Query 030622
Match_columns 174
No_of_seqs 121 out of 1080
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 16:32:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030622.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030622hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0819 Annexin [Intracellular 100.0 1.1E-44 2.3E-49 296.6 15.6 155 2-167 20-184 (321)
2 KOG0819 Annexin [Intracellular 100.0 8.5E-37 1.8E-41 250.1 15.0 159 2-171 92-264 (321)
3 PF00191 Annexin: Annexin; In 99.8 4.2E-19 9.1E-24 115.8 8.2 64 82-145 1-64 (66)
4 PF00191 Annexin: Annexin; In 99.7 2.2E-17 4.8E-22 107.6 7.0 64 2-75 1-66 (66)
5 smart00335 ANX Annexin repeats 99.6 1E-14 2.2E-19 91.1 5.9 51 95-145 1-51 (53)
6 smart00335 ANX Annexin repeats 99.4 8.8E-13 1.9E-17 82.2 5.2 51 15-75 1-53 (53)
7 PF14003 YlbE: YlbE-like prote 72.0 12 0.00026 24.1 4.6 43 103-145 15-58 (65)
8 COG5118 BDP1 Transcription ini 50.5 18 0.00038 31.5 3.1 36 2-40 371-406 (507)
9 PF14003 YlbE: YlbE-like prote 47.7 43 0.00094 21.6 3.9 40 25-74 17-59 (65)
10 PF08361 TetR_C_2: MAATS-type 46.3 24 0.00051 25.0 2.9 19 156-174 77-95 (121)
11 PF05044 HPD: Homeo-prospero d 45.0 1.3E+02 0.0027 22.7 6.5 125 27-168 2-138 (158)
12 COG5126 FRQ1 Ca2+-binding prot 44.3 1E+02 0.0023 23.4 6.2 70 23-105 9-81 (160)
13 PF14630 ORC5_C: Origin recogn 43.1 1.8E+02 0.0039 23.6 9.6 26 140-165 137-162 (271)
14 PF00249 Myb_DNA-binding: Myb- 37.3 85 0.0018 18.2 5.0 34 2-35 7-42 (48)
15 PF06757 Ins_allergen_rp: Inse 35.0 1.5E+02 0.0032 22.6 5.9 34 67-103 144-177 (179)
16 COG0099 RpsM Ribosomal protein 34.7 1E+02 0.0023 22.3 4.6 48 11-73 34-83 (121)
17 cd00167 SANT 'SWI3, ADA2, N-Co 34.0 82 0.0018 17.0 4.5 34 2-35 5-39 (45)
18 smart00717 SANT SANT SWI3, AD 33.8 86 0.0019 17.2 4.5 35 2-36 7-42 (49)
19 PF04275 P-mevalo_kinase: Phos 32.9 32 0.0007 24.8 1.8 76 34-121 32-111 (116)
20 PF13758 Prefoldin_3: Prefoldi 32.8 1E+02 0.0022 21.6 4.2 35 3-37 34-73 (99)
21 COG1955 FlaJ Archaeal flagella 32.3 2.7E+02 0.0058 25.4 7.7 96 10-131 63-164 (527)
22 PF13720 Acetyltransf_11: Udp 31.5 45 0.00098 22.3 2.3 26 107-132 27-54 (83)
23 TIGR03031 cas_csx12 CRISPR-ass 31.2 1.8E+02 0.0039 27.1 6.5 30 11-40 232-261 (802)
24 PF12645 HTH_16: Helix-turn-he 31.1 1.4E+02 0.003 18.9 4.4 25 6-33 3-27 (65)
25 KOG2027 Spindle pole body prot 28.7 4E+02 0.0087 23.3 9.8 30 109-138 96-125 (388)
26 PF13921 Myb_DNA-bind_6: Myb-l 28.5 92 0.002 18.8 3.2 34 2-35 4-37 (60)
27 COG3184 Uncharacterized protei 28.2 2.3E+02 0.0049 22.1 5.8 62 106-169 106-168 (183)
28 PF12437 GSIII_N: Glutamine sy 26.6 1.4E+02 0.0031 22.8 4.4 41 131-173 15-56 (164)
29 COG3579 PepC Aminopeptidase C 26.2 1.4E+02 0.003 25.9 4.7 24 71-94 170-193 (444)
30 KOG0859 Synaptobrevin/VAMP-lik 24.3 2.2E+02 0.0049 22.6 5.2 48 108-155 75-122 (217)
31 PF08587 UBA_2: Ubiquitin asso 24.1 18 0.00038 21.7 -0.7 28 13-40 12-40 (46)
32 PF03791 KNOX2: KNOX2 domain ; 24.0 1.5E+02 0.0033 18.2 3.4 32 29-75 7-40 (52)
33 PF12098 DUF3574: Protein of u 24.0 71 0.0015 22.5 2.2 19 109-127 73-91 (104)
34 PF10788 DUF2603: Protein of u 21.1 1.3E+02 0.0029 22.3 3.2 34 112-145 64-97 (137)
35 PRK11166 chemotaxis regulator 20.9 4.4E+02 0.0095 21.0 6.5 17 4-20 25-41 (214)
36 KOG0031 Myosin regulatory ligh 20.6 2.3E+02 0.0049 21.8 4.4 18 23-40 21-38 (171)
37 PF09958 DUF2192: Uncharacteri 20.2 4.7E+02 0.01 21.2 7.5 42 5-46 15-72 (231)
No 1
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.1e-44 Score=296.57 Aligned_cols=155 Identities=32% Similarity=0.435 Sum_probs=149.5
Q ss_pred hHHHHHHHHhhCCCCCHHHHHHHhcCCCHHHHHHHHHHh-cccccchHHhhhchHHHHHHHHHhHH-hHHHHHHHHcccc
Q 030622 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLWAMHP 79 (174)
Q Consensus 2 ~Da~~L~~A~kg~gtde~~li~Il~~rs~~~l~~i~~~Y-~~y~~~~~~~~~~~~~L~~~i~~e~~-~~~~~l~~l~~~~ 79 (174)
+||+.|++||+|+||||.+||+||++|||.||+.|+.+| ..||+| |.++|++|+| +|++++++|+.+|
T Consensus 20 ~DAe~L~kA~kG~Gtde~aII~iL~~Rsn~QRq~I~~ayk~~ygkD----------Li~~Lk~ELsG~Fe~~i~al~~~p 89 (321)
T KOG0819|consen 20 QDAEQLRKAMKGFGTDEQAIIDILTHRSNAQRQLIRAAYKTMYGKD----------LIKDLKSELSGDFERAIVALMKPP 89 (321)
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHccCHHHHHHHHHHHHHHHhHH----------HHHHHHHHhCccHHHHHHHHcCCH
Confidence 699999999999999999999999999999999999999 999999 9999999999 9999999999999
Q ss_pred hHHHHHHHHHhhhcCCCChhhHHHHhhcCCHHHHHHHHHHHHHHhCCCHHHHHhhccChhHHHHHHHHHHhhhhcch---
Q 030622 80 WERDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKVHYIASLIASRLLI--- 156 (174)
Q Consensus 80 ~~~dA~~L~~A~~g~gtd~~~li~Il~~rs~~~l~~ik~~Y~~~y~~~L~~~I~~e~sG~~~~~Ll~~~L~~~r~~~--- 156 (174)
+++||+.|++||+|.|||+++||+|+|||||.||++|+++|+..|+++|+++|.++|||+|+++|+ .+++|.|++.
T Consensus 90 ~~~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~sLEeDI~s~TSG~frklLv-~L~~~~R~e~~~v 168 (321)
T KOG0819|consen 90 AEYDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKSLEEDIASDTSGDFRKLLV-SLVQGNRDEGDRV 168 (321)
T ss_pred HHhHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHcccHHHHhhhccCchHHHHHH-HHHhcCCccCCCc
Confidence 999999999999999999999999999999999999999999999999999999999999999999 9999999964
Q ss_pred -----HhHHHHHHHHh
Q 030622 157 -----REYNLLLKKNL 167 (174)
Q Consensus 157 -----~~~a~~l~~~~ 167 (174)
..+|..|+++-
T Consensus 169 d~~la~~dA~~L~~Ag 184 (321)
T KOG0819|consen 169 DDALAKQDAQDLYEAG 184 (321)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 44777787765
No 2
>KOG0819 consensus Annexin [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.5e-37 Score=250.11 Aligned_cols=159 Identities=23% Similarity=0.253 Sum_probs=152.4
Q ss_pred hHHHHHHHHhhCCCCCHHHHHHHhcCCCHHHHHHHHHHh-cccccchHHhhhchHHHHHHHHHhHH-hHHHHHHHHccc-
Q 030622 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLWAMH- 78 (174)
Q Consensus 2 ~Da~~L~~A~kg~gtde~~li~Il~~rs~~~l~~i~~~Y-~~y~~~~~~~~~~~~~L~~~i~~e~~-~~~~~l~~l~~~- 78 (174)
-||+.|++||||.||||.+||||+|+|||.|+++|+++| ..|+++ |+++|.+++| +|+++|+.++.+
T Consensus 92 ~DA~~l~~amkg~gtde~vlIEIlcTRT~~el~~i~~aY~~~y~~s----------LEeDI~s~TSG~frklLv~L~~~~ 161 (321)
T KOG0819|consen 92 YDAKELKKAMKGLGTDEKVLIEILCTRTNEELRAIRQAYQELYKKS----------LEEDIASDTSGDFRKLLVSLVQGN 161 (321)
T ss_pred hHHHHHHHHHhccCcchhhheeeeccCCHHHHHHHHHHHHHHHccc----------HHHHhhhccCchHHHHHHHHHhcC
Confidence 499999999999999999999999999999999999999 999999 9999999999 999999999754
Q ss_pred ----------chHHHHHHHHHhhh-cCCCChhhHHHHhhcCCHHHHHHHHHHHHHHhCCCHHHHHhhccChhHHHHHHHH
Q 030622 79 ----------PWERDARLIKEALK-KGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKVHYIA 147 (174)
Q Consensus 79 ----------~~~~dA~~L~~A~~-g~gtd~~~li~Il~~rs~~~l~~ik~~Y~~~y~~~L~~~I~~e~sG~~~~~Ll~~ 147 (174)
.+..||+.|++|.. ..|||+..++.||++||..||+.++++|++.+|+++++.|+.+++|+|+++|+ .
T Consensus 162 R~e~~~vd~~la~~dA~~L~~Age~k~gtde~~~~~Il~tRs~~qL~~vf~~y~~~~g~diek~I~~e~~gd~~~~ll-a 240 (321)
T KOG0819|consen 162 RDEGDRVDDALAKQDAQDLYEAGEKKWGTDEDKFIRILTTRSKAQLRLVFEEYQRISGKDIEKSIKEEFSGDFEKLLL-A 240 (321)
T ss_pred CccCCCcCHHHHHHHHHHHHHHhhhhccCcHHHHHHHHHhCCHHHHHHHHHHHHHhcchhHHHHHhhccCchHHHHHH-H
Confidence 36789999999975 57899999999999999999999999999999999999999999999999999 9
Q ss_pred HHhhhhcchHhHHHHHHHHhhhhh
Q 030622 148 SLIASRLLIREYNLLLKKNLCALA 171 (174)
Q Consensus 148 ~L~~~r~~~~~~a~~l~~~~~~~~ 171 (174)
++...+++|.+||+.|++||+|++
T Consensus 241 iv~c~~n~~~yFA~~L~~amkg~G 264 (321)
T KOG0819|consen 241 IVKCIRNPPAYFAERLRKAMKGLG 264 (321)
T ss_pred HHHHHcCHHHHHHHHHHHHHhccC
Confidence 999999999999999999999986
No 3
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.79 E-value=4.2e-19 Score=115.76 Aligned_cols=64 Identities=31% Similarity=0.469 Sum_probs=61.8
Q ss_pred HHHHHHHHhhhcCCCChhhHHHHhhcCCHHHHHHHHHHHHHHhCCCHHHHHhhccChhHHHHHH
Q 030622 82 RDARLIKEALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKVHY 145 (174)
Q Consensus 82 ~dA~~L~~A~~g~gtd~~~li~Il~~rs~~~l~~ik~~Y~~~y~~~L~~~I~~e~sG~~~~~Ll 145 (174)
+||+.|++|++|.|+|+..+++|+++||+.|++.|+++|+..||++|+++|++++||+|+++|+
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~L~~~i~~e~sGd~~~~Ll 64 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKDLEEDIKKETSGDFEKLLL 64 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-HHHHHHHHSTHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHHHHHHHHHhCCHHHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999999988
No 4
>PF00191 Annexin: Annexin; InterPro: IPR018502 The annexins (or lipocortins) are a family of proteins that bind to phospholipids in a calcium-dependent manner []. They are distributed ubiquitously in different tissues and cell types of higher and lower eukaryotes, including mammals, fish, birds, Drosophila melanogaster (Fruit fly), Xenopus laevis (African clawed frog), Caenorhabditis elegans , Dictyostelium discoideum (Slime mold) and Neurospora crassa [, ]. Annexins are absent from yeasts and prokaryotes []. The plant annexins are somewhat distinct from those found in other taxa []. Most eukaryotic species have 1-20 annexin (ANX) genes. All annexins share a core domain made up of four similar repeats, each approximately 70 amino acids long []. Each individual annexin repeat (sometimes referred to as endonexin folds) is folded into five alpha-helices, and in turn are wound into a right-handed super-helix; they usually contain a characteristic 'type 2' motif for binding calcium ions with the sequence 'GxGT-[38 residues]-D/E'. Animal and fungal annexins also have variable amino-terminal domains. The core domains of most vertebrate annexins have been analysed by X-ray crystallography, revealing conservation of their secondary and tertiary structures despite only 45-55% amino-acid identity among individual members. The four repeats pack into a structure that resembles a flattened disc, with a slightly convex surface on which the Ca 2+ -binding loops are located and a concave surface at which the amino and carboxyl termini come into close apposition. Annexins are traditionally thought of as calcium-dependent phospholipid-binding proteins, but recent work suggests a more complex set of functions. The famiy has been linked with inhibition of phospholipase activity, exocytosis and endoctyosis, signal transduction, organisation of the extracellular matrix, resistance to reactive oxygen species and DNA replication [].; GO: 0005509 calcium ion binding, 0005544 calcium-dependent phospholipid binding; PDB: 1N44_A 1BC1_A 2IE6_A 2H0M_A 1A8B_A 2H0K_A 1BCW_A 1BCZ_A 1N42_A 1BC0_A ....
Probab=99.72 E-value=2.2e-17 Score=107.60 Aligned_cols=64 Identities=25% Similarity=0.364 Sum_probs=61.1
Q ss_pred hHHHHHHHHhhCCCCCHHHHHHHhcCCCHHHHHHHHHHh-cccccchHHhhhchHHHHHHHHHhHH-hHHHHHHHH
Q 030622 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLW 75 (174)
Q Consensus 2 ~Da~~L~~A~kg~gtde~~li~Il~~rs~~~l~~i~~~Y-~~y~~~~~~~~~~~~~L~~~i~~e~~-~~~~~l~~l 75 (174)
.||+.|++|++|+|+|+..+++|+++||+.|+++|+++| ..||++ |.++|+++++ +|+++++++
T Consensus 1 ~DA~~l~~a~~~~g~de~~li~Il~~rs~~ql~~i~~~Y~~~~g~~----------L~~~i~~e~sGd~~~~Ll~l 66 (66)
T PF00191_consen 1 YDAELLHAALKGWGTDEDVLIEILCTRSPAQLRAIKQAYKKKYGKD----------LEEDIKKETSGDFEKLLLAL 66 (66)
T ss_dssp HHHHHHHHHHSSSSSTHHHHHHHHHHSTHHHHHHHHHHHHHHHSS-----------HHHHHHHHSTHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCChhHhhhHHhhhcccccceeehhhhhhhHHH----------HHHHHHHhCCHHHHHHHHhC
Confidence 499999999999999999999999999999999999999 999999 9999999999 999999875
No 5
>smart00335 ANX Annexin repeats.
Probab=99.55 E-value=1e-14 Score=91.08 Aligned_cols=51 Identities=24% Similarity=0.463 Sum_probs=49.9
Q ss_pred CCChhhHHHHhhcCCHHHHHHHHHHHHHHhCCCHHHHHhhccChhHHHHHH
Q 030622 95 PNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKVHY 145 (174)
Q Consensus 95 gtd~~~li~Il~~rs~~~l~~ik~~Y~~~y~~~L~~~I~~e~sG~~~~~Ll 145 (174)
|||++.|++|+++|++.|+..|+++|+..||++|.++|+++++|+|+++|+
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~L~~~i~~e~sG~~~~~l~ 51 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKDLEDDIKSETSGDFEKLLL 51 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCccHHHHHHHhcChHHHHHHH
Confidence 699999999999999999999999999999999999999999999999987
No 6
>smart00335 ANX Annexin repeats.
Probab=99.38 E-value=8.8e-13 Score=82.23 Aligned_cols=51 Identities=27% Similarity=0.363 Sum_probs=49.0
Q ss_pred CCCHHHHHHHhcCCCHHHHHHHHHHh-cccccchHHhhhchHHHHHHHHHhHH-hHHHHHHHH
Q 030622 15 GVDEKTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLW 75 (174)
Q Consensus 15 gtde~~li~Il~~rs~~~l~~i~~~Y-~~y~~~~~~~~~~~~~L~~~i~~e~~-~~~~~l~~l 75 (174)
||||..|++|+++||+.|+++|+.+| ..||++ |.++|+++++ +|+++++++
T Consensus 1 gtde~~l~~il~~rs~~~~~~i~~~Y~~~~~~~----------L~~~i~~e~sG~~~~~l~~l 53 (53)
T smart00335 1 GTDEKTLIEILASRSNAQLQAIKQAYKKRYGKD----------LEDDIKSETSGDFEKLLLAL 53 (53)
T ss_pred CCCHHHHHHHHHcCCHHHHHHHHHHHHHHhCcc----------HHHHHHHhcChHHHHHHHhC
Confidence 79999999999999999999999999 999999 9999999999 999998864
No 7
>PF14003 YlbE: YlbE-like protein
Probab=71.97 E-value=12 Score=24.14 Aligned_cols=43 Identities=14% Similarity=0.173 Sum_probs=33.7
Q ss_pred HHhhcCCHHHHHHHHHHHHHHhCCCHHHHHhhccCh-hHHHHHH
Q 030622 103 EIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHG-KEKKVHY 145 (174)
Q Consensus 103 ~Il~~rs~~~l~~ik~~Y~~~y~~~L~~~I~~e~sG-~~~~~Ll 145 (174)
-...+|.|.++.+.-.++...|++++-+.|..-..| ..-.+++
T Consensus 15 YR~LsR~P~~l~~fe~~a~~~y~kT~p~rVek~~n~lqMa~MM~ 58 (65)
T PF14003_consen 15 YRILSRNPEELEAFEKEAKHFYKKTIPHRVEKFSNQLQMASMMM 58 (65)
T ss_pred HHHHccCHHHHHHHHHHHHHHHhccccHHHHHHHhHHHHHHHHH
Confidence 345689999999999999999999999998854444 3444444
No 8
>COG5118 BDP1 Transcription initiation factor TFIIIB, Bdp1 subunit [Transcription]
Probab=50.50 E-value=18 Score=31.52 Aligned_cols=36 Identities=28% Similarity=0.317 Sum_probs=29.5
Q ss_pred hHHHHHHHHhhCCCCCHHHHHHHhcCCCHHHHHHHHHHh
Q 030622 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQAFRKEG 40 (174)
Q Consensus 2 ~Da~~L~~A~kg~gtde~~li~Il~~rs~~~l~~i~~~Y 40 (174)
.|.+.+|+|+.-||||-..|-.++-+|+- ++|+.-|
T Consensus 371 ~e~ekFYKALs~wGtdF~LIs~lfP~R~R---kqIKaKf 406 (507)
T COG5118 371 KEIEKFYKALSIWGTDFSLISSLFPNRER---KQIKAKF 406 (507)
T ss_pred HHHHHHHHHHHHhcchHHHHHHhcCchhH---HHHHHHH
Confidence 47889999999999999999898877764 5556566
No 9
>PF14003 YlbE: YlbE-like protein
Probab=47.68 E-value=43 Score=21.59 Aligned_cols=40 Identities=18% Similarity=0.267 Sum_probs=29.5
Q ss_pred hcCCCHHHHHHHHHHh-cccccchHHhhhchHHHHHHHHHhHH--hHHHHHHH
Q 030622 25 LGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM--RFKNAVVL 74 (174)
Q Consensus 25 l~~rs~~~l~~i~~~Y-~~y~~~~~~~~~~~~~L~~~i~~e~~--~~~~~l~~ 74 (174)
..+|.|+++...-.++ ..|++. +...|.+-.. .....++.
T Consensus 17 ~LsR~P~~l~~fe~~a~~~y~kT----------~p~rVek~~n~lqMa~MM~~ 59 (65)
T PF14003_consen 17 ILSRNPEELEAFEKEAKHFYKKT----------IPHRVEKFSNQLQMASMMME 59 (65)
T ss_pred HHccCHHHHHHHHHHHHHHHhcc----------ccHHHHHHHhHHHHHHHHHH
Confidence 4589999999999999 999988 7777766322 44444443
No 10
>PF08361 TetR_C_2: MAATS-type transcriptional repressor, C-terminal region; InterPro: IPR013572 This entry is named after the various transcriptional regulatory proteins that it contains, including MtrR (Q6RV06 from SWISSPROT), AcrR (P34000 from SWISSPROT), ArpR (Q9KJC4 from SWISSPROT), TtgR (Q9AIU0 from SWISSPROT) and SmeT (Q8KLP4 from SWISSPROT). These are members of the TetR (tetracycline resistance) family of transcriptional repressors, that are involved in the control of expression of multidrug resistance proteins [, , ]. ; GO: 0003677 DNA binding; PDB: 3BCG_B 2QOP_A 2UXP_B 2XDN_C 2UXH_A 2UXI_B 2UXO_A 2UXU_B 2WUI_A 2W53_A ....
Probab=46.26 E-value=24 Score=25.02 Aligned_cols=19 Identities=26% Similarity=0.469 Sum_probs=13.8
Q ss_pred hHhHHHHHHHHhhhhhccC
Q 030622 156 IREYNLLLKKNLCALASSW 174 (174)
Q Consensus 156 ~~~~a~~l~~~~~~~~~~~ 174 (174)
|...|..|...+.|++.+|
T Consensus 77 ~~~AA~~l~a~~~Gl~~~W 95 (121)
T PF08361_consen 77 PRLAAIMLHALLSGLIQNW 95 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4557777777778887776
No 11
>PF05044 HPD: Homeo-prospero domain; InterPro: IPR007738 The homeobox gene Prox1 is expressed in a subpopulation of endothelial cells that, after budding from veins, gives rise to the mammalian lymphatic system []. Prox1 has been found to be an early specific marker for the developing liver and pancreas in the mammalian foregut endoderm []. This family contains an atypical homeobox domain.; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2LMD_A 1XPX_A 1MIJ_A.
Probab=44.99 E-value=1.3e+02 Score=22.71 Aligned_cols=125 Identities=13% Similarity=0.182 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHh--cccccchHHhhhchHHHHHHHHHhHH--hHHHH----HHHHcccchHH----HHHHHHHhhhcC
Q 030622 27 NSQPEHRQAFRKEG--GFFAEDERRFERWNDHHVKLLKHEFM--RFKNA----VVLWAMHPWER----DARLIKEALKKG 94 (174)
Q Consensus 27 ~rs~~~l~~i~~~Y--~~y~~~~~~~~~~~~~L~~~i~~e~~--~~~~~----l~~l~~~~~~~----dA~~L~~A~~g~ 94 (174)
+.||.|++.-+-.| ..|-. ...|+.-++ .|.+. |+.|+.+--++ .-+..+.|+...
T Consensus 2 ~Ltp~HLkKaKlMFfytRYPs------------s~~LK~yFpDv~Fnr~~TsQLiKWFSNFREFyYiQMEK~ARqa~~eG 69 (158)
T PF05044_consen 2 GLTPMHLKKAKLMFFYTRYPS------------SNMLKSYFPDVKFNRCNTSQLIKWFSNFREFYYIQMEKFARQAVSEG 69 (158)
T ss_dssp SS-HHHHHHHHHHCTT-SS-H------------HHHHHHCTTTS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCChHHHhhhhheeeeecCCc------------hHHHHHhCchhhhhhhhHHHHHHHhccchhHHHHHHHHHHHHHHHcc
Confidence 35788888887777 66653 334444444 34433 34555542222 234445566532
Q ss_pred CCChhhHHHHhhcCCHHHHHHHHHHHHHHhCCCHHHHHhhccChhHHHHHHHHHHhhhhcchHhHHHHHHHHhh
Q 030622 95 PNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKVHYIASLIASRLLIREYNLLLKKNLC 168 (174)
Q Consensus 95 gtd~~~li~Il~~rs~~~l~~ik~~Y~~~y~~~L~~~I~~e~sG~~~~~Ll~~~L~~~r~~~~~~a~~l~~~~~ 168 (174)
-++.+ +|.++|..+-.+.+...|.+...-..-+....-..-..+.+.. +..+.+|....--..++|-+|
T Consensus 70 v~~~~---~l~V~rdsELfr~LN~HYNk~N~~evP~~Fl~v~~~tLrEFf~--AI~~gkD~dpsWKK~IYKvI~ 138 (158)
T PF05044_consen 70 VKNAD---DLRVTRDSELFRVLNMHYNKNNDFEVPDRFLEVVQITLREFFN--AIQAGKDSDPSWKKPIYKVIS 138 (158)
T ss_dssp -S-GG---GSSSS-TTCHHHHHHHHHHTT-STT--HHHHHHHHHHHHHHHH--HHHCTCCCSTCCCHHHHHHHH
T ss_pred CCcHH---HeeeccchHHHHHHHhhcccCCCccCchhHHHHHHHHHHHHHH--HHHcCCCCCccccHHHHHHHH
Confidence 24443 6889999888889999998876555545544444455666654 344445544444444444444
No 12
>COG5126 FRQ1 Ca2+-binding protein (EF-Hand superfamily) [Signal transduction mechanisms / Cytoskeleton / Cell division and chromosome partitioning / General function prediction only]
Probab=44.28 E-value=1e+02 Score=23.40 Aligned_cols=70 Identities=10% Similarity=0.141 Sum_probs=43.4
Q ss_pred HHhcCCCHHHHHHHHHHhcccccc-hHHhhhchHHHHHHHHHhHHhHHHHHHHHcccchHHHHHHHHHhhhc--CCCChh
Q 030622 23 SILGNSQPEHRQAFRKEGGFFAED-ERRFERWNDHHVKLLKHEFMRFKNAVVLWAMHPWERDARLIKEALKK--GPNSNS 99 (174)
Q Consensus 23 ~Il~~rs~~~l~~i~~~Y~~y~~~-~~~~~~~~~~L~~~i~~e~~~~~~~l~~l~~~~~~~dA~~L~~A~~g--~gtd~~ 99 (174)
-....-+.+|+++++++|..+.++ .|+ |-. +++.+++-.+=.+|....+..+-..+.. ...+..
T Consensus 9 ~~~~~~t~~qi~~lkeaF~l~D~d~~G~-----------I~~--~el~~ilr~lg~~~s~~ei~~l~~~~d~~~~~idf~ 75 (160)
T COG5126 9 LTFTQLTEEQIQELKEAFQLFDRDSDGL-----------IDR--NELGKILRSLGFNPSEAEINKLFEEIDAGNETVDFP 75 (160)
T ss_pred hhcccCCHHHHHHHHHHHHHhCcCCCCC-----------CcH--HHHHHHHHHcCCCCcHHHHHHHHHhccCCCCccCHH
Confidence 344566899999999999555543 011 100 1566666666567888888888888875 223444
Q ss_pred hHHHHh
Q 030622 100 VIVEIA 105 (174)
Q Consensus 100 ~li~Il 105 (174)
-++.++
T Consensus 76 ~Fl~~m 81 (160)
T COG5126 76 EFLTVM 81 (160)
T ss_pred HHHHHH
Confidence 444444
No 13
>PF14630 ORC5_C: Origin recognition complex (ORC) subunit 5 C-terminus
Probab=43.09 E-value=1.8e+02 Score=23.60 Aligned_cols=26 Identities=31% Similarity=0.162 Sum_probs=21.0
Q ss_pred HHHHHHHHHHhhhhcchHhHHHHHHH
Q 030622 140 EKKVHYIASLIASRLLIREYNLLLKK 165 (174)
Q Consensus 140 ~~~~Ll~~~L~~~r~~~~~~a~~l~~ 165 (174)
+-++||.+.--++++++..|..+.-+
T Consensus 137 ~sK~LLIAAYLAS~Np~~~D~r~F~k 162 (271)
T PF14630_consen 137 YSKYLLIAAYLASYNPPRTDKRLFSK 162 (271)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHh
Confidence 57777768888999999999887654
No 14
>PF00249 Myb_DNA-binding: Myb-like DNA-binding domain; InterPro: IPR014778 The retroviral oncogene v-myb, and its cellular counterpart c-myb, encode nuclear DNA-binding proteins. These belong to the SANT domain family that specifically recognise the sequence YAAC(G/T)G [, ]. In myb, one of the most conserved regions consisting of three tandem repeats has been shown to be involved in DNA-binding [].; PDB: 1X41_A 2XAF_B 2XAG_B 2XAH_B 2UXN_B 2Y48_B 2XAQ_B 2X0L_B 2IW5_B 2XAJ_B ....
Probab=37.30 E-value=85 Score=18.15 Aligned_cols=34 Identities=21% Similarity=0.231 Sum_probs=28.2
Q ss_pred hHHHHHHHHhhCCCCC-HHHHHHHhc-CCCHHHHHH
Q 030622 2 AEIEALIKAFSGHGVD-EKTVISILG-NSQPEHRQA 35 (174)
Q Consensus 2 ~Da~~L~~A~kg~gtd-e~~li~Il~-~rs~~~l~~ 35 (174)
.|-+.|.++++-.|.+ =..|-+-+. +||+.|+..
T Consensus 7 eE~~~l~~~v~~~g~~~W~~Ia~~~~~~Rt~~qc~~ 42 (48)
T PF00249_consen 7 EEDEKLLEAVKKYGKDNWKKIAKRMPGGRTAKQCRS 42 (48)
T ss_dssp HHHHHHHHHHHHSTTTHHHHHHHHHSSSSTHHHHHH
T ss_pred HHHHHHHHHHHHhCCcHHHHHHHHcCCCCCHHHHHH
Confidence 4667899999999988 788888888 999988763
No 15
>PF06757 Ins_allergen_rp: Insect allergen related repeat, nitrile-specifier detoxification; InterPro: IPR010629 This entry represents several insect specific allergen repeats. These repeats are commonly found in various proteins from cockroaches, fruit flies and mosquitos. It has been suggested that the repeat sequences have evolved by duplication of an ancestral amino acid domain, which may have arisen from the mitochondrial energy transfer proteins []. This family exemplifies a case of novel gene evolution. The case in point is the arms-race between plants and their infective insective herbivores in the area of the glucosinolate-myrosinase system. Brassicas have developed the glucosinolate-myrosinase system as chemical defence mechanism against the insects, and consequently the insects have adapted to produce a detoxifying molecule, nitrile-specifier protein (NSP). NSP is present in the Pieris rapae (Cabbage white butterfly). NSP is structurally different from and has no amino acid homology to any known detoxifying enzymes, and it appears to have arisen by a process of domain and gene duplication of a sequence of unknown function that is widespread in insect species and referred to as insect-allergen-repeat protein. Thus this family is found either as a single domain or as a multiple repeat-domain [].
Probab=35.00 E-value=1.5e+02 Score=22.56 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=18.3
Q ss_pred hHHHHHHHHcccchHHHHHHHHHhhhcCCCChhhHHH
Q 030622 67 RFKNAVVLWAMHPWERDARLIKEALKKGPNSNSVIVE 103 (174)
Q Consensus 67 ~~~~~l~~l~~~~~~~dA~~L~~A~~g~gtd~~~li~ 103 (174)
+|+.++-.++.+|. .+.+...++..|-|-+.+++
T Consensus 144 ef~~~~~~~~~~~~---~~~~~~~L~~~Gvdv~~l~~ 177 (179)
T PF06757_consen 144 EFQQLYNALWASPE---FQRLLNELRENGVDVDYLLE 177 (179)
T ss_pred HHHHHHHHHHcCHH---HHHHHHHHHHcCCCHHHHHH
Confidence 66666666655442 23344445555666655554
No 16
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis]
Probab=34.72 E-value=1e+02 Score=22.34 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=35.7
Q ss_pred hhCCCCCHHHHHHHhcCCCHHHHHHHHHHh-cccccchHHhhhchHHHHHHHHHhHH-hHHHHHH
Q 030622 11 FSGHGVDEKTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVV 73 (174)
Q Consensus 11 ~kg~gtde~~li~Il~~rs~~~l~~i~~~Y-~~y~~~~~~~~~~~~~L~~~i~~e~~-~~~~~l~ 73 (174)
|+..|.|+..-+.=| |.+|+..|.+.- +.|. ++.+|..++. +.+.++-
T Consensus 34 ~~~~gi~~~~r~~eL---teeei~~ir~~i~~~~~------------vegDLr~~v~~dIkRl~~ 83 (121)
T COG0099 34 CKKAGIDPDKRVGEL---TEEEIERLRDAIQNKYL------------VEGDLRREVRMDIKRLMK 83 (121)
T ss_pred HHHcCCCHhHhhccC---CHHHHHHHHHHHHhcCe------------ehhHHHHHHHHHHHHHHH
Confidence 344566766655444 899999999888 6777 8889999988 8776653
No 17
>cd00167 SANT 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is also found in regulatory transcriptional repressor complexes where it also binds DNA.
Probab=34.04 E-value=82 Score=17.01 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=26.7
Q ss_pred hHHHHHHHHhhCCC-CCHHHHHHHhcCCCHHHHHH
Q 030622 2 AEIEALIKAFSGHG-VDEKTVISILGNSQPEHRQA 35 (174)
Q Consensus 2 ~Da~~L~~A~kg~g-tde~~li~Il~~rs~~~l~~ 35 (174)
.|-..|..++...| .+=..|.+.+.+||..+++.
T Consensus 5 eE~~~l~~~~~~~g~~~w~~Ia~~~~~rs~~~~~~ 39 (45)
T cd00167 5 EEDELLLEAVKKYGKNNWEKIAKELPGRTPKQCRE 39 (45)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHhHcCCCCHHHHHH
Confidence 45667888888888 77788888888899887763
No 18
>smart00717 SANT SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains.
Probab=33.84 E-value=86 Score=17.20 Aligned_cols=35 Identities=20% Similarity=0.137 Sum_probs=27.5
Q ss_pred hHHHHHHHHhhCCC-CCHHHHHHHhcCCCHHHHHHH
Q 030622 2 AEIEALIKAFSGHG-VDEKTVISILGNSQPEHRQAF 36 (174)
Q Consensus 2 ~Da~~L~~A~kg~g-tde~~li~Il~~rs~~~l~~i 36 (174)
+|...|..++...| .+=..|-+.+.+||+.++..-
T Consensus 7 ~E~~~l~~~~~~~g~~~w~~Ia~~~~~rt~~~~~~~ 42 (49)
T smart00717 7 EEDELLIELVKKYGKNNWEKIAKELPGRTAEQCRER 42 (49)
T ss_pred HHHHHHHHHHHHHCcCCHHHHHHHcCCCCHHHHHHH
Confidence 45677888888888 787888888888998877643
No 19
>PF04275 P-mevalo_kinase: Phosphomevalonate kinase ; InterPro: IPR005919 Phosphomevalonate kinase (2.7.4.2 from EC) catalyzes the phosphorylation of 5-phosphomevalonate into 5-diphosphomevalonate, an essential step in isoprenoid biosynthesis via the mevalonate pathway. In an example of nonorthologous gene displacement, two different types of phosphomevalonate kinase are found - the higher eukaryotic form and the ERG8 type. This model represents the form of the enzyme found in animals. ; GO: 0004631 phosphomevalonate kinase activity, 0006695 cholesterol biosynthetic process, 0005737 cytoplasm; PDB: 3CH4_B.
Probab=32.91 E-value=32 Score=24.79 Aligned_cols=76 Identities=16% Similarity=0.330 Sum_probs=36.6
Q ss_pred HHHHHHh-cccccchHHhhhchHHHHHHHHH-hHH-hHHHHHHHHcccchHHHHHHHH-HhhhcCCCChhhHHHHhhcCC
Q 030622 34 QAFRKEG-GFFAEDERRFERWNDHHVKLLKH-EFM-RFKNAVVLWAMHPWERDARLIK-EALKKGPNSNSVIVEIASTRS 109 (174)
Q Consensus 34 ~~i~~~Y-~~y~~~~~~~~~~~~~L~~~i~~-e~~-~~~~~l~~l~~~~~~~dA~~L~-~A~~g~gtd~~~li~Il~~rs 109 (174)
..|++.| ..+|-| |...+.. +.. .++..|..|.......|....- .++... .+.++++ |--.|-
T Consensus 32 ~p~K~~yA~~~glD----------l~~LL~d~~YKE~~R~~mi~w~e~~r~~dp~~Fcr~a~~~~-~~~~V~i-Isd~Rr 99 (116)
T PF04275_consen 32 DPIKREYAEAHGLD----------LDRLLSDRAYKEQYRPDMIAWGEEQRNQDPGFFCRAAVEEA-ADVDVWI-ISDMRR 99 (116)
T ss_dssp HHHHHHHHHTTT-----------------------SSHHHHHHHHHHHHHHH-TTTTHHHHSBT-----SEEE-E----S
T ss_pred hHHHHHHHHHhCcC----------HHHHhcCcchHHHHHHHHHHHHHHHHhhCcchHHHHHHHhh-ccCCeEE-EeCCCc
Confidence 4688899 989987 7776665 333 6899999997554333333222 344443 3444442 334588
Q ss_pred HHHHHHHHHHHH
Q 030622 110 SDELLGARKAYH 121 (174)
Q Consensus 110 ~~~l~~ik~~Y~ 121 (174)
+.++.-.+..|.
T Consensus 100 ~tdv~~F~~~~~ 111 (116)
T PF04275_consen 100 KTDVAWFRENYG 111 (116)
T ss_dssp HHHHHHHHHHHG
T ss_pred ccHHHHHHHHcc
Confidence 999987777664
No 20
>PF13758 Prefoldin_3: Prefoldin subunit
Probab=32.81 E-value=1e+02 Score=21.56 Aligned_cols=35 Identities=26% Similarity=0.372 Sum_probs=25.7
Q ss_pred HHHHHHHHhhCCCCCHHHHHHHhcC-----CCHHHHHHHH
Q 030622 3 EIEALIKAFSGHGVDEKTVISILGN-----SQPEHRQAFR 37 (174)
Q Consensus 3 Da~~L~~A~kg~gtde~~li~Il~~-----rs~~~l~~i~ 37 (174)
|...+++-++|...++..|-+||+. ||++|+-.+.
T Consensus 34 ~l~~i~r~f~g~lv~~kEi~~ilG~~~~i~Rt~~Qvv~~l 73 (99)
T PF13758_consen 34 DLLRIRRDFGGSLVTEKEIKEILGEGQGITRTREQVVDVL 73 (99)
T ss_pred HHHHHHHhcCcccccHHHHHHHhCCCCCCCcCHHHHHHHH
Confidence 4556777777777888888888886 7777766543
No 21
>COG1955 FlaJ Archaeal flagella assembly protein J [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=32.29 E-value=2.7e+02 Score=25.40 Aligned_cols=96 Identities=21% Similarity=0.217 Sum_probs=59.8
Q ss_pred HhhCCCCCHHHHHHHhcCCCHHHHHHHHHHh-cccccchHHhhhchHHHHHHHHHhHH-hHHHHHHHHccc-chHHHHHH
Q 030622 10 AFSGHGVDEKTVISILGNSQPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLWAMH-PWERDARL 86 (174)
Q Consensus 10 A~kg~gtde~~li~Il~~rs~~~l~~i~~~Y-~~y~~~~~~~~~~~~~L~~~i~~e~~-~~~~~l~~l~~~-~~~~dA~~ 86 (174)
++...+.+.+.+.++++. +++....++.+ .. ..+-++.+ .|.+++-.+.+. |.+..++.
T Consensus 63 ~LsTs~i~r~~If~~ls~--~~eyg~~~~~f~kI----------------~~L~~~Wgy~~a~Ac~~iA~k~~~~~l~df 124 (527)
T COG1955 63 SLSTSDIPRDDIFRILSR--KEEYGPLRKEFRKI----------------YNLVDKWGYSLAEACRFIAKKTPSEILADF 124 (527)
T ss_pred HHhccCCCHHHHHHHhcc--hhhhhhHHHHHHHH----------------HHHHHHhCcchHHHHHHHHhhCcHHHHHHH
Confidence 344556677778888776 55555555444 32 33444666 788888777654 66665555
Q ss_pred HH---HhhhcCCCChhhHHHHhhcCCHHHHHHHHHHHHHHhCCCHHHH
Q 030622 87 IK---EALKKGPNSNSVIVEIASTRSSDELLGARKAYHSLFEHSIEED 131 (174)
Q Consensus 87 L~---~A~~g~gtd~~~li~Il~~rs~~~l~~ik~~Y~~~y~~~L~~~ 131 (174)
|. .|+.. |-+.+ +.+- .|++.+.+.|+..|.+.|+..
T Consensus 125 L~Rla~ai~s-Ge~~~---eFl~----~E~~~~~~~y~~~Yer~LeSl 164 (527)
T COG1955 125 LDRLAYALDS-GEDLK---EFLE----REQDTTMDEYETEYERALESL 164 (527)
T ss_pred HHHHHHhhhc-CCcHH---HHHH----HHHHHHHHHHHHHHHHHHHHH
Confidence 44 44544 33332 3332 688889999999998888654
No 22
>PF13720 Acetyltransf_11: Udp N-acetylglucosamine O-acyltransferase; Domain 2; PDB: 3I3A_A 3I3X_A 3HSQ_B 2JF2_A 1LXA_A 2AQ9_A 2QIV_X 2QIA_A 2JF3_A 4EQY_F ....
Probab=31.47 E-value=45 Score=22.26 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=18.4
Q ss_pred cCCHHHHHHHHHHHHHHhCC--CHHHHH
Q 030622 107 TRSSDELLGARKAYHSLFEH--SIEEDV 132 (174)
Q Consensus 107 ~rs~~~l~~ik~~Y~~~y~~--~L~~~I 132 (174)
+-++.++..|+++|+..|.. ++.+.+
T Consensus 27 Gfs~~~i~~l~~ayr~l~~~~~~~~~a~ 54 (83)
T PF13720_consen 27 GFSKEEISALRRAYRILFRSGLTLEEAL 54 (83)
T ss_dssp TS-HHHHHHHHHHHHHHHTSSS-HHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34678999999999999964 344443
No 23
>TIGR03031 cas_csx12 CRISPR-associated protein, Csx12 family. Members of this family of CRISPR-associated (cas) protein are found, so far, in CRISPR/cas loci in Wolinella succinogenes DSM 1740, Legionella pneumophila str. Paris, and Francisella tularensis, where the last probably is an example of a degenerate CRISPR locus, having neither repeats nor a functional Cas1. The characteristic repeat length is 37 base pairs and period is about 72. One region of this large protein shows sequence similarity to PFAM model pfam01844, HNH endonuclease.
Probab=31.21 E-value=1.8e+02 Score=27.14 Aligned_cols=30 Identities=13% Similarity=0.104 Sum_probs=24.2
Q ss_pred hhCCCCCHHHHHHHhcCCCHHHHHHHHHHh
Q 030622 11 FSGHGVDEKTVISILGNSQPEHRQAFRKEG 40 (174)
Q Consensus 11 ~kg~gtde~~li~Il~~rs~~~l~~i~~~Y 40 (174)
++.....-..+..++++-||-|+..+++.|
T Consensus 232 ~k~snl~~~~l~nLvGnlSN~qlk~LrrYf 261 (802)
T TIGR03031 232 KKKSNLPSVCLSNLLGNLSNLQLKNLRRYF 261 (802)
T ss_pred hhccCCchhhHHHHhhhhhhhhHHHHHHHh
Confidence 333334557788999999999999999999
No 24
>PF12645 HTH_16: Helix-turn-helix domain; InterPro: IPR024760 This domain appears to be a helix-turn-helix domain, suggesting a transcriptional regulatory protein. Some proteins with this domain are annotated as conjugative transposon proteins.
Probab=31.14 E-value=1.4e+02 Score=18.94 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=18.3
Q ss_pred HHHHHhhCCCCCHHHHHHHhcCCCHHHH
Q 030622 6 ALIKAFSGHGVDEKTVISILGNSQPEHR 33 (174)
Q Consensus 6 ~L~~A~kg~gtde~~li~Il~~rs~~~l 33 (174)
.|.+|.+| |+.++.+||....|-=.
T Consensus 3 vI~~A~~G---D~~A~~~IL~~y~~yI~ 27 (65)
T PF12645_consen 3 VIKAAKQG---DPEAMEEILKHYEPYIS 27 (65)
T ss_pred HHHHHHcC---CHHHHHHHHHHHHHHHH
Confidence 45667766 89999999987766444
No 25
>KOG2027 consensus Spindle pole body protein [Cytoskeleton]
Probab=28.67 E-value=4e+02 Score=23.30 Aligned_cols=30 Identities=13% Similarity=0.149 Sum_probs=26.2
Q ss_pred CHHHHHHHHHHHHHHhCCCHHHHHhhccCh
Q 030622 109 SSDELLGARKAYHSLFEHSIEEDVASHIHG 138 (174)
Q Consensus 109 s~~~l~~ik~~Y~~~y~~~L~~~I~~e~sG 138 (174)
--.+|+.|++.|..+||+++.........|
T Consensus 96 EvpEL~~i~~~f~~kYGk~f~~~a~~l~p~ 125 (388)
T KOG2027|consen 96 EVPELREIRDLFVKKYGKEFVKAAIELRPG 125 (388)
T ss_pred ccHHHHHHHHHHHHHHhHHHHHHHHhcccc
Confidence 357999999999999999999998877644
No 26
>PF13921 Myb_DNA-bind_6: Myb-like DNA-binding domain; PDB: 1A5J_A 1MBH_A 1GV5_A 1H89_C 1IDY_A 1MBK_A 1IDZ_A 1H88_C 1GVD_A 1MBG_A ....
Probab=28.53 E-value=92 Score=18.75 Aligned_cols=34 Identities=29% Similarity=0.369 Sum_probs=22.6
Q ss_pred hHHHHHHHHhhCCCCCHHHHHHHhcCCCHHHHHH
Q 030622 2 AEIEALIKAFSGHGVDEKTVISILGNSQPEHRQA 35 (174)
Q Consensus 2 ~Da~~L~~A~kg~gtde~~li~Il~~rs~~~l~~ 35 (174)
+|-+.|...++..|.+=..|-+.|.+||+.+++.
T Consensus 4 eEd~~L~~~~~~~g~~W~~Ia~~l~~Rt~~~~~~ 37 (60)
T PF13921_consen 4 EEDELLLELVKKYGNDWKKIAEHLGNRTPKQCRN 37 (60)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHSTTS-HHHHHH
T ss_pred HHHHHHHHHHHHHCcCHHHHHHHHCcCCHHHHHH
Confidence 3556777777766667778888886688866653
No 27
>COG3184 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.20 E-value=2.3e+02 Score=22.10 Aligned_cols=62 Identities=18% Similarity=0.027 Sum_probs=40.8
Q ss_pred hcCCHHHHHHHHHHHHHHhCCCHHHHHhhccChhHHHHHHHHHHhh-hhcchHhHHHHHHHHhhh
Q 030622 106 STRSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKVHYIASLIA-SRLLIREYNLLLKKNLCA 169 (174)
Q Consensus 106 ~~rs~~~l~~ik~~Y~~~y~~~L~~~I~~e~sG~~~~~Ll~~~L~~-~r~~~~~~a~~l~~~~~~ 169 (174)
-.-|..|+..|-.-|.+--|++|-+.-= -.+-+.-++-. .+..| +|+...+..+-|.+-.|+
T Consensus 106 ~~FT~eEl~ai~aFY~SpaGkklL~k~P-i~trel~kaa~-~w~agiardl~~~~me~L~k~~g~ 168 (183)
T COG3184 106 KIFTEEELNAITAFYGSPAGKKLLDKGP-ILTRELMKAAQ-IWTAGIARDLTPELMEDLDKIIGA 168 (183)
T ss_pred HhcCHHHHHHHHHHHcCchhHHHHhcCc-HhHHHHHHHHH-HHHhhhhhhhHHHHHHHHHHHhCc
Confidence 3457899999999998888888765411 11122222222 34456 888888888888887774
No 28
>PF12437 GSIII_N: Glutamine synthetase type III N terminal ; InterPro: IPR022147 This domain family is found in bacteria and eukaryotes, and is approximately 160 amino acids in length. The family is found in association with PF00120 from PFAM. This family is the N-terminal region of glutamine synthetase type III which is one of the enzymes responsible for generation of glutamine through conversion glutamate to glutamine by the incorporation of ammonia (NH3). ; GO: 0004356 glutamate-ammonia ligase activity; PDB: 3O6X_D.
Probab=26.62 E-value=1.4e+02 Score=22.77 Aligned_cols=41 Identities=12% Similarity=0.052 Sum_probs=24.3
Q ss_pred HHhhccChh-HHHHHHHHHHhhhhcchHhHHHHHHHHhhhhhcc
Q 030622 131 DVASHIHGK-EKKVHYIASLIASRLLIREYNLLLKKNLCALASS 173 (174)
Q Consensus 131 ~I~~e~sG~-~~~~Ll~~~L~~~r~~~~~~a~~l~~~~~~~~~~ 173 (174)
.++..++-+ |+++. ..+.....-....|..+.++|+.|+-+
T Consensus 15 ~M~~~Lpk~vy~~~~--~~i~~g~~ld~~~Ad~VA~amk~WA~~ 56 (164)
T PF12437_consen 15 VMKERLPKDVYKKLK--KTIEKGEPLDPEIADVVAAAMKEWAIE 56 (164)
T ss_dssp HHHHHS-HHHHHHHH--HHHTT-----HHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCHHHHHHHH--HHHHcCCCCCHHHHHHHHHHHHHHHHH
Confidence 345555553 66654 355554555688999999999999854
No 29
>COG3579 PepC Aminopeptidase C [Amino acid transport and metabolism]
Probab=26.20 E-value=1.4e+02 Score=25.92 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=17.7
Q ss_pred HHHHHcccchHHHHHHHHHhhhcC
Q 030622 71 AVVLWAMHPWERDARLIKEALKKG 94 (174)
Q Consensus 71 ~l~~l~~~~~~~dA~~L~~A~~g~ 94 (174)
-+.+++......||+.|+.|++..
T Consensus 170 ~ln~~Ln~~LR~dAqiLR~a~~eg 193 (444)
T COG3579 170 ELNALLNKLLRQDAQILRDALKEG 193 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344555556788999999999863
No 30
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.29 E-value=2.2e+02 Score=22.60 Aligned_cols=48 Identities=10% Similarity=-0.022 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHhhccChhHHHHHHHHHHhhhhcc
Q 030622 108 RSSDELLGARKAYHSLFEHSIEEDVASHIHGKEKKVHYIASLIASRLL 155 (174)
Q Consensus 108 rs~~~l~~ik~~Y~~~y~~~L~~~I~~e~sG~~~~~Ll~~~L~~~r~~ 155 (174)
+.-.-|..|++.|.+.||.....++.-...-.|.+.|-..+.-.+-++
T Consensus 75 ipfaFLe~Ik~~F~k~YG~~a~ta~AysmN~EFs~vL~qqm~y~s~~p 122 (217)
T KOG0859|consen 75 IPFAFLERIKEDFKKRYGGGAHTAVAYSMNKEFSSVLKQQMQYCSEHP 122 (217)
T ss_pred ccHHHHHHHHHHHHHHhccchhHHHHhHhHHHHHHHHHHHHHHHHcCc
Confidence 345689999999999999998888877777778777764544444333
No 31
>PF08587 UBA_2: Ubiquitin associated domain (UBA) ; InterPro: IPR013896 This is a UBA (ubiquitin associated) protein []. Ubiquitin is involved in intracellular proteolysis. ; GO: 0004674 protein serine/threonine kinase activity; PDB: 3H4J_B.
Probab=24.12 E-value=18 Score=21.74 Aligned_cols=28 Identities=18% Similarity=0.337 Sum_probs=17.1
Q ss_pred CCCCCHHHHHHHhcCCCH-HHHHHHHHHh
Q 030622 13 GHGVDEKTVISILGNSQP-EHRQAFRKEG 40 (174)
Q Consensus 13 g~gtde~~li~Il~~rs~-~~l~~i~~~Y 40 (174)
.+|-+.+-|.+.|-+-.| ++-.+|+.+|
T Consensus 12 tMGY~kdeI~eaL~~~~~~~~~neIkDAY 40 (46)
T PF08587_consen 12 TMGYDKDEIYEALESSEPSPQSNEIKDAY 40 (46)
T ss_dssp TT---HHHHHHHCCSSS------SSCCHH
T ss_pred HhCCCHHHHHHHHHcCCCcchHHHHHHHH
Confidence 478899999999988766 7888888888
No 32
>PF03791 KNOX2: KNOX2 domain ; InterPro: IPR005541 The MEINOX region is comprised of two domains, KNOX1 and KNOX2. KNOX1 plays a role in suppressing target gene expression. KNOX2, essential for function, is thought to be necessary for homo-dimerization [].; GO: 0003677 DNA binding, 0005634 nucleus
Probab=24.02 E-value=1.5e+02 Score=18.18 Aligned_cols=32 Identities=16% Similarity=0.175 Sum_probs=21.6
Q ss_pred CHHHHHHHHHHh-cccccchHHhhhchHHHHHHHHHhHH-hHHHHHHHH
Q 030622 29 QPEHRQAFRKEG-GFFAEDERRFERWNDHHVKLLKHEFM-RFKNAVVLW 75 (174)
Q Consensus 29 s~~~l~~i~~~Y-~~y~~~~~~~~~~~~~L~~~i~~e~~-~~~~~l~~l 75 (174)
..+++.....+| . +....+.++. +|+.++..+
T Consensus 7 ~dpELDqFMeaYc~---------------~L~kykeeL~~p~~EA~~f~ 40 (52)
T PF03791_consen 7 ADPELDQFMEAYCD---------------MLVKYKEELQRPFQEAMEFC 40 (52)
T ss_pred CCccHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence 456788888888 5 4555566666 777665544
No 33
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=24.02 E-value=71 Score=22.54 Aligned_cols=19 Identities=21% Similarity=0.455 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHHHHhCCC
Q 030622 109 SSDELLGARKAYHSLFEHS 127 (174)
Q Consensus 109 s~~~l~~ik~~Y~~~y~~~ 127 (174)
+...+.+|+++|++.|+..
T Consensus 73 ~~~~i~~Ir~~Yk~rF~Qe 91 (104)
T PF12098_consen 73 AEARIEAIREAYKQRFQQE 91 (104)
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4578899999999999753
No 34
>PF10788 DUF2603: Protein of unknown function (DUF2603); InterPro: IPR019724 This entry represents a conserved protein in epsilon-Proteobacteria. The function is not known.
Probab=21.13 E-value=1.3e+02 Score=22.30 Aligned_cols=34 Identities=18% Similarity=0.182 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhccChhHHHHHH
Q 030622 112 ELLGARKAYHSLFEHSIEEDVASHIHGKEKKVHY 145 (174)
Q Consensus 112 ~l~~ik~~Y~~~y~~~L~~~I~~e~sG~~~~~Ll 145 (174)
=+..++++++..|.--|+++|...+.=||.++..
T Consensus 64 Li~~~k~~~~E~f~lkLEk~I~q~~PIDF~Dvw~ 97 (137)
T PF10788_consen 64 LIESLKNAQKENFELKLEKDILQQMPIDFEDVWA 97 (137)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 4567899999999999999999999999999866
No 35
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=20.92 E-value=4.4e+02 Score=21.04 Aligned_cols=17 Identities=18% Similarity=0.300 Sum_probs=14.1
Q ss_pred HHHHHHHhhCCCCCHHH
Q 030622 4 IEALIKAFSGHGVDEKT 20 (174)
Q Consensus 4 a~~L~~A~kg~gtde~~ 20 (174)
+..||+|++.+|.|...
T Consensus 25 TR~LHdsl~~lg~d~~l 41 (214)
T PRK11166 25 TRMLRDSLRELGLDQAI 41 (214)
T ss_pred HHHHHHHHHHcCCCHHH
Confidence 57899999999988554
No 36
>KOG0031 consensus Myosin regulatory light chain, EF-Hand protein superfamily [Cytoskeleton]
Probab=20.56 E-value=2.3e+02 Score=21.75 Aligned_cols=18 Identities=11% Similarity=0.180 Sum_probs=14.9
Q ss_pred HHhcCCCHHHHHHHHHHh
Q 030622 23 SILGNSQPEHRQAFRKEG 40 (174)
Q Consensus 23 ~Il~~rs~~~l~~i~~~Y 40 (174)
.+++..+..|+++.+++|
T Consensus 21 nvFamf~q~QIqEfKEAF 38 (171)
T KOG0031|consen 21 NVFAMFDQSQIQEFKEAF 38 (171)
T ss_pred hHHHHhhHHHHHHHHHHH
Confidence 456666889999999999
No 37
>PF09958 DUF2192: Uncharacterized protein conserved in archaea (DUF2192); InterPro: IPR018693 This family of various hypothetical archaeal proteins has no known function.
Probab=20.23 E-value=4.7e+02 Score=21.16 Aligned_cols=42 Identities=12% Similarity=0.250 Sum_probs=28.7
Q ss_pred HHHHHHhhCCCCCHHHHHHHhc------------CCCHHHH--HHHHHHh--cccccc
Q 030622 5 EALIKAFSGHGVDEKTVISILG------------NSQPEHR--QAFRKEG--GFFAED 46 (174)
Q Consensus 5 ~~L~~A~kg~gtde~~li~Il~------------~rs~~~l--~~i~~~Y--~~y~~~ 46 (174)
..+-+.+++-+++.+.++++|- +.+|+.+ .++...| .+||-.
T Consensus 15 ~l~~~il~~~~~~R~~lv~~L~~~Y~~~gIeP~RG~s~~diYDKElatlYVVGkyGlG 72 (231)
T PF09958_consen 15 DLWSRILRGEVLDREELVELLREVYEENGIEPFRGLSPPDIYDKELATLYVVGKYGLG 72 (231)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHcCCCcCCCCCccchhhhhHhheeeeeccccc
Confidence 4556777887788888888874 2345555 4677777 777754
Done!