-N~~gl~~Y~~lid~L~~--~GIeP~V-TL~H~dlP~~L~~~yGGW-----~n~~~v~~F~~YA~~~~~ 176 (497)
T PLN02998 109 LPSGRG---PI-NPKGLQYYNNLIDELIT--HGIQPHV-TLHHFDLPQALEDEYGGW-----LSQEIVRDFTAYADTCFK 176 (497)
T ss_pred CcCCCC---Cc-CHHHHHHHHHHHHHHHH--cCCceEE-EecCCCCCHHHHHhhCCc-----CCchHHHHHHHHHHHHHH
Confidence 565543 23 44556778999999999 6788877 444444333222111222 123456667777777777
Q ss_pred HcC
Q 030618 82 EMD 84 (174)
Q Consensus 82 ~~~ 84 (174)
++|
T Consensus 177 ~fg 179 (497)
T PLN02998 177 EFG 179 (497)
T ss_pred Hhc
Confidence 764
No 145
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=30.30 E-value=1.3e+02 Score=24.99 Aligned_cols=90 Identities=12% Similarity=-0.000 Sum_probs=49.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE
Q 030618 9 GPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 9 ~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i 88 (174)
....+...|.+...+.|+.+.+ .|..+||++..-+.-...-. +. ....... ...+..+.+.+...|...
T Consensus 69 ~e~~sv~~f~~~a~~~i~~i~~--~gk~PilvGGTglYi~all~----gl-~~~p~~~---~~~r~~~~~~~~~~g~~~- 137 (300)
T PRK14729 69 IKEYNLGIFYKEALKIIKELRQ--QKKIPIFVGGSAFYFKHLKY----GL-PSTPPVS---SKIRIYVNNLFTLKGKSY- 137 (300)
T ss_pred CCceeHHHHHHHHHHHHHHHHH--CCCCEEEEeCchHHHHHHHc----CC-CCCCCCC---HHHHHHHHHHHHhcCHHH-
Confidence 4567899999999999999998 45556666655443222211 00 0011112 234444555555555322
Q ss_pred echHHHhhcCCcccccccCCCCCChH
Q 030618 89 DLWTAMQQRDDWLTTCFMDGIHFSSE 114 (174)
Q Consensus 89 Dl~~~~~~~~~~~~~~~~DGvHpn~~ 114 (174)
+|..+.... ......+|||..
T Consensus 138 -l~~~L~~~D----P~~A~~i~pnd~ 158 (300)
T PRK14729 138 -LLEELKRVD----FIRYESINKNDI 158 (300)
T ss_pred -HHHHHHhcC----HHHHhhCCcCCH
Confidence 344443221 234578999886
No 146
>PRK05748 replicative DNA helicase; Provisional
Probab=30.14 E-value=1.8e+02 Score=25.35 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechHHH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWTAM 94 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~~~ 94 (174)
..+......++++|++++|++|=+...-
T Consensus 338 ~~i~~i~~~LK~lAke~~i~vi~lsQln 365 (448)
T PRK05748 338 QEVSEISRSLKALAKELKVPVIALSQLS 365 (448)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEecccC
Confidence 4467788999999999999999776533
No 147
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=29.79 E-value=1.3e+02 Score=23.74 Aligned_cols=47 Identities=19% Similarity=0.205 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechH
Q 030618 17 YIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 17 y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~ 92 (174)
..+.+.++++.+++ .++++|+..+..-. +.++.+|++.|++++.+..
T Consensus 184 s~~~l~~l~~~ik~--~~v~~i~~e~~~~~---------------------------~~~~~la~~~g~~vv~ld~ 230 (256)
T PF01297_consen 184 SPKDLAELIKLIKE--NKVKCIFTEPQFSS---------------------------KLAEALAKETGVKVVYLDP 230 (256)
T ss_dssp -HHHHHHHHHHHHH--TT-SEEEEETTS-T---------------------------HHHHHHHHCCT-EEEESST
T ss_pred CHHHHHHHHHHhhh--cCCcEEEecCCCCh---------------------------HHHHHHHHHcCCcEEEeCC
Confidence 45678899999999 67999998763211 1334558888999877643
No 148
>PRK07004 replicative DNA helicase; Provisional
Probab=29.79 E-value=1.6e+02 Score=25.93 Aligned_cols=26 Identities=27% Similarity=0.258 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~ 92 (174)
..+....+.++.+|++++|++|=+-.
T Consensus 347 ~ei~~Isr~LK~lAkel~ipVi~lsQ 372 (460)
T PRK07004 347 TEISEISRSLKSLAKELDVPVIALSQ 372 (460)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEec
Confidence 44778889999999999999996654
No 149
>COG2845 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=29.61 E-value=2.1e+02 Score=24.45 Aligned_cols=76 Identities=17% Similarity=0.197 Sum_probs=38.6
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhh-CCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHH---HHHHHHHHH
Q 030618 7 GLGPHVPLPEYIENMRKIALHLKSL-SAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYS---EACLKLCQE 82 (174)
Q Consensus 7 ~~~~~v~l~~y~~nl~~iI~~ir~~-~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~---~~i~~lA~~ 82 (174)
++-.++...+|..--+.|-+.+.+. .+.+-|+++++ -+...+.. ++ ....-+...+.++|. ++|.++|.+
T Consensus 151 n~SSGlvr~dYfdWpk~i~~~l~~~~~~a~vVV~lGa--ND~q~~~~---gd-~~~kf~S~~W~~eY~kRvd~~l~ia~~ 224 (354)
T COG2845 151 NGSSGLVRDDYFDWPKAIPELLDKHPKPAAVVVMLGA--NDRQDFKV---GD-VYEKFRSDEWTKEYEKRVDAILKIAHT 224 (354)
T ss_pred cCCCCcccccccccHHHHHHHHHhcCCccEEEEEecC--CCHHhccc---CC-eeeecCchHHHHHHHHHHHHHHHHhcc
Confidence 3444455555555555555555553 24444444444 33322221 11 112234556667776 455666777
Q ss_pred cCCeEE
Q 030618 83 MDVKAI 88 (174)
Q Consensus 83 ~~v~~i 88 (174)
+.++++
T Consensus 225 ~~~~V~ 230 (354)
T COG2845 225 HKVPVL 230 (354)
T ss_pred cCCcEE
Confidence 777776
No 150
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=29.60 E-value=3.5e+02 Score=22.95 Aligned_cols=73 Identities=21% Similarity=0.230 Sum_probs=42.1
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEe
Q 030618 10 PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAID 89 (174)
Q Consensus 10 ~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iD 89 (174)
.+..=+.|..-++.+|..+.+.+ +..+|+++.-. +. ...+..+.+...........+.++++|.+++.+++=
T Consensus 216 ~g~~d~~y~~a~~~~v~~~~~~f-~PdlvivsaG~-D~------h~~Dpl~~~~Lt~~~~~~~~~~v~~~a~~~~~~~~~ 287 (340)
T COG0123 216 PGTGDDSYLEALEEIVLPLLEEF-KPDLVIVSAGF-DA------HRGDPLGRLNLTEEGYAKIGRAVRKLAEGYGGPVVA 287 (340)
T ss_pred CCCCcHHHHHHHHHHHHHHHHhc-CCCEEEEecCc-cc------CCCCccceeecCHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 34445789999999776555543 34555555321 10 011222333445555666677888888887777765
Q ss_pred c
Q 030618 90 L 90 (174)
Q Consensus 90 l 90 (174)
+
T Consensus 288 v 288 (340)
T COG0123 288 V 288 (340)
T ss_pred E
Confidence 4
No 151
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=29.54 E-value=2.5e+02 Score=21.19 Aligned_cols=39 Identities=21% Similarity=0.321 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHcCCeEEechHHHhhcCCcccccccCCCCCChHH
Q 030618 72 YSEACLKLCQEMDVKAIDLWTAMQQRDDWLTTCFMDGIHFSSEG 115 (174)
Q Consensus 72 y~~~i~~lA~~~~v~~iDl~~~~~~~~~~~~~~~~DGvHpn~~G 115 (174)
..+.++++|..++++++-- +.+... ..+..||||+....
T Consensus 53 ~~~~~~~~~~~~~~~l~~~-~~~~~a----~~~gad~vh~~~~~ 91 (212)
T PRK00043 53 LARALKELCRRYGVPLIVN-DRVDLA----LAVGADGVHLGQDD 91 (212)
T ss_pred HHHHHHHHHHHhCCeEEEe-ChHHHH----HHcCCCEEecCccc
Confidence 4445667888888876631 111110 12457999997654
No 152
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=29.52 E-value=1.4e+02 Score=19.82 Aligned_cols=46 Identities=11% Similarity=0.250 Sum_probs=30.2
Q ss_pred HHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechH
Q 030618 21 MRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 21 l~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~ 92 (174)
..+.++.++. ..++.+++.--. . ....+-+.++|+.++++++..++
T Consensus 13 ~~~vlkaIk~--gkakLViiA~Da--------------------~----~~~~k~i~~~c~~~~Vpv~~~~t 58 (82)
T PRK13601 13 AKQTLKAITN--CNVLQVYIAKDA--------------------E----EHVTKKIKELCEEKSIKIVYIDT 58 (82)
T ss_pred hHHHHHHHHc--CCeeEEEEeCCC--------------------C----HHHHHHHHHHHHhCCCCEEEeCC
Confidence 3556677776 568877775411 0 12445566789999999986554
No 153
>PRK12773 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=28.74 E-value=63 Score=29.85 Aligned_cols=85 Identities=2% Similarity=-0.005 Sum_probs=45.8
Q ss_pred CCCceEEEEcCCCCChhh-hhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechH---HHhhcCCcccccccC
Q 030618 32 SAKTRIIFLSAPPINKQQ-IFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWT---AMQQRDDWLTTCFMD 107 (174)
Q Consensus 32 ~~~~~IILitppp~~~~~-~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~---~~~~~~~~~~~~~~D 107 (174)
-+++.||+..|..+.=.- +....... ..-...-.+..+..++++|+++||+++---. .+..... ..+
T Consensus 552 VpkADVVITNPTHyAVALKYdp~~~~A----PiVVAKG~D~lAlrIReiAeE~gVPIVENpPLARALY~~ve-----VGq 622 (646)
T PRK12773 552 VPEADVVITNPTHFAVALEYKPGIHKA----PIVIAKGVDDFALLIIRIARENGVPTVEDRLQARGLYEEVE-----LGA 622 (646)
T ss_pred CCCCcEEEECCCceEEEEEECCCCCCC----CEEEEEeCcHHHHHHHHHHHHcCCcEEECHHHHHHHHHcCC-----CCC
Confidence 388999998887643111 11000000 0011111235888999999999999996322 2221111 112
Q ss_pred CCCCChHHHHHHHHHHHHHH
Q 030618 108 GIHFSSEGSKIVVKEILKVL 127 (174)
Q Consensus 108 GvHpn~~Gy~~~a~~l~~~l 127 (174)
- -.++=|+.+|+.|.-..
T Consensus 623 ~--IP~eLYeAVAeILa~Vy 640 (646)
T PRK12773 623 E--VPQQFYRAIATILSRLE 640 (646)
T ss_pred c--CCHHHHHHHHHHHHHHH
Confidence 2 35677888887776544
No 154
>COG2115 XylA Xylose isomerase [Carbohydrate transport and metabolism]
Probab=28.66 E-value=2.3e+02 Score=24.37 Aligned_cols=38 Identities=18% Similarity=0.281 Sum_probs=30.6
Q ss_pred CCCChHHHHHHHHHHHHHHHhh--CCCceEEEEcCCCCCh
Q 030618 10 PHVPLPEYIENMRKIALHLKSL--SAKTRIIFLSAPPINK 47 (174)
Q Consensus 10 ~~v~l~~y~~nl~~iI~~ir~~--~~~~~IILitppp~~~ 47 (174)
.+.++.++.+|+.+|++.+... ..++|+++.|.-.+.-
T Consensus 109 eG~~l~E~~~nl~~ivd~~~~kq~~sgvKLLWgTAN~Fsn 148 (438)
T COG2115 109 EGASLKEYYNNLDEIVDVLAGKQKESGVKLLWGTANLFTN 148 (438)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHhhCceeeecccccccC
Confidence 4578999999999999998874 3789999988655443
No 155
>TIGR03162 ribazole_cobC alpha-ribazole phosphatase. Members of this protein family include the known CobC protein of Salmonella and Eschichia coli species, and homologous proteins found in cobalamin biosynthesis regions in other bacteria. This protein is alpha-ribazole phosphatase (EC 3.1.3.73) and, like many phosphatases, can be closely related in sequence to other phosphatases with different functions. Close homologs excluded from this model include proteins with duplications, so this model is built in -g mode to suppress hits to those proteins.
Probab=28.57 E-value=1.7e+02 Score=21.43 Aligned_cols=34 Identities=3% Similarity=0.144 Sum_probs=25.6
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 030618 9 GPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSA 42 (174)
Q Consensus 9 ~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitp 42 (174)
..+-+.+++.+++...++.+.+..++-.|++++-
T Consensus 112 ~~gEs~~~~~~R~~~~~~~l~~~~~~~~vlvVsH 145 (177)
T TIGR03162 112 PGGESFADFYQRVSEFLEELLKAHEGDNVLIVTH 145 (177)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEC
Confidence 3456899999999999999887544556777764
No 156
>TIGR00328 flhB flagellar biosynthetic protein FlhB. FlhB and its functionally equivalent orthologs, from among a larger superfamily of proteins involved in type III protein export systems, are specifically involved in flagellar protein export. The seed members are restricted and the trusted cutoff is set high such that the proteins gathered by this model play roles specifically related to flagellar structures. Full-length homologs scoring below the trusted cutoff are involved in peptide export but not necessarily in the creation of flagella.
Probab=28.53 E-value=92 Score=26.55 Aligned_cols=88 Identities=10% Similarity=0.024 Sum_probs=46.8
Q ss_pred CCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechH---HHhhcCCcccccccCC
Q 030618 32 SAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWT---AMQQRDDWLTTCFMDG 108 (174)
Q Consensus 32 ~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~---~~~~~~~~~~~~~~DG 108 (174)
-+++.+|+..|..+.-.-... .+....+ .-...-....+..++++|+++||+++---. .+.... -..+
T Consensus 253 V~~AdVVItNPTH~AVal~Y~--~~~~~aP-~vvakG~~~~A~~I~~~A~~~~vPi~~~~~LAr~Ly~~~-----~~g~- 323 (347)
T TIGR00328 253 VPKADVVITNPTHYAVALKYD--PGKMPAP-VVVAKGVDELALKIKEIARENNVPIVENPPLARALYRQV-----EIGQ- 323 (347)
T ss_pred CCCCcEEEECCCceEEEeEeC--CCCCCCC-EEEEeeCcHHHHHHHHHHHHcCCCEEeCHHHHHHHHHcC-----CCCC-
Confidence 388999998887643211110 0000000 001111235788999999999999995322 221110 0112
Q ss_pred CCCChHHHHHHHHHHHHHHHh
Q 030618 109 IHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 109 vHpn~~Gy~~~a~~l~~~l~~ 129 (174)
=-.++-|+.+|+.+.-..+-
T Consensus 324 -~IP~~ly~aVA~il~~v~~~ 343 (347)
T TIGR00328 324 -EIPPELYKAVAEVLAYVYKL 343 (347)
T ss_pred -cCCHHHHHHHHHHHHHHHHH
Confidence 22567788888877654443
No 157
>cd01137 PsaA Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=27.83 E-value=3.3e+02 Score=22.13 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhhc
Q 030618 18 IENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQR 97 (174)
Q Consensus 18 ~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~ 97 (174)
.+.+.++++.+++ .++++|+..+.. +. +.++.+|++.|++++..
T Consensus 212 ~~~l~~l~~~ik~--~~v~~if~e~~~---------------------~~------~~~~~ia~~~gv~v~~~------- 255 (287)
T cd01137 212 PKQVATLIEQVKK--EKVPAVFVESTV---------------------ND------RLMKQVAKETGAKIGGQ------- 255 (287)
T ss_pred HHHHHHHHHHHHH--hCCCEEEEeCCC---------------------Ch------HHHHHHHHHhCCccccc-------
Confidence 6778899999999 679999876632 11 22356788888875321
Q ss_pred CCcccccccCCCCCC---hHHHHHHHHHHHHHHHh
Q 030618 98 DDWLTTCFMDGIHFS---SEGSKIVVKEILKVLRE 129 (174)
Q Consensus 98 ~~~~~~~~~DGvHpn---~~Gy~~~a~~l~~~l~~ 129 (174)
...|++... ...|.-+.+..++.|.+
T Consensus 256 ------~~~d~l~~~~~~~~~Y~~~m~~n~~~l~~ 284 (287)
T cd01137 256 ------LYTDSLSEKGGPADTYLDMMEHNLDTIVE 284 (287)
T ss_pred ------cccccCCCCCCCcCCHHHHHHHHHHHHHH
Confidence 223444321 23677776666666654
No 158
>PRK09989 hypothetical protein; Provisional
Probab=27.73 E-value=2.8e+02 Score=21.85 Aligned_cols=28 Identities=11% Similarity=-0.054 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 030618 14 LPEYIENMRKIALHLKSLSAKTRIIFLSAP 43 (174)
Q Consensus 14 l~~y~~nl~~iI~~ir~~~~~~~IILitpp 43 (174)
.+...+.+++.|+.++.. |++.|.+.++
T Consensus 80 ~~~~~~~l~~~i~~A~~l--g~~~v~v~~g 107 (258)
T PRK09989 80 EHEARADIDLALEYALAL--NCEQVHVMAG 107 (258)
T ss_pred HHHHHHHHHHHHHHHHHh--CcCEEEECcc
Confidence 456678899999999994 6877765544
No 159
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=27.57 E-value=57 Score=27.58 Aligned_cols=146 Identities=13% Similarity=0.116 Sum_probs=72.1
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE-echHHHhhcCCcc
Q 030618 23 KIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI-DLWTAMQQRDDWL 101 (174)
Q Consensus 23 ~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i-Dl~~~~~~~~~~~ 101 (174)
.+|..+....+..+|+.+.-............... ...+.-....+.. .+.+.++.+++.+..| .+..-. ..+..
T Consensus 15 nfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~-~~~~~fv~~DI~D-~~~v~~~~~~~~~D~VvhfAAES--HVDRS 90 (340)
T COG1088 15 NFVRYILNKHPDDHVVNLDKLTYAGNLENLADVED-SPRYRFVQGDICD-RELVDRLFKEYQPDAVVHFAAES--HVDRS 90 (340)
T ss_pred HHHHHHHhcCCCceEEEEecccccCCHHHHHhhhc-CCCceEEeccccC-HHHHHHHHHhcCCCeEEEechhc--ccccc
Confidence 34555666556666777664433221111000000 0011112233333 4556666776654443 332111 11110
Q ss_pred cccccCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCc----CCCCC---CCCcCCCCCCCCCCC----------------
Q 030618 102 TTCFMDGIHFSSEGSKIVVKEILKVLREADWEPSLHW----RSLPT---EFDEDSTYYPVAPDG---------------- 158 (174)
Q Consensus 102 ~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~~~~p~l~~----~~~~~---~~~~~~~~~~~~~~~---------------- 158 (174)
=.-..+=||-|--|-.-+-+++.+...+..+ --++- -.|+. .|.|.+||+|.+|=-
T Consensus 91 I~~P~~Fi~TNv~GT~~LLEaar~~~~~frf-~HISTDEVYG~l~~~~~~FtE~tp~~PsSPYSASKAasD~lVray~~T 169 (340)
T COG1088 91 IDGPAPFIQTNVVGTYTLLEAARKYWGKFRF-HHISTDEVYGDLGLDDDAFTETTPYNPSSPYSASKAASDLLVRAYVRT 169 (340)
T ss_pred ccChhhhhhcchHHHHHHHHHHHHhcccceE-EEeccccccccccCCCCCcccCCCCCCCCCcchhhhhHHHHHHHHHHH
Confidence 0123456888888888888887777643100 00111 14443 588999999999843
Q ss_pred -Ccceeec-cCcccCCC
Q 030618 159 -QSTVNVS-DTNIYGPW 173 (174)
Q Consensus 159 -~~~~~~~-~~~~~~~~ 173 (174)
...+.++ -+|-|||.
T Consensus 170 Yglp~~ItrcSNNYGPy 186 (340)
T COG1088 170 YGLPATITRCSNNYGPY 186 (340)
T ss_pred cCCceEEecCCCCcCCC
Confidence 3334443 46889996
No 160
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=27.27 E-value=1.6e+02 Score=20.10 Aligned_cols=45 Identities=7% Similarity=0.129 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEec
Q 030618 20 NMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDL 90 (174)
Q Consensus 20 nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl 90 (174)
...+.++.++. ..++.++++-- +. ....+-+.++|++++++++.+
T Consensus 20 G~~~v~kai~~--gkaklViiA~D-~~-----------------------~~~~~~i~~~c~~~~Ip~~~~ 64 (99)
T PRK01018 20 GSKRTIKAIKL--GKAKLVIVASN-CP-----------------------KDIKEDIEYYAKLSGIPVYEY 64 (99)
T ss_pred cHHHHHHHHHc--CCceEEEEeCC-CC-----------------------HHHHHHHHHHHHHcCCCEEEE
Confidence 34556666666 56777777541 00 124556678899999998775
No 161
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=27.05 E-value=2.2e+02 Score=21.30 Aligned_cols=24 Identities=8% Similarity=0.271 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEc
Q 030618 16 EYIENMRKIALHLKSLSAKTRIIFLS 41 (174)
Q Consensus 16 ~y~~nl~~iI~~ir~~~~~~~IILit 41 (174)
.+.+.+.++++.+++ .++.+|+++
T Consensus 100 ~~~~~i~~l~~~l~~--~~~~~viVs 123 (169)
T cd00544 100 AIADEIDALLAAVRN--KPGTLILVS 123 (169)
T ss_pred HHHHHHHHHHHHHHc--CCCcEEEEE
Confidence 356778889999888 567777775
No 162
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=27.01 E-value=2e+02 Score=20.60 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHcCCeEEechH
Q 030618 71 IYSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 71 ~y~~~i~~lA~~~~v~~iDl~~ 92 (174)
.....++.+.+++|+.++-+..
T Consensus 86 d~~~~~~~l~~~~gv~l~~~~~ 107 (140)
T cd03770 86 KVGLYMEILFPKKGVRFIAIND 107 (140)
T ss_pred HHHHHHHHHHhhcCcEEEEecC
Confidence 3444556666667999887653
No 163
>PRK06683 hypothetical protein; Provisional
Probab=26.92 E-value=1.7e+02 Score=19.35 Aligned_cols=21 Identities=0% Similarity=0.117 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCeEEechH
Q 030618 72 YSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 72 y~~~i~~lA~~~~v~~iDl~~ 92 (174)
..+-+.++|+.++++++.+.+
T Consensus 41 ~~~~i~~~~~~~~Vpv~~~~t 61 (82)
T PRK06683 41 LTHVIIRTALQHNIPITKVES 61 (82)
T ss_pred HHHHHHHHHHhcCCCEEEECC
Confidence 555667889999999998764
No 164
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=26.83 E-value=40 Score=21.42 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHHhhCCCceEEEEc
Q 030618 17 YIENMRKIALHLKSLSAKTRIIFLS 41 (174)
Q Consensus 17 y~~nl~~iI~~ir~~~~~~~IILit 41 (174)
+...+.++++.+++ .|+++|.++
T Consensus 59 ~t~~~~~~~~~a~~--~g~~ii~it 81 (87)
T cd04795 59 RTEELLAALEIAKE--LGIPVIAIT 81 (87)
T ss_pred CCHHHHHHHHHHHH--cCCeEEEEe
Confidence 34556677777777 567777766
No 165
>PRK09997 hydroxypyruvate isomerase; Provisional
Probab=26.63 E-value=3.2e+02 Score=21.51 Aligned_cols=26 Identities=12% Similarity=0.061 Sum_probs=19.6
Q ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEc
Q 030618 14 LPEYIENMRKIALHLKSLSAKTRIIFLS 41 (174)
Q Consensus 14 l~~y~~nl~~iI~~ir~~~~~~~IILit 41 (174)
.+...+.+++.|+.++.. |++.|.+.
T Consensus 80 ~~~~~~~~~~~i~~a~~l--ga~~i~~~ 105 (258)
T PRK09997 80 EEEFRDGVAAAIRYARAL--GNKKINCL 105 (258)
T ss_pred HHHHHHHHHHHHHHHHHh--CCCEEEEC
Confidence 456678899999999994 68766553
No 166
>PF04748 Polysacc_deac_2: Divergent polysaccharide deacetylase; InterPro: IPR006837 This is a family of uncharacterised proteins that includes YibQ.; PDB: 2QV5_A 2NLY_A.
Probab=26.59 E-value=2.6e+02 Score=21.94 Aligned_cols=58 Identities=9% Similarity=0.047 Sum_probs=35.5
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEech
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLW 91 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~ 91 (174)
.+.+...+.+++++..+++ .|.-|.++-|.|. .++...+++.++ ++.|+.++.+-
T Consensus 155 ~~~~~I~~ql~~~~~~A~~--~G~aI~Igh~~p~----------------------Tl~~L~~~~~~l-~~~gi~lVpvS 209 (213)
T PF04748_consen 155 QDEAAIRRQLDQAARIARK--QGSAIAIGHPRPE----------------------TLEALEEWLPEL-EAQGIELVPVS 209 (213)
T ss_dssp -SHHHHHHHHHHHHHHHHC--CSEEEEEEE-SCC----------------------HHHHHHHHHHHH-HHCTEEE--HH
T ss_pred CCHHHHHHHHHHHHHhhhh--cCcEEEEEcCCHH----------------------HHHHHHHHHhHH-hhCCEEEEEhH
Confidence 5678899999999999999 5677777766543 122344444333 34588888776
Q ss_pred HHH
Q 030618 92 TAM 94 (174)
Q Consensus 92 ~~~ 94 (174)
..+
T Consensus 210 ~ll 212 (213)
T PF04748_consen 210 ALL 212 (213)
T ss_dssp HH-
T ss_pred Hhh
Confidence 543
No 167
>PRK05595 replicative DNA helicase; Provisional
Probab=26.52 E-value=1.5e+02 Score=25.77 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~ 92 (174)
..+....+.++.+|++++|++|=+-.
T Consensus 334 ~~v~~is~~LK~lAke~~i~vi~lsQ 359 (444)
T PRK05595 334 QEVSEISRSIKALAKEMECPVIALSQ 359 (444)
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEeec
Confidence 44677888999999999999997754
No 168
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=26.52 E-value=2.5e+02 Score=23.51 Aligned_cols=57 Identities=12% Similarity=0.155 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE
Q 030618 16 EYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 16 ~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i 88 (174)
.+..+++.+-+.++.......++++.|.... .. ....-.+|-+.+.++|+++++.+|
T Consensus 173 ~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~-~G---------------~~~~~~~~l~~l~~l~~~~~~~li 229 (413)
T cd00610 173 ELADDLEALEEALEEHPEEVAAVIVEPIQGE-GG---------------VIVPPPGYLKALRELCRKHGILLI 229 (413)
T ss_pred hHHHHHHHHHHHHhcCCCCEEEEEEccccCC-CC---------------CccCCHHHHHHHHHHHHHcCCEEE
Confidence 3455666665555542124567777763211 00 001113477788899999998765
No 169
>PRK06321 replicative DNA helicase; Provisional
Probab=26.50 E-value=2.2e+02 Score=25.22 Aligned_cols=26 Identities=15% Similarity=0.144 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechH
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~ 92 (174)
..+......++.+|++++|++|=+-.
T Consensus 362 ~ei~~Isr~LK~lAkel~vpVi~lsQ 387 (472)
T PRK06321 362 TEISEISRMLKNLARELNIPILCLSQ 387 (472)
T ss_pred HHHHHHHHHHHHHHHHhCCcEEEEee
Confidence 45777889999999999999996544
No 170
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=26.39 E-value=4.6e+02 Score=23.51 Aligned_cols=61 Identities=25% Similarity=0.373 Sum_probs=39.3
Q ss_pred CCCCCCChHHHHHHHHHHHHHHHhhCCCceEEEE-cCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCC
Q 030618 7 GLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFL-SAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDV 85 (174)
Q Consensus 7 ~~~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILi-tppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v 85 (174)
|....++.+.|.+.=++.|+.+++.+ ..=|||+ +.-|... +-.+...++.++|++
T Consensus 155 GSi~dipRe~Y~eAEervI~ELk~ig-KPFvillNs~~P~s~-----------------------et~~L~~eL~ekY~v 210 (492)
T PF09547_consen 155 GSITDIPRENYVEAEERVIEELKEIG-KPFVILLNSTKPYSE-----------------------ETQELAEELEEKYDV 210 (492)
T ss_pred CCccCCChHHHHHHHHHHHHHHHHhC-CCEEEEEeCCCCCCH-----------------------HHHHHHHHHHHHhCC
Confidence 34467899999999999999999964 2223333 3322221 122233466788898
Q ss_pred eEEech
Q 030618 86 KAIDLW 91 (174)
Q Consensus 86 ~~iDl~ 91 (174)
+++.+.
T Consensus 211 pVlpvn 216 (492)
T PF09547_consen 211 PVLPVN 216 (492)
T ss_pred cEEEee
Confidence 888654
No 171
>PRK13015 3-dehydroquinate dehydratase; Reviewed
Probab=26.39 E-value=1.7e+02 Score=21.88 Aligned_cols=89 Identities=15% Similarity=0.147 Sum_probs=55.7
Q ss_pred ceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhhc-CCc-c-cccccCCCCC
Q 030618 35 TRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQR-DDW-L-TTCFMDGIHF 111 (174)
Q Consensus 35 ~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~-~~~-~-~~~~~DGvHp 111 (174)
.+|+++--|-++.-..+. ...+. ...+++..+.+++.|++.++.+-=+++--... -++ . ..-..|||=.
T Consensus 2 ~~ilvinGPNLN~LG~RE-------p~iYG-~~tl~~i~~~~~~~a~~~g~~~~~~QSN~EGelId~i~~a~~~~dgiII 73 (146)
T PRK13015 2 GKILVLNGPNLNLLGTRE-------PAIYG-HETLADVEALCRAAAEALGLEVEFRQSNHEGELIDWIHEARGDVAGIVI 73 (146)
T ss_pred CEEEEEeCCCccccCCCC-------CCcCC-CCCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHHhhhcCCEEEE
Confidence 357777777666433221 11122 23467788999999999998754433322111 011 1 1123699999
Q ss_pred ChHHHHHHHHHHHHHHHhcC
Q 030618 112 SSEGSKIVVKEILKVLREAD 131 (174)
Q Consensus 112 n~~Gy~~~a~~l~~~l~~~~ 131 (174)
|+.||.--.-.|.++|+...
T Consensus 74 Npga~THtSiAl~DAl~~~~ 93 (146)
T PRK13015 74 NPGAYTHTSVAIRDALAALE 93 (146)
T ss_pred cchHHhhhHHHHHHHHHcCC
Confidence 99999999999999998753
No 172
>TIGR00789 flhB_rel flhB C-terminus-related protein. This model describes a short protein (80-93 residues) homologous to the C-terminus of the flagellar biosynthetic protein FlhB. It is found so far only in species that also have FlhB. In a phylogenetic tree based on alignment of both this family and the homologous region of FlhB and its homologs, the members of this family form a monophyletic set.
Probab=26.32 E-value=78 Score=21.08 Aligned_cols=50 Identities=6% Similarity=-0.039 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCeEEechHHHhhcCCcccccc-cCCCCCChHHHHHHHHHHHHH
Q 030618 71 IYSEACLKLCQEMDVKAIDLWTAMQQRDDWLTTCF-MDGIHFSSEGSKIVVKEILKV 126 (174)
Q Consensus 71 ~y~~~i~~lA~~~~v~~iDl~~~~~~~~~~~~~~~-~DGvHpn~~Gy~~~a~~l~~~ 126 (174)
..++.++++|+++|++++---. +... ++. .=|=--.++-|+.+|+.+.-.
T Consensus 27 ~~A~~I~~~A~e~~VPi~~~~~-LAr~-----L~~~~ig~~IP~~ly~aVAeil~~v 77 (82)
T TIGR00789 27 EVAERIIEIAKKHGIPIVEDPD-LVDV-----LLKLDLDDEIPEELYEVVAEIFAFL 77 (82)
T ss_pred HHHHHHHHHHHHcCCCEEeCHH-HHHH-----HHhCCCCCccCHHHHHHHHHHHHHH
Confidence 4788899999999999995322 2211 111 113334456778777766543
No 173
>PF02283 CobU: Cobinamide kinase / cobinamide phosphate guanyltransferase; InterPro: IPR003203 This family is composed of a group of bifunctional cobalbumin biosynthesis enzymes which display cobinamide kinase and cobinamide phosphate guanyltransferase activity. The crystal structure of the enzyme reveals the molecule to be a trimer with a propeller-like shape [].; GO: 0000166 nucleotide binding, 0043752 adenosylcobinamide kinase activity, 0051188 cofactor biosynthetic process; PDB: 1CBU_C 1C9K_B.
Probab=26.06 E-value=2.4e+02 Score=21.15 Aligned_cols=27 Identities=11% Similarity=0.342 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 030618 14 LPEYIENMRKIALHLKSLSAKTRIIFLSA 42 (174)
Q Consensus 14 l~~y~~nl~~iI~~ir~~~~~~~IILitp 42 (174)
.+...+.+.++++.+++ ....+|+++.
T Consensus 96 ~~~~~~~i~~~l~~l~~--~~~~lViVsn 122 (167)
T PF02283_consen 96 EEDILEEIERLLEALRE--RNADLVIVSN 122 (167)
T ss_dssp HHHHHHHHHHHHHHHHH----SEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHc--cCCCEEEEEc
Confidence 45677888999999988 5678888764
No 174
>TIGR00695 uxuA mannonate dehydratase. This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.
Probab=26.03 E-value=3.6e+02 Score=23.55 Aligned_cols=58 Identities=17% Similarity=0.153 Sum_probs=39.0
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEe
Q 030618 20 NMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAID 89 (174)
Q Consensus 20 nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iD 89 (174)
.|.++-+.+.+ .|-..-++...|+.+.. +. ......+.|+.|.+.|+.+|+. ||++|=
T Consensus 44 ~i~~~k~~ie~--~GL~~~vvEs~pv~e~I-k~--------g~~~rd~~Ienyk~~irNla~~-GI~vic 101 (394)
T TIGR00695 44 EIRKRKEYIES--AGLHWSVVESVPVHEAI-KT--------GTGNYGRWIENYKQTLRNLAQC-GIKTVC 101 (394)
T ss_pred HHHHHHHHHHH--cCCeEEEEeCCCccHHH-Hc--------CCCcHHHHHHHHHHHHHHHHHc-CCCEEE
Confidence 35556666666 56777777776666432 21 1234567799999999998876 888774
No 175
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=26.03 E-value=2.3e+02 Score=21.24 Aligned_cols=26 Identities=12% Similarity=0.264 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 030618 15 PEYIENMRKIALHLKSLSAKTRIIFLSA 42 (174)
Q Consensus 15 ~~y~~nl~~iI~~ir~~~~~~~IILitp 42 (174)
+.+...+.++++.+++ .++.+|+++-
T Consensus 99 ~~~~~~l~~li~~L~~--~~~tvVlVs~ 124 (170)
T PRK05800 99 EAIAAEIDALLAALQQ--LPAKIILVTN 124 (170)
T ss_pred HHHHHHHHHHHHHHHc--CCCCEEEEEc
Confidence 4456677888888888 5677777763
No 176
>cd01422 MGS Methylglyoxal synthase catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The first part of the catalytic mechanism is believed to be similar to TIM (triosephosphate isomerase) in that both enzymes utilize DHAP to form an ene-diolate phosphate intermediate. In MGS, the second catalytic step is characterized by the elimination of phosphate and collapse of the enediolate to form methylglyoxal instead of reprotonation to form the isomer glyceraldehyde 3-phosphate, as in TIM. This is the first reaction in the methylglyoxal bypass of the Embden-Myerhoff glycolytic pathway and is believed to provide physiological benefits under non-ideal growth conditions in bacteria.
Probab=25.87 E-value=1.8e+02 Score=20.37 Aligned_cols=46 Identities=15% Similarity=0.306 Sum_probs=28.7
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE
Q 030618 22 RKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 22 ~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i 88 (174)
..+++.+++ ..+..|+-+|.+..... .. .-...+++.|.+++++++
T Consensus 60 ~~i~~~i~~--g~i~~VInt~~~~~~~~---------------~~----~dg~~iRr~a~~~~Ip~~ 105 (115)
T cd01422 60 QQIGALIAE--GEIDAVIFFRDPLTAQP---------------HE----PDVKALLRLCDVYNIPLA 105 (115)
T ss_pred hHHHHHHHc--CceeEEEEcCCCCCCCc---------------cc----ccHHHHHHHHHHcCCCEE
Confidence 456677776 56777777765422111 00 123468888999999998
No 177
>cd07584 nitrilase_6 Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=25.78 E-value=1.6e+02 Score=23.14 Aligned_cols=18 Identities=17% Similarity=0.152 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHcCCeEE
Q 030618 71 IYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 71 ~y~~~i~~lA~~~~v~~i 88 (174)
.+.+.++++|+++++.++
T Consensus 65 ~~~~~l~~~a~~~~i~i~ 82 (258)
T cd07584 65 PTVRLFSELAKELGVYIV 82 (258)
T ss_pred cHHHHHHHHHHHcCeEEE
Confidence 356778899999987665
No 178
>PRK15004 alpha-ribazole phosphatase; Provisional
Probab=25.63 E-value=1.7e+02 Score=22.14 Aligned_cols=34 Identities=6% Similarity=0.198 Sum_probs=26.4
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 030618 10 PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAP 43 (174)
Q Consensus 10 ~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitpp 43 (174)
.+-+..++.+++..+++.+.+..++-.|++++-.
T Consensus 117 ~gEs~~~~~~Rv~~~l~~l~~~~~~~~iliVsHg 150 (199)
T PRK15004 117 NGEGFQAFSQRVERFIARLSAFQHYQNLLIVSHQ 150 (199)
T ss_pred CCcCHHHHHHHHHHHHHHHHHhCCCCeEEEEcCh
Confidence 4568899999999999999876555667777653
No 179
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=25.32 E-value=2.5e+02 Score=23.40 Aligned_cols=80 Identities=14% Similarity=0.120 Sum_probs=46.5
Q ss_pred CCChHHHHHHHHHHHHHHHhhCCCceEEEEcCC------------CCChhhhhhh-----hcccc-ccccCCChHHHHHH
Q 030618 11 HVPLPEYIENMRKIALHLKSLSAKTRIIFLSAP------------PINKQQIFES-----HLSTD-FAVWGRTNESCRIY 72 (174)
Q Consensus 11 ~v~l~~y~~nl~~iI~~ir~~~~~~~IILitpp------------p~~~~~~~~~-----~~~~~-~~~~~~~n~~i~~y 72 (174)
.+.-+++...++++++.+++ .|+++++---. ++........ ..... ..........++.|
T Consensus 74 ~~~~d~~i~~~~~l~~~vh~--~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~ 151 (338)
T cd04733 74 VLESGEDLEAFREWAAAAKA--NGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRF 151 (338)
T ss_pred ccCCHHHHHHHHHHHHHHHh--cCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHH
Confidence 34567899999999999999 67887763111 0000000000 00000 00112345667788
Q ss_pred HHHHHHHHHHcCCeEEechHH
Q 030618 73 SEACLKLCQEMDVKAIDLWTA 93 (174)
Q Consensus 73 ~~~i~~lA~~~~v~~iDl~~~ 93 (174)
.++.+. |++.|+..|+++..
T Consensus 152 ~~aA~r-a~~aGfDgVeih~a 171 (338)
T cd04733 152 AHAARL-AQEAGFDGVQIHAA 171 (338)
T ss_pred HHHHHH-HHHcCCCEEEEchh
Confidence 877754 67789999999865
No 180
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=25.26 E-value=2.9e+02 Score=20.61 Aligned_cols=62 Identities=6% Similarity=0.095 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEech
Q 030618 20 NMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLW 91 (174)
Q Consensus 20 nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~ 91 (174)
.....++.+++..++.+|++.-.--...... ......+..+++.+.+.++++++++.=||+.
T Consensus 50 ~~~~~i~~l~~~~~g~kv~~sigg~~~~~~~----------~~~~~~~~~~~f~~~~~~~v~~~~~DGidiD 111 (210)
T cd00598 50 PLKGALEELASKKPGLKVLISIGGWTDSSPF----------TLASDPASRAAFANSLVSFLKTYGFDGVDID 111 (210)
T ss_pred HHHHHHHHHHHhCCCCEEEEEEcCCCCCCCc----------hhhcCHHHHHHHHHHHHHHHHHcCCCceEEe
Confidence 3445556666654688888754321111000 0123344567788899999999998888874
No 181
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=25.25 E-value=2.7e+02 Score=25.54 Aligned_cols=71 Identities=10% Similarity=0.083 Sum_probs=42.8
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcC-CCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhh
Q 030618 18 IENMRKIALHLKSLSAKTRIIFLSA-PPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQ 96 (174)
Q Consensus 18 ~~nl~~iI~~ir~~~~~~~IILitp-pp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~ 96 (174)
..||++=|+.++. -+.++|+..- ++.+ ..+ =-+.+++.|++.|+.+. +-+.+
T Consensus 387 ~~NL~~Hi~n~~~--fg~pvVVaiN~F~~D------------------t~~----Ei~~l~~~~~~~g~~~~-v~~~w-- 439 (587)
T PRK13507 387 CANLLHHIGTVKK--SGINPVVCINAFYTD------------------THA----EIAIVRRLAEQAGARVA-VSRHW-- 439 (587)
T ss_pred HHHHHHHHHHHHH--cCCCeEEEeCCCCCC------------------CHH----HHHHHHHHHHHcCCCEE-Eechh--
Confidence 3667777777777 3576666432 2211 112 23456677888888766 33333
Q ss_pred cCCcccccccCCCCCChHHHHHHHHHHHHHHH
Q 030618 97 RDDWLTTCFMDGIHFSSEGSKIVVKEILKVLR 128 (174)
Q Consensus 97 ~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~ 128 (174)
.+| .+|-..+|+++.+.++
T Consensus 440 ---------a~G----GeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 440 ---------EKG----GEGALELADAVIDACN 458 (587)
T ss_pred ---------hcc----chhHHHHHHHHHHHhh
Confidence 222 3788999999987766
No 182
>PRK06524 biotin carboxylase-like protein; Validated
Probab=25.19 E-value=1.4e+02 Score=26.91 Aligned_cols=30 Identities=17% Similarity=0.412 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEcCCCCC
Q 030618 15 PEYIENMRKIALHLKSLSAKTRIIFLSAPPIN 46 (174)
Q Consensus 15 ~~y~~nl~~iI~~ir~~~~~~~IILitppp~~ 46 (174)
....+++..|-..++. ...+|..+++.+++
T Consensus 13 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 42 (493)
T PRK06524 13 RRVLNGLSDIRAFFHN--NTVPLYFISPTPFN 42 (493)
T ss_pred cccccCHHHHHHHHhc--CCCceEEecCCCcc
Confidence 3446677777777777 66889999998865
No 183
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=24.89 E-value=2.6e+02 Score=24.38 Aligned_cols=23 Identities=9% Similarity=0.265 Sum_probs=13.1
Q ss_pred HHHHHHHHHhhCCCceEEEEcCC
Q 030618 21 MRKIALHLKSLSAKTRIIFLSAP 43 (174)
Q Consensus 21 l~~iI~~ir~~~~~~~IILitpp 43 (174)
+++.++.+++.+.+++.|+++.|
T Consensus 187 le~a~~~a~~~~~~vk~lll~nP 209 (447)
T PLN02607 187 LEAAYQEAEAANIRVRGVLITNP 209 (447)
T ss_pred HHHHHHHHHHhCCCeeEEEEeCC
Confidence 44455555554456777777644
No 184
>PF03786 UxuA: D-mannonate dehydratase (UxuA); InterPro: IPR004628 This Fe2+-requiring enzyme plays a role in D-glucuronate catabolism in Escherichia coli. Mannonate dehydratase converts D-mannonate to 2-dehydro-3-deoxy-D-gluconate. An apparent equivalog is found in a glucuronate utilization operon in Bacillus stearothermophilus T-6.; GO: 0008927 mannonate dehydratase activity, 0006064 glucuronate catabolic process; PDB: 1TZ9_A 3FVM_A 3BDK_B 3BAN_B 3DBN_B.
Probab=24.87 E-value=2.8e+02 Score=23.78 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEec
Q 030618 18 IENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDL 90 (174)
Q Consensus 18 ~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl 90 (174)
.+.|+++.+.+.+ .|.+.-++...|+.+.... ......+.++.|.+.|+.+|+. ||++|=.
T Consensus 44 ~e~i~~~k~~ie~--~GL~~~vIEsvpv~e~Ikl---------G~~~RD~~Ieny~~~Irnlg~~-GI~vvcY 104 (351)
T PF03786_consen 44 YEEIRALKERIEA--AGLTLSVIESVPVHEDIKL---------GLPGRDEEIENYKQTIRNLGKA-GIKVVCY 104 (351)
T ss_dssp HHHHHHHHHHHHC--TT-EEEEEES----HHHHC---------T-TTHHHHHHHHHHHHHHHHHT-T--EEEE
T ss_pred HHHHHHHHHHHHH--cCCeEEEEecCChHHHHhc---------CCCcHHHHHHHHHHHHHHHHhc-CCCEEEE
Confidence 3456777777777 6788888887666543211 1234567799999999998876 8887743
No 185
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=24.71 E-value=4e+02 Score=21.95 Aligned_cols=107 Identities=13% Similarity=0.042 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhh-hhhh--hcccccc--ccCCChHHHHHHHHHHHHHHHHcCCeEEechHH
Q 030618 19 ENMRKIALHLKSLSAKTRIIFLSAPPINKQQ-IFES--HLSTDFA--VWGRTNESCRIYSEACLKLCQEMDVKAIDLWTA 93 (174)
Q Consensus 19 ~nl~~iI~~ir~~~~~~~IILitppp~~~~~-~~~~--~~~~~~~--~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~ 93 (174)
...+.++..+..+++++.+.+..-|.++... .... ......+ ...-.+ .+.++.+++.|+++|++++|+...
T Consensus 16 eTAe~v~~A~l~QF~~~~~~~~~~p~v~~~~~~~~i~~~~~~~~~iV~~Tlv~---~elr~~l~~~~~~~~i~~vdll~p 92 (269)
T PRK05339 16 ETAETVGRAALSQFPNVEFEEHRYPFVRTEEKADEVLEEINAERPIVFYTLVD---PELREILEERCAEFGIPCIDILGP 92 (269)
T ss_pred HHHHHHHHHHHHhCCCCCeeEEEeCCcCCHHHHHHHHHHHHhcCCEEEEeCCC---HHHHHHHHHHHHHcCCCEEeccHH
Confidence 3445666667777777766655555555332 1110 0000000 112223 357788889999999999999998
Q ss_pred HhhcC----CcccccccCCCCCChHHHHHHHHHHHHHHH
Q 030618 94 MQQRD----DWLTTCFMDGIHFSSEGSKIVVKEILKVLR 128 (174)
Q Consensus 94 ~~~~~----~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~ 128 (174)
+.+.- +.......-..|--.+-|-.--++|-=.++
T Consensus 93 ~i~~le~~lg~~p~~~pG~~~~ld~~Yf~RIeAiefal~ 131 (269)
T PRK05339 93 LIAPLEQELGLKPTPEPGRTHGLDEEYFKRIEAIEFALA 131 (269)
T ss_pred HHHHHHHHHCcCCCCCCCcccCCcHHHHHHHHHHHHHHH
Confidence 87541 222233344555555666666666655554
No 186
>cd07578 nitrilase_1_R1 First nitrilase domain of an uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). Members of this subgroup have two nitrilase domains. This is the first of those two domains. The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.
Probab=24.45 E-value=2.8e+02 Score=21.76 Aligned_cols=17 Identities=18% Similarity=0.225 Sum_probs=13.6
Q ss_pred HHHHHHHHHHHcCCeEE
Q 030618 72 YSEACLKLCQEMDVKAI 88 (174)
Q Consensus 72 y~~~i~~lA~~~~v~~i 88 (174)
+.+.+.++|+++++.++
T Consensus 66 ~~~~l~~~a~~~~i~ii 82 (258)
T cd07578 66 TTARFAELAREHDCYIV 82 (258)
T ss_pred HHHHHHHHHHHcCcEEE
Confidence 56678889999988766
No 187
>PRK05702 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=24.01 E-value=1.2e+02 Score=25.91 Aligned_cols=90 Identities=11% Similarity=0.037 Sum_probs=45.7
Q ss_pred CCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhhcCCcccccccCCCCC
Q 030618 32 SAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQRDDWLTTCFMDGIHF 111 (174)
Q Consensus 32 ~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~~~~~~~~~~DGvHp 111 (174)
-+++.+|+..|..+.-..... .+....+ .-...-....+..++++|+++||+++.--..-...-. ..-. |==-
T Consensus 260 V~~AdVVItNPTH~AVal~Y~--~~~~~aP-~vvakg~~~~A~~i~~~A~~~~vpi~~~~~LAr~Ly~---~~~~-g~~I 332 (359)
T PRK05702 260 VPKADVVITNPTHYAVALKYD--RGKMAAP-VVVAKGVDEVALKIREIAREHNVPIVENPPLARALYA---TVEI-GQEI 332 (359)
T ss_pred CCCCcEEEECCCceEEEeEeC--CCCCCCC-EEEEeeCcHHHHHHHHHHHHcCCCEEeCHHHHHHHHH---cCCC-CCcc
Confidence 378999998887653211110 0000000 0011112357888999999999999963222111000 0011 1123
Q ss_pred ChHHHHHHHHHHHHHHH
Q 030618 112 SSEGSKIVVKEILKVLR 128 (174)
Q Consensus 112 n~~Gy~~~a~~l~~~l~ 128 (174)
.++=|+.+|+.+.-..+
T Consensus 333 p~~~~~aVA~il~~v~~ 349 (359)
T PRK05702 333 PEELYKAVAEVLAYVYQ 349 (359)
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 56677888777654433
No 188
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=23.91 E-value=1.5e+02 Score=20.91 Aligned_cols=21 Identities=10% Similarity=0.085 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHcCCeEEechH
Q 030618 72 YSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 72 y~~~i~~lA~~~~v~~iDl~~ 92 (174)
..+.++++|++.|++++-...
T Consensus 27 a~~~l~~lae~~~~Pv~~t~~ 47 (137)
T PF00205_consen 27 AAEELRELAEKLGIPVATTPM 47 (137)
T ss_dssp CHHHHHHHHHHHTSEEEEEGG
T ss_pred HHHHHHHHHHHHCCCEEecCc
Confidence 446677889999999987653
No 189
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=23.77 E-value=53 Score=26.54 Aligned_cols=21 Identities=33% Similarity=0.434 Sum_probs=15.3
Q ss_pred ccCCCCCChHHHHHHHHHHHH
Q 030618 105 FMDGIHFSSEGSKIVVKEILK 125 (174)
Q Consensus 105 ~~DGvHpn~~Gy~~~a~~l~~ 125 (174)
..+|+|+-.-+....+..|++
T Consensus 252 ~~~giH~~t~n~~~~~~~il~ 272 (274)
T cd00537 252 GVPGIHFYTLNREEATAEILE 272 (274)
T ss_pred CCCEEEEcCCCChHHHHHHHh
Confidence 478999998777766655554
No 190
>PF00232 Glyco_hydro_1: Glycosyl hydrolase family 1; InterPro: IPR001360 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 1 GH1 from CAZY comprises enzymes with a number of known activities; beta-glucosidase (3.2.1.21 from EC); beta-galactosidase (3.2.1.23 from EC); 6-phospho-beta-galactosidase (3.2.1.85 from EC); 6-phospho-beta-glucosidase (3.2.1.86 from EC); lactase-phlorizin hydrolase (3.2.1.62 from EC), (3.2.1.108 from EC); beta-mannosidase (3.2.1.25 from EC); myrosinase (3.2.1.147 from EC). ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1QVB_A 3AHY_D 2E9L_A 2ZOX_A 2JFE_X 2E9M_A 3FIZ_A 3FIY_A 3CMJ_A 3FJ0_A ....
Probab=23.32 E-value=4.3e+02 Score=23.11 Aligned_cols=64 Identities=9% Similarity=-0.015 Sum_probs=37.6
Q ss_pred CChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcC
Q 030618 12 VPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMD 84 (174)
Q Consensus 12 v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~ 84 (174)
..=++-.+.+++||+.+++ .|+++++.-- ..+-..+... .++| ...+.++.|.+..+.++++++
T Consensus 92 ~~n~~~~~~Y~~~i~~l~~--~gi~P~vtL~-H~~~P~~l~~-~ggw-----~~~~~~~~F~~Ya~~~~~~~g 155 (455)
T PF00232_consen 92 KVNEEGLDFYRDLIDELLE--NGIEPIVTLY-HFDLPLWLED-YGGW-----LNRETVDWFARYAEFVFERFG 155 (455)
T ss_dssp SS-HHHHHHHHHHHHHHHH--TT-EEEEEEE-SS--BHHHHH-HTGG-----GSTHHHHHHHHHHHHHHHHHT
T ss_pred ccCHhHhhhhHHHHHHHHh--hccceeeeee-ecccccceee-cccc-----cCHHHHHHHHHHHHHHHHHhC
Confidence 3445566778999999999 6798887542 2222222211 1221 234567778877788888886
No 191
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=23.25 E-value=2.1e+02 Score=22.57 Aligned_cols=23 Identities=4% Similarity=-0.145 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHcCCeEEech
Q 030618 69 CRIYSEACLKLCQEMDVKAIDLW 91 (174)
Q Consensus 69 i~~y~~~i~~lA~~~~v~~iDl~ 91 (174)
+..+...++++|++++++++=+.
T Consensus 166 ~~~~~~~L~~la~~~~vtvll~s 188 (271)
T cd01122 166 LDEIMTKLRGFATEHGIHITLVS 188 (271)
T ss_pred HHHHHHHHHHHHHHhCCEEEEEe
Confidence 45666789999999999988664
No 192
>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed
Probab=22.98 E-value=3.9e+02 Score=21.20 Aligned_cols=26 Identities=27% Similarity=0.299 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 030618 15 PEYIENMRKIALHLKSLSAKTRIIFLSA 42 (174)
Q Consensus 15 ~~y~~nl~~iI~~ir~~~~~~~IILitp 42 (174)
+...+.+++.|+.++. -|++.|.+..
T Consensus 95 ~~~~~~~~~~i~~a~~--lG~~~i~~~~ 120 (283)
T PRK13209 95 AQALEIMRKAIQLAQD--LGIRVIQLAG 120 (283)
T ss_pred HHHHHHHHHHHHHHHH--cCCCEEEECC
Confidence 4566678888899998 4677776643
No 193
>PF06057 VirJ: Bacterial virulence protein (VirJ); InterPro: IPR010333 This entry contains several bacterial VirJ virulence proteins. VirJ is thought to be involved in the type IV secretion system. It is thought that the substrate proteins localised to the periplasm may associate with the pilus in a manner that is mediated by VirJ, and suggest a two-step process for type IV secretion in Agrobacterium [].
Probab=22.94 E-value=1.3e+02 Score=23.46 Aligned_cols=33 Identities=9% Similarity=0.251 Sum_probs=28.6
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 030618 10 PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSA 42 (174)
Q Consensus 10 ~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitp 42 (174)
...++++....+.++|+..+++...-+++|++-
T Consensus 43 ~~rtP~~~a~Dl~~~i~~y~~~w~~~~vvLiGY 75 (192)
T PF06057_consen 43 SERTPEQTAADLARIIRHYRARWGRKRVVLIGY 75 (192)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhCCceEEEEee
Confidence 567899999999999999999877778888774
No 194
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=22.39 E-value=1.8e+02 Score=24.23 Aligned_cols=25 Identities=24% Similarity=0.394 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCeEE--echHHHh
Q 030618 71 IYSEACLKLCQEMDVKAI--DLWTAMQ 95 (174)
Q Consensus 71 ~y~~~i~~lA~~~~v~~i--Dl~~~~~ 95 (174)
.|-+.++++|+++|+.+| .+++.+.
T Consensus 198 ~~l~~l~~lc~~~gillI~DEV~tG~g 224 (339)
T PF00202_consen 198 EYLRELRELCREHGILLIADEVQTGFG 224 (339)
T ss_dssp THHHHHHHHHHHTT-EEEEEETTTTTT
T ss_pred chhhehcccccccccceeccccccccc
Confidence 488899999999999999 3666553
No 195
>TIGR01088 aroQ 3-dehydroquinate dehydratase, type II. This model specifies the type II enzyme. The type I enzyme, often found as part of a multifunctional protein, is described by TIGR01093.
Probab=22.27 E-value=2e+02 Score=21.35 Aligned_cols=65 Identities=11% Similarity=0.039 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechHHHhhc-CCc-cc-ccccCCCCCChHHHHHHHHHHHHHHHhcC
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWTAMQQR-DDW-LT-TCFMDGIHFSSEGSKIVVKEILKVLREAD 131 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~-~~~-~~-~~~~DGvHpn~~Gy~~~a~~l~~~l~~~~ 131 (174)
..+++..+.+++.|++.|+.+-=+++--... -++ .. .-..|||=.|+.||.--.-.|.++|...+
T Consensus 24 ~tl~di~~~~~~~a~~~g~~v~~~QSN~EGelId~i~~a~~~~dgiIINpga~THtSiAl~DAl~~~~ 91 (141)
T TIGR01088 24 QTLEEIVEIIETFAAQLNVELEFFQSNSEGQLIDKIHEAEGQYDGIIINPGALTHTSVALRDALAAVS 91 (141)
T ss_pred CCHHHHHHHHHHHHHHcCCEEEEEeeCcHHHHHHHHHhccccCCEEEEcChHHhhhHHHHHHHHHcCC
Confidence 3467788999999999998754433322111 011 11 11269999999999999999999998753
No 196
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=22.24 E-value=3.6e+02 Score=20.50 Aligned_cols=23 Identities=13% Similarity=0.068 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHcCCeEEech
Q 030618 69 CRIYSEACLKLCQEMDVKAIDLW 91 (174)
Q Consensus 69 i~~y~~~i~~lA~~~~v~~iDl~ 91 (174)
+.+....++++|+++++.+|=+.
T Consensus 144 l~~~~~~L~~~a~~~~~~vi~tn 166 (226)
T cd01393 144 LSQALRKLLRLADKFNVAVVFTN 166 (226)
T ss_pred HHHHHHHHHHHHHHhCcEEEEEE
Confidence 45566778999999999998543
No 197
>cd07573 CPA N-carbamoylputrescine amidohydrolase (CPA) (class 11 nitrilases). CPA (EC 3.5.1.53, also known as N-carbamoylputrescine amidase and carbamoylputrescine hydrolase) converts N-carbamoylputrescine to putrescine, a step in polyamine biosynthesis in plants and bacteria. This subgroup includes Arabidopsis thaliana CPA, also known as nitrilase-like 1 (NLP1), and Pseudomonas aeruginosa AguB. This subgroup belongs to a larger nitrilase superfamily comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13), this subgroup corresponds to class 11. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer; P. aeruginosa AugB is a homohexamer, Arabidopsis thaliana NLP1 is a homooctomer.
Probab=22.17 E-value=2.2e+02 Score=22.67 Aligned_cols=18 Identities=17% Similarity=0.084 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHcCCeEE
Q 030618 71 IYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 71 ~y~~~i~~lA~~~~v~~i 88 (174)
.+.+.++++|+++++.++
T Consensus 66 ~~~~~l~~la~~~~i~iv 83 (284)
T cd07573 66 PTTARFQALAKELGVVIP 83 (284)
T ss_pred HHHHHHHHHHHHCCEEEE
Confidence 466788999999988776
No 198
>smart00851 MGS MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in Carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine. This family also includes inosicase. The known structures in this family show a common phosphate binding site PUBMED:10526357.
Probab=22.16 E-value=1.5e+02 Score=19.46 Aligned_cols=44 Identities=14% Similarity=0.211 Sum_probs=26.3
Q ss_pred HHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE
Q 030618 23 KIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI 88 (174)
Q Consensus 23 ~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i 88 (174)
.+++.+++ .....|+.++.+..... ..-...+++.|.+++++++
T Consensus 46 ~i~~~i~~--g~id~VIn~~~~~~~~~--------------------~~d~~~iRr~A~~~~Ip~~ 89 (90)
T smart00851 46 AILDLIKN--GEIDLVINTLYPLGAQP--------------------HEDGKALRRAAENIDIPGA 89 (90)
T ss_pred HHHHHhcC--CCeEEEEECCCcCccee--------------------ccCcHHHHHHHHHcCCCee
Confidence 36666666 56677777665422110 0122367788999999875
No 199
>PF14202 TnpW: Transposon-encoded protein TnpW
Probab=22.02 E-value=29 Score=19.57 Aligned_cols=23 Identities=22% Similarity=0.463 Sum_probs=19.2
Q ss_pred CCCCCChHHHHHHHHHHHHHHHh
Q 030618 107 DGIHFSSEGSKIVVKEILKVLRE 129 (174)
Q Consensus 107 DGvHpn~~Gy~~~a~~l~~~l~~ 129 (174)
=.+|+|+.+-.-|.+.|.+.|+.
T Consensus 14 V~~~F~~~s~et~~DKi~rli~~ 36 (37)
T PF14202_consen 14 VEVHFSETSKETMQDKIKRLIRR 36 (37)
T ss_pred EEEEECCCccccHHHHHHHHHhc
Confidence 36899999999999999888764
No 200
>PRK13463 phosphatase PhoE; Provisional
Probab=21.99 E-value=2e+02 Score=21.97 Aligned_cols=34 Identities=9% Similarity=-0.028 Sum_probs=25.5
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCC
Q 030618 10 PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAP 43 (174)
Q Consensus 10 ~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitpp 43 (174)
.+-+.+++.+++...++.+....++-.|++++=.
T Consensus 119 ~gEs~~~~~~R~~~~l~~i~~~~~~~~vlvVsHg 152 (203)
T PRK13463 119 SGENFEAVHKRVIEGMQLLLEKHKGESILIVSHA 152 (203)
T ss_pred CCeEHHHHHHHHHHHHHHHHHhCCCCEEEEEeCh
Confidence 4568899999999999988775455567777643
No 201
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=21.94 E-value=3.1e+02 Score=23.20 Aligned_cols=52 Identities=12% Similarity=0.172 Sum_probs=30.9
Q ss_pred HHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEec
Q 030618 22 RKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDL 90 (174)
Q Consensus 22 ~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl 90 (174)
.+++..+++ ++++|++.+..+.. . -...+..+.+.+.+.++++++|..=||+
T Consensus 67 ~~~~~~A~~--~~v~v~~~~~~~~~--~-------------l~~~~~R~~fi~siv~~~~~~gfDGIdI 118 (358)
T cd02875 67 DELLCYAHS--KGVRLVLKGDVPLE--Q-------------ISNPTYRTQWIQQKVELAKSQFMDGINI 118 (358)
T ss_pred HHHHHHHHH--cCCEEEEECccCHH--H-------------cCCHHHHHHHHHHHHHHHHHhCCCeEEE
Confidence 477888888 78999987532211 0 0122333456666666677776665554
No 202
>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]
Probab=21.69 E-value=4.8e+02 Score=21.75 Aligned_cols=92 Identities=15% Similarity=0.206 Sum_probs=58.4
Q ss_pred HHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEE---ec---hHH
Q 030618 20 NMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAI---DL---WTA 93 (174)
Q Consensus 20 nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~i---Dl---~~~ 93 (174)
-++.+++.+++ .+.+|||-..+- .... ... .......++.+|++++++++ |= ++.
T Consensus 30 ~~~AileaA~e--~~sPvIiq~S~g----~~~y---------~gg----~~~~~~~v~~~a~~~~vPV~lHlDHg~~~~~ 90 (286)
T COG0191 30 TLQAILEAAEE--EKSPVIIQFSEG----AAKY---------AGG----ADSLAHMVKALAEKYGVPVALHLDHGASFED 90 (286)
T ss_pred HHHHHHHHHHH--hCCCEEEEeccc----HHHH---------hch----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHH
Confidence 45677777777 567888865431 1110 011 23466778899999999987 31 122
Q ss_pred Hhhc--CCcccccccCCCCCChHHHHHHHHHHHHHHHhcC
Q 030618 94 MQQR--DDWLTTCFMDGIHFSSEGSKIVVKEILKVLREAD 131 (174)
Q Consensus 94 ~~~~--~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~~ 131 (174)
+... .++. ..+.||-|..-+=.-.+.+.+.+...+.+
T Consensus 91 ~~~ai~~GFs-SvMiDgS~~~~eENi~~tkevv~~ah~~g 129 (286)
T COG0191 91 CKQAIRAGFS-SVMIDGSHLPFEENIAITKEVVEFAHAYG 129 (286)
T ss_pred HHHHHhcCCc-eEEecCCcCCHHHHHHHHHHHHHHHHHcC
Confidence 2221 1332 36789999998888888888888877643
No 203
>PRK02551 flavoprotein NrdI; Provisional
Probab=21.54 E-value=99 Score=23.17 Aligned_cols=29 Identities=3% Similarity=0.017 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEechHHHh
Q 030618 67 ESCRIYSEACLKLCQEMDVKAIDLWTAMQ 95 (174)
Q Consensus 67 ~~i~~y~~~i~~lA~~~~v~~iDl~~~~~ 95 (174)
..-+.|+.+.+++|++++++++.-++...
T Consensus 106 Nfg~~F~~aa~~ia~~~~vP~L~~fEl~G 134 (154)
T PRK02551 106 NFNNQYCLTAKQYAKRFGFPMLADFELRG 134 (154)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEeeccC
Confidence 33467999999999999999998876543
No 204
>PRK15421 DNA-binding transcriptional regulator MetR; Provisional
Probab=21.39 E-value=2.7e+02 Score=22.69 Aligned_cols=46 Identities=13% Similarity=0.242 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHcCCeEEechHHHhhcCCcccccccCCCCCChHHHHHH--HHHHHHHHHh
Q 030618 70 RIYSEACLKLCQEMDVKAIDLWTAMQQRDDWLTTCFMDGIHFSSEGSKIV--VKEILKVLRE 129 (174)
Q Consensus 70 ~~y~~~i~~lA~~~~v~~iDl~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~--a~~l~~~l~~ 129 (174)
...++.++++-++.|+++++-. .=|++||++|..++ ++.+++.+++
T Consensus 31 paVS~~Ik~LE~~lg~~LF~R~--------------~r~v~lT~~G~~l~~~a~~il~~~~~ 78 (317)
T PRK15421 31 SALSHQFSDLEQRLGFRLFVRK--------------SQPLRFTPQGEILLQLANQVLPQISQ 78 (317)
T ss_pred HHHHHHHHHHHHHhCCEEEEec--------------CCCceECHhHHHHHHHHHHHHHHHHH
Confidence 4577888999999999998842 35677777777765 4445544444
No 205
>PRK07714 hypothetical protein; Provisional
Probab=21.36 E-value=2.6e+02 Score=18.92 Aligned_cols=21 Identities=10% Similarity=0.088 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCeEEechH
Q 030618 72 YSEACLKLCQEMDVKAIDLWT 92 (174)
Q Consensus 72 y~~~i~~lA~~~~v~~iDl~~ 92 (174)
..+-+.+.|+.++++++.+.+
T Consensus 48 ~~~ki~~~~~~~~vp~~~~~s 68 (100)
T PRK07714 48 TTKKITDKCTYYNVPMRKVEN 68 (100)
T ss_pred HHHHHHHHHHhcCCCEEEeCC
Confidence 344456778999999987643
No 206
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=21.29 E-value=3.5e+02 Score=20.66 Aligned_cols=70 Identities=7% Similarity=0.108 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEech
Q 030618 16 EYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLW 91 (174)
Q Consensus 16 ~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~ 91 (174)
+...-+..+.+.+.+. +++++|++-........ . .... +........+.+....++++|+++++.++=+.
T Consensus 98 ~l~~~l~~l~~~l~~~-~~~~liVIDSis~~~~~--~--~~~~-~~~~~r~~~l~~~~~~L~~la~~~~~avl~tn 167 (235)
T cd01123 98 HQLQLLEELEAILIES-SRIKLVIVDSVTALFRA--E--FDGR-GELAERQQHLAKLLRTLKRLADEFNVAVVITN 167 (235)
T ss_pred HHHHHHHHHHHHHhhc-CCeeEEEEeCcHHHHHH--H--hcCC-ccHHHHHHHHHHHHHHHHHHHHHhCCEEEEec
Confidence 3333444444444442 36888887764321110 0 0000 00001123456677889999999999998544
No 207
>cd01017 AdcA Metal binding protein AcdA. These proteins have been shown to function in the ABC uptake of Zn2+ and Mn2+ and in competence for genetic transformation and adhesion. The AcdA proteins belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. They are comprised of two globular subdomains connected by a long alpha helix and they bind their ligand in the cleft between these domains. In addition, many of these proteins have a low complexity region containing metal binding histidine-rich motif (repetitive HDH sequence).
Probab=21.12 E-value=2.6e+02 Score=22.54 Aligned_cols=24 Identities=13% Similarity=0.331 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHhhCCCceEEEEcCC
Q 030618 18 IENMRKIALHLKSLSAKTRIIFLSAP 43 (174)
Q Consensus 18 ~~nl~~iI~~ir~~~~~~~IILitpp 43 (174)
.+.+.++++.+++ .+++.|++.+-
T Consensus 206 ~~~l~~l~~~ik~--~~v~~if~e~~ 229 (282)
T cd01017 206 PKQLAELVEFVKK--SDVKYIFFEEN 229 (282)
T ss_pred HHHHHHHHHHHHH--cCCCEEEEeCC
Confidence 5678899999999 67999998773
No 208
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=21.10 E-value=5e+02 Score=21.78 Aligned_cols=118 Identities=19% Similarity=0.151 Sum_probs=62.1
Q ss_pred CCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCC-------------CChhhhhhh-hccc-cccccCCChHHHHHHHH
Q 030618 10 PHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPP-------------INKQQIFES-HLST-DFAVWGRTNESCRIYSE 74 (174)
Q Consensus 10 ~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp-------------~~~~~~~~~-~~~~-~~~~~~~~n~~i~~y~~ 74 (174)
.++.-+.+...++++++.+++ .++++++---.. +........ .... ........++.+++|.+
T Consensus 68 ~~l~~d~~i~~~~~l~~~vh~--~g~~~~~Ql~H~G~~~~~~~~~~~~~~ps~~~~~~~~~~~~~mt~~eI~~ii~~f~~ 145 (343)
T cd04734 68 LNASDDEIIPGFRRLAEAVHA--HGAVIMIQLTHLGRRGDGDGSWLPPLAPSAVPEPRHRAVPKAMEEEDIEEIIAAFAD 145 (343)
T ss_pred cccCCHHHHHHHHHHHHHHHh--cCCeEEEeccCCCcCcCcccCCCcccCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHH
Confidence 445678889999999999999 678877742111 000000000 0000 00112234667788887
Q ss_pred HHHHHHHHcCCeEEechHHHh---hc-CCcccccccCCCCCChHHHHHHHHHHHHHHHhc
Q 030618 75 ACLKLCQEMDVKAIDLWTAMQ---QR-DDWLTTCFMDGIHFSSEGSKIVVKEILKVLREA 130 (174)
Q Consensus 75 ~i~~lA~~~~v~~iDl~~~~~---~~-~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~ 130 (174)
+.+ .|.+.|+..|+++.+-. +. -.....-..|+-==+-+....+...|++.+++.
T Consensus 146 AA~-ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~ 204 (343)
T cd04734 146 AAR-RCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAA 204 (343)
T ss_pred HHH-HHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHH
Confidence 765 56778999999987321 10 000000012211113455556666777777764
No 209
>COG0613 Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only]
Probab=21.06 E-value=2.3e+02 Score=22.86 Aligned_cols=78 Identities=12% Similarity=0.075 Sum_probs=47.3
Q ss_pred CCCCCCCCCChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc
Q 030618 4 HSTGLGPHVPLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM 83 (174)
Q Consensus 4 ~~~~~~~~v~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~ 83 (174)
||+.+....+ .+.+++.+++ .+..++-+|-.... .. +.++.+..+...
T Consensus 9 HSt~Sdg~~~-------p~~vv~~A~~--~g~~vlAiTDHdt~----------------~g-------~~~a~~~~~~~l 56 (258)
T COG0613 9 HTTASDGGLT-------PREVVERAKA--KGVDVLAITDHDTV----------------RG-------LLEARRAAGLRL 56 (258)
T ss_pred ecccCCCCCC-------HHHHHHHHHH--cCCCEEEECCcccc----------------cc-------cHHHHHHhhcCC
Confidence 7777777666 7889999999 67888888764321 11 222333334566
Q ss_pred CCeEEechHHHhhcCCcccccccCCCCCCh
Q 030618 84 DVKAIDLWTAMQQRDDWLTTCFMDGIHFSS 113 (174)
Q Consensus 84 ~v~~iDl~~~~~~~~~~~~~~~~DGvHpn~ 113 (174)
++.+|+-........+..-.+..+|+..+.
T Consensus 57 ~i~vipG~Ei~t~~~~~~ih~~~~~~~~~~ 86 (258)
T COG0613 57 GITVIPGIEISTTWGGHIIHILGLGIDITD 86 (258)
T ss_pred CceeeccEEeecccCCeEEEEEeecccccc
Confidence 899998766555433222234556665443
No 210
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=20.89 E-value=4.1e+02 Score=20.65 Aligned_cols=101 Identities=12% Similarity=0.105 Sum_probs=55.2
Q ss_pred ChHHHHHHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHc----CCeEE
Q 030618 13 PLPEYIENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEM----DVKAI 88 (174)
Q Consensus 13 ~l~~y~~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~----~v~~i 88 (174)
.-+.+.+.|+++|+.+++ .|..|||-- ... ..+.. .. ..........+.+.+..+.+|..+ .+..+
T Consensus 56 ~~~~~~~~ld~~v~~a~~--~gi~vild~-h~~--~~w~~---~~--~~~~~~~~~~~~~~~~~~~la~~y~~~~~v~~~ 125 (281)
T PF00150_consen 56 YDETYLARLDRIVDAAQA--YGIYVILDL-HNA--PGWAN---GG--DGYGNNDTAQAWFKSFWRALAKRYKDNPPVVGW 125 (281)
T ss_dssp BTHHHHHHHHHHHHHHHH--TT-EEEEEE-EES--TTCSS---ST--STTTTHHHHHHHHHHHHHHHHHHHTTTTTTEEE
T ss_pred ccHHHHHHHHHHHHHHHh--CCCeEEEEe-ccC--ccccc---cc--cccccchhhHHHHHhhhhhhccccCCCCcEEEE
Confidence 346888999999999999 678887632 111 00100 00 011122233455666777888887 45555
Q ss_pred echHHHhhcCCcccccccCC--C-CCChHHHHHHHHHHHHHHHhcC
Q 030618 89 DLWTAMQQRDDWLTTCFMDG--I-HFSSEGSKIVVKEILKVLREAD 131 (174)
Q Consensus 89 Dl~~~~~~~~~~~~~~~~DG--v-Hpn~~Gy~~~a~~l~~~l~~~~ 131 (174)
++..--. ...+. . =.+...+..+.+.+.+.|++.+
T Consensus 126 el~NEP~--------~~~~~~~w~~~~~~~~~~~~~~~~~~Ir~~~ 163 (281)
T PF00150_consen 126 ELWNEPN--------GGNDDANWNAQNPADWQDWYQRAIDAIRAAD 163 (281)
T ss_dssp ESSSSGC--------STTSTTTTSHHHTHHHHHHHHHHHHHHHHTT
T ss_pred EecCCcc--------ccCCccccccccchhhhhHHHHHHHHHHhcC
Confidence 5432111 11111 0 0123567778999999999974
No 211
>PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional
Probab=20.82 E-value=3.9e+02 Score=25.21 Aligned_cols=40 Identities=13% Similarity=0.194 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHcCCeEE-echHHHhhcCCcccccccCCCCCChH
Q 030618 68 SCRIYSEACLKLCQEMDVKAI-DLWTAMQQRDDWLTTCFMDGIHFSSE 114 (174)
Q Consensus 68 ~i~~y~~~i~~lA~~~~v~~i-Dl~~~~~~~~~~~~~~~~DGvHpn~~ 114 (174)
.+....+.++++|+++|+.++ +=+-.+.. .+..| ||+...
T Consensus 47 ~~~~~a~~l~~l~~~~~~~liind~~~la~------~~~~d-VHlg~~ 87 (755)
T PRK09517 47 DVRAAAKELKELCDARGVALVVNDRLDVAV------ELGLH-VHIGQG 87 (755)
T ss_pred HHHHHHHHHHHHHHHhCCeEEEeChHHHHH------HcCCC-eecCCC
Confidence 345577888899999998777 32222221 24467 998864
No 212
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=20.65 E-value=4.3e+02 Score=20.84 Aligned_cols=86 Identities=6% Similarity=0.059 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHhhCCCceEEEEcCCCCChhhhhhhhccccccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhhcC
Q 030618 19 ENMRKIALHLKSLSAKTRIIFLSAPPINKQQIFESHLSTDFAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQRD 98 (174)
Q Consensus 19 ~nl~~iI~~ir~~~~~~~IILitppp~~~~~~~~~~~~~~~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~~ 98 (174)
..+..+++.+++ ++.+|++.-.--... .+ .......+..+.+.+.+.++++++++.=||+.=..
T Consensus 46 ~~~~~~~~~~~~--~~~kvl~sigg~~~~-~~---------~~~~~~~~~r~~fi~~lv~~~~~~~~DGIdiDwE~---- 109 (253)
T cd06545 46 SELNSVVNAAHA--HNVKILISLAGGSPP-EF---------TAALNDPAKRKALVDKIINYVVSYNLDGIDVDLEG---- 109 (253)
T ss_pred HHHHHHHHHHHh--CCCEEEEEEcCCCCC-cc---------hhhhcCHHHHHHHHHHHHHHHHHhCCCceeEEeec----
Confidence 457788888888 678888743211000 00 00112334456688888888899887766653100
Q ss_pred CcccccccCCCCCChHHHHHHHHHHHHHHHhc
Q 030618 99 DWLTTCFMDGIHFSSEGSKIVVKEILKVLREA 130 (174)
Q Consensus 99 ~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~ 130 (174)
...+ .+++..+.+.+.+.+.+.
T Consensus 110 -----~~~~-----~~~~~~fv~~Lr~~l~~~ 131 (253)
T cd06545 110 -----PDVT-----FGDYLVFIRALYAALKKE 131 (253)
T ss_pred -----cCcc-----HhHHHHHHHHHHHHHhhc
Confidence 0011 567777888888888764
No 213
>PF02450 LCAT: Lecithin:cholesterol acyltransferase; InterPro: IPR003386 Lecithin:cholesterol acyltransferase (LACT), also known as phosphatidylcholine-sterol acyltransferase (2.3.1.43 from EC), is involved in extracellular metabolism of plasma lipoproteins, including cholesterol. It esterifies the free cholesterol transported in plasma lipoproteins, and is activated by apolipoprotein A-I. Defects in LACT cause Norum and Fish eye diseases. This family also includes phospholipid:diacylglycerol acyltransferase (PDAT)(2.3.1.158 from EC), which is involved in triacylglycerol formation by an acyl-CoA independent pathway. The enzyme specifically transfers acyl groups from the sn-2 position of a phospholipid to diacylglycerol, thus forming an sn-1-lysophospholipid [].; GO: 0008374 O-acyltransferase activity, 0006629 lipid metabolic process
Probab=20.63 E-value=1.4e+02 Score=25.60 Aligned_cols=28 Identities=7% Similarity=0.304 Sum_probs=23.5
Q ss_pred hHHHHHHHHHHHHHHHhhCCCceEEEEcC
Q 030618 14 LPEYIENMRKIALHLKSLSAKTRIIFLSA 42 (174)
Q Consensus 14 l~~y~~nl~~iI~~ir~~~~~~~IILitp 42 (174)
.+.|...|+.+|+.+.+.+ +.+|+|++=
T Consensus 99 ~~~~~~~lk~~ie~~~~~~-~~kv~li~H 126 (389)
T PF02450_consen 99 RDEYFTKLKQLIEEAYKKN-GKKVVLIAH 126 (389)
T ss_pred HHHHHHHHHHHHHHHHHhc-CCcEEEEEe
Confidence 4599999999999998875 788888763
No 214
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=20.62 E-value=1.6e+02 Score=22.66 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHhhCC--CceEEEEcCCC
Q 030618 15 PEYIENMRKIALHLKSLSA--KTRIIFLSAPP 44 (174)
Q Consensus 15 ~~y~~nl~~iI~~ir~~~~--~~~IILitppp 44 (174)
......++++++.+|+..+ +++|++.+++.
T Consensus 144 ~~~~~~~~~~i~~lr~~~~~~~~~i~vGG~~~ 175 (201)
T cd02070 144 TTTMGGMKEVIEALKEAGLRDKVKVMVGGAPV 175 (201)
T ss_pred cccHHHHHHHHHHHHHCCCCcCCeEEEECCcC
Confidence 3445678889999999755 67777777654
No 215
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=20.56 E-value=2.5e+02 Score=23.93 Aligned_cols=24 Identities=17% Similarity=0.185 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHcCCeEE--echHHH
Q 030618 71 IYSEACLKLCQEMDVKAI--DLWTAM 94 (174)
Q Consensus 71 ~y~~~i~~lA~~~~v~~i--Dl~~~~ 94 (174)
.|-+.++++|+++++.+| +++..+
T Consensus 216 ~~l~~l~~l~~~~~~llI~DEv~~g~ 241 (423)
T TIGR00713 216 EFLAGLRALTEEYGSLLIFDEVMTGF 241 (423)
T ss_pred HHHHHHHHHHHHhCCEEEEEcccccc
Confidence 588889999999998776 355544
No 216
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=20.27 E-value=3.2e+02 Score=23.70 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=61.0
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhCCCceE-EEEcCCCCChh--hhhhh--hcc---c-----ccc--ccCCChHHHHHH-
Q 030618 9 GPHVPLPEYIENMRKIALHLKSLSAKTRI-IFLSAPPINKQ--QIFES--HLS---T-----DFA--VWGRTNESCRIY- 72 (174)
Q Consensus 9 ~~~v~l~~y~~nl~~iI~~ir~~~~~~~I-ILitppp~~~~--~~~~~--~~~---~-----~~~--~~~~~n~~i~~y- 72 (174)
.-.+..+.|=..++.+++.+++ .|-+. |++.|..+... ....+ +.- . .+. ..+..+..+.+|
T Consensus 94 dW~~~~~kFP~Gl~~l~~~i~~--~Gmk~GlW~ePe~v~~~S~l~~~hPdw~l~~~~~~~~~~r~~~vLD~~~pev~~~l 171 (394)
T PF02065_consen 94 DWEPDPKKFPNGLKPLADYIHS--LGMKFGLWFEPEMVSPDSDLYREHPDWVLRDPGRPPTLGRNQYVLDLSNPEVRDYL 171 (394)
T ss_dssp BECBBTTTSTTHHHHHHHHHHH--TT-EEEEEEETTEEESSSCHCCSSBGGBTCCTTSE-ECBTTBEEB-TTSHHHHHHH
T ss_pred ceeEChhhhCCcHHHHHHHHHH--CCCeEEEEeccccccchhHHHHhCccceeecCCCCCcCcccceEEcCCCHHHHHHH
Confidence 3445667777889999999999 55664 45655543321 11110 100 0 000 123344444444
Q ss_pred HHHHHHHHHHcCCeEE--echHHHhhcCCcccccccCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCcC
Q 030618 73 SEACLKLCQEMDVKAI--DLWTAMQQRDDWLTTCFMDGIHFSSEGSKIVVKEILKVLREADWEPSLHWR 139 (174)
Q Consensus 73 ~~~i~~lA~~~~v~~i--Dl~~~~~~~~~~~~~~~~DGvHpn~~Gy~~~a~~l~~~l~~~~~~p~l~~~ 139 (174)
.+.+.++.++.|+.|| |+...+.. ....+..-....|..=...+++.|++. .|++..+
T Consensus 172 ~~~i~~ll~~~gidYiK~D~n~~~~~-------~~~~~~~~~~~~~~~~~y~l~~~L~~~--~P~v~iE 231 (394)
T PF02065_consen 172 FEVIDRLLREWGIDYIKWDFNRDITE-------AGSPSLPEGYHRYVLGLYRLLDRLRAR--FPDVLIE 231 (394)
T ss_dssp HHHHHHHHHHTT-SEEEEE-TS-TTS--------SSTTS-GHHHHHHHHHHHHHHHHHHH--TTTSEEE
T ss_pred HHHHHHHHHhcCCCEEEeccccCCCC-------CCCCCchHHHHHHHHHHHHHHHHHHHh--CCCcEEE
Confidence 5667788889999999 54433221 112222211123333234567777775 7888776
No 217
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=20.19 E-value=3.4e+02 Score=19.50 Aligned_cols=22 Identities=14% Similarity=0.024 Sum_probs=15.3
Q ss_pred CCChHHHHHHHHHHHHHHHHcC
Q 030618 63 GRTNESCRIYSEACLKLCQEMD 84 (174)
Q Consensus 63 ~~~n~~i~~y~~~i~~lA~~~~ 84 (174)
....+.+.+....+++++++.|
T Consensus 103 ~D~~Etl~di~~e~~~~~~~~G 124 (135)
T cd00419 103 SDHLETLYELDIEYRELAEEAG 124 (135)
T ss_pred cccHHHHHHHHHHHHHHHHHcC
Confidence 3445666667777778888877
No 218
>KOG1496 consensus Malate dehydrogenase [Energy production and conversion]
Probab=20.04 E-value=2.4e+02 Score=23.37 Aligned_cols=77 Identities=14% Similarity=0.187 Sum_probs=41.5
Q ss_pred CCceEEEEcCCCCChhhhhhhhcccc----ccccCCChHHHHHHHHHHHHHHHHcCCeEEechHHHhhcCCcccccccCC
Q 030618 33 AKTRIIFLSAPPINKQQIFESHLSTD----FAVWGRTNESCRIYSEACLKLCQEMDVKAIDLWTAMQQRDDWLTTCFMDG 108 (174)
Q Consensus 33 ~~~~IILitppp~~~~~~~~~~~~~~----~~~~~~~n~~i~~y~~~i~~lA~~~~v~~iDl~~~~~~~~~~~~~~~~DG 108 (174)
+++||++++-|.-.-.-.-....... +....| -+.|+++.|+|.+.|+++-|+-..+. -++....-.+|-
T Consensus 122 ~~~KVlVVgNPaNTNali~~k~ApsIP~kNfs~lTR-----LDhNRA~~QlA~klgv~~~~VkNviI-WGNHSsTQyPD~ 195 (332)
T KOG1496|consen 122 PNVKVLVVGNPANTNALILKKFAPSIPEKNFSALTR-----LDHNRALAQLALKLGVPVSDVKNVII-WGNHSSTQYPDV 195 (332)
T ss_pred CCceEEEecCccccchhHHhhhCCCCchhcchhhhh-----hchhhHHHHHHHhhCCchhhcceeEE-ecccccccCCCc
Confidence 88999999876532111111000000 111112 24788999999999999988754332 111122345666
Q ss_pred CCCChHH
Q 030618 109 IHFSSEG 115 (174)
Q Consensus 109 vHpn~~G 115 (174)
.|-+-.+
T Consensus 196 ~hA~V~~ 202 (332)
T KOG1496|consen 196 NHATVNT 202 (332)
T ss_pred cceeeec
Confidence 6655443
Done!