Query 030621
Match_columns 174
No_of_seqs 122 out of 167
Neff 4.1
Searched_HMMs 29240
Date Tue Mar 26 03:02:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030621.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030621hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ddt_A E3 ubiquitin-protein li 95.3 0.006 2E-07 38.4 1.5 38 58-99 7-46 (48)
2 2d8u_A Ubiquitin ligase TRIM63 94.6 0.01 3.5E-07 39.0 1.2 36 59-98 10-47 (64)
3 1fre_A Nuclear factor XNF7; zi 94.6 0.016 5.5E-07 35.2 2.0 35 59-98 5-41 (42)
4 2yvr_A Transcription intermedi 94.4 0.01 3.5E-07 37.4 0.7 36 59-98 8-44 (50)
5 2did_A Tripartite motif protei 94.2 0.019 6.6E-07 36.6 1.8 36 59-99 10-47 (53)
6 2yrg_A Tripartite motif-contai 92.6 0.049 1.7E-06 35.9 1.8 36 59-99 16-53 (59)
7 2csv_A Tripartite motif protei 92.2 0.04 1.4E-06 37.2 1.0 35 59-98 20-55 (72)
8 2dja_A Midline-2; tripartite m 90.4 0.06 2.1E-06 37.0 0.4 38 59-100 20-59 (84)
9 2egm_A Tripartite motif-contai 89.9 0.032 1.1E-06 36.6 -1.3 35 59-98 20-56 (57)
10 2jun_A Midline-1; B-BOX, TRIM, 89.8 0.084 2.9E-06 37.1 0.8 37 58-98 60-98 (101)
11 2das_A Zinc finger MYM-type pr 87.0 0.41 1.4E-05 33.1 2.7 30 141-170 13-52 (62)
12 2w0t_A Lethal(3)malignant brai 85.4 0.2 7E-06 32.3 0.4 25 146-170 4-34 (43)
13 2l8e_A Polyhomeotic-like prote 71.2 0.58 2E-05 30.6 -0.8 25 148-172 18-47 (49)
14 1lv3_A Hypothetical protein YA 63.8 0.91 3.1E-05 31.7 -1.0 26 148-173 9-39 (68)
15 3nis_A E3 ubiquitin-protein li 46.8 12 0.00041 26.6 2.5 31 67-97 16-51 (82)
16 2hiy_A Hypothetical protein; C 46.7 6.9 0.00023 31.0 1.3 32 106-138 20-54 (183)
17 2jun_A Midline-1; B-BOX, TRIM, 45.7 6.2 0.00021 27.2 0.8 27 68-95 14-41 (101)
18 3ny3_A E3 ubiquitin-protein li 43.8 12 0.00042 26.0 2.1 31 67-97 12-47 (75)
19 1tot_A CREB-binding protein; z 39.2 11 0.00037 24.4 1.1 29 72-101 19-49 (52)
20 2yqp_A Probable ATP-dependent 35.8 25 0.00085 24.0 2.5 25 148-172 19-48 (60)
21 2yqq_A Zinc finger HIT domain- 33.1 23 0.0008 23.5 2.1 22 148-170 12-39 (56)
22 2odd_A Protein CBFA2T1; MYND z 29.9 12 0.0004 24.4 0.1 25 148-172 17-47 (64)
23 2fc7_A ZZZ3 protein; structure 27.9 25 0.00085 24.6 1.6 30 73-102 37-76 (82)
24 2nrr_A Uvrabc system protein C 27.9 11 0.00037 30.0 -0.4 27 115-141 21-47 (159)
25 2dip_A Zinc finger SWIM domain 23.7 12 0.0004 27.2 -0.8 29 73-101 47-77 (98)
26 2ffw_A Midline-1; B-BOX, ring 22.0 23 0.0008 24.1 0.5 24 69-93 42-66 (78)
27 2nrt_A Uvrabc system protein C 20.4 16 0.00055 30.2 -0.8 27 115-141 26-52 (220)
No 1
>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A
Probab=95.33 E-value=0.006 Score=38.36 Aligned_cols=38 Identities=34% Similarity=0.791 Sum_probs=30.0
Q ss_pred ccccccccCCCCCcceecccCCCCcCCcccc-c-CCCCCceeEE
Q 030621 58 VQCKLHADAHKSECNMYCLDCMNGALCSLCL-S-LHRDHRAIQI 99 (174)
Q Consensus 58 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl-~-~H~~HrvlQI 99 (174)
..|..|.. ...++||.+|. .++|..|. . .|++|+++.|
T Consensus 7 ~~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l 46 (48)
T 3ddt_A 7 PMCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAPL 46 (48)
T ss_dssp CBCSSSTT---SBCCEEETTTT-EEECHHHHHHSTTTTSCEEEC
T ss_pred CcCCCCCC---ccccEEcCCCC-eeEcccccCCCcCCCCcEEeC
Confidence 46998863 23679999997 89999996 3 7999987654
No 2
>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=94.64 E-value=0.01 Score=38.98 Aligned_cols=36 Identities=36% Similarity=0.842 Sum_probs=28.5
Q ss_pred cccccccCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 030621 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQ 98 (174)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ 98 (174)
.|..|++ ...++||.+|. ..+|..|.. .|++|+++-
T Consensus 10 ~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~ 47 (64)
T 2d8u_A 10 MCKEHED---EKINIYCLTCE-VPTCSMCKVFGIHKACEVAP 47 (64)
T ss_dssp CCSSCTT---CCCCSEESSSC-CCCCSHHHHSSSTTSSCEEC
T ss_pred cCcCcCC---CccceEcCcCC-ceeCccccCCCcCCCCCeeC
Confidence 4999954 24679999998 899999963 799998653
No 3
>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1
Probab=94.63 E-value=0.016 Score=35.20 Aligned_cols=35 Identities=26% Similarity=0.624 Sum_probs=28.3
Q ss_pred cccccccCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 030621 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQ 98 (174)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ 98 (174)
.|..|.. ...+||.++. ..+|..|.. .|++|+++-
T Consensus 5 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~ 41 (42)
T 1fre_A 5 KCSEHDE----RLKLYCKDDG-TLSCVICRDSLKHASHNFLP 41 (42)
T ss_dssp CCCSSCS----SCCCCCCSSS-SSSCCTTSSCSSCTTCCCCC
T ss_pred cchhhCC----eeeEEeCCCC-eEEeccCCCCCCCCCCcEec
Confidence 5888852 4679999998 889999975 799998753
No 4
>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}
Probab=94.39 E-value=0.01 Score=37.40 Aligned_cols=36 Identities=25% Similarity=0.598 Sum_probs=28.2
Q ss_pred cccccccCCCCCcceecccCCCCcCCccccc-CCCCCceeE
Q 030621 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQ 98 (174)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQ 98 (174)
.|..|+. ...++||.+|. ..+|..|.. .|++|+++-
T Consensus 8 ~C~~H~~---e~l~lfC~~~~-~~iC~~C~~~~H~~H~~~~ 44 (50)
T 2yvr_A 8 YCNVHKH---EPLVLFCESCD-TLTCRDCQLNAHKDHQYQF 44 (50)
T ss_dssp BCSSSTT---CBCCEEETTTT-EEECHHHHHTTTTTCCEEE
T ss_pred cCcCCCC---CCEEEEeCCCC-EEEecccCCCcCCCCceec
Confidence 4898953 24679999998 899999964 788887653
No 5
>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A
Probab=94.20 E-value=0.019 Score=36.61 Aligned_cols=36 Identities=25% Similarity=0.719 Sum_probs=29.1
Q ss_pred cccccccCCCCCcceecccCCCCcCCccccc--CCCCCceeEE
Q 030621 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQI 99 (174)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 99 (174)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++-|
T Consensus 10 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l 47 (53)
T 2did_A 10 LCPQHHE----ALSLFCYEDQ-EAVCLICAISHTHRAHTVVPL 47 (53)
T ss_dssp BCTTTCC----BCCEEESSSC-SEECHHHHTSSTTTTSCEEEC
T ss_pred cChhhCC----eeeEEeCCCC-eEEeccccCCCCCCCCcEeeH
Confidence 5999952 4679999998 899999964 7999987654
No 6
>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.62 E-value=0.049 Score=35.85 Aligned_cols=36 Identities=25% Similarity=0.627 Sum_probs=29.5
Q ss_pred cccccccCCCCCcceecccCCCCcCCccccc--CCCCCceeEE
Q 030621 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQI 99 (174)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQI 99 (174)
.|..|.. ...+||.++. ..+|..|.. .|++|+++-|
T Consensus 16 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~s~eH~~H~~~~l 53 (59)
T 2yrg_A 16 HCARHGE----KLLLFCQEDG-KVICWLCERSQEHRGHHTFPT 53 (59)
T ss_dssp BCTTTCC----BCCEEETTTC-SEECHHHHTSTTTTTCCEEEC
T ss_pred cChhhCc----eeeeecCCCC-cEEecccCCCCcCCCCcEeeH
Confidence 4999963 4679999997 889999974 7999987754
No 7
>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1
Probab=92.25 E-value=0.04 Score=37.16 Aligned_cols=35 Identities=23% Similarity=0.758 Sum_probs=28.0
Q ss_pred cccccccCCCCCcceecccCCCCcCCccccc-CCCCCceeE
Q 030621 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS-LHRDHRAIQ 98 (174)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~-~H~~HrvlQ 98 (174)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++-
T Consensus 20 ~C~~H~e----~l~lfC~~d~-~~iC~~C~~~~H~~H~~~~ 55 (72)
T 2csv_A 20 KCPVHGK----TMELFCQTDQ-TCICYLCMFQEHKNHSTVT 55 (72)
T ss_dssp BCTTTCC----BCCEEESSSC-CEECHHHHHTTTSSSCEEE
T ss_pred cCcccCC----ceEEEeCCCC-eEEccccCCCCCCCCCEec
Confidence 6999942 4679999998 889999975 788887654
No 8
>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A
Probab=90.44 E-value=0.06 Score=36.97 Aligned_cols=38 Identities=34% Similarity=0.757 Sum_probs=29.6
Q ss_pred cccccccCCCCCcceecccCCCCcCCccccc--CCCCCceeEEE
Q 030621 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQIR 100 (174)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQIR 100 (174)
.|..|.. ....+||.+|. ..+|..|.. .|++|+++-|-
T Consensus 20 ~C~~H~~---e~l~lfC~~d~-~~iC~~C~~~~~H~~H~~~~l~ 59 (84)
T 2dja_A 20 TCLDHEN---EKVNMYCVSDD-QLICALCKLVGRHRDHQVASLN 59 (84)
T ss_dssp CCSSCSS---SCCCEEETTTT-EEECHHHHHTSTTTTCCBCCCC
T ss_pred cCcCcCC---ccccEEcCCCC-ceEcccCcCCCCCCCCCccCHH
Confidence 5999953 13679999998 899999964 79999876443
No 9
>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=89.86 E-value=0.032 Score=36.58 Aligned_cols=35 Identities=23% Similarity=0.626 Sum_probs=28.5
Q ss_pred cccccccCCCCCcceecccCCCCcCCccccc--CCCCCceeE
Q 030621 59 QCKLHADAHKSECNMYCLDCMNGALCSLCLS--LHRDHRAIQ 98 (174)
Q Consensus 59 ~C~~H~~~~knE~N~FCldC~~~~~C~~Cl~--~H~~HrvlQ 98 (174)
.|..|.. ...+||.+|. ..+|..|.. .|++|+++.
T Consensus 20 ~C~~H~e----~L~lfC~~d~-~~iC~~C~~~~eH~~H~~~~ 56 (57)
T 2egm_A 20 ICPKHQE----ALKLFCEVDE-EAICVVCRESRSHKQHSVVP 56 (57)
T ss_dssp BCTTTCC----BCCEEETTTT-EEECHHHHHSHHHHSSCEEC
T ss_pred cChhhCc----eeeEEcCCCC-cEEecccCCCCCCCCCcEec
Confidence 4999942 4679999997 889999974 699998763
No 10
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.84 E-value=0.084 Score=37.08 Aligned_cols=37 Identities=38% Similarity=0.804 Sum_probs=29.2
Q ss_pred ccccccccCCCCCcceecccCCCCcCCcccc--cCCCCCceeE
Q 030621 58 VQCKLHADAHKSECNMYCLDCMNGALCSLCL--SLHRDHRAIQ 98 (174)
Q Consensus 58 ~~C~~H~~~~knE~N~FCldC~~~~~C~~Cl--~~H~~HrvlQ 98 (174)
..|..|.. ...++||.+|. ..+|..|. ..|++|+++-
T Consensus 60 ~~C~~H~~---e~l~~fC~~~~-~~iC~~C~~~~~H~~H~~~~ 98 (101)
T 2jun_A 60 LMCLEHED---EKVNMYCVTDD-QLICALCKLVGRHRDHQVAA 98 (101)
T ss_dssp CCCSSCSS---SCCCEEETTTT-EEECHHHHHHTTTSSSCBCC
T ss_pred CcCcCcCC---CcceEECCCCC-CccchhcCCCCCcCCCCeec
Confidence 36999963 23679999997 89999996 4799998753
No 11
>2das_A Zinc finger MYM-type protein 5; trash domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.17
Probab=86.97 E-value=0.41 Score=33.07 Aligned_cols=30 Identities=30% Similarity=0.596 Sum_probs=24.3
Q ss_pred CCCCCCCCccccccccccCC----------CCeeeecccc
Q 030621 141 PRPGKGVTNTCLVCERSLLD----------SFTFCSLGCK 170 (174)
Q Consensus 141 ~r~~kg~~~~C~~C~R~L~d----------~~rFCSL~CK 170 (174)
.++.+....+|+.|.+.|+. +-.|||..|-
T Consensus 13 q~~~~~~~v~C~~CKk~lqKGQtAyqrkGs~~LFCS~~CL 52 (62)
T 2das_A 13 QQLTKPAKITCANCKKPLQKGQTAYQRKGSAHLFCSTTCL 52 (62)
T ss_dssp CCCSSCSSCBCTTTCCBCCTTSCCEECTTCCCEESSHHHH
T ss_pred cCCCCccccChhhccchhhcCceeeeecCchhheechHHH
Confidence 45666678899999999983 4589999984
No 12
>2w0t_A Lethal(3)malignant brain tumor-like 2 protein; zinc, YACG, LMBL2, nucleus, zinc-finger, RNA binding, MBT repeats, PCG proteins, polymorphism; NMR {Homo sapiens}
Probab=85.36 E-value=0.2 Score=32.32 Aligned_cols=25 Identities=24% Similarity=0.635 Sum_probs=18.3
Q ss_pred CCCccccccccc-cCC-----CCeeeecccc
Q 030621 146 GVTNTCLVCERS-LLD-----SFTFCSLGCK 170 (174)
Q Consensus 146 g~~~~C~~C~R~-L~d-----~~rFCSL~CK 170 (174)
+....||.|++. ... +-||||++|-
T Consensus 4 ~~~~~CE~CG~~g~~~~F~~ksKRFCS~~Ca 34 (43)
T 2w0t_A 4 SEPAVCEMCGIVGTREAFFSKTKRFCSVSCS 34 (43)
T ss_dssp CCEEECTTTCCEEETTTSCTTTSSSSSHHHH
T ss_pred CceehhhhhcCcchhhhhccCCcceechhhh
Confidence 345689999984 333 4599999994
No 13
>2l8e_A Polyhomeotic-like protein 1; DNA binding protein; NMR {Homo sapiens}
Probab=71.19 E-value=0.58 Score=30.63 Aligned_cols=25 Identities=28% Similarity=0.559 Sum_probs=20.1
Q ss_pred CccccccccccCC-----CCeeeecccccc
Q 030621 148 TNTCLVCERSLLD-----SFTFCSLGCKVN 172 (174)
Q Consensus 148 ~~~C~~C~R~L~d-----~~rFCSL~CKv~ 172 (174)
...|+.|++.+.. +-+|||.+|.-.
T Consensus 18 ~~~C~~CG~~i~~~~~~r~krFCS~sCR~~ 47 (49)
T 2l8e_A 18 LLKCEYCGKYAPAEQFRGSKRFCSMTCAKR 47 (49)
T ss_dssp EEECTTTCCEEEGGGCTTTSSSCSHHHHHH
T ss_pred CCcChhccCccccccCCCCCccCCHHHHhh
Confidence 4579999998874 369999999754
No 14
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=63.81 E-value=0.91 Score=31.73 Aligned_cols=26 Identities=27% Similarity=0.672 Sum_probs=20.4
Q ss_pred CccccccccccC-----CCCeeeeccccccC
Q 030621 148 TNTCLVCERSLL-----DSFTFCSLGCKVNQ 173 (174)
Q Consensus 148 ~~~C~~C~R~L~-----d~~rFCSL~CKv~~ 173 (174)
...|.+|++... .-..|||-.||..+
T Consensus 9 ~~~CP~Cgkp~~W~~~~~~rPFCSeRCr~iD 39 (68)
T 1lv3_A 9 TVNCPTCGKTVVWGEISPFRPFCSKRCQLID 39 (68)
T ss_dssp EEECTTTCCEEECSSSSSCCSSSSHHHHHHH
T ss_pred cCcCCCCCCcccccccCCCCcccCHHHHhhh
Confidence 457999999985 23599999999743
No 15
>3nis_A E3 ubiquitin-protein ligase UBR1; E3 ubiquitin ligase, UBR BOX, zinc-binding protein, N-END RU ligase, metal binding protein; 1.68A {Saccharomyces cerevisiae} PDB: 3nii_A 3nij_A 3nih_A 3nik_A 3nim_A 3nin_A 3nil_A 3nit_A
Probab=46.80 E-value=12 Score=26.56 Aligned_cols=31 Identities=26% Similarity=0.507 Sum_probs=22.8
Q ss_pred CCCCcceecccCCCC---cCCccccc--CCCCCcee
Q 030621 67 HKSECNMYCLDCMNG---ALCSLCLS--LHRDHRAI 97 (174)
Q Consensus 67 ~knE~N~FCldC~~~---~~C~~Cl~--~H~~Hrvl 97 (174)
.++|--..|.+|... ++|..|-. .|.+|++.
T Consensus 16 ~~ge~~Y~C~~C~~d~tcvlC~~CF~~s~H~gH~~~ 51 (82)
T 3nis_A 16 KIGEPLYRCHECGCDDTCVLCIHCFNPKDHVNHHVC 51 (82)
T ss_dssp CTTCEEEEETTTBSSTTCCBCTTTCCGGGGTTSCEE
T ss_pred cCCCEEEEeeccCCCCCceEchhhCCCCCcCCceEE
Confidence 567888999999744 46677754 69999754
No 16
>2hiy_A Hypothetical protein; COG3797, structural genomics, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GOL; 1.40A {Streptococcus pneumoniae} SCOP: d.356.1.1
Probab=46.70 E-value=6.9 Score=31.04 Aligned_cols=32 Identities=28% Similarity=0.517 Sum_probs=24.1
Q ss_pred ceeeecchhhh---hcccceeeEEecCcEEEEeeCC
Q 030621 106 DVIRVSEIQKY---LDITGVQTYIINSARIVFLNER 138 (174)
Q Consensus 106 dVVRv~DIqkl---~D~S~IQtYvINsakVVFLn~R 138 (174)
+-|...|+..+ +-..+|+|| |||.-|||=-..
T Consensus 20 nkv~MadLr~~l~~lGf~~V~Ty-I~SGNvvF~s~~ 54 (183)
T 2hiy_A 20 NKVVMAELRQELTNLGLEKVESY-INSGNIFFTSID 54 (183)
T ss_dssp CCCCHHHHHHHHHHHTCEEEEEE-TTTTEEEEEECS
T ss_pred CcccHHHHHHHHHHcCCccceEE-EecCCEEEecCC
Confidence 44556666665 678999999 899999996543
No 17
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=45.65 E-value=6.2 Score=27.22 Aligned_cols=27 Identities=22% Similarity=0.646 Sum_probs=21.8
Q ss_pred CCCcceecccCCCCcCCcccccC-CCCCc
Q 030621 68 KSECNMYCLDCMNGALCSLCLSL-HRDHR 95 (174)
Q Consensus 68 knE~N~FCldC~~~~~C~~Cl~~-H~~Hr 95 (174)
+.+...+|++|. .+||..|+.. |..-+
T Consensus 14 ~~~av~~C~~C~-~~~C~~Cl~~~h~~~~ 41 (101)
T 2jun_A 14 AQDAVKTCVTCE-VSYCDECLKATHPNKK 41 (101)
T ss_dssp CCBCCEEETTTT-EEECHHHHHHHSCSCS
T ss_pred CCCceEECCcCC-hHHhHHHCHHHhccCC
Confidence 456789999998 9999999986 87433
No 18
>3ny3_A E3 ubiquitin-protein ligase UBR2; zinc finger-like, ubiquitin ligase, protein binding, lygase,; 1.60A {Homo sapiens} PDB: 3ny2_A 3ny1_A
Probab=43.81 E-value=12 Score=25.98 Aligned_cols=31 Identities=39% Similarity=0.731 Sum_probs=22.6
Q ss_pred CCCCcceecccCCCC---cCCccccc--CCCCCcee
Q 030621 67 HKSECNMYCLDCMNG---ALCSLCLS--LHRDHRAI 97 (174)
Q Consensus 67 ~knE~N~FCldC~~~---~~C~~Cl~--~H~~Hrvl 97 (174)
+++|-...|.+|... ++|..|-. .|.+|++.
T Consensus 12 ~~ge~~Y~C~~C~~d~tc~lC~~CF~~~~H~gH~~~ 47 (75)
T 3ny3_A 12 KVGEPTYSCRDCAVDPTCVLCMECFLGSIHRDHRYR 47 (75)
T ss_dssp CTTCEEEEETTTBSSTTCCBCHHHHHTSGGGGSCEE
T ss_pred cCCCEEEECccCCCCCCeeEChHHCCCCCcCCceEE
Confidence 567889999999744 46666643 68888753
No 19
>1tot_A CREB-binding protein; zinc binding, CBP, TAZ2, transferase; NMR {Mus musculus} SCOP: g.44.1.6
Probab=39.18 E-value=11 Score=24.36 Aligned_cols=29 Identities=24% Similarity=0.534 Sum_probs=22.8
Q ss_pred ceecccCCCCcCCccccc--CCCCCceeEEEe
Q 030621 72 NMYCLDCMNGALCSLCLS--LHRDHRAIQIRR 101 (174)
Q Consensus 72 N~FCldC~~~~~C~~Cl~--~H~~HrvlQIRR 101 (174)
-+-|..|.+--||..|.. .| .|+.++|..
T Consensus 19 R~~C~~C~dyDLC~~C~~~~~H-~H~m~~~~~ 49 (52)
T 1tot_A 19 RWHCTVCEDYDLCINCYNTKSH-THKMVKWGL 49 (52)
T ss_dssp EEEESSSSSCEECHHHHHHHCC-CSSEEEECS
T ss_pred eEEcCCCCCchhHHHHHhCCCC-CCceEEecC
Confidence 388999987789999965 55 798887753
No 20
>2yqp_A Probable ATP-dependent RNA helicase DDX59; structure genomics, ZF-HIT domain, DEAD box polypeptide 59 isoform 2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.75 E-value=25 Score=23.98 Aligned_cols=25 Identities=40% Similarity=0.737 Sum_probs=19.4
Q ss_pred CccccccccccC---C--CCeeeecccccc
Q 030621 148 TNTCLVCERSLL---D--SFTFCSLGCKVN 172 (174)
Q Consensus 148 ~~~C~~C~R~L~---d--~~rFCSL~CKv~ 172 (174)
.+.|-+|+|-=. | .-+-|||.||-.
T Consensus 19 ePvCvvCGryGeYICd~Td~DVCSlECK~~ 48 (60)
T 2yqp_A 19 EPICVVCGRYGEYICDKTDEDVCSLECKAK 48 (60)
T ss_dssp SCCCSSSSSCCSEECSSSCCEESSHHHHHH
T ss_pred CceEEEecCccceeecCCCcchhhHHHHHH
Confidence 566999998643 3 579999999953
No 21
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.15 E-value=23 Score=23.51 Aligned_cols=22 Identities=27% Similarity=0.718 Sum_probs=15.9
Q ss_pred CccccccccccCC------CCeeeecccc
Q 030621 148 TNTCLVCERSLLD------SFTFCSLGCK 170 (174)
Q Consensus 148 ~~~C~~C~R~L~d------~~rFCSL~CK 170 (174)
...|.+|+. ..- ..+||||.|-
T Consensus 12 ~~~C~vC~~-~~kY~CPrC~~~yCSl~C~ 39 (56)
T 2yqq_A 12 TVVCVICLE-KPKYRCPACRVPYCSVVCF 39 (56)
T ss_dssp CCCCTTTCS-CCSEECTTTCCEESSHHHH
T ss_pred CCccCcCcC-CCeeeCCCCCCCeeCHHHH
Confidence 446889988 321 4799999984
No 22
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=29.94 E-value=12 Score=24.40 Aligned_cols=25 Identities=20% Similarity=0.639 Sum_probs=16.0
Q ss_pred CccccccccccCC------CCeeeecccccc
Q 030621 148 TNTCLVCERSLLD------SFTFCSLGCKVN 172 (174)
Q Consensus 148 ~~~C~~C~R~L~d------~~rFCSL~CKv~ 172 (174)
...|..|++.-.- ...|||-.|...
T Consensus 17 ~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~ 47 (64)
T 2odd_A 17 SESCWNCGRKASETCSGCNTARYCGSFCQHK 47 (64)
T ss_dssp SSSCTTTSSCCCEEETTTSCCEESSHHHHHH
T ss_pred CCcCccccCCCcccCCCCCChhhCCHHHHHH
Confidence 3457777763321 468999988754
No 23
>2fc7_A ZZZ3 protein; structure genomics, ZZ domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=27.92 E-value=25 Score=24.58 Aligned_cols=30 Identities=37% Similarity=0.701 Sum_probs=22.1
Q ss_pred eecccCCC---CcCCccccc------CC-CCCceeEEEec
Q 030621 73 MYCLDCMN---GALCSLCLS------LH-RDHRAIQIRRS 102 (174)
Q Consensus 73 ~FCldC~~---~~~C~~Cl~------~H-~~HrvlQIRRs 102 (174)
+-|++|.+ --||..|-. .| ..|+...|.++
T Consensus 37 ykC~~C~d~~~yDLC~~C~~~g~~~~~H~~~H~~~~i~~~ 76 (82)
T 2fc7_A 37 WHCQDCPPEMSLDFCDSCSDCLHETDIHKEDHQLEPIYRS 76 (82)
T ss_dssp EEESSSCSSSCCEEEGGGTTCCCCCSSCCSSSCEEEECSC
T ss_pred EECCcCCCCcceecHHHHHhCccccCCCCCCCCEEEeeCC
Confidence 67999986 579999953 45 47888777654
No 24
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=27.91 E-value=11 Score=30.00 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=20.8
Q ss_pred hhhcccceeeEEecCcEEEEeeCCCCC
Q 030621 115 KYLDITGVQTYIINSARIVFLNERPQP 141 (174)
Q Consensus 115 kl~D~S~IQtYvINsakVVFLn~RPq~ 141 (174)
+.||+|.||.--.-++-|||-+.+|.+
T Consensus 21 E~fDiSh~~G~~~VasmVVf~~g~p~K 47 (159)
T 2nrr_A 21 EGIDISHLQGKYTVASLVVFEDGFPKK 47 (159)
T ss_dssp EEEEEECC---CCEEEEEEEETTEECG
T ss_pred EEEECCccCCccceEEEEEEeCCccCh
Confidence 358999999988889999999998864
No 25
>2dip_A Zinc finger SWIM domain-containing protein 2; ZZ domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.44.1.6
Probab=23.71 E-value=12 Score=27.22 Aligned_cols=29 Identities=24% Similarity=0.591 Sum_probs=22.1
Q ss_pred eecccCCCCcCCccccc--CCCCCceeEEEe
Q 030621 73 MYCLDCMNGALCSLCLS--LHRDHRAIQIRR 101 (174)
Q Consensus 73 ~FCldC~~~~~C~~Cl~--~H~~HrvlQIRR 101 (174)
.-|+.|.+--+|..|-. .|..|+.++|-+
T Consensus 47 ykC~~C~d~DLC~~C~~~~~H~~H~f~~i~~ 77 (98)
T 2dip_A 47 YKCTECIEYHLCQECFDSYCHLSHTFTFREK 77 (98)
T ss_dssp EEESSSSSCEEEHHHHHTTSGGGSCEEECCS
T ss_pred EECCCCCCccHHHHHHccCCCCCCCeeEecC
Confidence 67889887789999954 577788766655
No 26
>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}
Probab=22.00 E-value=23 Score=24.06 Aligned_cols=24 Identities=25% Similarity=0.686 Sum_probs=20.6
Q ss_pred CCcceecccCCCCcCCcccccC-CCC
Q 030621 69 SECNMYCLDCMNGALCSLCLSL-HRD 93 (174)
Q Consensus 69 nE~N~FCldC~~~~~C~~Cl~~-H~~ 93 (174)
.+-...|+.|. .++|..|+.. |..
T Consensus 42 ~~A~ksCl~C~-~s~C~~hl~~~H~~ 66 (78)
T 2ffw_A 42 QDAVKTCVTCE-VSYCDECLKATHPN 66 (78)
T ss_dssp CBCCEEETTTT-EEECHHHHHHHSCC
T ss_pred CCCeeEccCcc-chhhhhhhHhhcCC
Confidence 56778999998 8999999996 864
No 27
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=20.41 E-value=16 Score=30.21 Aligned_cols=27 Identities=22% Similarity=0.298 Sum_probs=23.2
Q ss_pred hhhcccceeeEEecCcEEEEeeCCCCC
Q 030621 115 KYLDITGVQTYIINSARIVFLNERPQP 141 (174)
Q Consensus 115 kl~D~S~IQtYvINsakVVFLn~RPq~ 141 (174)
+.||+|.||.--.-++-|||-+.+|.+
T Consensus 26 E~fDiSh~~G~~~V~smVvf~~g~p~k 52 (220)
T 2nrt_A 26 EGIDISHLQGKYTVASLVVFEDGFPKK 52 (220)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTEECG
T ss_pred EEEECCccCCccceEEEEEEeCCccCh
Confidence 358999999888889999999998864
Done!