Query 030624
Match_columns 174
No_of_seqs 124 out of 1404
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 16:34:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030624.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030624hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04548 AIG1: AIG1 family; I 100.0 1.7E-27 3.7E-32 170.9 11.8 148 21-172 1-148 (212)
2 cd01852 AIG1 AIG1 (avrRpt2-ind 99.9 2.7E-26 5.8E-31 163.0 15.7 141 21-165 1-141 (196)
3 TIGR00991 3a0901s02IAP34 GTP-b 99.9 9.9E-23 2.1E-27 151.1 14.5 147 19-172 37-186 (313)
4 COG1159 Era GTPase [General fu 99.9 1E-21 2.2E-26 143.2 15.2 126 19-154 5-130 (298)
5 COG1160 Predicted GTPases [Gen 99.9 2.5E-21 5.3E-26 148.3 14.6 133 21-163 4-136 (444)
6 TIGR00993 3a0901s04IAP86 chlor 99.9 5.7E-21 1.2E-25 152.4 16.0 148 21-172 119-274 (763)
7 cd01853 Toc34_like Toc34-like 99.8 9.3E-20 2E-24 133.2 16.0 135 19-156 30-167 (249)
8 PF01926 MMR_HSR1: 50S ribosom 99.8 2.4E-19 5.2E-24 117.0 13.5 116 22-147 1-116 (116)
9 TIGR00436 era GTP-binding prot 99.8 1E-18 2.2E-23 129.8 15.1 121 22-153 2-122 (270)
10 PF02421 FeoB_N: Ferrous iron 99.8 1.8E-19 3.9E-24 122.2 9.2 123 21-157 1-124 (156)
11 PRK00089 era GTPase Era; Revie 99.8 2.5E-18 5.4E-23 129.1 15.5 123 20-152 5-127 (292)
12 COG0218 Predicted GTPase [Gene 99.8 4.4E-18 9.6E-23 118.1 15.1 128 16-153 20-150 (200)
13 PRK15494 era GTPase Era; Provi 99.8 7.6E-18 1.7E-22 128.6 16.8 133 21-163 53-185 (339)
14 COG1160 Predicted GTPases [Gen 99.8 8E-19 1.7E-23 134.6 11.1 139 19-164 177-315 (444)
15 cd01894 EngA1 EngA1 subfamily. 99.8 6.6E-18 1.4E-22 115.2 12.4 121 24-154 1-121 (157)
16 TIGR03594 GTPase_EngA ribosome 99.8 1.4E-17 3.1E-22 131.2 16.0 122 22-153 1-122 (429)
17 cd01895 EngA2 EngA2 subfamily. 99.8 2E-17 4.4E-22 114.4 15.0 127 20-153 2-128 (174)
18 PRK12298 obgE GTPase CgtA; Rev 99.8 2.4E-17 5.2E-22 127.6 16.6 125 22-153 161-290 (390)
19 PRK12299 obgE GTPase CgtA; Rev 99.8 4.2E-17 9.1E-22 124.0 17.5 126 22-153 160-286 (335)
20 cd04163 Era Era subfamily. Er 99.8 2.4E-17 5.3E-22 113.1 14.6 123 20-152 3-125 (168)
21 TIGR03598 GTPase_YsxC ribosome 99.8 4.9E-17 1.1E-21 113.8 16.3 127 17-153 15-144 (179)
22 COG1084 Predicted GTPase [Gene 99.8 2.2E-17 4.7E-22 121.8 13.9 126 21-153 169-295 (346)
23 cd01898 Obg Obg subfamily. Th 99.8 2.6E-17 5.7E-22 113.9 13.5 125 22-153 2-129 (170)
24 PRK03003 GTP-binding protein D 99.8 6E-17 1.3E-21 128.8 16.9 124 20-153 38-161 (472)
25 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 3.5E-17 7.5E-22 113.0 13.5 115 22-154 2-118 (168)
26 cd04171 SelB SelB subfamily. 99.8 3.5E-17 7.6E-22 112.4 13.4 117 22-153 2-119 (164)
27 PRK00093 GTP-binding protein D 99.8 5.5E-17 1.2E-21 128.1 16.2 122 21-152 2-123 (435)
28 cd04164 trmE TrmE (MnmE, ThdF, 99.8 8.2E-17 1.8E-21 109.7 14.9 122 21-154 2-123 (157)
29 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.1E-17 2.4E-22 118.4 10.2 118 20-153 2-133 (195)
30 PRK00093 GTP-binding protein D 99.8 9.1E-17 2E-21 126.8 16.5 128 19-153 172-299 (435)
31 PF00009 GTP_EFTU: Elongation 99.7 1.5E-17 3.2E-22 117.3 10.4 116 20-152 3-136 (188)
32 COG0486 ThdF Predicted GTPase 99.7 3.6E-17 7.8E-22 125.9 13.1 122 21-153 218-339 (454)
33 cd01878 HflX HflX subfamily. 99.7 9.2E-17 2E-21 114.6 14.3 126 21-153 42-168 (204)
34 PRK12297 obgE GTPase CgtA; Rev 99.7 1.8E-16 3.9E-21 123.6 17.0 135 22-163 160-298 (424)
35 TIGR03594 GTPase_EngA ribosome 99.7 1.3E-16 2.8E-21 125.8 16.4 125 20-151 172-296 (429)
36 cd04119 RJL RJL (RabJ-Like) su 99.7 7.8E-17 1.7E-21 111.0 12.5 118 22-152 2-124 (168)
37 cd01864 Rab19 Rab19 subfamily. 99.7 7.7E-17 1.7E-21 111.2 12.3 119 20-154 3-124 (165)
38 TIGR02729 Obg_CgtA Obg family 99.7 2.3E-16 4.9E-21 119.9 15.6 127 21-153 158-288 (329)
39 cd01891 TypA_BipA TypA (tyrosi 99.7 1.1E-16 2.5E-21 113.4 13.2 116 21-153 3-132 (194)
40 cd01886 EF-G Elongation factor 99.7 1.1E-16 2.3E-21 118.7 13.2 116 22-154 1-132 (270)
41 cd01865 Rab3 Rab3 subfamily. 99.7 1.2E-16 2.6E-21 110.3 12.7 118 21-153 2-121 (165)
42 TIGR03156 GTP_HflX GTP-binding 99.7 1.7E-16 3.7E-21 121.5 14.7 126 21-153 190-316 (351)
43 PRK09518 bifunctional cytidyla 99.7 3.3E-16 7.1E-21 130.0 17.1 124 20-153 275-398 (712)
44 cd04160 Arfrp1 Arfrp1 subfamil 99.7 1.6E-16 3.6E-21 109.6 12.8 119 22-153 1-122 (167)
45 cd01867 Rab8_Rab10_Rab13_like 99.7 1.6E-16 3.4E-21 110.0 12.6 117 21-153 4-123 (167)
46 cd01897 NOG NOG1 is a nucleola 99.7 2.6E-16 5.7E-21 108.7 13.7 124 21-153 1-128 (168)
47 cd00881 GTP_translation_factor 99.7 1.5E-16 3.3E-21 111.7 12.7 115 22-153 1-129 (189)
48 COG3596 Predicted GTPase [Gene 99.7 1.7E-17 3.6E-22 119.9 7.7 126 19-153 38-163 (296)
49 cd04122 Rab14 Rab14 subfamily. 99.7 1.9E-16 4.1E-21 109.4 12.7 116 21-153 3-122 (166)
50 cd01861 Rab6 Rab6 subfamily. 99.7 1.9E-16 4.1E-21 108.7 12.6 116 22-153 2-120 (161)
51 cd01866 Rab2 Rab2 subfamily. 99.7 2.1E-16 4.4E-21 109.5 12.7 118 21-153 5-124 (168)
52 TIGR00450 mnmE_trmE_thdF tRNA 99.7 3.5E-16 7.5E-21 123.0 15.5 122 21-153 204-325 (442)
53 cd04113 Rab4 Rab4 subfamily. 99.7 1.5E-16 3.2E-21 109.3 11.9 117 22-153 2-120 (161)
54 PRK12296 obgE GTPase CgtA; Rev 99.7 3.8E-16 8.3E-21 123.3 15.7 126 21-153 160-299 (500)
55 cd01868 Rab11_like Rab11-like. 99.7 2.1E-16 4.5E-21 109.0 12.4 117 21-153 4-123 (165)
56 cd04166 CysN_ATPS CysN_ATPS su 99.7 1.7E-16 3.6E-21 113.7 12.2 116 22-153 1-145 (208)
57 cd00154 Rab Rab family. Rab G 99.7 1.9E-16 4E-21 107.8 11.8 113 22-151 2-118 (159)
58 cd04124 RabL2 RabL2 subfamily. 99.7 1.6E-16 3.4E-21 109.4 11.3 115 22-152 2-118 (161)
59 PRK00454 engB GTP-binding prot 99.7 1.9E-15 4.1E-20 107.0 16.9 125 19-153 23-150 (196)
60 PRK03003 GTP-binding protein D 99.7 4.4E-16 9.6E-21 123.9 15.1 126 19-153 210-337 (472)
61 cd04149 Arf6 Arf6 subfamily. 99.7 5.2E-16 1.1E-20 107.6 13.6 114 20-152 9-124 (168)
62 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.7 3.6E-16 7.9E-21 107.9 12.7 118 21-153 3-122 (166)
63 cd04154 Arl2 Arl2 subfamily. 99.7 4.1E-16 8.9E-21 108.5 13.0 117 19-153 13-130 (173)
64 cd04157 Arl6 Arl6 subfamily. 99.7 5.1E-16 1.1E-20 106.5 13.2 117 22-153 1-119 (162)
65 cd01850 CDC_Septin CDC/Septin. 99.7 8E-16 1.7E-20 114.4 15.0 129 19-153 3-158 (276)
66 cd01860 Rab5_related Rab5-rela 99.7 4.1E-16 8.9E-21 107.2 12.5 117 21-152 2-120 (163)
67 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.7 7.6E-16 1.7E-20 107.3 13.9 116 20-153 15-131 (174)
68 cd04150 Arf1_5_like Arf1-Arf5- 99.7 8.4E-16 1.8E-20 105.6 13.9 113 22-153 2-116 (159)
69 PRK11058 GTPase HflX; Provisio 99.7 7.6E-16 1.7E-20 120.5 15.2 126 21-153 198-324 (426)
70 cd04161 Arl2l1_Arl13_like Arl2 99.7 8E-16 1.7E-20 106.5 13.7 114 22-153 1-115 (167)
71 cd04140 ARHI_like ARHI subfami 99.7 4.9E-16 1.1E-20 107.2 12.5 119 21-152 2-122 (165)
72 smart00175 RAB Rab subfamily o 99.7 3.8E-16 8.3E-21 107.3 11.9 117 21-153 1-120 (164)
73 cd04158 ARD1 ARD1 subfamily. 99.7 7.4E-16 1.6E-20 106.9 13.2 114 22-153 1-115 (169)
74 cd04168 TetM_like Tet(M)-like 99.7 5.4E-16 1.2E-20 113.0 13.1 116 22-154 1-132 (237)
75 smart00177 ARF ARF-like small 99.7 1.3E-15 2.7E-20 106.3 14.2 116 20-153 13-129 (175)
76 cd04155 Arl3 Arl3 subfamily. 99.7 1.2E-15 2.7E-20 105.9 14.1 117 19-153 13-130 (173)
77 cd04151 Arl1 Arl1 subfamily. 99.7 6E-16 1.3E-20 106.1 12.0 113 22-153 1-115 (158)
78 cd04104 p47_IIGP_like p47 (47- 99.7 7.1E-16 1.5E-20 109.6 12.7 120 21-153 2-122 (197)
79 cd01881 Obg_like The Obg-like 99.7 5.4E-16 1.2E-20 107.7 11.8 122 25-153 1-135 (176)
80 smart00178 SAR Sar1p-like memb 99.7 9.2E-16 2E-20 107.9 13.1 118 18-153 15-133 (184)
81 cd04156 ARLTS1 ARLTS1 subfamil 99.7 1.2E-15 2.7E-20 104.5 13.3 114 22-152 1-115 (160)
82 cd04115 Rab33B_Rab33A Rab33B/R 99.7 7.2E-16 1.6E-20 107.0 12.2 119 21-153 3-124 (170)
83 cd04123 Rab21 Rab21 subfamily. 99.7 8E-16 1.7E-20 105.4 12.3 117 22-153 2-120 (162)
84 cd04107 Rab32_Rab38 Rab38/Rab3 99.7 1.1E-15 2.4E-20 108.9 13.3 115 22-151 2-123 (201)
85 cd04145 M_R_Ras_like M-Ras/R-R 99.7 1.3E-15 2.9E-20 104.7 13.2 117 20-153 2-122 (164)
86 cd01890 LepA LepA subfamily. 99.7 8.1E-16 1.8E-20 107.4 12.2 117 21-153 1-134 (179)
87 cd04169 RF3 RF3 subfamily. Pe 99.7 1.4E-15 3.1E-20 112.5 14.1 117 21-154 3-139 (267)
88 cd01863 Rab18 Rab18 subfamily. 99.7 8.1E-16 1.8E-20 105.5 12.0 118 22-153 2-121 (161)
89 cd04106 Rab23_lke Rab23-like s 99.7 9.5E-16 2.1E-20 105.2 12.1 116 22-153 2-121 (162)
90 cd01888 eIF2_gamma eIF2-gamma 99.7 5.5E-16 1.2E-20 110.6 11.3 117 22-153 2-152 (203)
91 cd04120 Rab12 Rab12 subfamily. 99.7 1.1E-15 2.3E-20 108.9 12.6 116 22-153 2-120 (202)
92 cd04136 Rap_like Rap-like subf 99.7 1E-15 2.2E-20 105.2 12.2 116 21-153 2-121 (163)
93 cd04109 Rab28 Rab28 subfamily. 99.7 1.1E-15 2.4E-20 110.0 12.8 117 22-153 2-124 (215)
94 cd00878 Arf_Arl Arf (ADP-ribos 99.7 1.2E-15 2.6E-20 104.4 12.4 114 22-153 1-115 (158)
95 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 2.1E-15 4.5E-20 104.2 13.7 112 23-153 2-114 (164)
96 cd01879 FeoB Ferrous iron tran 99.7 9.5E-16 2.1E-20 104.7 11.7 116 25-153 1-116 (158)
97 cd04159 Arl10_like Arl10-like 99.7 1.7E-15 3.8E-20 103.1 13.0 114 23-153 2-116 (159)
98 cd04125 RabA_like RabA-like su 99.7 1.1E-15 2.4E-20 107.7 12.4 118 21-153 1-120 (188)
99 cd04112 Rab26 Rab26 subfamily. 99.7 1.2E-15 2.7E-20 107.8 12.6 118 21-152 1-120 (191)
100 PRK09518 bifunctional cytidyla 99.7 2.9E-15 6.2E-20 124.4 16.6 125 20-153 450-576 (712)
101 PTZ00133 ADP-ribosylation fact 99.7 2.8E-15 6E-20 105.3 14.1 115 20-153 17-133 (182)
102 KOG1423 Ras-like GTPase ERA [C 99.7 7.7E-16 1.7E-20 112.7 11.5 131 18-154 70-201 (379)
103 cd00880 Era_like Era (E. coli 99.7 4.1E-15 8.9E-20 101.0 14.6 119 25-153 1-119 (163)
104 CHL00071 tufA elongation facto 99.7 4E-16 8.6E-21 122.1 10.7 119 18-153 10-143 (409)
105 PRK05291 trmE tRNA modificatio 99.7 1.7E-15 3.6E-20 119.7 14.3 121 21-153 216-336 (449)
106 cd04127 Rab27A Rab27a subfamil 99.7 1.7E-15 3.7E-20 105.8 12.8 119 21-153 5-135 (180)
107 TIGR00487 IF-2 translation ini 99.7 2.6E-15 5.7E-20 121.5 15.5 126 19-162 86-211 (587)
108 cd00879 Sar1 Sar1 subfamily. 99.7 2.2E-15 4.7E-20 106.3 13.3 126 20-163 19-146 (190)
109 cd04110 Rab35 Rab35 subfamily. 99.7 2.1E-15 4.5E-20 107.3 13.2 118 20-153 6-125 (199)
110 PRK04213 GTP-binding protein; 99.7 6.3E-15 1.4E-19 104.9 15.6 125 17-153 6-145 (201)
111 cd01889 SelB_euk SelB subfamil 99.7 1.2E-15 2.7E-20 107.9 11.9 116 22-153 2-135 (192)
112 cd04142 RRP22 RRP22 subfamily. 99.7 2.4E-15 5.2E-20 106.9 13.2 126 22-153 2-131 (198)
113 PLN00223 ADP-ribosylation fact 99.7 4E-15 8.6E-20 104.4 14.0 115 20-153 17-133 (181)
114 cd01893 Miro1 Miro1 subfamily. 99.7 1.5E-15 3.4E-20 104.9 11.7 114 22-153 2-118 (166)
115 KOG0084 GTPase Rab1/YPT1, smal 99.7 1.3E-15 2.9E-20 104.7 10.9 120 21-155 10-131 (205)
116 cd04108 Rab36_Rab34 Rab34/Rab3 99.7 1.5E-15 3.2E-20 105.5 11.4 116 22-153 2-121 (170)
117 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.7 2.4E-15 5.1E-20 105.7 12.5 118 20-152 3-123 (183)
118 cd04114 Rab30 Rab30 subfamily. 99.7 1.9E-15 4E-20 104.5 11.8 118 20-153 7-127 (169)
119 cd04117 Rab15 Rab15 subfamily. 99.7 2.8E-15 6E-20 103.2 12.5 114 22-153 2-120 (161)
120 PLN03071 GTP-binding nuclear p 99.7 2.5E-15 5.3E-20 108.5 12.4 117 18-152 11-131 (219)
121 cd04170 EF-G_bact Elongation f 99.7 2.1E-15 4.4E-20 112.0 12.3 116 22-154 1-132 (268)
122 cd00877 Ran Ran (Ras-related n 99.7 1.4E-15 3.1E-20 105.2 10.6 114 22-153 2-119 (166)
123 cd01862 Rab7 Rab7 subfamily. 99.7 3.5E-15 7.5E-20 103.4 12.6 117 22-152 2-123 (172)
124 cd04138 H_N_K_Ras_like H-Ras/N 99.7 3.3E-15 7.2E-20 102.3 12.4 116 21-153 2-121 (162)
125 smart00173 RAS Ras subfamily o 99.7 3E-15 6.6E-20 103.0 12.2 116 22-153 2-120 (164)
126 PLN03110 Rab GTPase; Provision 99.7 3.2E-15 7E-20 107.6 12.8 117 20-153 12-132 (216)
127 smart00053 DYNc Dynamin, GTPas 99.7 1.6E-14 3.4E-19 104.9 16.2 138 21-164 27-217 (240)
128 cd04101 RabL4 RabL4 (Rab-like4 99.7 2.2E-15 4.7E-20 103.7 11.3 115 22-153 2-122 (164)
129 cd04111 Rab39 Rab39 subfamily. 99.7 4E-15 8.8E-20 106.8 13.0 118 20-153 2-124 (211)
130 KOG1489 Predicted GTP-binding 99.7 2.4E-15 5.1E-20 110.6 11.8 145 11-164 189-338 (366)
131 PF08477 Miro: Miro-like prote 99.7 3.4E-16 7.5E-21 102.3 6.7 116 22-149 1-119 (119)
132 PRK05306 infB translation init 99.7 4.5E-15 9.7E-20 123.1 14.7 117 18-153 288-404 (787)
133 cd04121 Rab40 Rab40 subfamily. 99.6 4.7E-15 1E-19 104.6 12.5 115 21-152 7-124 (189)
134 PLN03108 Rab family protein; P 99.6 5.1E-15 1.1E-19 106.2 12.9 117 21-153 7-126 (210)
135 PLN03118 Rab family protein; P 99.6 9.5E-15 2.1E-19 104.8 14.3 119 20-153 14-135 (211)
136 cd04176 Rap2 Rap2 subgroup. T 99.6 3.9E-15 8.3E-20 102.4 11.7 116 21-153 2-121 (163)
137 PTZ00369 Ras-like protein; Pro 99.6 5.7E-15 1.2E-19 104.2 12.7 119 20-153 5-125 (189)
138 cd01876 YihA_EngB The YihA (En 99.6 1.9E-14 4.1E-19 98.9 15.1 121 23-153 2-125 (170)
139 cd04175 Rap1 Rap1 subgroup. T 99.6 4.2E-15 9.1E-20 102.4 11.5 117 21-153 2-121 (164)
140 cd04144 Ras2 Ras2 subfamily. 99.6 4.5E-15 9.7E-20 104.8 11.9 116 22-153 1-121 (190)
141 cd04105 SR_beta Signal recogni 99.6 2E-15 4.3E-20 107.7 10.1 115 22-153 2-124 (203)
142 cd04118 Rab24 Rab24 subfamily. 99.6 4.2E-15 9.2E-20 105.1 11.6 113 22-152 2-119 (193)
143 cd04132 Rho4_like Rho4-like su 99.6 8.7E-15 1.9E-19 102.9 13.0 115 21-153 1-120 (187)
144 PLN03127 Elongation factor Tu; 99.6 5.8E-15 1.3E-19 116.3 13.3 118 19-153 60-192 (447)
145 cd04126 Rab20 Rab20 subfamily. 99.6 1.2E-14 2.5E-19 104.8 13.6 112 22-152 2-114 (220)
146 cd01885 EF2 EF2 (for archaea a 99.6 3.4E-15 7.4E-20 107.5 10.7 115 21-151 1-138 (222)
147 PRK09554 feoB ferrous iron tra 99.6 1E-14 2.2E-19 121.2 15.0 123 20-153 3-127 (772)
148 CHL00189 infB translation init 99.6 5.7E-15 1.2E-19 121.5 13.1 118 19-154 243-363 (742)
149 cd04116 Rab9 Rab9 subfamily. 99.6 8.2E-15 1.8E-19 101.5 12.0 120 20-152 5-128 (170)
150 TIGR00475 selB selenocysteine- 99.6 9.5E-15 2.1E-19 118.6 13.9 116 22-153 2-118 (581)
151 TIGR01394 TypA_BipA GTP-bindin 99.6 9.7E-15 2.1E-19 118.5 13.8 116 21-153 2-131 (594)
152 PRK12735 elongation factor Tu; 99.6 7.2E-15 1.6E-19 114.6 12.7 118 19-153 11-143 (396)
153 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.6 2E-14 4.3E-19 100.0 13.6 116 21-153 3-122 (172)
154 PRK12736 elongation factor Tu; 99.6 2.5E-15 5.5E-20 117.1 10.1 118 19-153 11-143 (394)
155 cd04177 RSR1 RSR1 subgroup. R 99.6 1.1E-14 2.4E-19 100.7 12.3 117 21-153 2-121 (168)
156 PRK12317 elongation factor 1-a 99.6 1E-14 2.3E-19 114.8 13.6 119 19-153 5-154 (425)
157 cd00157 Rho Rho (Ras homology) 99.6 6.3E-15 1.4E-19 102.0 10.9 117 21-154 1-120 (171)
158 cd00876 Ras Ras family. The R 99.6 8.9E-15 1.9E-19 100.0 11.5 116 22-153 1-119 (160)
159 PF00735 Septin: Septin; Inte 99.6 1.6E-14 3.5E-19 107.4 13.6 128 20-153 4-157 (281)
160 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.6 1E-14 2.2E-19 102.4 11.8 116 19-152 4-123 (182)
161 cd04131 Rnd Rnd subfamily. Th 99.6 7.5E-15 1.6E-19 102.7 11.1 114 21-152 2-119 (178)
162 cd04102 RabL3 RabL3 (Rab-like3 99.6 1.5E-14 3.1E-19 103.0 12.6 117 22-153 2-144 (202)
163 cd04128 Spg1 Spg1p. Spg1p (se 99.6 1E-14 2.2E-19 102.4 11.5 111 22-151 2-117 (182)
164 COG0536 Obg Predicted GTPase [ 99.6 2.4E-14 5.2E-19 106.4 13.8 145 2-153 119-290 (369)
165 cd04134 Rho3 Rho3 subfamily. 99.6 7.5E-15 1.6E-19 103.6 10.8 115 21-153 1-119 (189)
166 PRK12739 elongation factor G; 99.6 9.9E-15 2.1E-19 120.9 13.1 120 18-154 6-141 (691)
167 KOG0094 GTPase Rab6/YPT6/Ryh1, 99.6 1.1E-14 2.5E-19 100.0 11.1 125 20-160 22-150 (221)
168 TIGR00484 EF-G translation elo 99.6 1.4E-14 3.1E-19 119.9 13.9 121 17-154 7-143 (689)
169 cd01896 DRG The developmentall 99.6 4.8E-14 1E-18 102.6 15.1 88 22-116 2-89 (233)
170 PRK00049 elongation factor Tu; 99.6 1.2E-14 2.6E-19 113.3 12.7 118 18-152 10-142 (396)
171 cd04146 RERG_RasL11_like RERG/ 99.6 6.2E-15 1.3E-19 101.7 10.0 118 22-153 1-121 (165)
172 cd04139 RalA_RalB RalA/RalB su 99.6 1.8E-14 4E-19 98.8 12.3 116 22-152 2-119 (164)
173 PRK00007 elongation factor G; 99.6 1.4E-14 3E-19 120.0 13.7 121 17-154 7-143 (693)
174 PF00025 Arf: ADP-ribosylation 99.6 1.3E-14 2.8E-19 101.2 11.2 117 18-153 12-130 (175)
175 cd04137 RheB Rheb (Ras Homolog 99.6 1.5E-14 3.3E-19 101.1 11.6 117 21-153 2-121 (180)
176 PRK15467 ethanolamine utilizat 99.6 7.1E-15 1.5E-19 100.9 9.6 116 21-164 2-117 (158)
177 cd04167 Snu114p Snu114p subfam 99.6 1.1E-14 2.4E-19 104.6 11.0 115 21-151 1-136 (213)
178 PRK10512 selenocysteinyl-tRNA- 99.6 2.1E-14 4.6E-19 117.0 13.8 117 22-153 2-119 (614)
179 TIGR00485 EF-Tu translation el 99.6 7E-15 1.5E-19 114.7 10.6 120 18-153 10-143 (394)
180 KOG1191 Mitochondrial GTPase [ 99.6 9.7E-15 2.1E-19 112.8 11.1 129 21-153 269-404 (531)
181 smart00174 RHO Rho (Ras homolo 99.6 1.5E-14 3.2E-19 100.5 11.0 112 23-153 1-117 (174)
182 TIGR00503 prfC peptide chain r 99.6 2.5E-14 5.3E-19 114.8 13.6 124 18-158 9-152 (527)
183 cd04147 Ras_dva Ras-dva subfam 99.6 1.5E-14 3.2E-19 102.9 11.1 114 22-152 1-118 (198)
184 KOG0092 GTPase Rab5/YPT51 and 99.6 7.3E-15 1.6E-19 100.7 9.0 125 20-158 5-130 (200)
185 PF10662 PduV-EutP: Ethanolami 99.6 4.9E-15 1.1E-19 98.6 8.0 114 21-164 2-117 (143)
186 PLN03126 Elongation factor Tu; 99.6 8.3E-15 1.8E-19 116.1 10.7 120 18-153 79-212 (478)
187 cd01874 Cdc42 Cdc42 subfamily. 99.6 1.7E-14 3.6E-19 100.7 11.0 114 21-153 2-120 (175)
188 cd01892 Miro2 Miro2 subfamily. 99.6 3E-14 6.5E-19 98.8 12.2 117 21-153 5-123 (169)
189 cd04148 RGK RGK subfamily. Th 99.6 2.7E-14 5.8E-19 103.2 12.3 116 22-153 2-121 (221)
190 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.6 2.9E-14 6.2E-19 103.4 12.3 115 20-152 13-131 (232)
191 TIGR02528 EutP ethanolamine ut 99.6 8.2E-15 1.8E-19 98.6 8.8 101 22-152 2-102 (142)
192 PRK10218 GTP-binding protein; 99.6 4.4E-14 9.6E-19 114.7 14.5 117 20-153 5-135 (607)
193 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.6 3.1E-14 6.7E-19 102.7 11.9 115 21-153 2-120 (222)
194 cd01875 RhoG RhoG subfamily. 99.6 3.1E-14 6.8E-19 100.6 11.5 116 20-153 3-122 (191)
195 TIGR00231 small_GTP small GTP- 99.6 1.1E-13 2.3E-18 93.8 13.6 117 21-153 2-123 (161)
196 PLN00023 GTP-binding protein; 99.6 5.9E-14 1.3E-18 105.2 13.2 127 14-153 15-166 (334)
197 cd04143 Rhes_like Rhes_like su 99.6 4.9E-14 1.1E-18 103.4 12.6 115 22-152 2-127 (247)
198 cd04133 Rop_like Rop subfamily 99.6 3.3E-14 7.3E-19 99.2 11.1 115 21-152 2-119 (176)
199 PRK00741 prfC peptide chain re 99.6 5E-14 1.1E-18 113.0 13.6 120 18-154 8-147 (526)
200 cd01871 Rac1_like Rac1-like su 99.6 6.6E-14 1.4E-18 97.6 12.6 115 21-152 2-119 (174)
201 COG2229 Predicted GTPase [Gene 99.6 1.3E-13 2.8E-18 94.1 13.4 130 20-164 10-148 (187)
202 cd04135 Tc10 TC10 subfamily. 99.6 7.2E-14 1.6E-18 97.0 12.6 113 22-153 2-119 (174)
203 COG2262 HflX GTPases [General 99.6 7.4E-14 1.6E-18 106.2 13.4 129 19-154 191-320 (411)
204 TIGR02034 CysN sulfate adenyly 99.6 2.5E-14 5.5E-19 111.8 11.3 118 21-154 1-149 (406)
205 TIGR00491 aIF-2 translation in 99.6 4.4E-14 9.5E-19 114.4 12.9 115 20-152 4-135 (590)
206 cd01883 EF1_alpha Eukaryotic e 99.6 3E-14 6.5E-19 102.8 10.7 115 22-152 1-151 (219)
207 KOG0087 GTPase Rab11/YPT3, sma 99.6 2E-14 4.3E-19 100.0 9.1 118 21-152 15-133 (222)
208 cd04130 Wrch_1 Wrch-1 subfamil 99.6 3E-14 6.5E-19 99.1 10.2 113 22-152 2-118 (173)
209 COG0370 FeoB Fe2+ transport sy 99.6 4.3E-14 9.3E-19 113.4 12.3 124 20-158 3-128 (653)
210 cd01870 RhoA_like RhoA-like su 99.6 7.4E-14 1.6E-18 97.1 11.9 115 21-153 2-120 (175)
211 PRK05124 cysN sulfate adenylyl 99.6 3.9E-14 8.5E-19 112.5 11.5 121 18-154 25-176 (474)
212 cd04165 GTPBP1_like GTPBP1-lik 99.6 1.2E-13 2.5E-18 99.9 12.9 116 22-153 1-153 (224)
213 PF00071 Ras: Ras family; Int 99.6 2.6E-14 5.5E-19 98.2 8.9 117 22-153 1-119 (162)
214 PF00350 Dynamin_N: Dynamin fa 99.6 4.8E-14 1E-18 97.5 10.1 115 23-148 1-168 (168)
215 PRK05506 bifunctional sulfate 99.6 4E-14 8.7E-19 116.3 11.2 121 16-152 20-171 (632)
216 PRK09866 hypothetical protein; 99.5 3.4E-13 7.4E-18 108.3 15.5 85 70-163 230-317 (741)
217 smart00176 RAN Ran (Ras-relate 99.5 6.3E-14 1.4E-18 99.7 10.1 109 26-152 1-113 (200)
218 PRK13351 elongation factor G; 99.5 8.1E-14 1.8E-18 115.6 12.3 119 19-154 7-141 (687)
219 cd00882 Ras_like_GTPase Ras-li 99.5 9.3E-14 2E-18 93.2 10.4 113 25-154 1-118 (157)
220 PF09439 SRPRB: Signal recogni 99.5 5E-15 1.1E-19 102.7 4.1 120 20-154 3-128 (181)
221 PRK04004 translation initiatio 99.5 1.3E-13 2.7E-18 112.0 12.6 115 19-151 5-136 (586)
222 PTZ00141 elongation factor 1- 99.5 1.1E-13 2.3E-18 109.3 11.7 116 19-150 6-157 (446)
223 COG5019 CDC3 Septin family pro 99.5 1.9E-13 4E-18 102.7 12.3 134 15-154 18-178 (373)
224 KOG0078 GTP-binding protein SE 99.5 1.5E-13 3.2E-18 95.8 10.9 122 17-153 9-132 (207)
225 TIGR00483 EF-1_alpha translati 99.5 1.3E-13 2.8E-18 108.6 12.1 118 19-152 6-155 (426)
226 PTZ00132 GTP-binding nuclear p 99.5 2.3E-13 5E-18 97.9 12.4 117 19-153 8-128 (215)
227 TIGR01393 lepA GTP-binding pro 99.5 2.3E-13 4.9E-18 110.8 13.4 118 20-153 3-137 (595)
228 KOG2655 Septin family protein 99.5 3.8E-13 8.2E-18 101.6 13.4 137 12-154 13-174 (366)
229 KOG0098 GTPase Rab2, small G p 99.5 2.7E-13 5.8E-18 92.6 11.1 120 20-154 6-127 (216)
230 KOG0073 GTP-binding ADP-ribosy 99.5 5.5E-13 1.2E-17 89.3 12.0 114 20-152 16-131 (185)
231 KOG0095 GTPase Rab30, small G 99.5 2.6E-13 5.6E-18 89.6 9.8 118 21-153 8-127 (213)
232 PRK04000 translation initiatio 99.5 3.2E-13 6.8E-18 105.8 11.8 124 15-153 4-154 (411)
233 PRK05433 GTP-binding protein L 99.5 4.7E-13 1E-17 109.0 12.8 118 20-153 7-141 (600)
234 cd04129 Rho2 Rho2 subfamily. 99.5 3.6E-13 7.9E-18 94.8 10.5 113 21-152 2-119 (187)
235 KOG0080 GTPase Rab18, small G 99.5 2.9E-13 6.2E-18 90.4 8.9 118 21-151 12-130 (209)
236 TIGR03680 eif2g_arch translati 99.5 3.3E-13 7.2E-18 105.6 10.5 120 19-153 3-149 (406)
237 PTZ00416 elongation factor 2; 99.5 3.1E-13 6.7E-18 113.9 10.9 119 17-151 16-157 (836)
238 COG1100 GTPase SAR1 and relate 99.5 7.5E-13 1.6E-17 95.3 11.3 117 21-154 6-127 (219)
239 cd01882 BMS1 Bms1. Bms1 is an 99.5 2.9E-12 6.3E-17 92.8 13.9 111 18-153 37-148 (225)
240 TIGR00490 aEF-2 translation el 99.5 3E-13 6.6E-18 112.5 9.6 118 18-152 17-152 (720)
241 PF05049 IIGP: Interferon-indu 99.5 4E-13 8.6E-18 102.6 8.8 118 20-150 35-153 (376)
242 PLN00116 translation elongatio 99.4 1.3E-12 2.7E-17 110.4 12.5 120 16-151 15-163 (843)
243 KOG0079 GTP-binding protein H- 99.4 6.3E-13 1.4E-17 87.6 8.0 117 21-153 9-127 (198)
244 cd04103 Centaurin_gamma Centau 99.4 1.7E-12 3.6E-17 89.1 10.5 108 22-151 2-112 (158)
245 TIGR00437 feoB ferrous iron tr 99.4 1.6E-12 3.5E-17 105.8 11.9 114 27-153 1-114 (591)
246 COG1163 DRG Predicted GTPase [ 99.4 9E-13 2E-17 97.5 9.4 96 13-115 56-151 (365)
247 KOG1490 GTP-binding protein CR 99.4 4.3E-13 9.3E-18 104.1 8.0 129 21-154 169-297 (620)
248 KOG1145 Mitochondrial translat 99.4 5.3E-12 1.1E-16 99.0 12.3 118 19-154 152-269 (683)
249 KOG1547 Septin CDC10 and relat 99.4 1.7E-11 3.7E-16 87.4 13.7 132 16-153 42-199 (336)
250 PLN00043 elongation factor 1-a 99.4 3.2E-12 6.9E-17 101.0 11.2 117 19-151 6-158 (447)
251 KOG0093 GTPase Rab3, small G p 99.4 3.9E-12 8.4E-17 83.9 9.5 119 21-153 22-141 (193)
252 COG5256 TEF1 Translation elong 99.4 6.7E-12 1.5E-16 95.7 12.1 130 19-164 6-171 (428)
253 COG0532 InfB Translation initi 99.4 9.6E-12 2.1E-16 97.5 13.2 121 19-157 4-126 (509)
254 PF04670 Gtr1_RagA: Gtr1/RagA 99.4 7E-12 1.5E-16 90.6 11.6 125 22-153 1-126 (232)
255 KOG1954 Endocytosis/signaling 99.4 2.8E-12 6E-17 96.5 8.7 127 21-154 59-227 (532)
256 COG1116 TauB ABC-type nitrate/ 99.4 9.2E-12 2E-16 89.5 10.7 45 4-50 15-59 (248)
257 COG1131 CcmA ABC-type multidru 99.4 3.8E-12 8.1E-17 95.6 9.1 135 5-147 18-195 (293)
258 cd03229 ABC_Class3 This class 99.4 6.7E-12 1.5E-16 87.8 9.8 137 6-148 14-160 (178)
259 PRK12740 elongation factor G; 99.4 1E-11 2.2E-16 103.0 12.3 112 26-154 1-128 (668)
260 PTZ00327 eukaryotic translatio 99.4 6.4E-12 1.4E-16 99.3 10.5 121 18-153 32-186 (460)
261 KOG0090 Signal recognition par 99.4 2.3E-12 4.9E-17 90.1 6.8 119 21-154 39-161 (238)
262 COG1126 GlnQ ABC-type polar am 99.4 2.8E-12 6E-17 90.2 7.2 139 3-147 13-194 (240)
263 KOG0086 GTPase Rab4, small G p 99.4 9.1E-12 2E-16 82.7 9.1 125 21-159 10-135 (214)
264 TIGR02836 spore_IV_A stage IV 99.4 1.4E-11 3.1E-16 94.6 11.5 130 17-151 14-193 (492)
265 PRK07560 elongation factor EF- 99.3 5.2E-12 1.1E-16 105.4 9.6 120 17-152 17-153 (731)
266 cd01873 RhoBTB RhoBTB subfamil 99.3 2.4E-11 5.2E-16 86.2 11.3 116 21-152 3-134 (195)
267 PTZ00258 GTP-binding protein; 99.3 1.8E-11 4E-16 94.5 11.2 90 19-114 20-125 (390)
268 cd01900 YchF YchF subfamily. 99.3 1.5E-11 3.3E-16 91.0 10.2 86 23-114 1-102 (274)
269 COG1120 FepC ABC-type cobalami 99.3 6.7E-12 1.4E-16 91.5 8.0 45 3-49 13-57 (258)
270 KOG0394 Ras-related GTPase [Ge 99.3 6.8E-12 1.5E-16 85.7 7.4 121 20-152 9-132 (210)
271 COG0480 FusA Translation elong 99.3 2.7E-11 5.7E-16 99.6 12.0 120 19-155 9-145 (697)
272 KOG0074 GTP-binding ADP-ribosy 99.3 2E-11 4.3E-16 80.1 9.0 131 13-163 10-142 (185)
273 cd03230 ABC_DR_subfamily_A Thi 99.3 4.3E-11 9.3E-16 83.3 10.9 135 6-148 14-154 (173)
274 COG1121 ZnuC ABC-type Mn/Zn tr 99.3 4.7E-11 1E-15 86.8 11.3 43 6-50 18-60 (254)
275 PRK09601 GTP-binding protein Y 99.3 4E-11 8.6E-16 91.7 11.3 88 21-114 3-106 (364)
276 COG1136 SalX ABC-type antimicr 99.3 1.1E-11 2.4E-16 88.7 7.5 140 6-150 19-204 (226)
277 COG4917 EutP Ethanolamine util 99.3 7.5E-12 1.6E-16 80.4 4.6 115 21-164 2-117 (148)
278 cd03259 ABC_Carb_Solutes_like 99.3 9.3E-11 2E-15 84.3 10.9 43 5-49 13-55 (213)
279 KOG0070 GTP-binding ADP-ribosy 99.3 8.4E-11 1.8E-15 80.5 9.7 119 16-153 13-133 (181)
280 COG5192 BMS1 GTP-binding prote 99.3 3.1E-11 6.8E-16 95.4 8.6 129 20-174 69-198 (1077)
281 KOG0075 GTP-binding ADP-ribosy 99.3 4.4E-11 9.5E-16 78.9 7.9 124 21-164 21-146 (186)
282 KOG0091 GTPase Rab39, small G 99.2 3.1E-11 6.7E-16 81.0 7.3 123 21-158 9-136 (213)
283 KOG0462 Elongation factor-type 99.2 8.7E-11 1.9E-15 92.3 10.8 131 16-162 56-201 (650)
284 PRK13536 nodulation factor exp 99.2 6.8E-11 1.5E-15 90.6 10.1 43 5-49 54-96 (340)
285 cd03216 ABC_Carb_Monos_I This 99.2 6.3E-11 1.4E-15 81.7 8.9 127 6-148 14-141 (163)
286 cd03218 ABC_YhbG The ABC trans 99.2 8.7E-11 1.9E-15 85.5 10.1 42 6-49 14-55 (232)
287 cd03246 ABCC_Protease_Secretio 99.2 7.5E-11 1.6E-15 82.1 9.3 135 6-148 16-155 (173)
288 KOG0071 GTP-binding ADP-ribosy 99.2 6.1E-10 1.3E-14 73.0 12.6 129 19-166 16-147 (180)
289 TIGR01188 drrA daunorubicin re 99.2 4.4E-11 9.5E-16 90.4 8.5 44 4-49 5-48 (302)
290 cd03301 ABC_MalK_N The N-termi 99.2 2E-10 4.3E-15 82.5 11.3 43 5-49 13-55 (213)
291 COG1125 OpuBA ABC-type proline 99.2 2.4E-11 5.3E-16 87.5 6.3 80 3-85 12-91 (309)
292 COG1217 TypA Predicted membran 99.2 1.4E-10 3E-15 89.7 10.9 120 20-156 5-138 (603)
293 PRK13537 nodulation ABC transp 99.2 9.2E-11 2E-15 88.7 9.8 43 5-49 20-62 (306)
294 cd03231 ABC_CcmA_heme_exporter 99.2 2.2E-10 4.8E-15 81.6 11.2 43 5-49 13-55 (201)
295 COG3839 MalK ABC-type sugar tr 99.2 7.9E-11 1.7E-15 89.1 9.2 72 7-83 18-89 (338)
296 cd03215 ABC_Carb_Monos_II This 99.2 8.5E-11 1.8E-15 82.5 8.8 136 7-148 15-163 (182)
297 COG1135 AbcC ABC-type metal io 99.2 6E-11 1.3E-15 87.6 8.2 136 7-147 21-200 (339)
298 cd03261 ABC_Org_Solvent_Resist 99.2 1E-10 2.2E-15 85.3 9.5 42 6-49 14-55 (235)
299 cd03255 ABC_MJ0796_Lo1CDE_FtsE 99.2 1.3E-10 2.9E-15 83.7 10.0 43 5-49 17-59 (218)
300 cd03293 ABC_NrtD_SsuB_transpor 99.2 2.2E-10 4.7E-15 82.8 11.1 42 6-49 18-59 (220)
301 PRK11247 ssuB aliphatic sulfon 99.2 2.2E-10 4.9E-15 84.6 11.3 43 5-49 25-67 (257)
302 cd03228 ABCC_MRP_Like The MRP 99.2 7.7E-11 1.7E-15 81.9 8.4 134 6-148 16-154 (171)
303 PRK13538 cytochrome c biogenes 99.2 1.8E-10 3.8E-15 82.3 10.4 44 5-50 14-57 (204)
304 TIGR02673 FtsE cell division A 99.2 1.4E-10 3.1E-15 83.3 9.9 43 5-49 15-57 (214)
305 cd03294 ABC_Pro_Gly_Bertaine T 99.2 2.3E-10 5E-15 85.1 11.0 43 5-49 37-79 (269)
306 cd03265 ABC_DrrA DrrA is the A 99.2 1.6E-10 3.5E-15 83.4 9.8 43 5-49 13-55 (220)
307 TIGR00960 3a0501s02 Type II (G 99.2 1.1E-10 2.5E-15 84.0 9.0 42 6-49 17-58 (216)
308 cd03266 ABC_NatA_sodium_export 99.2 1.7E-10 3.7E-15 83.2 9.8 42 6-49 19-60 (218)
309 cd03223 ABCD_peroxisomal_ALDP 99.2 5.7E-10 1.2E-14 77.2 12.0 122 6-149 15-148 (166)
310 PRK10908 cell division protein 99.2 2.1E-10 4.5E-15 83.0 10.1 43 5-49 15-57 (222)
311 cd03267 ABC_NatA_like Similar 99.2 3.4E-10 7.3E-15 82.6 11.3 45 4-50 33-77 (236)
312 KOG0088 GTPase Rab21, small G 99.2 2.9E-11 6.2E-16 80.8 5.0 121 21-156 14-136 (218)
313 cd03269 ABC_putative_ATPase Th 99.2 2.1E-10 4.6E-15 82.2 9.9 43 5-49 13-55 (210)
314 cd01858 NGP_1 NGP-1. Autoanti 99.2 7.5E-11 1.6E-15 80.8 7.2 56 20-80 102-157 (157)
315 KOG1707 Predicted Ras related/ 99.2 1.8E-10 4E-15 91.0 10.2 123 19-156 8-133 (625)
316 PRK09602 translation-associate 99.2 7.1E-10 1.5E-14 86.4 13.4 89 21-115 2-113 (396)
317 PRK13543 cytochrome c biogenes 99.2 4.3E-10 9.3E-15 80.9 11.4 43 5-49 24-66 (214)
318 cd03213 ABCG_EPDR ABCG transpo 99.2 3.7E-10 8E-15 80.1 10.9 134 5-148 22-170 (194)
319 TIGR01288 nodI ATP-binding ABC 99.2 2.1E-10 4.5E-15 86.7 10.1 43 5-49 17-59 (303)
320 cd03268 ABC_BcrA_bacitracin_re 99.2 2.2E-10 4.9E-15 82.0 9.8 43 5-49 13-55 (208)
321 cd03221 ABCF_EF-3 ABCF_EF-3 E 99.2 3.9E-10 8.5E-15 76.2 10.4 112 6-148 14-126 (144)
322 cd03263 ABC_subfamily_A The AB 99.2 1.8E-10 3.8E-15 83.2 9.2 43 5-49 15-57 (220)
323 COG4988 CydD ABC-type transpor 99.2 1.4E-10 2.9E-15 92.1 9.1 136 6-149 335-515 (559)
324 COG3845 ABC-type uncharacteriz 99.2 9.2E-11 2E-15 91.3 8.0 134 8-147 20-198 (501)
325 TIGR01189 ccmA heme ABC export 99.2 3.7E-10 8E-15 80.3 10.6 43 5-49 13-55 (198)
326 cd03224 ABC_TM1139_LivF_branch 99.2 1.8E-10 3.9E-15 83.2 9.0 42 6-49 14-55 (222)
327 PRK11248 tauB taurine transpor 99.2 6.4E-10 1.4E-14 82.1 12.0 43 5-49 14-56 (255)
328 COG0488 Uup ATPase components 99.2 1.5E-10 3.3E-15 92.8 9.2 48 3-52 14-61 (530)
329 TIGR03410 urea_trans_UrtE urea 99.2 1.7E-10 3.7E-15 83.8 8.6 42 6-49 14-55 (230)
330 COG4152 ABC-type uncharacteriz 99.2 1.2E-10 2.7E-15 83.5 7.5 136 3-148 13-189 (300)
331 cd03225 ABC_cobalt_CbiO_domain 99.2 2E-10 4.4E-15 82.4 8.8 43 5-49 14-56 (211)
332 cd03217 ABC_FeS_Assembly ABC-t 99.2 3.1E-10 6.7E-15 80.8 9.6 137 6-148 14-163 (200)
333 cd03262 ABC_HisP_GlnQ_permease 99.2 3E-10 6.5E-15 81.6 9.5 42 6-49 14-55 (213)
334 cd03296 ABC_CysA_sulfate_impor 99.2 6.4E-10 1.4E-14 81.3 11.4 43 5-49 15-57 (239)
335 cd03222 ABC_RNaseL_inhibitor T 99.2 7.1E-10 1.5E-14 77.3 11.0 116 7-148 15-131 (177)
336 PRK11000 maltose/maltodextrin 99.2 3.7E-10 8.1E-15 87.5 10.6 44 5-50 16-59 (369)
337 PRK11650 ugpC glycerol-3-phosp 99.2 3.6E-10 7.8E-15 87.1 10.3 44 5-50 17-60 (356)
338 TIGR01186 proV glycine betaine 99.2 2.4E-10 5.2E-15 88.1 9.2 45 4-50 5-49 (363)
339 cd01899 Ygr210 Ygr210 subfamil 99.2 5.5E-10 1.2E-14 84.6 11.0 87 23-115 1-110 (318)
340 KOG0395 Ras-related GTPase [Ge 99.2 5.4E-10 1.2E-14 79.2 10.2 126 20-159 3-129 (196)
341 COG3276 SelB Selenocysteine-sp 99.2 5.2E-10 1.1E-14 86.1 10.7 123 22-162 2-125 (447)
342 PRK11432 fbpC ferric transport 99.2 3.6E-10 7.9E-15 86.9 10.0 44 5-50 19-62 (351)
343 PRK13540 cytochrome c biogenes 99.1 3.3E-10 7.1E-15 80.7 9.1 43 5-49 14-56 (200)
344 TIGR02211 LolD_lipo_ex lipopro 99.1 3.3E-10 7.2E-15 81.8 9.1 42 6-49 19-60 (221)
345 TIGR03608 L_ocin_972_ABC putat 99.1 2.2E-10 4.8E-15 81.9 8.1 43 5-49 11-53 (206)
346 cd03226 ABC_cobalt_CbiO_domain 99.1 6E-10 1.3E-14 79.6 10.3 43 5-49 13-55 (205)
347 PF03193 DUF258: Protein of un 99.1 3.4E-11 7.3E-16 82.1 3.6 62 21-85 36-102 (161)
348 PRK10895 lipopolysaccharide AB 99.1 2.4E-10 5.3E-15 83.6 8.3 42 6-49 17-58 (241)
349 cd03258 ABC_MetN_methionine_tr 99.1 4E-10 8.6E-15 82.1 9.4 42 6-49 19-60 (233)
350 cd03295 ABC_OpuCA_Osmoprotecti 99.1 4.8E-10 1E-14 82.1 9.9 43 5-49 14-56 (242)
351 PRK13539 cytochrome c biogenes 99.1 6.2E-10 1.4E-14 79.7 10.2 43 5-49 15-57 (207)
352 cd03298 ABC_ThiQ_thiamine_tran 99.1 7.7E-10 1.7E-14 79.4 10.7 38 10-49 16-53 (211)
353 COG0410 LivF ABC-type branched 99.1 2.2E-10 4.8E-15 81.4 7.6 46 3-50 14-59 (237)
354 TIGR03522 GldA_ABC_ATP gliding 99.1 2.5E-10 5.5E-15 86.2 8.5 44 4-49 14-57 (301)
355 COG1127 Ttg2A ABC-type transpo 99.1 2.9E-10 6.2E-15 81.4 8.1 47 3-51 19-65 (263)
356 PRK11629 lolD lipoprotein tran 99.1 4.5E-10 9.6E-15 81.8 9.4 42 6-49 23-64 (233)
357 KOG0393 Ras-related small GTPa 99.1 1.2E-10 2.6E-15 81.5 6.1 116 20-153 4-124 (198)
358 cd03292 ABC_FtsE_transporter F 99.1 3.4E-10 7.3E-15 81.4 8.7 42 6-49 15-56 (214)
359 TIGR03265 PhnT2 putative 2-ami 99.1 4.1E-10 8.9E-15 86.7 9.6 44 5-50 17-60 (353)
360 TIGR02314 ABC_MetN D-methionin 99.1 4.1E-10 8.8E-15 86.3 9.4 43 6-50 19-61 (343)
361 TIGR01166 cbiO cobalt transpor 99.1 7.5E-10 1.6E-14 78.2 10.2 44 4-49 4-47 (190)
362 PRK10247 putative ABC transpor 99.1 4.6E-10 1E-14 81.4 9.3 43 5-49 20-62 (225)
363 TIGR03864 PQQ_ABC_ATP ABC tran 99.1 6.3E-10 1.4E-14 81.2 10.0 44 5-50 14-57 (236)
364 COG0411 LivG ABC-type branched 99.1 6.5E-11 1.4E-15 84.7 4.6 46 3-50 15-60 (250)
365 PRK10584 putative ABC transpor 99.1 5.2E-10 1.1E-14 81.2 9.5 41 7-49 25-65 (228)
366 COG4586 ABC-type uncharacteriz 99.1 1.9E-10 4.2E-15 83.6 6.9 41 8-50 40-80 (325)
367 TIGR02868 CydC thiol reductant 99.1 1E-10 2.3E-15 94.7 6.1 43 6-50 349-391 (529)
368 COG1118 CysA ABC-type sulfate/ 99.1 1.3E-09 2.8E-14 80.6 11.2 47 4-52 14-60 (345)
369 COG2895 CysN GTPases - Sulfate 99.1 7.5E-10 1.6E-14 83.1 10.1 128 20-163 6-164 (431)
370 cd03257 ABC_NikE_OppD_transpor 99.1 1.3E-09 2.9E-14 79.0 11.1 42 6-49 19-60 (228)
371 COG1124 DppF ABC-type dipeptid 99.1 1.7E-09 3.6E-14 77.6 11.1 43 7-51 22-64 (252)
372 PRK09452 potA putrescine/sperm 99.1 7.5E-10 1.6E-14 85.8 10.2 43 6-50 28-70 (375)
373 TIGR01277 thiQ thiamine ABC tr 99.1 1.5E-09 3.2E-14 78.0 11.1 40 8-49 14-53 (213)
374 PRK11153 metN DL-methionine tr 99.1 4.8E-10 1E-14 86.1 9.1 42 6-49 19-60 (343)
375 PRK13548 hmuV hemin importer A 99.1 8.5E-10 1.8E-14 81.6 10.1 43 5-49 15-57 (258)
376 cd03300 ABC_PotA_N PotA is an 99.1 1.5E-09 3.2E-14 79.0 11.2 43 5-49 13-55 (232)
377 cd03264 ABC_drug_resistance_li 99.1 5.2E-10 1.1E-14 80.2 8.5 41 6-49 14-54 (211)
378 PRK13632 cbiO cobalt transport 99.1 6.9E-10 1.5E-14 82.6 9.4 42 6-49 23-64 (271)
379 cd03247 ABCC_cytochrome_bd The 99.1 2.3E-10 4.9E-15 80.0 6.4 133 6-148 16-156 (178)
380 TIGR00968 3a0106s01 sulfate AB 99.1 1.4E-09 3E-14 79.5 10.7 43 5-49 13-55 (237)
381 PRK11831 putative ABC transpor 99.1 9.4E-10 2E-14 81.8 9.9 42 6-49 21-62 (269)
382 cd03232 ABC_PDR_domain2 The pl 99.1 1.1E-09 2.4E-14 77.5 9.9 132 6-148 21-167 (192)
383 PRK11264 putative amino-acid A 99.1 1.3E-09 2.9E-14 80.1 10.6 43 5-49 16-58 (250)
384 PRK10851 sulfate/thiosulfate t 99.1 1E-09 2.2E-14 84.5 10.4 44 5-50 15-58 (353)
385 PRK09493 glnQ glutamine ABC tr 99.1 7.9E-10 1.7E-14 80.9 9.2 43 5-49 14-56 (240)
386 PRK09536 btuD corrinoid ABC tr 99.1 5.5E-10 1.2E-14 87.2 8.8 44 4-49 15-58 (402)
387 PRK15439 autoinducer 2 ABC tra 99.1 5.1E-10 1.1E-14 90.3 8.9 43 5-49 24-66 (510)
388 PRK11614 livF leucine/isoleuci 99.1 6.8E-10 1.5E-14 81.1 8.8 42 6-49 19-60 (237)
389 PRK13648 cbiO cobalt transport 99.1 5.6E-10 1.2E-14 83.0 8.4 41 7-49 24-64 (269)
390 KOG0097 GTPase Rab14, small G 99.1 8.5E-10 1.8E-14 72.5 8.1 125 21-160 12-138 (215)
391 KOG1486 GTP-binding protein DR 99.1 3.8E-10 8.1E-15 81.2 7.0 108 20-136 62-169 (364)
392 PRK10771 thiQ thiamine transpo 99.1 2.2E-09 4.7E-14 78.2 11.2 39 9-49 16-54 (232)
393 TIGR01184 ntrCD nitrate transp 99.1 2.2E-09 4.8E-14 78.1 11.2 39 9-49 2-40 (230)
394 PRK14250 phosphate ABC transpo 99.1 1.1E-09 2.4E-14 80.2 9.6 43 5-49 16-58 (241)
395 COG4555 NatA ABC-type Na+ tran 99.1 5E-10 1.1E-14 78.2 7.3 74 8-85 18-91 (245)
396 TIGR03740 galliderm_ABC gallid 99.1 2.4E-09 5.2E-14 77.5 11.3 42 6-49 14-55 (223)
397 COG3842 PotA ABC-type spermidi 99.1 8E-10 1.7E-14 84.1 9.0 46 4-51 17-62 (352)
398 PRK10575 iron-hydroxamate tran 99.1 7.8E-10 1.7E-14 82.1 8.8 43 5-49 24-66 (265)
399 cd01851 GBP Guanylate-binding 99.1 1E-08 2.2E-13 74.3 14.4 93 20-115 7-102 (224)
400 PRK13635 cbiO cobalt transport 99.1 6.6E-10 1.4E-14 83.1 8.4 41 7-49 22-62 (279)
401 cd03233 ABC_PDR_domain1 The pl 99.1 2.2E-09 4.7E-14 76.6 10.7 40 4-45 19-58 (202)
402 PRK11124 artP arginine transpo 99.1 9.5E-10 2.1E-14 80.5 9.1 43 5-49 15-57 (242)
403 PRK15177 Vi polysaccharide exp 99.1 2E-09 4.3E-14 77.4 10.5 42 7-50 2-43 (213)
404 TIGR03258 PhnT 2-aminoethylpho 99.1 1.2E-09 2.5E-14 84.4 9.9 41 6-48 19-59 (362)
405 COG4108 PrfC Peptide chain rel 99.1 3.5E-09 7.6E-14 81.6 12.0 123 19-158 11-153 (528)
406 PRK10070 glycine betaine trans 99.1 1E-09 2.2E-14 85.6 9.4 41 7-49 43-83 (400)
407 TIGR02769 nickel_nikE nickel i 99.1 1.8E-09 3.8E-14 80.2 10.3 43 5-49 24-66 (265)
408 cd03219 ABC_Mj1267_LivG_branch 99.1 1.1E-09 2.3E-14 79.9 9.0 42 6-49 14-55 (236)
409 COG4619 ABC-type uncharacteriz 99.1 1.3E-10 2.8E-15 79.0 3.8 47 2-50 13-59 (223)
410 PRK11607 potG putrescine trans 99.1 1.4E-09 3.1E-14 84.4 10.1 42 6-49 33-74 (377)
411 COG3638 ABC-type phosphate/pho 99.1 6.5E-10 1.4E-14 79.4 7.4 145 3-151 15-211 (258)
412 cd03256 ABC_PhnC_transporter A 99.1 1.1E-09 2.4E-14 80.1 8.9 43 5-49 14-56 (241)
413 PRK13644 cbiO cobalt transport 99.1 1.3E-09 2.8E-14 81.3 9.4 42 6-49 16-57 (274)
414 PRK15112 antimicrobial peptide 99.1 1.9E-09 4.1E-14 80.1 10.2 42 6-49 27-68 (267)
415 TIGR03005 ectoine_ehuA ectoine 99.1 2.6E-09 5.6E-14 78.7 10.8 43 5-49 13-55 (252)
416 PRK10253 iron-enterobactin tra 99.1 1.2E-09 2.6E-14 81.1 9.0 42 6-49 21-62 (265)
417 KOG0083 GTPase Rab26/Rab37, sm 99.1 5.8E-11 1.2E-15 77.2 1.7 113 25-152 2-117 (192)
418 TIGR03415 ABC_choXWV_ATP choli 99.1 1.1E-09 2.5E-14 84.8 9.1 44 5-50 37-80 (382)
419 KOG0448 Mitofusin 1 GTPase, in 99.1 1.9E-09 4.1E-14 86.8 10.4 129 21-162 110-285 (749)
420 TIGR02982 heterocyst_DevA ABC 99.1 1.1E-09 2.5E-14 79.0 8.5 43 5-49 18-60 (220)
421 COG0050 TufB GTPases - transla 99.1 6.1E-10 1.3E-14 81.8 6.9 119 19-153 11-143 (394)
422 PRK11174 cysteine/glutathione 99.1 4.2E-10 9E-15 92.3 6.8 42 6-50 364-405 (588)
423 TIGR02142 modC_ABC molybdenum 99.0 2.8E-09 6.1E-14 82.2 11.0 39 10-50 15-53 (354)
424 cd04178 Nucleostemin_like Nucl 99.0 7.1E-10 1.5E-14 77.0 6.9 55 21-80 118-172 (172)
425 TIGR02315 ABC_phnC phosphonate 99.0 1.7E-09 3.7E-14 79.2 9.3 43 5-49 15-57 (243)
426 TIGR03873 F420-0_ABC_ATP propo 99.0 1.4E-09 3E-14 80.3 8.8 43 5-49 14-56 (256)
427 PRK11144 modC molybdate transp 99.0 2.9E-09 6.2E-14 82.1 10.9 39 10-50 16-54 (352)
428 KOG0458 Elongation factor 1 al 99.0 4.3E-09 9.3E-14 83.4 11.9 138 11-164 168-341 (603)
429 KOG0447 Dynamin-like GTP bindi 99.0 4.1E-09 8.9E-14 83.4 11.6 141 20-163 308-507 (980)
430 PRK09544 znuC high-affinity zi 99.0 5.9E-09 1.3E-13 76.8 12.0 42 6-49 18-59 (251)
431 PRK13638 cbiO cobalt transport 99.0 2E-09 4.4E-14 80.1 9.7 43 5-49 14-56 (271)
432 PRK13768 GTPase; Provisional 99.0 1.5E-09 3.3E-14 79.9 8.9 80 71-153 98-177 (253)
433 PRK10619 histidine/lysine/argi 99.0 2E-09 4.3E-14 79.5 9.5 43 5-49 18-60 (257)
434 COG2884 FtsE Predicted ATPase 99.0 4E-09 8.7E-14 73.1 10.2 45 5-51 15-59 (223)
435 PRK13541 cytochrome c biogenes 99.0 3.6E-09 7.8E-14 75.0 10.4 37 11-49 19-55 (195)
436 KOG2486 Predicted GTPase [Gene 99.0 3.6E-09 7.8E-14 77.1 10.4 127 17-153 133-263 (320)
437 PRK13650 cbiO cobalt transport 99.0 9.8E-10 2.1E-14 82.2 7.7 41 7-49 22-62 (279)
438 cd03369 ABCC_NFT1 Domain 2 of 99.0 8.4E-10 1.8E-14 79.0 7.0 42 6-49 22-63 (207)
439 PRK13633 cobalt transporter AT 99.0 2.9E-09 6.2E-14 79.7 10.1 42 6-49 24-65 (280)
440 cd03237 ABC_RNaseL_inhibitor_d 99.0 9E-09 1.9E-13 75.6 12.5 44 7-50 9-55 (246)
441 cd00267 ABC_ATPase ABC (ATP-bi 99.0 2.2E-09 4.7E-14 73.5 8.6 126 6-148 13-139 (157)
442 cd03235 ABC_Metallic_Cations A 99.0 2.9E-09 6.2E-14 76.5 9.5 42 6-49 13-54 (213)
443 cd01857 HSR1_MMR1 HSR1/MMR1. 99.0 1.2E-09 2.5E-14 73.6 7.0 56 22-82 85-140 (141)
444 PRK11231 fecE iron-dicitrate t 99.0 1.4E-09 3.1E-14 80.2 8.1 43 5-49 15-57 (255)
445 PRK11300 livG leucine/isoleuci 99.0 2.1E-09 4.5E-14 79.3 9.0 42 6-49 19-60 (255)
446 cd03250 ABCC_MRP_domain1 Domai 99.0 5.9E-09 1.3E-13 74.4 11.0 42 6-49 19-60 (204)
447 PRK14247 phosphate ABC transpo 99.0 2.2E-09 4.8E-14 78.9 9.0 39 5-45 16-54 (250)
448 PRK13647 cbiO cobalt transport 99.0 1.6E-09 3.4E-14 80.9 8.2 42 6-49 19-60 (274)
449 PRK10762 D-ribose transporter 99.0 1.7E-09 3.7E-14 87.1 9.0 44 5-50 17-60 (501)
450 TIGR02857 CydD thiol reductant 99.0 1.1E-09 2.3E-14 88.8 7.8 43 6-50 336-378 (529)
451 COG0488 Uup ATPase components 99.0 1.8E-09 3.8E-14 86.8 8.8 53 6-60 336-388 (530)
452 PRK13652 cbiO cobalt transport 99.0 2.9E-09 6.2E-14 79.6 9.4 42 6-49 18-59 (277)
453 KOG0468 U5 snRNP-specific prot 99.0 1.7E-09 3.7E-14 87.0 8.4 119 17-151 125-262 (971)
454 PRK13657 cyclic beta-1,2-gluca 99.0 1.3E-09 2.8E-14 89.4 8.0 43 6-50 349-391 (588)
455 TIGR03348 VI_IcmF type VI secr 99.0 2.7E-09 5.8E-14 93.3 10.3 132 21-164 112-265 (1169)
456 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 99.0 1.1E-08 2.4E-13 74.2 11.9 45 3-49 33-77 (224)
457 cd03244 ABCC_MRP_domain2 Domai 99.0 2.3E-09 5E-14 77.4 8.3 42 6-49 18-59 (221)
458 PRK13640 cbiO cobalt transport 99.0 2.2E-09 4.8E-14 80.4 8.4 41 6-48 21-61 (282)
459 cd03299 ABC_ModC_like Archeal 99.0 6.1E-09 1.3E-13 76.0 10.5 41 7-49 14-54 (235)
460 PRK10790 putative multidrug tr 99.0 8.6E-10 1.9E-14 90.5 6.6 43 6-50 355-397 (592)
461 COG1134 TagH ABC-type polysacc 99.0 2.8E-09 6.1E-14 76.5 8.3 41 7-49 42-82 (249)
462 TIGR03411 urea_trans_UrtD urea 99.0 3.7E-09 8E-14 77.4 9.2 42 6-49 16-57 (242)
463 cd03251 ABCC_MsbA MsbA is an e 99.0 2.1E-09 4.6E-14 78.3 7.8 42 6-49 16-57 (234)
464 cd03254 ABCC_Glucan_exporter_l 99.0 1.5E-09 3.2E-14 78.9 7.0 42 6-49 17-58 (229)
465 cd03238 ABC_UvrA The excision 99.0 2.9E-09 6.4E-14 74.2 8.1 34 7-42 10-43 (176)
466 PRK13642 cbiO cobalt transport 99.0 3.2E-09 6.8E-14 79.4 8.8 41 7-49 22-62 (277)
467 TIGR01978 sufC FeS assembly AT 99.0 4.2E-09 9.2E-14 77.1 9.4 37 6-44 14-50 (243)
468 TIGR02324 CP_lyasePhnL phospho 99.0 5.2E-09 1.1E-13 75.8 9.7 42 6-49 22-63 (224)
469 TIGR03797 NHPM_micro_ABC2 NHPM 99.0 2E-09 4.3E-14 89.8 8.4 43 6-50 467-509 (686)
470 PRK13546 teichoic acids export 99.0 2.1E-08 4.5E-13 74.4 12.8 41 7-49 39-79 (264)
471 PRK13636 cbiO cobalt transport 99.0 4.2E-09 9.1E-14 78.9 9.2 43 5-49 19-61 (283)
472 PRK11288 araG L-arabinose tran 99.0 2.5E-09 5.4E-14 86.1 8.6 43 6-50 18-60 (501)
473 TIGR02770 nickel_nikD nickel i 99.0 9.9E-09 2.2E-13 74.6 10.9 37 8-46 2-38 (230)
474 cd01849 YlqF_related_GTPase Yl 99.0 2.2E-09 4.7E-14 73.4 7.0 56 20-80 100-155 (155)
475 cd01855 YqeH YqeH. YqeH is an 99.0 1.3E-09 2.9E-14 76.9 6.1 56 21-80 128-190 (190)
476 PRK09563 rbgA GTPase YlqF; Rev 99.0 5.2E-09 1.1E-13 78.5 9.6 63 20-87 121-183 (287)
477 PRK11176 lipid transporter ATP 99.0 1.5E-09 3.3E-14 88.9 7.1 43 6-50 357-399 (582)
478 TIGR03796 NHPM_micro_ABC1 NHPM 99.0 7.2E-10 1.6E-14 92.7 5.3 43 6-50 493-535 (710)
479 COG1122 CbiO ABC-type cobalt t 99.0 4.2E-09 9.2E-14 76.5 8.6 43 6-50 18-60 (235)
480 KOG0058 Peptide exporter, ABC 99.0 1.7E-09 3.6E-14 87.9 7.1 134 7-147 483-661 (716)
481 TIGR03597 GTPase_YqeH ribosome 99.0 3.4E-10 7.3E-15 87.4 3.1 121 21-151 155-279 (360)
482 PRK12288 GTPase RsgA; Reviewed 99.0 1.5E-09 3.2E-14 83.2 6.5 61 21-85 206-272 (347)
483 cd03234 ABCG_White The White s 99.0 9.4E-09 2E-13 74.5 10.5 39 5-45 20-58 (226)
484 PRK14246 phosphate ABC transpo 99.0 1.5E-08 3.3E-13 74.9 11.7 44 4-49 22-65 (257)
485 PRK10419 nikE nickel transport 99.0 9E-09 2E-13 76.5 10.6 43 5-49 25-67 (268)
486 PRK13549 xylose transporter AT 99.0 3.4E-09 7.3E-14 85.5 8.9 40 5-46 18-57 (506)
487 cd03253 ABCC_ATM1_transporter 99.0 2.5E-09 5.5E-14 78.0 7.4 43 5-49 14-56 (236)
488 cd03214 ABC_Iron-Siderophores_ 99.0 4.8E-10 1E-14 78.6 3.4 42 6-49 13-54 (180)
489 cd03260 ABC_PstB_phosphate_tra 99.0 3.2E-09 6.9E-14 77.0 7.9 38 5-44 13-50 (227)
490 PRK14267 phosphate ABC transpo 99.0 8.3E-09 1.8E-13 76.1 10.1 40 5-46 17-56 (253)
491 TIGR00958 3a01208 Conjugate Tr 99.0 1.5E-09 3.3E-14 90.7 6.9 43 6-50 495-537 (711)
492 PRK10982 galactose/methyl gala 99.0 3.6E-09 7.8E-14 85.1 8.8 43 5-49 11-53 (491)
493 KOG4252 GTP-binding protein [S 99.0 3.1E-10 6.8E-15 77.4 2.2 116 20-153 20-139 (246)
494 TIGR00972 3a0107s01c2 phosphat 99.0 9.4E-09 2E-13 75.5 10.2 41 5-47 14-54 (247)
495 COG1162 Predicted GTPases [Gen 99.0 2E-09 4.4E-14 79.8 6.6 63 21-85 165-231 (301)
496 PRK14845 translation initiatio 99.0 1.3E-08 2.8E-13 87.1 12.2 120 11-152 456-592 (1049)
497 PRK13637 cbiO cobalt transport 99.0 8.6E-09 1.9E-13 77.4 10.1 42 6-49 21-62 (287)
498 PRK10789 putative multidrug tr 99.0 1.8E-09 3.9E-14 88.2 6.9 43 6-50 329-371 (569)
499 COG1129 MglA ABC-type sugar tr 98.9 3.9E-09 8.4E-14 83.4 8.4 43 6-50 22-64 (500)
500 COG1117 PstB ABC-type phosphat 98.9 1.7E-08 3.8E-13 71.2 10.6 41 3-45 18-58 (253)
No 1
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=99.95 E-value=1.7e-27 Score=170.86 Aligned_cols=148 Identities=45% Similarity=0.771 Sum_probs=120.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+|+++|.+|+||||++|+|+|...+..+....+.|..+......+ .++.+.+|||||+.+.....+...+++.+++..
T Consensus 1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~-~g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~ 79 (212)
T PF04548_consen 1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEV-DGRQVTVIDTPGLFDSDGSDEEIIREIKRCLSL 79 (212)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEE-TTEEEEEEE--SSEETTEEHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeee-cceEEEEEeCCCCCCCcccHHHHHHHHHHHHHh
Confidence 4799999999999999999999998877766677788887777766 889999999999998777778888889998888
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcccCCCCccc
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKV 172 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~~~~~~l~~ 172 (174)
..+++|++++|++.. +++..+...++.+.+.+|.+.+++++||+|++|...+. .+++|+++..+..|++
T Consensus 80 ~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~--~~~~~l~~~~~~~l~~ 148 (212)
T PF04548_consen 80 CSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD--SLEDYLKKESNEALQE 148 (212)
T ss_dssp TTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT--THHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc--cHHHHHhccCchhHhH
Confidence 889999999999999 99999999999999999999999999999999998874 5888887533333433
No 2
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=99.95 E-value=2.7e-26 Score=162.97 Aligned_cols=141 Identities=55% Similarity=0.888 Sum_probs=120.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
++|+++|.+|+|||||+|+|+|...+..+....+.|..+......+ .+..+.++||||+.+.....+....++.+++..
T Consensus 1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVW-DGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEE-CCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 4799999999999999999999987766555556777777777666 788999999999998766666777888888887
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhccc
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRE 165 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~~ 165 (174)
+.+++|++++|+++. .++..+...++.+++.++...++++++++||+|.+.+ ..+++|+...
T Consensus 80 ~~~g~~~illVi~~~-~~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~--~~~~~~~~~~ 141 (196)
T cd01852 80 SAPGPHAFLLVVPLG-RFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG--GTLEDYLENS 141 (196)
T ss_pred cCCCCEEEEEEEECC-CcCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC--CcHHHHHHhc
Confidence 889999999999998 4999999999999999998888899999999999876 4778777663
No 3
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=99.90 E-value=9.9e-23 Score=151.12 Aligned_cols=147 Identities=25% Similarity=0.339 Sum_probs=106.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
...+|+++|.+|+||||++|+|+|...+..... .+.+.......... .+..+.+|||||+.+... ...+....+
T Consensus 37 ~~~rIllvGktGVGKSSliNsIlG~~v~~vs~f-~s~t~~~~~~~~~~-~G~~l~VIDTPGL~d~~~----~~e~~~~~i 110 (313)
T TIGR00991 37 SSLTILVMGKGGVGKSSTVNSIIGERIATVSAF-QSEGLRPMMVSRTR-AGFTLNIIDTPGLIEGGY----INDQAVNII 110 (313)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCcccccCC-CCcceeEEEEEEEE-CCeEEEEEECCCCCchHH----HHHHHHHHH
Confidence 458999999999999999999999875433211 12222222222333 678899999999998532 222222322
Q ss_pred Hh--ccCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcccCCCCccc
Q 030624 99 GM--AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKV 172 (174)
Q Consensus 99 ~~--~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~~~~~~l~~ 172 (174)
+. ...++|++|||.+.+ .+++..+...++.+++.+|...+.++++++||+|...+++.++++|+.+ ++..+++
T Consensus 111 k~~l~~~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd~~~~e~fv~~-~~~~lq~ 186 (313)
T TIGR00991 111 KRFLLGKTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPDGLEYNDFFSK-RSEALLR 186 (313)
T ss_pred HHHhhcCCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCCCCCHHHHHHh-cHHHHHH
Confidence 22 234799999997654 2788889999999999999998899999999999987766889999988 4444544
No 4
>COG1159 Era GTPase [General function prediction only]
Probab=99.89 E-value=1e-21 Score=143.22 Aligned_cols=126 Identities=22% Similarity=0.314 Sum_probs=108.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+...++++|++++|||||+|.|+|... +-.+....|+......+...++..+.++||||+... .+.+++.+.+.+
T Consensus 5 ksGfVaIiGrPNvGKSTLlN~l~G~Ki--sIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~p---k~~l~~~m~~~a 79 (298)
T COG1159 5 KSGFVAIIGRPNVGKSTLLNALVGQKI--SIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKP---KHALGELMNKAA 79 (298)
T ss_pred eEEEEEEEcCCCCcHHHHHHHHhcCce--EeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCc---chHHHHHHHHHH
Confidence 346899999999999999999999986 334667778878888877767889999999999975 577888888888
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
..++..+|+++||+|+++.++..++..++.++.. +.|+++++||.|...++
T Consensus 80 ~~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~-----~~pvil~iNKID~~~~~ 130 (298)
T COG1159 80 RSALKDVDLILFVVDADEGWGPGDEFILEQLKKT-----KTPVILVVNKIDKVKPK 130 (298)
T ss_pred HHHhccCcEEEEEEeccccCCccHHHHHHHHhhc-----CCCeEEEEEccccCCcH
Confidence 8999999999999999978999999999888882 15999999999998875
No 5
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.88 E-value=2.5e-21 Score=148.29 Aligned_cols=133 Identities=25% Similarity=0.266 Sum_probs=110.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
+.|+++|.+++|||||+|.|++....-. ...++.|++......+| .+..+.+|||+|+.+ ...+.+.+.++.+...
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV-~D~pGvTRDr~y~~~~~-~~~~f~lIDTgGl~~--~~~~~l~~~i~~Qa~~ 79 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIV-SDTPGVTRDRIYGDAEW-LGREFILIDTGGLDD--GDEDELQELIREQALI 79 (444)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCeeeEe-ecCCCCccCCccceeEE-cCceEEEEECCCCCc--CCchHHHHHHHHHHHH
Confidence 6899999999999999999999886433 35677888888888888 778899999999997 3346788889999999
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 163 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 163 (174)
+..++|++|||+|..+++++.|..+.+.|+... +|+++|+||+|....+ ...-+|..
T Consensus 80 Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~-----kpviLvvNK~D~~~~e-~~~~efys 136 (444)
T COG1160 80 AIEEADVILFVVDGREGITPADEEIAKILRRSK-----KPVILVVNKIDNLKAE-ELAYEFYS 136 (444)
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcC-----CCEEEEEEcccCchhh-hhHHHHHh
Confidence 999999999999999899999999998888542 6999999999997442 33444443
No 6
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=99.87 E-value=5.7e-21 Score=152.43 Aligned_cols=148 Identities=22% Similarity=0.312 Sum_probs=108.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+|+++|.+|+|||||+|+|++...+..... ...|+.+....... .+..+.+|||||+.+..... .....+.+++..
T Consensus 119 lrIvLVGKTGVGKSSLINSILGekvf~vss~-~~~TTr~~ei~~~i-dG~~L~VIDTPGL~dt~~dq-~~neeILk~Ik~ 195 (763)
T TIGR00993 119 LNILVLGKSGVGKSATINSIFGEVKFSTDAF-GMGTTSVQEIEGLV-QGVKIRVIDTPGLKSSASDQ-SKNEKILSSVKK 195 (763)
T ss_pred eEEEEECCCCCCHHHHHHHHhccccccccCC-CCCceEEEEEEEEE-CCceEEEEECCCCCccccch-HHHHHHHHHHHH
Confidence 6899999999999999999999886655432 23344443333333 67889999999999864332 234444444433
Q ss_pred c--cCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh-----hhHHHHhcccCCCCccc
Q 030624 101 A--KDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-----ETLEDYLGRECPKPLKV 172 (174)
Q Consensus 101 ~--~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~-----~~~~~~~~~~~~~~l~~ 172 (174)
+ ..++|++|||++.+. ..+.++...++.|++.||...++++|||+||+|...+++ .++++|+.+ ++..+++
T Consensus 196 ~Lsk~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg~ng~~~tye~fv~~-rs~~Lq~ 274 (763)
T TIGR00993 196 FIKKNPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDGPNGTPLSYDVFVAQ-RSHIVQQ 274 (763)
T ss_pred HHhcCCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCCCCCCCcCHHHHHhh-ChHHHHH
Confidence 2 246899999998752 334467889999999999999999999999999997543 579999987 5444544
No 7
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=99.85 E-value=9.3e-20 Score=133.22 Aligned_cols=135 Identities=29% Similarity=0.346 Sum_probs=97.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
...+|+++|.+|+|||||+|+|++...+... ...+.|.........+ ++..+.+|||||+.+..... .........+
T Consensus 30 ~~~~IllvG~tGvGKSSliNaLlg~~~~~v~-~~~~~T~~~~~~~~~~-~g~~i~vIDTPGl~~~~~~~-~~~~~~~~~I 106 (249)
T cd01853 30 FSLTILVLGKTGVGKSSTINSIFGERKAATS-AFQSETLRVREVSGTV-DGFKLNIIDTPGLLESVMDQ-RVNRKILSSI 106 (249)
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCcchhhH-HHHHHHHHHH
Confidence 3489999999999999999999998764443 2223455444444444 67789999999999853211 1222233333
Q ss_pred Hhc--cCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChh
Q 030624 99 GMA--KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE 156 (174)
Q Consensus 99 ~~~--~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~ 156 (174)
..+ ...+|+++|+...+ .+++..+...++.|.+.++...+.++++|+||+|...++..
T Consensus 107 ~~~l~~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~ 167 (249)
T cd01853 107 KRYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred HHHHhccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence 222 23679999998664 26788889999999999998888999999999999866543
No 8
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.83 E-value=2.4e-19 Score=116.97 Aligned_cols=116 Identities=23% Similarity=0.358 Sum_probs=78.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+|+++|.+|+|||||+|+|++......+ ...+.|.........+ .+..+.++||||+.+...... ....+.+.....
T Consensus 1 ~V~iiG~~~~GKSTlin~l~~~~~~~~~-~~~~~T~~~~~~~~~~-~~~~~~~vDtpG~~~~~~~~~-~~~~~~~~~~~~ 77 (116)
T PF01926_consen 1 RVAIIGRPNVGKSTLINALTGKKLAKVS-NIPGTTRDPVYGQFEY-NNKKFILVDTPGINDGESQDN-DGKEIRKFLEQI 77 (116)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSTSSEES-SSTTSSSSEEEEEEEE-TTEEEEEEESSSCSSSSHHHH-HHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHhcccccccc-ccccceeeeeeeeeee-ceeeEEEEeCCCCcccchhhH-HHHHHHHHHHHH
Confidence 6899999999999999999986543333 2344555554444445 778889999999987432221 112333444444
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
..+|++++|+++++..+..+...++.++ .. +|+++|+||
T Consensus 78 -~~~d~ii~vv~~~~~~~~~~~~~~~~l~----~~--~~~i~v~NK 116 (116)
T PF01926_consen 78 -SKSDLIIYVVDASNPITEDDKNILRELK----NK--KPIILVLNK 116 (116)
T ss_dssp -CTESEEEEEEETTSHSHHHHHHHHHHHH----TT--SEEEEEEES
T ss_pred -HHCCEEEEEEECCCCCCHHHHHHHHHHh----cC--CCEEEEEcC
Confidence 8889999999987533444556666663 22 699999998
No 9
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.81 E-value=1e-18 Score=129.84 Aligned_cols=121 Identities=21% Similarity=0.240 Sum_probs=83.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+|+++|++|+|||||+|+|++...... +....|+...........+..+.++||||+.... ....+.+.+.+...
T Consensus 2 ~V~liG~pnvGKSTLln~L~~~~~~~v--s~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~---~~l~~~~~~~~~~~ 76 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHGQKISIT--SPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKK---HSLNRLMMKEARSA 76 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhCCcEeec--CCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCc---chHHHHHHHHHHHH
Confidence 689999999999999999999864322 2233344334444444355678999999998642 23344455555556
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+..+|++++|+|+++.... +..+++.+... ..|+++|+||+|+...
T Consensus 77 l~~aDvvl~VvD~~~~~~~-~~~i~~~l~~~-----~~p~ilV~NK~Dl~~~ 122 (270)
T TIGR00436 77 IGGVDLILFVVDSDQWNGD-GEFVLTKLQNL-----KRPVVLTRNKLDNKFK 122 (270)
T ss_pred HhhCCEEEEEEECCCCCch-HHHHHHHHHhc-----CCCEEEEEECeeCCCH
Confidence 7788999999999854433 34444444432 2689999999999744
No 10
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.81 E-value=1.8e-19 Score=122.23 Aligned_cols=123 Identities=23% Similarity=0.247 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh-HHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~-~~~~~~~~~~~~ 99 (174)
.+|+++|.+++|||||+|+|+|.... .+ ..++.|.......+.+ .+..+.++|+||.++..... +. +-.++.+.
T Consensus 1 i~ialvG~PNvGKStLfN~Ltg~~~~-v~-n~pG~Tv~~~~g~~~~-~~~~~~lvDlPG~ysl~~~s~ee--~v~~~~l~ 75 (156)
T PF02421_consen 1 IRIALVGNPNVGKSTLFNALTGAKQK-VG-NWPGTTVEKKEGIFKL-GDQQVELVDLPGIYSLSSKSEEE--RVARDYLL 75 (156)
T ss_dssp -EEEEEESTTSSHHHHHHHHHTTSEE-EE-ESTTSSSEEEEEEEEE-TTEEEEEEE----SSSSSSSHHH--HHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCce-ec-CCCCCCeeeeeEEEEe-cCceEEEEECCCcccCCCCCcHH--HHHHHHHh
Confidence 37999999999999999999999843 33 4567777777777766 77899999999988743322 21 11222222
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhh
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET 157 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~ 157 (174)
..++|++++|+|++ .+.. +...+..+.+. . .|+++++||+|+.+..+..
T Consensus 76 --~~~~D~ii~VvDa~-~l~r-~l~l~~ql~e~---g--~P~vvvlN~~D~a~~~g~~ 124 (156)
T PF02421_consen 76 --SEKPDLIIVVVDAT-NLER-NLYLTLQLLEL---G--IPVVVVLNKMDEAERKGIE 124 (156)
T ss_dssp --HTSSSEEEEEEEGG-GHHH-HHHHHHHHHHT---T--SSEEEEEETHHHHHHTTEE
T ss_pred --hcCCCEEEEECCCC-CHHH-HHHHHHHHHHc---C--CCEEEEEeCHHHHHHcCCE
Confidence 46789999999998 5422 23333334433 2 7999999999998765433
No 11
>PRK00089 era GTPase Era; Reviewed
Probab=99.80 E-value=2.5e-18 Score=129.11 Aligned_cols=123 Identities=22% Similarity=0.303 Sum_probs=87.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
...|+++|++|||||||+|+|+|...... +....|+...........+..+.++||||+.+.. ....+.+...+.
T Consensus 5 ~g~V~iiG~pn~GKSTLin~L~g~~~~~v--s~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~---~~l~~~~~~~~~ 79 (292)
T PRK00089 5 SGFVAIVGRPNVGKSTLLNALVGQKISIV--SPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPK---RALNRAMNKAAW 79 (292)
T ss_pred eEEEEEECCCCCCHHHHHHHHhCCceeec--CCCCCcccccEEEEEEcCCceEEEEECCCCCCch---hHHHHHHHHHHH
Confidence 46899999999999999999999865322 2233344333333333244689999999998643 334455555666
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.....+|++++|+|+++.++..+...++.+... ..|+++|+||+|+..
T Consensus 80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~-----~~pvilVlNKiDl~~ 127 (292)
T PRK00089 80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKV-----KTPVILVLNKIDLVK 127 (292)
T ss_pred HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhc-----CCCEEEEEECCcCCC
Confidence 677889999999999866777666666665532 259999999999984
No 12
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.80 E-value=4.4e-18 Score=118.09 Aligned_cols=128 Identities=20% Similarity=0.265 Sum_probs=97.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh---HHHHH
Q 030624 16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EFVGK 92 (174)
Q Consensus 16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~---~~~~~ 92 (174)
|.....-|+++|.+++|||||||+|++......-...++.|...++..+ ...++++|.||+.-..... +.+.+
T Consensus 20 P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~----~~~~~lVDlPGYGyAkv~k~~~e~w~~ 95 (200)
T COG0218 20 PEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEV----DDELRLVDLPGYGYAKVPKEVKEKWKK 95 (200)
T ss_pred CCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEe----cCcEEEEeCCCcccccCCHHHHHHHHH
Confidence 3334478999999999999999999997633232355677777776654 2338899999999766544 34445
Q ss_pred HHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 93 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+.+++..... ...+++++|+...+...|+++++++.+.- .|+++++||+|+...
T Consensus 96 ~i~~YL~~R~~-L~~vvlliD~r~~~~~~D~em~~~l~~~~-----i~~~vv~tK~DKi~~ 150 (200)
T COG0218 96 LIEEYLEKRAN-LKGVVLLIDARHPPKDLDREMIEFLLELG-----IPVIVVLTKADKLKK 150 (200)
T ss_pred HHHHHHhhchh-heEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCeEEEEEccccCCh
Confidence 55555554443 78899999998788888999999988874 689999999999985
No 13
>PRK15494 era GTPase Era; Provisional
Probab=99.79 E-value=7.6e-18 Score=128.61 Aligned_cols=133 Identities=22% Similarity=0.285 Sum_probs=88.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+|+++|.+|+|||||+|+|++....... .....|.........+ ++..+.++||||+.+.. ..+...+.+.+..
T Consensus 53 ~kV~ivG~~nvGKSTLin~l~~~k~~ivs-~k~~tTr~~~~~~~~~-~~~qi~~~DTpG~~~~~---~~l~~~~~r~~~~ 127 (339)
T PRK15494 53 VSVCIIGRPNSGKSTLLNRIIGEKLSIVT-PKVQTTRSIITGIITL-KDTQVILYDTPGIFEPK---GSLEKAMVRCAWS 127 (339)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCCceeecc-CCCCCccCcEEEEEEe-CCeEEEEEECCCcCCCc---ccHHHHHHHHHHH
Confidence 48999999999999999999987642211 1222333222223334 56789999999997532 2234445555545
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 163 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 163 (174)
++..+|++++|+|..+.++..+..+++.++... .|.++|+||+|+.......+.+++.
T Consensus 128 ~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~-----~p~IlViNKiDl~~~~~~~~~~~l~ 185 (339)
T PRK15494 128 SLHSADLVLLIIDSLKSFDDITHNILDKLRSLN-----IVPIFLLNKIDIESKYLNDIKAFLT 185 (339)
T ss_pred HhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcC-----CCEEEEEEhhcCccccHHHHHHHHH
Confidence 577899999999998777777777766665431 4678899999986542223344443
No 14
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.79 E-value=8e-19 Score=134.60 Aligned_cols=139 Identities=22% Similarity=0.242 Sum_probs=103.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
...+++++|.+++|||||+|+|++....-.. ...+.|.+.-...+++ +++.+.++||.|+-....-.+...+.-....
T Consensus 177 ~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~-~~aGTTRD~I~~~~e~-~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt 254 (444)
T COG1160 177 DPIKIAIIGRPNVGKSSLINAILGEERVIVS-DIAGTTRDSIDIEFER-DGRKYVLIDTAGIRRKGKITESVEKYSVART 254 (444)
T ss_pred CceEEEEEeCCCCCchHHHHHhccCceEEec-CCCCccccceeeeEEE-CCeEEEEEECCCCCcccccccceEEEeehhh
Confidence 4589999999999999999999998754332 4456677766667776 8899999999999875443332221111122
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 164 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 164 (174)
..+...+|++++|+|++++++.++......+.+.. ++++||+||||+.+.+..+++++.++
T Consensus 255 ~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g-----~~~vIvvNKWDl~~~~~~~~~~~k~~ 315 (444)
T COG1160 255 LKAIERADVVLLVIDATEGISEQDLRIAGLIEEAG-----RGIVIVVNKWDLVEEDEATMEEFKKK 315 (444)
T ss_pred HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcC-----CCeEEEEEccccCCchhhHHHHHHHH
Confidence 22556779999999999999999999998888875 68999999999988644455555433
No 15
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=6.6e-18 Score=115.18 Aligned_cols=121 Identities=25% Similarity=0.292 Sum_probs=84.4
Q ss_pred EEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccC
Q 030624 24 VLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD 103 (174)
Q Consensus 24 ~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 103 (174)
+++|.+|+|||||+|.|++....... ...+.|.........+ .+..+.++||||+.+... .....+.........
T Consensus 1 ~l~G~~~~GKssl~~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~i~DtpG~~~~~~---~~~~~~~~~~~~~~~ 75 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVE-DTPGVTRDRIYGEAEW-GGREFILIDTGGIEPDDE---GISKEIREQAELAIE 75 (157)
T ss_pred CccCCCCCCHHHHHHHHhCCcEEeec-CCCCceeCceeEEEEE-CCeEEEEEECCCCCCchh---HHHHHHHHHHHHHHH
Confidence 47899999999999999987532222 2233444444444545 567899999999987432 334444444445567
Q ss_pred CceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 104 GIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 104 ~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
++|++++++|..+.....+....+.++... .|+++|+||+|+....
T Consensus 76 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~-----~piiiv~nK~D~~~~~ 121 (157)
T cd01894 76 EADVILFVVDGREGLTPADEEIAKYLRKSK-----KPVILVVNKVDNIKEE 121 (157)
T ss_pred hCCEEEEEEeccccCCccHHHHHHHHHhcC-----CCEEEEEECcccCChH
Confidence 789999999998666666666655555432 6999999999998753
No 16
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.78 E-value=1.4e-17 Score=131.17 Aligned_cols=122 Identities=25% Similarity=0.281 Sum_probs=95.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+|+++|.+|+|||||+|.|++...... ....+.|.........+ .+..+.++||||+... .+.+...+.+....+
T Consensus 1 ~i~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~t~d~~~~~~~~-~~~~~~liDTpG~~~~---~~~~~~~~~~~~~~~ 75 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIV-SDTPGVTRDRKYGDAEW-GGREFILIDTGGIEED---DDGLDKQIREQAEIA 75 (429)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCccee-cCCCCcccCceEEEEEE-CCeEEEEEECCCCCCc---chhHHHHHHHHHHHH
Confidence 489999999999999999999763222 23345666666666666 7788999999998642 244556666777777
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+..+|++++|+|+.++++..+..+.+.+++.. +|+++|+||+|+...
T Consensus 76 ~~~ad~vl~vvD~~~~~~~~d~~i~~~l~~~~-----~piilVvNK~D~~~~ 122 (429)
T TIGR03594 76 IEEADVILFVVDGREGLTPEDEEIAKWLRKSG-----KPVILVANKIDGKKE 122 (429)
T ss_pred HhhCCEEEEEEeCCCCCCHHHHHHHHHHHHhC-----CCEEEEEECccCCcc
Confidence 88899999999998788888888888777642 689999999998764
No 17
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.78 E-value=2e-17 Score=114.37 Aligned_cols=127 Identities=20% Similarity=0.204 Sum_probs=80.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|.+|+|||||+|+|++....... ...+.+.......... .+..+.+|||||+.+.................
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~ 79 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGEERVIVS-DIAGTTRDSIDVPFEY-DGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTL 79 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCccceecc-CCCCCccCceeeEEEE-CCeeEEEEECCCCccccchhccHHHHHHHHHH
Confidence 368999999999999999999987532222 1222333332233333 56678999999998643211111111111122
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+|++++|+|+.++.+.....++..+... . .|+++++||+|+...
T Consensus 80 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~---~--~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 80 KAIERADVVLLVIDATEGITEQDLRIAGLILEE---G--KALVIVVNKWDLVEK 128 (174)
T ss_pred HHHhhcCeEEEEEeCCCCcchhHHHHHHHHHhc---C--CCEEEEEeccccCCc
Confidence 345678999999999867666555554443332 2 689999999999765
No 18
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.78 E-value=2.4e-17 Score=127.62 Aligned_cols=125 Identities=19% Similarity=0.208 Sum_probs=83.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
.|+|+|.++||||||+|+|++..+ .. ...+..|.......+.+.+.+.+.++||||+.+.......+...+.+.
T Consensus 161 dValVG~PNaGKSTLln~Lt~~k~-~v-s~~p~TT~~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~---- 234 (390)
T PRK12298 161 DVGLLGLPNAGKSTFIRAVSAAKP-KV-ADYPFTTLVPNLGVVRVDDERSFVVADIPGLIEGASEGAGLGIRFLKH---- 234 (390)
T ss_pred cEEEEcCCCCCHHHHHHHHhCCcc-cc-cCCCCCccCcEEEEEEeCCCcEEEEEeCCCccccccchhhHHHHHHHH----
Confidence 599999999999999999998764 12 122344544455445553346799999999987554444455555554
Q ss_pred cCCceEEEEEEeCCCCC---C--HHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRF---S--QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~---~--~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++|++++|+|++ .. . .....+++.+......-..+|.++|+||+|+...
T Consensus 235 i~radvlL~VVD~s-~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 235 LERCRVLLHLIDIA-PIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred HHhCCEEEEEeccC-cccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 34569999999987 22 1 2224555555554222123689999999998754
No 19
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.77 E-value=4.2e-17 Score=124.01 Aligned_cols=126 Identities=18% Similarity=0.168 Sum_probs=85.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
.|+++|.++||||||+|+|++..+- .. ..+..|.......+.+.+...+.++|+||+.+.......+..++.+.+.
T Consensus 160 dVglVG~PNaGKSTLln~ls~a~~~-va-~ypfTT~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~~gLg~~flrhie-- 235 (335)
T PRK12299 160 DVGLVGLPNAGKSTLISAVSAAKPK-IA-DYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGHRFLKHIE-- 235 (335)
T ss_pred CEEEEcCCCCCHHHHHHHHHcCCCc-cC-CCCCceeCceEEEEEeCCCcEEEEEeCCCccCCCCccccHHHHHHHHhh--
Confidence 4899999999999999999986532 21 2234455555555555355789999999998755444445555555544
Q ss_pred cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+++++++|+|+++.-+.++ ..+.+.+......-..+|+++|+||+|+...
T Consensus 236 --~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 236 --RTRLLLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred --hcCEEEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 5599999999984333333 4555556554322123699999999998754
No 20
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.77 E-value=2.4e-17 Score=113.08 Aligned_cols=123 Identities=23% Similarity=0.288 Sum_probs=80.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|++|+|||||+|++++........ .. .+............+..+.++||||+....... ...+.....
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~~---~~~~~~~~~ 77 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVGQKISIVSP-KP-QTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKL---GERMVKAAW 77 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCceEeccC-CC-CceeceEEEEEEcCCeEEEEEECCCCCcchHHH---HHHHHHHHH
Confidence 3789999999999999999999976432221 11 222222222222245678999999998643221 122333334
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.....+|.+++|++.++........+.+.+... ..|+++++||+|+..
T Consensus 78 ~~~~~~d~i~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 78 SALKDVDLVLFVVDASEPIGEGDEFILELLKKS-----KTPVILVLNKIDLVK 125 (168)
T ss_pred HHHHhCCEEEEEEECCCccCchHHHHHHHHHHh-----CCCEEEEEEchhccc
Confidence 456778999999999866555556665555543 158999999999974
No 21
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.77 E-value=4.9e-17 Score=113.85 Aligned_cols=127 Identities=18% Similarity=0.274 Sum_probs=81.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
.....+|+++|++|+|||||+|.|++...........+.|....... . +..+.++||||+......... ...+..
T Consensus 15 ~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~liDtpG~~~~~~~~~~-~~~~~~ 89 (179)
T TIGR03598 15 PDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFE--V--NDGFRLVDLPGYGYAKVSKEE-KEKWQK 89 (179)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEE--e--CCcEEEEeCCCCccccCChhH-HHHHHH
Confidence 34458999999999999999999998752111112233344333222 2 246899999998764332221 112221
Q ss_pred HH---HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CI---GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~---~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.. ......+|++++|+|.+++++..+...++.+... ..|+++++||+|+..+
T Consensus 90 ~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~-----~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 90 LIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRER-----GIPVLIVLTKADKLKK 144 (179)
T ss_pred HHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCH
Confidence 11 1123456899999999877888887766655442 2689999999999754
No 22
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.76 E-value=2.2e-17 Score=121.85 Aligned_cols=126 Identities=18% Similarity=0.193 Sum_probs=85.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE-FVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~-~~~~~~~~~~~ 99 (174)
+++++.|.+++|||||++.+++..+ .-.+.+..|....+..+++ +..++.+|||||+.+...... .+.++-.-+++
T Consensus 169 pTivVaG~PNVGKSSlv~~lT~Akp--EvA~YPFTTK~i~vGhfe~-~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~ 245 (346)
T COG1084 169 PTIVVAGYPNVGKSSLVRKLTTAKP--EVAPYPFTTKGIHVGHFER-GYLRIQVIDTPGLLDRPLEERNEIERQAILALR 245 (346)
T ss_pred CeEEEecCCCCcHHHHHHHHhcCCC--ccCCCCccccceeEeeeec-CCceEEEecCCcccCCChHHhcHHHHHHHHHHH
Confidence 8999999999999999999999875 3334555666666666665 667999999999998443221 12222222222
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
--.++|+|++|+++.+...-...+..+.+.. .....|+++|+||+|..+.
T Consensus 246 ---hl~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk-~~f~~p~v~V~nK~D~~~~ 295 (346)
T COG1084 246 ---HLAGVILFLFDPSETCGYSLEEQISLLEEIK-ELFKAPIVVVINKIDIADE 295 (346)
T ss_pred ---HhcCeEEEEEcCccccCCCHHHHHHHHHHHH-HhcCCCeEEEEecccccch
Confidence 2238899999998655555444444444442 2222689999999999855
No 23
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.76 E-value=2.6e-17 Score=113.89 Aligned_cols=125 Identities=21% Similarity=0.202 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCc-EEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ-VVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.|+++|.+|||||||+|+|.+... ..+. ....|.........+ .+. .+.++||||+.+...........+.+.
T Consensus 2 ~v~ivG~~~~GKStl~~~l~~~~~-~v~~-~~~~t~~~~~~~~~~-~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~--- 75 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKP-KIAD-YPFTTLVPNLGVVRV-DDGRSFVVADIPGLIEGASEGKGLGHRFLRH--- 75 (170)
T ss_pred CeEEECCCCCCHHHHHHHHhcCCc-cccC-CCccccCCcceEEEc-CCCCeEEEEecCcccCcccccCCchHHHHHH---
Confidence 589999999999999999998653 1111 122233333333334 444 899999999865322221222233322
Q ss_pred ccCCceEEEEEEeCCCC-CCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSR-FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~-~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+..+|++++|+|+++. -.... ..+.+.+.+........|+++|+||+|+...
T Consensus 76 -~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~ 129 (170)
T cd01898 76 -IERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDE 129 (170)
T ss_pred -HHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCc
Confidence 2356999999999844 12222 4555555554221123689999999998765
No 24
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=6e-17 Score=128.83 Aligned_cols=124 Identities=25% Similarity=0.229 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.++|+++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.++||||+... ...+...+...+.
T Consensus 38 ~~~V~IvG~~nvGKSSL~nrl~~~~~~~v~-~~~gvT~d~~~~~~~~-~~~~~~l~DT~G~~~~---~~~~~~~~~~~~~ 112 (472)
T PRK03003 38 LPVVAVVGRPNVGKSTLVNRILGRREAVVE-DVPGVTRDRVSYDAEW-NGRRFTVVDTGGWEPD---AKGLQASVAEQAE 112 (472)
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCcCccccc-CCCCCCEeeEEEEEEE-CCcEEEEEeCCCcCCc---chhHHHHHHHHHH
Confidence 478999999999999999999987542222 3344555555555555 6778999999998742 1234455666666
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.++..+|++|+|+|++++.+..+..+.+.++.. ..|+++|+||+|+...
T Consensus 113 ~~~~~aD~il~VvD~~~~~s~~~~~i~~~l~~~-----~~piilV~NK~Dl~~~ 161 (472)
T PRK03003 113 VAMRTADAVLFVVDATVGATATDEAVARVLRRS-----GKPVILAANKVDDERG 161 (472)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCcc
Confidence 677888999999999878887777777766642 2699999999998653
No 25
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.76 E-value=3.5e-17 Score=113.01 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=77.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.++++|++|+|||||+|+|++...... ...+.|........... .+..+.++||||... +.....
T Consensus 2 ~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~~-----------~~~~~~ 68 (168)
T cd01887 2 VVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEA-----------FTNMRA 68 (168)
T ss_pred EEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcHH-----------HHHHHH
Confidence 589999999999999999998764322 22233443333444431 256899999999764 222223
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
..+..+|++++|+|+++.........+..+... ..|+++|+||+|+....
T Consensus 69 ~~~~~~d~il~v~d~~~~~~~~~~~~~~~~~~~-----~~p~ivv~NK~Dl~~~~ 118 (168)
T cd01887 69 RGASLTDIAILVVAADDGVMPQTIEAIKLAKAA-----NVPFIVALNKIDKPNAN 118 (168)
T ss_pred HHHhhcCEEEEEEECCCCccHHHHHHHHHHHHc-----CCCEEEEEEceeccccc
Confidence 345678999999999866555555555554432 26899999999987543
No 26
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.76 E-value=3.5e-17 Score=112.43 Aligned_cols=117 Identities=22% Similarity=0.331 Sum_probs=77.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.|+++|.+|+|||||+|+|++..... ......+.|.........+..+..+.+|||||..+ +......
T Consensus 2 ~i~i~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~-----------~~~~~~~ 70 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-----------FIKNMLA 70 (164)
T ss_pred EEEEEecCCCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEecCCcEEEEEECCChHH-----------HHHHHHh
Confidence 68999999999999999999753110 11111233444444444442266899999999753 2233334
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|+++.......+.+..+... + .+|+++++||+|+...
T Consensus 71 ~~~~ad~ii~V~d~~~~~~~~~~~~~~~~~~~-~---~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 71 GAGGIDLVLLVVAADEGIMPQTREHLEILELL-G---IKRGLVVLTKADLVDE 119 (164)
T ss_pred hhhcCCEEEEEEECCCCccHhHHHHHHHHHHh-C---CCcEEEEEECccccCH
Confidence 56678999999999865555555555444332 1 1489999999999754
No 27
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.76 E-value=5.5e-17 Score=128.06 Aligned_cols=122 Identities=24% Similarity=0.247 Sum_probs=92.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+|+++|.+|+|||||+|.|++....... ...+.|.........+ .+..+.+|||||+.+.. +.....+......
T Consensus 2 ~~I~ivG~~~vGKStL~n~l~~~~~~~v~-~~~~~t~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~~ 76 (435)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVA-DTPGVTRDRIYGEAEW-LGREFILIDTGGIEPDD---DGFEKQIREQAEL 76 (435)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCCcccceEEEEEE-CCcEEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 57999999999999999999987643222 2344555555555666 67889999999998622 2244556666666
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
++..+|++++|+|+.++++..+....++++.. ..|+++|+||+|+..
T Consensus 77 ~~~~ad~il~vvd~~~~~~~~~~~~~~~l~~~-----~~piilv~NK~D~~~ 123 (435)
T PRK00093 77 AIEEADVILFVVDGRAGLTPADEEIAKILRKS-----NKPVILVVNKVDGPD 123 (435)
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCcEEEEEECccCcc
Confidence 77888999999999878888887777777664 269999999999754
No 28
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.76 E-value=8.2e-17 Score=109.67 Aligned_cols=122 Identities=25% Similarity=0.292 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+++++|++|+|||||+|++++....... ...+.+.........+ ....+.++||||+.+.... ...........
T Consensus 2 ~~i~l~G~~~~GKstli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~i~DtpG~~~~~~~---~~~~~~~~~~~ 76 (157)
T cd04164 2 IKVVIVGKPNVGKSSLLNALAGRDRAIVS-DIAGTTRDVIEESIDI-GGIPVRLIDTAGIRETEDE---IEKIGIERARE 76 (157)
T ss_pred cEEEEECCCCCCHHHHHHHHHCCceEecc-CCCCCccceEEEEEEe-CCEEEEEEECCCcCCCcch---HHHHHHHHHHH
Confidence 68999999999999999999987632222 1233333333334444 5668899999999875422 11222222233
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
...++|++++|+|++++.+..+...+.. . .. .|+++|+||+|+....
T Consensus 77 ~~~~~~~~v~v~d~~~~~~~~~~~~~~~---~--~~--~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 77 AIEEADLVLFVIDASRGLDEEDLEILEL---P--AD--KPIIVVLNKSDLLPDS 123 (157)
T ss_pred HHhhCCEEEEEEECCCCCCHHHHHHHHh---h--cC--CCEEEEEEchhcCCcc
Confidence 4567899999999986666655544432 1 12 6999999999998653
No 29
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.75 E-value=1.1e-17 Score=118.40 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=83.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
..+++++|+.++|||||+++|++..... ..+...+.|.......+.+ ++..+.++||||+.+
T Consensus 2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~--- 77 (195)
T cd01884 2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD--- 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecC-CCeEEEEEECcCHHH---
Confidence 3689999999999999999998642100 0111334555555555554 567889999999864
Q ss_pred ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+..........+|++++|+|+..+....+.+.+..+.... . +++++++||+|+...
T Consensus 78 --------~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-~---~~iIvviNK~D~~~~ 133 (195)
T cd01884 78 --------YIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVG-V---PYIVVFLNKADMVDD 133 (195)
T ss_pred --------HHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcC-C---CcEEEEEeCCCCCCc
Confidence 3444444566789999999998788888888877766542 1 247899999999743
No 30
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.75 E-value=9.1e-17 Score=126.82 Aligned_cols=128 Identities=21% Similarity=0.188 Sum_probs=88.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
...+++++|.+|+|||||+|+|++....... ...+.|.........+ ++..+.++||||+.......+..........
T Consensus 172 ~~~~v~ivG~~n~GKStlin~ll~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~ 249 (435)
T PRK00093 172 EPIKIAIIGRPNVGKSSLINALLGEERVIVS-DIAGTTRDSIDTPFER-DGQKYTLIDTAGIRRKGKVTEGVEKYSVIRT 249 (435)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCceEEEEEEEEEE-CCeeEEEEECCCCCCCcchhhHHHHHHHHHH
Confidence 3589999999999999999999987643222 2334444444344444 6778999999998764433222222221222
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++..+|++++|+|++++.+..+..++..+.+.. .|+++++||+|+...
T Consensus 250 ~~~~~~ad~~ilViD~~~~~~~~~~~i~~~~~~~~-----~~~ivv~NK~Dl~~~ 299 (435)
T PRK00093 250 LKAIERADVVLLVIDATEGITEQDLRIAGLALEAG-----RALVIVVNKWDLVDE 299 (435)
T ss_pred HHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHcC-----CcEEEEEECccCCCH
Confidence 23456779999999999888888877766655432 689999999999743
No 31
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.75 E-value=1.5e-17 Score=117.35 Aligned_cols=116 Identities=22% Similarity=0.300 Sum_probs=85.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc----------------ccCCCCcceeeEEEEEE--EeCCcEEEEEeCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKS----------------RASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLF 81 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~----------------~~~~~~~t~~~~~~~~~--~~~~~~~~~iDtpG~~ 81 (174)
.++|+++|+.++|||||+++|++...... .....+.|......... . ..+.+.++||||..
T Consensus 3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~-~~~~i~~iDtPG~~ 81 (188)
T PF00009_consen 3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNE-NNRKITLIDTPGHE 81 (188)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTE-SSEEEEEEEESSSH
T ss_pred EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccc-cccceeeccccccc
Confidence 47899999999999999999986542100 01112445555555554 4 78899999999986
Q ss_pred CCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 82 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+ +..........+|++++|+|+.+++...+.+.+..+.... .|+++++||+|+..
T Consensus 82 ~-----------f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~-----~p~ivvlNK~D~~~ 136 (188)
T PF00009_consen 82 D-----------FIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELG-----IPIIVVLNKMDLIE 136 (188)
T ss_dssp H-----------HHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT------SEEEEEETCTSSH
T ss_pred c-----------eeecccceecccccceeeeecccccccccccccccccccc-----cceEEeeeeccchh
Confidence 4 3333334466779999999998899998888888776653 57999999999983
No 32
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.75 E-value=3.6e-17 Score=125.90 Aligned_cols=122 Identities=27% Similarity=0.361 Sum_probs=97.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+++++|++++|||||+|+|++....-.. ..++.|++.-...+.. ++.++.++||.|+-++ .+.+.+.-.+..+.
T Consensus 218 ~kvvIiG~PNvGKSSLLNaL~~~d~AIVT-dI~GTTRDviee~i~i-~G~pv~l~DTAGiRet---~d~VE~iGIeRs~~ 292 (454)
T COG0486 218 LKVVIIGRPNVGKSSLLNALLGRDRAIVT-DIAGTTRDVIEEDINL-NGIPVRLVDTAGIRET---DDVVERIGIERAKK 292 (454)
T ss_pred ceEEEECCCCCcHHHHHHHHhcCCceEec-CCCCCccceEEEEEEE-CCEEEEEEecCCcccC---ccHHHHHHHHHHHH
Confidence 78999999999999999999998864332 4556677776667777 8999999999999964 46666777777777
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...++|.+++|+|++.+++..+...++ ..... +|+++|.||.|+..+
T Consensus 293 ~i~~ADlvL~v~D~~~~~~~~d~~~~~----~~~~~--~~~i~v~NK~DL~~~ 339 (454)
T COG0486 293 AIEEADLVLFVLDASQPLDKEDLALIE----LLPKK--KPIIVVLNKADLVSK 339 (454)
T ss_pred HHHhCCEEEEEEeCCCCCchhhHHHHH----hcccC--CCEEEEEechhcccc
Confidence 888999999999999677777777766 21222 689999999999876
No 33
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.74 E-value=9.2e-17 Score=114.63 Aligned_cols=126 Identities=25% Similarity=0.225 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+|+++|++|||||||+|.+++....... ....|.........+.....+.++||||+.+... ......+...+ .
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~--~~~~~~~~~~~-~ 116 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGADVYAED--QLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP--HQLVEAFRSTL-E 116 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcchhccCC--ccceeccceeEEEEecCCceEEEeCCCccccCCC--HHHHHHHHHHH-H
Confidence 79999999999999999999997632221 1223333333344443334899999999865321 22222233322 2
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|++++..... ..+.+.+....... .|+++|+||+|+...
T Consensus 117 ~~~~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~ 168 (204)
T cd01878 117 EVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDD 168 (204)
T ss_pred HHhcCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCCh
Confidence 4567899999999985544443 34455555442222 689999999999765
No 34
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.74 E-value=1.8e-16 Score=123.55 Aligned_cols=135 Identities=20% Similarity=0.172 Sum_probs=88.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
.|+++|.++||||||+|+|++..+- .+ ..+..|.......+.+.+...+.++|+||+.........+..++.+.+.
T Consensus 160 dVglVG~pNaGKSTLLn~Lt~ak~k-Ia-~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~~~~gLg~~fLrhie-- 235 (424)
T PRK12297 160 DVGLVGFPNVGKSTLLSVVSNAKPK-IA-NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGASEGVGLGHQFLRHIE-- 235 (424)
T ss_pred cEEEEcCCCCCHHHHHHHHHcCCCc-cc-cCCcceeceEEEEEEEeCCceEEEEECCCCcccccccchHHHHHHHHHh--
Confidence 6999999999999999999987632 21 2334455555555555336789999999998754444445555555544
Q ss_pred cCCceEEEEEEeCCCC--CCHH--HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624 102 KDGIHAVLVVFSVRSR--FSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 163 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~--~~~~--~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 163 (174)
+++++++|+|+++. -++. ...+.+.|..+......+|.++|+||+|+... ...++++.+
T Consensus 236 --r~~llI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~-~e~l~~l~~ 298 (424)
T PRK12297 236 --RTRVIVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA-EENLEEFKE 298 (424)
T ss_pred --hCCEEEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC-HHHHHHHHH
Confidence 45999999999732 1222 24455556554322234799999999997433 233444443
No 35
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.74 E-value=1.3e-16 Score=125.77 Aligned_cols=125 Identities=20% Similarity=0.185 Sum_probs=87.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+++++|.+|+|||||+|+|++....... ...+.|.........+ ++..+.++||||+.+.....+.+.........
T Consensus 172 ~~~v~ivG~~~~GKSsLin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~ 249 (429)
T TIGR03594 172 PIKIAIIGRPNVGKSTLVNALLGEERVIVS-DIAGTTRDSIDIPFER-NGKKYLLIDTAGIRRKGKVTEGVEKYSVLRTL 249 (429)
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCeeecC-CCCCceECcEeEEEEE-CCcEEEEEECCCccccccchhhHHHHHHHHHH
Confidence 478999999999999999999987633222 2234444443344444 66789999999998754333222222222223
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
.++..+|++++|+|++++.+..+..++..+.+. . .|+++|+||+|+.
T Consensus 250 ~~~~~ad~~ilV~D~~~~~~~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLRIAGLILEA---G--KALVIVVNKWDLV 296 (429)
T ss_pred HHHHhCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEECcccC
Confidence 356778999999999988888887776655443 1 6899999999998
No 36
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.74 E-value=7.8e-17 Score=111.04 Aligned_cols=118 Identities=19% Similarity=0.176 Sum_probs=76.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
+|+++|++|+|||||++++++....... ................ ....+.++||||... +......
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~~ 68 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGRFVSKY--LPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPE-----------YLEVRNE 68 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCeEEEEEEEECCccHH-----------HHHHHHH
Confidence 7899999999999999999987643221 1111111122222221 234678999999864 2233444
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh---hhcCcEEEEEeCcCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK---KIFDYMIVVFTGGDELE 152 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~---~~~~~~~iv~tk~D~~~ 152 (174)
.+.++|++++|+|.+++-+... ..++..+...... ....|+++|.||+|+..
T Consensus 69 ~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 69 FYKDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HhccCCEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 5678899999999985433222 4566666665432 12368999999999873
No 37
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.73 E-value=7.7e-17 Score=111.23 Aligned_cols=119 Identities=12% Similarity=0.142 Sum_probs=78.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|++|+|||||++++.+....... ....+.........+ ++ ..+.++||||... +...
T Consensus 3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~ 68 (165)
T cd01864 3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQ--GNTIGVDFTMKTLEI-EGKRVKLQIWDTAGQER-----------FRTI 68 (165)
T ss_pred eeEEEEECCCCCCHHHHHHHHhhCCCcccC--CCccceEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHH
Confidence 378999999999999999999875532221 111222233333444 33 3678999999653 3334
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
....+..+|++++++|.++.-+... ..++..+...... ..|+++|.||+|+...+
T Consensus 69 ~~~~~~~~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ivv~nK~Dl~~~~ 124 (165)
T cd01864 69 TQSYYRSANGAIIAYDITRRSSFESVPHWIEEVEKYGAS--NVVLLLIGNKCDLEEQR 124 (165)
T ss_pred HHHHhccCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECccccccc
Confidence 4455678899999999985433333 4666666554222 25899999999997553
No 38
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.73 E-value=2.3e-16 Score=119.89 Aligned_cols=127 Identities=20% Similarity=0.189 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
-.|+++|.++||||||+|+|++..+. .. ..+..|.......+.+.+...+.++||||+.+.......+...+.+.+.
T Consensus 158 adV~lvG~pnaGKSTLl~~lt~~~~~-va-~y~fTT~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~~gLg~~flrhie- 234 (329)
T TIGR02729 158 ADVGLVGLPNAGKSTLISAVSAAKPK-IA-DYPFTTLVPNLGVVRVDDGRSFVIADIPGLIEGASEGAGLGHRFLKHIE- 234 (329)
T ss_pred ccEEEEcCCCCCHHHHHHHHhcCCcc-cc-CCCCCccCCEEEEEEeCCceEEEEEeCCCcccCCcccccHHHHHHHHHH-
Confidence 35899999999999999999986531 11 2223444444445555233789999999998754443345555555543
Q ss_pred ccCCceEEEEEEeCCCC-C-CHH-H-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSR-F-SQE-E-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~-~-~~~-~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+++++++|+|+++. . +.. + ..+.+.+..+......+|+++|+||+|+...
T Consensus 235 ---rad~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 235 ---RTRVLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred ---hhCEEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 45999999999732 1 122 2 3444555544222234699999999999765
No 39
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.73 E-value=1.1e-16 Score=113.36 Aligned_cols=116 Identities=17% Similarity=0.252 Sum_probs=77.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc-ccccc-------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR-AFKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 86 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~-~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~ 86 (174)
++|+++|.+|+|||||++++++.. .+... ....+.+.........+ +...+.++||||..+
T Consensus 3 r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~-~~~~~~l~DtpG~~~---- 77 (194)
T cd01891 3 RNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTY-KDTKINIVDTPGHAD---- 77 (194)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEE-CCEEEEEEECCCcHH----
Confidence 689999999999999999998621 11111 01122333333344445 677899999999875
Q ss_pred hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+......++..+|++++|+|+++........++..+.. .. .|+++++||+|+...
T Consensus 78 -------~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~~~---~~--~p~iiv~NK~Dl~~~ 132 (194)
T cd01891 78 -------FGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKALE---LG--LKPIVVINKIDRPDA 132 (194)
T ss_pred -------HHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHHHH---cC--CCEEEEEECCCCCCC
Confidence 33344445677899999999986554544444443322 22 589999999999754
No 40
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.73 E-value=1.1e-16 Score=118.69 Aligned_cols=116 Identities=17% Similarity=0.228 Sum_probs=84.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcc--ccc--------------ccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRA--FKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~--~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.|+++|+.|+|||||+++|+.... ... .....+.|.........| ++..+.++||||..+
T Consensus 1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~d--- 76 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFW-KDHRINIIDTPGHVD--- 76 (270)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEE-CCEEEEEEECCCcHH---
Confidence 379999999999999999963211 000 112335667777777777 788899999999875
Q ss_pred ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
+...+..++..+|++++|+|+.++....+...++.+.... .|+++++||+|+.+.+
T Consensus 77 --------f~~~~~~~l~~aD~ailVVDa~~g~~~~t~~~~~~~~~~~-----~p~ivviNK~D~~~a~ 132 (270)
T cd01886 77 --------FTIEVERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYN-----VPRIAFVNKMDRTGAD 132 (270)
T ss_pred --------HHHHHHHHHHHcCEEEEEEECCCCCCHHHHHHHHHHHHcC-----CCEEEEEECCCCCCCC
Confidence 2223334555669999999998788888777776665432 5889999999997653
No 41
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.73 E-value=1.2e-16 Score=110.31 Aligned_cols=118 Identities=12% Similarity=0.073 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+++++|+.|+|||||++.+++........ ...+........... ....+.+|||||..+ +.....
T Consensus 2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~~~-----------~~~~~~ 68 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFV--STVGIDFKVKTVFRNDKRVKLQIWDTAGQER-----------YRTITT 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEECCEEEEEEEEECCChHH-----------HHHHHH
Confidence 589999999999999999999876422211 111112222222221 124688999999764 333345
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+..+|++++|+|.++.-+... ..|++.+...... ..|+++|.||+|+...
T Consensus 69 ~~~~~~~~~l~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piivv~nK~Dl~~~ 121 (165)
T cd01865 69 AYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVILVGNKCDMEDE 121 (165)
T ss_pred HHccCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCCEEEEEECcccCcc
Confidence 56788999999999974422222 4555555443222 2689999999999754
No 42
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.73 E-value=1.7e-16 Score=121.54 Aligned_cols=126 Identities=25% Similarity=0.206 Sum_probs=83.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+|+++|.+|+|||||+|+|++...... ...+.|.......+.+..+..+.++||||+.+. ..+.....+...+ .
T Consensus 190 ~~ValvG~~NvGKSSLln~L~~~~~~v~--~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~--l~~~lie~f~~tl-e 264 (351)
T TIGR03156 190 PTVALVGYTNAGKSTLFNALTGADVYAA--DQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD--LPHELVAAFRATL-E 264 (351)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCceeec--cCCccccCCEEEEEEeCCCceEEEEecCccccc--CCHHHHHHHHHHH-H
Confidence 7899999999999999999999763211 223444444445555545678999999999542 1233333343333 3
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|++++..... ..+.+.+.+. +. ...|+++|+||+|+...
T Consensus 265 ~~~~ADlil~VvD~s~~~~~~~~~~~~~~L~~l-~~-~~~piIlV~NK~Dl~~~ 316 (351)
T TIGR03156 265 EVREADLLLHVVDASDPDREEQIEAVEKVLEEL-GA-EDIPQLLVYNKIDLLDE 316 (351)
T ss_pred HHHhCCEEEEEEECCCCchHHHHHHHHHHHHHh-cc-CCCCEEEEEEeecCCCh
Confidence 4678899999999985554443 2334444443 21 12689999999999754
No 43
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.73 E-value=3.3e-16 Score=129.99 Aligned_cols=124 Identities=23% Similarity=0.232 Sum_probs=92.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|.+|+|||||+|.|++....... ...+.|.........+ .+..+.+|||||+.... +.+...+.....
T Consensus 275 ~~~V~IvG~~nvGKSSL~n~l~~~~~~iv~-~~pGvT~d~~~~~~~~-~~~~~~liDT~G~~~~~---~~~~~~~~~~~~ 349 (712)
T PRK09518 275 VGVVAIVGRPNVGKSTLVNRILGRREAVVE-DTPGVTRDRVSYDAEW-AGTDFKLVDTGGWEADV---EGIDSAIASQAQ 349 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCCceeec-CCCCeeEEEEEEEEEE-CCEEEEEEeCCCcCCCC---ccHHHHHHHHHH
Confidence 478999999999999999999987532222 2344555554445555 67789999999987422 234555666666
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.++..+|++++|+|++++++..+..+.+.++.. ..|+++|+||+|+...
T Consensus 350 ~~~~~aD~iL~VvDa~~~~~~~d~~i~~~Lr~~-----~~pvIlV~NK~D~~~~ 398 (712)
T PRK09518 350 IAVSLADAVVFVVDGQVGLTSTDERIVRMLRRA-----GKPVVLAVNKIDDQAS 398 (712)
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECcccccc
Confidence 677888999999999878888888887777642 2699999999998654
No 44
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.72 E-value=1.6e-16 Score=109.64 Aligned_cols=119 Identities=14% Similarity=0.054 Sum_probs=75.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccccc--CCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRA--SSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
+|+++|++|+|||||++.|++......+. .....|.........+ .+..+.++||||..+ +...+.
T Consensus 1 ~i~~vG~~~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 68 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEV-GNARLKFWDLGGQES-----------LRSLWD 68 (167)
T ss_pred CEEEEecCCCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 47899999999999999998754321111 1123344444445555 577899999999875 333444
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+.++|++++|+|.++.-.... ..++..+.+... ....|+++++||+|+...
T Consensus 69 ~~~~~~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 69 KYYAECHAIIYVIDSTDRERFEESKSALEKVLRNEA-LEGVPLLILANKQDLPDA 122 (167)
T ss_pred HHhCCCCEEEEEEECchHHHHHHHHHHHHHHHhChh-hcCCCEEEEEEccccccC
Confidence 56778899999999874322111 222222222111 123699999999998654
No 45
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.72 E-value=1.6e-16 Score=109.97 Aligned_cols=117 Identities=18% Similarity=0.150 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|++|+|||||++.+++........ ...........+.+ .+ ..+.++||||... +....
T Consensus 4 ~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~--~t~~~~~~~~~~~~-~~~~~~l~l~D~~g~~~-----------~~~~~ 69 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSFNPSFI--STIGIDFKIRTIEL-DGKKIKLQIWDTAGQER-----------FRTIT 69 (167)
T ss_pred eEEEEECCCCCCHHHHHHHHhhCcCCcccc--cCccceEEEEEEEE-CCEEEEEEEEeCCchHH-----------HHHHH
Confidence 789999999999999999999876322211 11112222223333 22 3578999999654 22233
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.+++.+... ..++..+...... ..|++++.||+|+.+.
T Consensus 70 ~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~iiv~nK~Dl~~~ 123 (167)
T cd01867 70 TAYYRGAMGIILVYDITDEKSFENIRNWMRNIEEHASE--DVERMLVGNKCDMEEK 123 (167)
T ss_pred HHHhCCCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEECcccccc
Confidence 445678899999999985433332 4455555543222 2589999999999754
No 46
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.72 E-value=2.6e-16 Score=108.73 Aligned_cols=124 Identities=23% Similarity=0.188 Sum_probs=75.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH-HHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE-FVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~-~~~~~~~~~~~ 99 (174)
++|+++|.+|+|||||+|++++.... .. .....|.........+ ++..+.++||||+.+...... ........
T Consensus 1 ~~i~~~G~~~~GKssli~~l~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~--- 74 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VA-PYPFTTKSLFVGHFDY-KYLRWQVIDTPGLLDRPLEERNTIEMQAIT--- 74 (168)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCCc-cC-CCCCcccceeEEEEcc-CceEEEEEECCCcCCccccCCchHHHHHHH---
Confidence 47899999999999999999997642 11 1122344344434434 567899999999865321111 11111111
Q ss_pred hccCCceEEEEEEeCCCCCC--HH-HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFS--QE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~--~~-~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......|++++|+|+++... .. ...+++.+.... ...|+++|+||+|+...
T Consensus 75 ~~~~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~---~~~pvilv~NK~Dl~~~ 128 (168)
T cd01897 75 ALAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLF---KNKPVIVVLNKIDLLTF 128 (168)
T ss_pred HHHhccCcEEEEEeCCcccccchHHHHHHHHHHHhhc---CcCCeEEEEEccccCch
Confidence 11123588999999975432 12 244555555432 13699999999999765
No 47
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.72 E-value=1.5e-16 Score=111.66 Aligned_cols=115 Identities=18% Similarity=0.169 Sum_probs=79.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccC--------------CCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 87 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~ 87 (174)
+|+++|.+|+|||||+|+|++......... ..+.+.........+ ....+.++||||+.+
T Consensus 1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~liDtpG~~~----- 74 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEW-PDRRVNFIDTPGHED----- 74 (189)
T ss_pred CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEee-CCEEEEEEeCCCcHH-----
Confidence 489999999999999999998764322100 112333333344444 466789999999764
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 88 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+...+..++..+|++++|+|..+.......+.+..+... ..|+++++||+|+..+
T Consensus 75 ------~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~~i~iv~nK~D~~~~ 129 (189)
T cd00881 75 ------FSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREG-----GLPIIVAINKIDRVGE 129 (189)
T ss_pred ------HHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHC-----CCCeEEEEECCCCcch
Confidence 222333344577999999999877766666666555441 2699999999999863
No 48
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.72 E-value=1.7e-17 Score=119.91 Aligned_cols=126 Identities=25% Similarity=0.235 Sum_probs=84.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+..++++|.+|+|||||+|+|.+...... ...+.++....+.........+.+|||||+.++.. ..++.+..+
T Consensus 38 ~pvnvLi~G~TG~GKSSliNALF~~~~~~v--~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~----~D~~~r~~~ 111 (296)
T COG3596 38 EPVNVLLMGATGAGKSSLINALFQGEVKEV--SKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKD----KDAEHRQLY 111 (296)
T ss_pred CceeEEEecCCCCcHHHHHHHHHhccCcee--eecccCCCchhhHHhhccccceEEecCCCcccchh----hhHHHHHHH
Confidence 347888999999999999999996442211 11111121111112222567899999999998543 333455555
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+++.|.+++++++.++.-..+.++++.+.-.. .+ +++++++|++|...+
T Consensus 112 ~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~-~~--~~~i~~VtQ~D~a~p 163 (296)
T COG3596 112 RDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILG-LD--KRVLFVVTQADRAEP 163 (296)
T ss_pred HHHhhhccEEEEeccCCCccccCCHHHHHHHHHhc-cC--ceeEEEEehhhhhcc
Confidence 55666779999999998776666666655555542 22 589999999999876
No 49
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.72 E-value=1.9e-16 Score=109.38 Aligned_cols=116 Identities=15% Similarity=0.153 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+|+++|+.|+|||||++.+.+....... ..|....+ ....... ...+.++||||... +...
T Consensus 3 ~ki~iiG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 67 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKKFMADC----PHTIGVEFGTRIIEVNGQKIKLQIWDTAGQER-----------FRAV 67 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCCC----CcccceeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHH
Confidence 58999999999999999999976532221 12222221 1222211 23578999999764 3334
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+.++|++++|+|.+++-+... ..+++.+...... ..|+++|.||+|+...
T Consensus 68 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 68 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIFLIGNKADLEAQ 122 (166)
T ss_pred HHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 4456778899999999985433332 4555544443222 2589999999998654
No 50
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.72 E-value=1.9e-16 Score=108.66 Aligned_cols=116 Identities=14% Similarity=0.127 Sum_probs=75.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
+|+++|++|+|||||++++++...... .....+.........+ .+ ..+.+|||||... +.....
T Consensus 2 ki~liG~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~l~~~D~~G~~~-----------~~~~~~ 67 (161)
T cd01861 2 KLVFLGDQSVGKTSIITRFMYDTFDNQ--YQATIGIDFLSKTMYL-EDKTVRLQLWDTAGQER-----------FRSLIP 67 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcc--CCCceeeeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 789999999999999999998764322 1222222222233333 22 3588999999654 333344
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+..+|++++|+|.+++-+... ..++..+....+. ..|+++++||+|+...
T Consensus 68 ~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iilv~nK~D~~~~ 120 (161)
T cd01861 68 SYIRDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGN--DVIIVLVGNKTDLSDK 120 (161)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCEEEEEEEChhcccc
Confidence 45678899999999985433333 3455544443222 2689999999999543
No 51
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.72 E-value=2.1e-16 Score=109.50 Aligned_cols=118 Identities=14% Similarity=0.118 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+|+++|++|+|||||++.+++...........+ ........... ....+.++||||... +.....
T Consensus 5 ~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 71 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMITIDGKQIKLQIWDTAGQES-----------FRSITR 71 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEECCCcHH-----------HHHHHH
Confidence 6899999999999999999998764322211111 21111222221 124678999999653 333344
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+|++++|+|.+++-+... ..|+..++..... ..|+++|.||.|+...
T Consensus 72 ~~~~~~d~il~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pvivv~nK~Dl~~~ 124 (168)
T cd01866 72 SYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSNS--NMTIMLIGNKCDLESR 124 (168)
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccccc
Confidence 55678899999999984332222 3444444443211 2589999999999743
No 52
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.72 E-value=3.5e-16 Score=123.05 Aligned_cols=122 Identities=20% Similarity=0.242 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+++++|++|+|||||+|+|++....... ...+.|.......+.+ ++..+.++||||+.+.. +...+........
T Consensus 204 ~kVvIvG~~nvGKSSLiN~L~~~~~aivs-~~pgtTrd~~~~~i~~-~g~~v~l~DTaG~~~~~---~~ie~~gi~~~~~ 278 (442)
T TIGR00450 204 FKLAIVGSPNVGKSSLLNALLKQDRAIVS-DIKGTTRDVVEGDFEL-NGILIKLLDTAGIREHA---DFVERLGIEKSFK 278 (442)
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCCcccC-CCCCcEEEEEEEEEEE-CCEEEEEeeCCCcccch---hHHHHHHHHHHHH
Confidence 78999999999999999999987532222 2344455544445555 67788999999997632 2222222223334
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|.+++.+..+. ++..+.. .. .|+++|+||+|+...
T Consensus 279 ~~~~aD~il~V~D~s~~~s~~~~-~l~~~~~---~~--~piIlV~NK~Dl~~~ 325 (442)
T TIGR00450 279 AIKQADLVIYVLDASQPLTKDDF-LIIDLNK---SK--KPFILVLNKIDLKIN 325 (442)
T ss_pred HHhhCCEEEEEEECCCCCChhHH-HHHHHhh---CC--CCEEEEEECccCCCc
Confidence 56788999999999866655544 4433322 12 689999999998654
No 53
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.72 E-value=1.5e-16 Score=109.26 Aligned_cols=117 Identities=16% Similarity=0.186 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
+++++|++|+|||||++.+++........ ...+............ ...+.++||||... +......
T Consensus 2 ki~v~G~~~vGKTsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~~~ 68 (161)
T cd04113 2 KFIIIGSSGTGKSCLLHRFVENKFKEDSQ--HTIGVEFGSKIIRVGGKRVKLQIWDTAGQER-----------FRSVTRS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCCC--CceeeeEEEEEEEECCEEEEEEEEECcchHH-----------HHHhHHH
Confidence 78999999999999999999876432211 1112222222222211 24678999999764 2333344
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|.++..+... ..++..++...... .|++++.||+|+...
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~ 120 (161)
T cd04113 69 YYRGAAGALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQ 120 (161)
T ss_pred HhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchh
Confidence 5678899999999985444333 45555555443223 589999999998753
No 54
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.72 E-value=3.8e-16 Score=123.32 Aligned_cols=126 Identities=17% Similarity=0.126 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
-.|+|+|.++||||||+|+|++..+. . ...+..|.......+.+ .+..+.++||||+.+.......+..++.+.+
T Consensus 160 adV~LVG~PNAGKSTLln~Ls~akpk-I-adypfTTl~P~lGvv~~-~~~~f~laDtPGliegas~g~gLg~~fLrhi-- 234 (500)
T PRK12296 160 ADVGLVGFPSAGKSSLISALSAAKPK-I-ADYPFTTLVPNLGVVQA-GDTRFTVADVPGLIPGASEGKGLGLDFLRHI-- 234 (500)
T ss_pred ceEEEEEcCCCCHHHHHHHHhcCCcc-c-cccCcccccceEEEEEE-CCeEEEEEECCCCccccchhhHHHHHHHHHH--
Confidence 45999999999999999999987532 2 12344555555555555 6678999999999875444444555555544
Q ss_pred ccCCceEEEEEEeCCCCC---CH-HH-HHHHHHHHHHHh---------hhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRF---SQ-EE-EAALHSLQTLFG---------KKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~---~~-~~-~~~l~~l~~~~~---------~~~~~~~~iv~tk~D~~~~ 153 (174)
.++|++++|+|+++.. ++ .+ ..+.+.|..+.. ....+|.++|+||+|+...
T Consensus 235 --eradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 235 --ERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred --HhcCEEEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 4459999999997311 11 11 233334444332 1123699999999999754
No 55
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.72 E-value=2.1e-16 Score=108.97 Aligned_cols=117 Identities=20% Similarity=0.171 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+++++|++|+|||||++.+++...... ..+..+.......... .+ ..+.++||||... +....
T Consensus 4 ~ki~vvG~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 69 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEFNLD--SKSTIGVEFATRSIQI-DGKTIKAQIWDTAGQER-----------YRAIT 69 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHHHH
Confidence 6899999999999999999998763211 1122222222222333 22 3578999999754 33333
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..++++++|+|.++..+... .+++..+.+.... ..|+++|.||+|+...
T Consensus 70 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~pi~vv~nK~Dl~~~ 123 (165)
T cd01868 70 SAYYRGAVGALLVYDITKKQTFENVERWLKELRDHADS--NIVIMLVGNKSDLRHL 123 (165)
T ss_pred HHHHCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 445677899999999984433333 3455555554322 2589999999998654
No 56
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.72 E-value=1.7e-16 Score=113.69 Aligned_cols=116 Identities=15% Similarity=0.149 Sum_probs=77.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeeEEEEEEEeCCcEE
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLKDGQVV 72 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~~~~~~ 72 (174)
+|+++|+.|+|||||+++|+....... .....+.|.........+ ++..+
T Consensus 1 ~i~iiG~~~~GKStL~~~Ll~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~ 79 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFST-PKRKF 79 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEec-CCceE
Confidence 589999999999999999975432111 001134455555555556 67789
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 73 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 73 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.++||||+.+ +...+...+..+|++++|+|++++....+......+... + .+++++|+||+|+..
T Consensus 80 ~liDTpG~~~-----------~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~-~---~~~iIvviNK~D~~~ 144 (208)
T cd04166 80 IIADTPGHEQ-----------YTRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLL-G---IRHVVVAVNKMDLVD 144 (208)
T ss_pred EEEECCcHHH-----------HHHHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHc-C---CCcEEEEEEchhccc
Confidence 9999999754 222222345678999999999877666665554444332 1 136788999999975
Q ss_pred C
Q 030624 153 D 153 (174)
Q Consensus 153 ~ 153 (174)
.
T Consensus 145 ~ 145 (208)
T cd04166 145 Y 145 (208)
T ss_pred C
Confidence 4
No 57
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.71 E-value=1.9e-16 Score=107.81 Aligned_cols=113 Identities=19% Similarity=0.182 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+|+++|++|+|||||+|.+.+....... ..|...... ..... ....+.++|+||... +....
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDGKFDENY----KSTIGVDFKSKTIEIDGKTVKLQIWDTAGQER-----------FRSIT 66 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhCcCCCcc----CCceeeeeEEEEEEECCEEEEEEEEecCChHH-----------HHHHH
Confidence 7899999999999999999987754331 122222222 22221 235678999999854 33345
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
..++..+|++++++|.+++-+... ..++..+...... ..|+++++||+|+.
T Consensus 67 ~~~~~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~ 118 (159)
T cd00154 67 PSYYRGAHGAILVYDITNRESFENLDKWLKELKEYAPE--NIPIILVGNKIDLE 118 (159)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEEccccc
Confidence 556677899999999984322222 3455555554322 26999999999996
No 58
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.71 E-value=1.6e-16 Score=109.40 Aligned_cols=115 Identities=19% Similarity=0.148 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
+|+++|.+|+|||||++.+++.............+. ........ ....+.+|||||... +......
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~~ 68 (161)
T cd04124 2 KIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTL--YKHNAKFEGKTILVDFWDTAGQER-----------FQTMHAS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEE--EEEEEEECCEEEEEEEEeCCCchh-----------hhhhhHH
Confidence 689999999999999999987653222111111111 11112221 223578999999765 3344455
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.+.++|++++|+|.+++.+..+ ..+++.+.+.. .. .|++++.||+|+..
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~--~p~ivv~nK~Dl~~ 118 (161)
T cd04124 69 YYHKAHACILVFDVTRKITYKNLSKWYEELREYR-PE--IPCIVVANKIDLDP 118 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CC--CcEEEEEECccCch
Confidence 6788899999999985544333 45666665532 12 59999999999853
No 59
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.71 E-value=1.9e-15 Score=107.03 Aligned_cols=125 Identities=18% Similarity=0.266 Sum_probs=77.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..++|+++|.+|+|||||+|+|++...........+.|....... .+..+.++||||+........ ....+....
T Consensus 23 ~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~l~l~DtpG~~~~~~~~~-~~~~~~~~~ 97 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFE----VNDKLRLVDLPGYGYAKVSKE-EKEKWQKLI 97 (196)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEe----cCCeEEEeCCCCCCCcCCCch-HHHHHHHHH
Confidence 448899999999999999999998642112112223333332221 246789999999875432221 111222222
Q ss_pred ---HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 ---GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ---~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......++++++++|.+.+....+....+.+... ..+++++.||+|+...
T Consensus 98 ~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~-----~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 98 EEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEY-----GIPVLIVLTKADKLKK 150 (196)
T ss_pred HHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHc-----CCcEEEEEECcccCCH
Confidence 1233456788888988766666665555555332 2578999999999764
No 60
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.71 E-value=4.4e-16 Score=123.90 Aligned_cols=126 Identities=21% Similarity=0.290 Sum_probs=85.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
...+++++|.+|+|||||+|+|++....... ...+.|.......+.+ ++..+.++||||+....... ...+.....
T Consensus 210 ~~~kI~iiG~~nvGKSSLin~l~~~~~~~~s-~~~gtT~d~~~~~~~~-~~~~~~l~DTaG~~~~~~~~--~~~e~~~~~ 285 (472)
T PRK03003 210 GPRRVALVGKPNVGKSSLLNKLAGEERSVVD-DVAGTTVDPVDSLIEL-GGKTWRFVDTAGLRRRVKQA--SGHEYYASL 285 (472)
T ss_pred cceEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCccCCcceEEEEE-CCEEEEEEECCCcccccccc--chHHHHHHH
Confidence 3489999999999999999999987632121 2334444443344445 66778999999986532211 111222222
Q ss_pred --HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 --GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 --~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++..+|++++|+|++++.+..+..++..+.+. . .|+++|+||+|+...
T Consensus 286 ~~~~~i~~ad~vilV~Da~~~~s~~~~~~~~~~~~~---~--~piIiV~NK~Dl~~~ 337 (472)
T PRK03003 286 RTHAAIEAAEVAVVLIDASEPISEQDQRVLSMVIEA---G--RALVLAFNKWDLVDE 337 (472)
T ss_pred HHHHHHhcCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECcccCCh
Confidence 2245788999999999988888777666555432 2 699999999999754
No 61
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.71 E-value=5.2e-16 Score=107.59 Aligned_cols=114 Identities=16% Similarity=0.151 Sum_probs=74.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|.+|+|||||++.+...... .. .+|.......... .+..+.++||||... +...+.
T Consensus 9 ~~kv~i~G~~~~GKTsli~~l~~~~~~-~~----~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 71 (168)
T cd04149 9 EMRILMLGLDAAGKTTILYKLKLGQSV-TT----IPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLWR 71 (168)
T ss_pred ccEEEEECcCCCCHHHHHHHHccCCCc-cc----cCCcccceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 379999999999999999999865432 11 1222222333334 567899999999865 334445
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~ 152 (174)
.++.++|++++|+|++++..... ..+.+.+..... ...|+++|.||+|+.+
T Consensus 72 ~~~~~a~~ii~v~D~t~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 72 HYYTGTQGLIFVVDSADRDRIDE--ARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred HHhccCCEEEEEEeCCchhhHHH--HHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 56788999999999985432222 222233332211 1258999999999864
No 62
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.71 E-value=3.6e-16 Score=107.90 Aligned_cols=118 Identities=17% Similarity=0.171 Sum_probs=74.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+++++|++|+|||||++.+++...... .....+........... ....+.++||||... +.....
T Consensus 3 ~ki~i~G~~~vGKSsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~~ 69 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIELDGKTIKLQIWDTAGQER-----------FRTITS 69 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCccceeEEEEEEEECCEEEEEEEEECCCcHh-----------HHHHHH
Confidence 6899999999999999999997653221 11222222222223331 123578999999664 333334
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+..+|++++|+|.++.-+... ..++..+...... ..|++++.||+|+...
T Consensus 70 ~~~~~~~~ii~v~d~~~~~s~~~l~~~~~~~~~~~~~--~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 70 SYYRGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTDK 122 (166)
T ss_pred HHhCcCCEEEEEEECcCHHHHHhHHHHHHHHHHhCCC--CCcEEEEEEChhcccc
Confidence 45678899999999985332222 3455555444212 2589999999998654
No 63
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.71 E-value=4.1e-16 Score=108.50 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=75.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
...+++++|++|+|||||++++.+.... . ...|.........+ +...+.++||||... +...+
T Consensus 13 ~~~kv~ivG~~~~GKTsL~~~l~~~~~~-~----~~~t~g~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~ 75 (173)
T cd04154 13 REMRILILGLDNAGKTTILKKLLGEDID-T----ISPTLGFQIKTLEY-EGYKLNIWDVGGQKT-----------LRPYW 75 (173)
T ss_pred CccEEEEECCCCCCHHHHHHHHccCCCC-C----cCCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 3478999999999999999999987431 1 11222223333444 567789999999764 23334
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.+++-.... ..++..+.... .....|+++|+||+|+...
T Consensus 76 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~Dl~~~ 130 (173)
T cd04154 76 RNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEE-RLAGATLLILANKQDLPGA 130 (173)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHhCh-hhcCCCEEEEEECcccccC
Confidence 455678899999999985422222 23333332211 1123699999999998754
No 64
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.71 E-value=5.1e-16 Score=106.52 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+|+++|++|+|||||++.+++...+... ..+|.........+ .+..+.++||||..+ +...+..+
T Consensus 1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~---~~~t~g~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~~~ 65 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQSQI---IVPTVGFNVESFEK-GNLSFTAFDMSGQGK-----------YRGLWEHY 65 (162)
T ss_pred CEEEECCCCCCHHHHHHHHcccCCCcce---ecCccccceEEEEE-CCEEEEEEECCCCHh-----------hHHHHHHH
Confidence 4789999999999999999986432121 11222222223333 567889999999875 33344455
Q ss_pred cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHh-hhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~~iv~tk~D~~~~ 153 (174)
+..+|++++|+|.+++.+... ..+++.+.+... .....|+++++||+|+...
T Consensus 66 ~~~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 66 YKNIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HccCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 678899999999985443222 334443333110 0123699999999999754
No 65
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=99.70 E-value=8e-16 Score=114.39 Aligned_cols=129 Identities=20% Similarity=0.271 Sum_probs=82.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEEEEe-CC--cEEEEEeCCCCCCCCCChHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGSEF 89 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~~--~~~~~iDtpG~~~~~~~~~~ 89 (174)
-..+|+++|++|+|||||+|+|++......... ....|........... ++ ..+.++||||+.++......
T Consensus 3 ~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~~ 82 (276)
T cd01850 3 FQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred cEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchhh
Confidence 347899999999999999999998775433211 1223332222222221 23 36899999999986532221
Q ss_pred H-------HHHHHHHH-------H---hccCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 90 V-------GKEIVKCI-------G---MAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 90 ~-------~~~~~~~~-------~---~~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
+ ..++..++ + ..-.++|+++|+++.+. ++...+.+.++.+... .++++|+||+|++
T Consensus 83 ~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~~------v~vi~VinK~D~l 156 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKR------VNIIPVIAKADTL 156 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhcc------CCEEEEEECCCcC
Confidence 1 11111111 1 11236899999998863 6777777777777652 5899999999997
Q ss_pred CC
Q 030624 152 ED 153 (174)
Q Consensus 152 ~~ 153 (174)
..
T Consensus 157 ~~ 158 (276)
T cd01850 157 TP 158 (276)
T ss_pred CH
Confidence 64
No 66
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.70 E-value=4.1e-16 Score=107.17 Aligned_cols=117 Identities=21% Similarity=0.154 Sum_probs=74.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+++++|++|+|||||+|++++...........+.+.. .....+. ....+.+||+||..+ +.....
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~--~~~v~~~~~~~~~~i~D~~G~~~-----------~~~~~~ 68 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFL--TQTVNLDDTTVKFEIWDTAGQER-----------YRSLAP 68 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEE--EEEEEECCEEEEEEEEeCCchHH-----------HHHHHH
Confidence 58999999999999999999987743311111111111 1222221 234678999999653 233334
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
..+..+|++++|+|+++.-+... ..++..+...... ..|++++.||+|+..
T Consensus 69 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~iivv~nK~D~~~ 120 (163)
T cd01860 69 MYYRGAAAAIVVYDITSEESFEKAKSWVKELQRNASP--NIIIALVGNKADLES 120 (163)
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 45677899999999984322222 4555555554322 258999999999874
No 67
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.70 E-value=7.6e-16 Score=107.30 Aligned_cols=116 Identities=16% Similarity=0.093 Sum_probs=75.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|++|+|||||++.+++...... .+|.........+ ++..+.++||||... +...+.
T Consensus 15 ~~kv~~~G~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~ 77 (174)
T cd04153 15 EYKVIIVGLDNAGKTTILYQFLLGEVVHT-----SPTIGSNVEEIVY-KNIRFLMWDIGGQES-----------LRSSWN 77 (174)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCCCc-----CCccccceEEEEE-CCeEEEEEECCCCHH-----------HHHHHH
Confidence 47899999999999999999987653211 2233333344445 567899999999865 334444
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+.++|++++|+|.++.-.... ...+..+.+... ....|+++++||+|+...
T Consensus 78 ~~~~~~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~-~~~~p~viv~NK~Dl~~~ 131 (174)
T cd04153 78 TYYTNTDAVILVIDSTDRERLPLTKEELYKMLAHED-LRKAVLLVLANKQDLKGA 131 (174)
T ss_pred HHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECCCCCCC
Confidence 55678899999999984322211 222222221111 112699999999998653
No 68
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.70 E-value=8.4e-16 Score=105.59 Aligned_cols=113 Identities=15% Similarity=0.097 Sum_probs=73.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+|+++|..|+|||||++.+...... . ..+|.........+ ....+.++||||..+ +...+..+
T Consensus 2 kv~~~G~~~~GKTsli~~l~~~~~~-~----~~pt~g~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~~~ 64 (159)
T cd04150 2 RILMVGLDAAGKTTILYKLKLGEIV-T----TIPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (159)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc-c----cCCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHH
Confidence 7899999999999999999654432 1 11222222333444 567899999999865 44445556
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 153 (174)
+.++|++++|+|.++..+... ..+.+.+..... ...|++++.||.|+.+.
T Consensus 65 ~~~ad~~i~v~D~~~~~s~~~--~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 116 (159)
T cd04150 65 FQNTQGLIFVVDSNDRERIGE--AREELQRMLNEDELRDAVLLVFANKQDLPNA 116 (159)
T ss_pred hcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhcHHhcCCCEEEEEECCCCCCC
Confidence 788999999999984322222 122222222111 12689999999998643
No 69
>PRK11058 GTPase HflX; Provisional
Probab=99.70 E-value=7.6e-16 Score=120.54 Aligned_cols=126 Identities=23% Similarity=0.144 Sum_probs=82.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
++|+++|.+|||||||+|+|++.... . ....+.|.........+.....+.++||||+.+. ..+.....+... ..
T Consensus 198 p~ValVG~~NaGKSSLlN~Lt~~~~~-v-~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~--lp~~lve~f~~t-l~ 272 (426)
T PRK11058 198 PTVSLVGYTNAGKSTLFNRITEARVY-A-ADQLFATLDPTLRRIDVADVGETVLADTVGFIRH--LPHDLVAAFKAT-LQ 272 (426)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCcee-e-ccCCCCCcCCceEEEEeCCCCeEEEEecCccccc--CCHHHHHHHHHH-HH
Confidence 57999999999999999999987643 1 1223445544444555533347899999999652 123333334433 33
Q ss_pred ccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+|++++|+|++++...... .+.+.+.+..... .|+++|+||+|+...
T Consensus 273 ~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~ 324 (426)
T PRK11058 273 ETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDD 324 (426)
T ss_pred HhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCc
Confidence 56789999999999865443433 2334444432222 689999999999754
No 70
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.70 E-value=8e-16 Score=106.52 Aligned_cols=114 Identities=17% Similarity=0.115 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+|+++|++|||||||++.+.+... .. ..+|.......... .+..+.++|+||... +...+...
T Consensus 1 ~i~~~G~~~~GKTsl~~~l~~~~~--~~---~~~t~g~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIP--KK---VAPTVGFTPTKLRL-DKYEVCIFDLGGGAN-----------FRGIWVNY 63 (167)
T ss_pred CEEEECCCCCCHHHHHHHHhCCCC--cc---ccCcccceEEEEEE-CCEEEEEEECCCcHH-----------HHHHHHHH
Confidence 478999999999999999998621 11 11222222334444 567889999999754 34444556
Q ss_pred cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+..+|++++|+|.++.-.... ..++..+.... .....|+++|.||.|+...
T Consensus 64 ~~~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 64 YAEAHGLVFVVDSSDDDRVQEVKEILRELLQHP-RVSGKPILVLANKQDKKNA 115 (167)
T ss_pred HcCCCEEEEEEECCchhHHHHHHHHHHHHHcCc-cccCCcEEEEEeCCCCcCC
Confidence 788899999999985432222 33444333321 1123699999999998765
No 71
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.70 E-value=4.9e-16 Score=107.24 Aligned_cols=119 Identities=21% Similarity=0.176 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+|+++|.+|+|||||++.+++............ ........... ....+.++||||..+. ......
T Consensus 2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~~-~~~~l~i~Dt~G~~~~-----------~~~~~~ 68 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIE-DTYRQVISCSK-NICTLQITDTTGSHQF-----------PAMQRL 68 (165)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcch-heEEEEEEECC-EEEEEEEEECCCCCcc-----------hHHHHH
Confidence 6899999999999999999998764222111111 11111111111 2345789999998762 222233
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhh-hcCcEEEEEeCcCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDELE 152 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~~iv~tk~D~~~ 152 (174)
.+..+|++++|+|.++.-+... ..+++.+.+..+.. ...|+++|.||+|+..
T Consensus 69 ~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 69 SISKGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 4567899999999985544433 55666666654322 2369999999999965
No 72
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.70 E-value=3.8e-16 Score=107.30 Aligned_cols=117 Identities=19% Similarity=0.213 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|++|+|||||++.+++...... .....+.......... .+ ..+.++|+||... +....
T Consensus 1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~-----------~~~~~ 66 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKFSEQ--YKSTIGVDFKTKTIEV-DGKRVKLQIWDTAGQER-----------FRSIT 66 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCC--CCCceeeEEEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHH
Confidence 3789999999999999999998764211 1122222222233333 23 4678999999653 22334
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.++..+... ..|+..+...... ..|+++++||+|+...
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~--~~pivvv~nK~D~~~~ 120 (164)
T smart00175 67 SSYYRGAVGALLVYDITNRESFENLKNWLKELREYADP--NVVIMLVGNKSDLEDQ 120 (164)
T ss_pred HHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEEchhcccc
Confidence 445677899999999985433333 3355544444322 2699999999998753
No 73
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.70 E-value=7.4e-16 Score=106.87 Aligned_cols=114 Identities=16% Similarity=0.067 Sum_probs=74.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+++++|..|+|||||++++.+.... . ..+|.........+ .+..+.++||||... ....+...
T Consensus 1 ~vvlvG~~~~GKTsl~~~l~~~~~~-~----~~~T~~~~~~~~~~-~~~~i~l~Dt~G~~~-----------~~~~~~~~ 63 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFM-Q----PIPTIGFNVETVEY-KNLKFTIWDVGGKHK-----------LRPLWKHY 63 (169)
T ss_pred CEEEECCCCCCHHHHHHHHhcCCCC-C----cCCcCceeEEEEEE-CCEEEEEEECCCChh-----------cchHHHHH
Confidence 5789999999999999999986421 1 22333334444445 667899999999875 23334445
Q ss_pred cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+..+|++++|+|.+++-...+ ..++..+.+... ....|++++.||+|+.+.
T Consensus 64 ~~~ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 115 (169)
T cd04158 64 YLNTQAVVFVVDSSHRDRVSEAHSELAKLLTEKE-LRDALLLIFANKQDVAGA 115 (169)
T ss_pred hccCCEEEEEEeCCcHHHHHHHHHHHHHHhcChh-hCCCCEEEEEeCcCcccC
Confidence 677899999999985422222 333333332111 112589999999998643
No 74
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.70 E-value=5.4e-16 Score=112.99 Aligned_cols=116 Identities=19% Similarity=0.254 Sum_probs=80.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccc--ccc--------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAF--KSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~--~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.|+++|+.|+|||||+++|+..... ..| ....+.+.........+ ++..+.++||||+.++
T Consensus 1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~-~~~~i~liDTPG~~~f-- 77 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQW-EDTKVNLIDTPGHMDF-- 77 (237)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEE-CCEEEEEEeCCCccch--
Confidence 3789999999999999999754211 001 01123344445555666 7788999999999862
Q ss_pred ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
...+..++..+|++++|+|+.++.......+++.+... . .|+++++||+|+...+
T Consensus 78 ---------~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~~~~~~~~---~--~P~iivvNK~D~~~a~ 132 (237)
T cd04168 78 ---------IAEVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKL---N--IPTIIFVNKIDRAGAD 132 (237)
T ss_pred ---------HHHHHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEECccccCCC
Confidence 22223344566999999999878777667776666543 1 5889999999998653
No 75
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.70 E-value=1.3e-15 Score=106.33 Aligned_cols=116 Identities=15% Similarity=0.088 Sum_probs=75.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|..|+|||||++.+...... . ..+|.........+ ++..+.++||||... +...+.
T Consensus 13 ~~ki~l~G~~~~GKTsL~~~~~~~~~~-~----~~~t~~~~~~~~~~-~~~~l~l~D~~G~~~-----------~~~~~~ 75 (175)
T smart00177 13 EMRILMVGLDAAGKTTILYKLKLGESV-T----TIPTIGFNVETVTY-KNISFTVWDVGGQDK-----------IRPLWR 75 (175)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCCC-C----cCCccccceEEEEE-CCEEEEEEECCCChh-----------hHHHHH
Confidence 379999999999999999999644321 1 12233333334444 567899999999875 444455
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.++.++|++++|+|.+++-+... .+++..+..... ....|++++.||.|+.+.
T Consensus 76 ~~~~~ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~ 129 (175)
T smart00177 76 HYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNEDE-LRDAVILVFANKQDLPDA 129 (175)
T ss_pred HHhCCCCEEEEEEECCCHHHHHHHHHHHHHHhhCHh-hcCCcEEEEEeCcCcccC
Confidence 56788999999999985422222 233322221100 112589999999998653
No 76
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.70 E-value=1.2e-15 Score=105.87 Aligned_cols=117 Identities=17% Similarity=0.095 Sum_probs=74.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+..+++++|++|+|||||++++.+...... ..|.........+ .+..+.++|+||... +...+
T Consensus 13 ~~~~v~i~G~~g~GKStLl~~l~~~~~~~~-----~~t~g~~~~~i~~-~~~~~~~~D~~G~~~-----------~~~~~ 75 (173)
T cd04155 13 EEPRILILGLDNAGKTTILKQLASEDISHI-----TPTQGFNIKTVQS-DGFKLNVWDIGGQRA-----------IRPYW 75 (173)
T ss_pred CccEEEEEccCCCCHHHHHHHHhcCCCccc-----CCCCCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHH
Confidence 358999999999999999999998753211 1222223334444 567789999999754 33334
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.++.-.... ..++..+..... ....|+++++||+|+.+.
T Consensus 76 ~~~~~~~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~ 130 (173)
T cd04155 76 RNYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEK-LAGVPVLVFANKQDLATA 130 (173)
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECCCCccC
Confidence 445678899999999984321111 222222222111 122689999999998764
No 77
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.69 E-value=6e-16 Score=106.06 Aligned_cols=113 Identities=13% Similarity=0.039 Sum_probs=73.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+++++|++|+|||||++.+........ .+|.........+ .+..+.++||||..+ +...+..+
T Consensus 1 kv~lvG~~~~GKTsl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 63 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEVVTT-----IPTIGFNVETVTY-KNLKFQVWDLGGQTS-----------IRPYWRCY 63 (158)
T ss_pred CEEEECCCCCCHHHHHHHHccCCCcCc-----CCccCcCeEEEEE-CCEEEEEEECCCCHH-----------HHHHHHHH
Confidence 579999999999999999976553211 1232233334444 567899999999875 33444556
Q ss_pred cCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+..+|++++|+|+++..... ...+...+++.. ....|+++++||+|+.+.
T Consensus 64 ~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~~piiiv~nK~Dl~~~ 115 (158)
T cd04151 64 YSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEE--LKGAVLLVFANKQDMPGA 115 (158)
T ss_pred hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchh--hcCCcEEEEEeCCCCCCC
Confidence 67899999999998432221 122222222211 123699999999998754
No 78
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=99.69 E-value=7.1e-16 Score=109.57 Aligned_cols=120 Identities=20% Similarity=0.208 Sum_probs=77.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcc-eeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVT-STCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t-~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+|+++|++|+|||||+|+|++...+..+....+.. .......+.......+.++||||+.+.....+ ++.+.
T Consensus 2 ~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~~~----~~l~~-- 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFPPD----DYLEE-- 75 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCCHH----HHHHH--
Confidence 579999999999999999999976543332222210 01111111111234689999999986433322 22222
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+.++|+++++.+ ++++..+..+++.+++.. .++++|+||+|+..+
T Consensus 76 ~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~-----~~~ilV~nK~D~~~~ 122 (197)
T cd04104 76 MKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMG-----KKFYFVRTKVDRDLS 122 (197)
T ss_pred hCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhC-----CCEEEEEecccchhh
Confidence 23567788888743 378888888888887752 589999999999643
No 79
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.69 E-value=5.4e-16 Score=107.74 Aligned_cols=122 Identities=19% Similarity=0.136 Sum_probs=73.8
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccC
Q 030624 25 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKD 103 (174)
Q Consensus 25 i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~ 103 (174)
++|++|||||||+|+|++.... .+ .....|.........+ + ...+.++||||+.+.....+.....+.. .+.
T Consensus 1 iiG~~~~GKStll~~l~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~~i~DtpG~~~~~~~~~~~~~~~~~----~~~ 73 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAKPK-VA-NYPFTTLEPNLGVVEV-PDGARIQVADIPGLIEGASEGRGLGNQFLA----HIR 73 (176)
T ss_pred CCCCCCCcHHHHHHHHhcCCcc-cc-CCCceeecCcceEEEc-CCCCeEEEEeccccchhhhcCCCccHHHHH----HHh
Confidence 5899999999999999997641 11 1223333333334444 4 7789999999986532222222222222 344
Q ss_pred CceEEEEEEeCCCCC-----CHH-H-HHHHHHHHHHHhh-----hhcCcEEEEEeCcCCCCC
Q 030624 104 GIHAVLVVFSVRSRF-----SQE-E-EAALHSLQTLFGK-----KIFDYMIVVFTGGDELED 153 (174)
Q Consensus 104 ~~~~il~v~~~~~~~-----~~~-~-~~~l~~l~~~~~~-----~~~~~~~iv~tk~D~~~~ 153 (174)
.+|++++|+|+.+.. ... + ..+...+...... ....|+++|+||+|+...
T Consensus 74 ~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~ 135 (176)
T cd01881 74 RADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDA 135 (176)
T ss_pred ccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCch
Confidence 579999999998442 222 2 2233333322111 123699999999999765
No 80
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.69 E-value=9.2e-16 Score=107.86 Aligned_cols=118 Identities=10% Similarity=0.037 Sum_probs=74.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+..+++++|.+|+|||||++.+.+.... .. .+|.......... .+..+.++|+||... ....
T Consensus 15 ~~~~~i~ivG~~~~GKTsli~~l~~~~~~-~~----~~t~~~~~~~~~~-~~~~~~~~D~~G~~~-----------~~~~ 77 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLA-QH----QPTQHPTSEELAI-GNIKFTTFDLGGHQQ-----------ARRL 77 (184)
T ss_pred cccCEEEEECCCCCCHHHHHHHHhcCCCc-cc----CCccccceEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 34489999999999999999999986431 11 1222222233333 567889999999864 3334
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+..++..+|++++|+|+++.-.... ...+..+.+.. .....|+++++||+|+...
T Consensus 78 ~~~~~~~ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~-~~~~~piliv~NK~Dl~~~ 133 (184)
T smart00178 78 WKDYFPEVNGIVYLVDAYDKERFAESKRELDALLSDE-ELATVPFLILGNKIDAPYA 133 (184)
T ss_pred HHHHhCCCCEEEEEEECCcHHHHHHHHHHHHHHHcCh-hhcCCCEEEEEeCccccCC
Confidence 4456778999999999984311111 22222222211 1123699999999998643
No 81
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.69 E-value=1.2e-15 Score=104.51 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=72.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+|+++|++|+|||||++.+.+...... .+|............+..+.++||||... +...+...
T Consensus 1 ~i~i~G~~~~GKTsl~~~~~~~~~~~~-----~~t~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~~~~ 64 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTT-----IPTVGFNVEMLQLEKHLSLTVWDVGGQEK-----------MRTVWKCY 64 (160)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCcccc-----cCccCcceEEEEeCCceEEEEEECCCCHh-----------HHHHHHHH
Confidence 479999999999999999998764321 12222223333332456799999999764 33334445
Q ss_pred cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+..+|++++|+|.++..+... ..++..+..... ....|+++|+||+|+..
T Consensus 65 ~~~~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 65 LENTDGLVYVVDSSDEARLDESQKELKHILKNEH-IKGVPVVLLANKQDLPG 115 (160)
T ss_pred hccCCEEEEEEECCcHHHHHHHHHHHHHHHhchh-hcCCCEEEEEECccccc
Confidence 677899999999985432222 222222222111 12369999999999864
No 82
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.69 E-value=7.2e-16 Score=106.96 Aligned_cols=119 Identities=15% Similarity=0.094 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHH-HHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIV-KCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~-~~~ 98 (174)
.+|+++|++|+|||||++++++....... ..............+.. ...+.+|||||..+ +. ...
T Consensus 3 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 69 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRFPERT--EATIGVDFRERTVEIDGERIKVQLWDTAGQER-----------FRKSMV 69 (170)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCcc--ccceeEEEEEEEEEECCeEEEEEEEeCCChHH-----------HHHhhH
Confidence 68999999999999999999876532221 11111112222233311 24688999999764 22 123
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.+++-+... ..|++.+...... ...|+++|.||+|+...
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 70 QHYYRNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLP-NEVPRILVGNKCDLREQ 124 (170)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcCC-CCCCEEEEEECccchhh
Confidence 445678899999999985444433 4555555544221 23699999999998654
No 83
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.69 E-value=8e-16 Score=105.36 Aligned_cols=117 Identities=14% Similarity=0.098 Sum_probs=74.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
+++++|+.|+|||||+|++++....... ....+.........+. ....+.++|+||... +......
T Consensus 2 ki~i~G~~~~GKStli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~-----------~~~~~~~ 68 (162)
T cd04123 2 KVVLLGEGRVGKTSLVLRYVENKFNEKH--ESTTQASFFQKTVNIGGKRIDLAIWDTAGQER-----------YHALGPI 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCc--CCccceeEEEEEEEECCEEEEEEEEECCchHH-----------HHHhhHH
Confidence 7899999999999999999987643221 1111111222222221 123688999999653 2223334
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|.+++-.... ..+++.+...... ..|+++++||+|+...
T Consensus 69 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~nK~D~~~~ 120 (162)
T cd04123 69 YYRDADGAILVYDITDADSFQKVKKWIKELKQMRGN--NISLVIVGNKIDLERQ 120 (162)
T ss_pred HhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 4567899999999975433332 3455555555433 3689999999998753
No 84
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.69 E-value=1.1e-15 Score=108.86 Aligned_cols=115 Identities=13% Similarity=0.037 Sum_probs=75.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE--EEEEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
+|+++|++|+|||||++.+++...... ...|.... ...+.+. ....+.+|||||... +...
T Consensus 2 KivivG~~~vGKTsli~~l~~~~~~~~----~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~~~-----------~~~~ 66 (201)
T cd04107 2 KVLVIGDLGVGKTSIIKRYVHGIFSQH----YKATIGVDFALKVIEWDPNTVVRLQLWDIAGQER-----------FGGM 66 (201)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeEEEEEEEEEECCCCEEEEEEEECCCchh-----------hhhh
Confidence 789999999999999999998653211 12232222 2233332 234578999999864 3334
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDEL 151 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~ 151 (174)
....+..+|++++|+|.+++-+... ..|...+...... ....|+++|.||+|+.
T Consensus 67 ~~~~~~~a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~ 123 (201)
T cd04107 67 TRVYYRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLK 123 (201)
T ss_pred HHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcc
Confidence 4556788899999999985433333 3455555543211 1235899999999996
No 85
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.69 E-value=1.3e-15 Score=104.66 Aligned_cols=117 Identities=24% Similarity=0.209 Sum_probs=73.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee-eEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
..+++++|++|+|||||++++++....... ..|.. ........ .+ ..+.++||||..+. ..
T Consensus 2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~ 65 (164)
T cd04145 2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDY----DPTIEDSYTKQCEI-DGQWAILDILDTAGQEEF-----------SA 65 (164)
T ss_pred ceEEEEECCCCCcHHHHHHHHHhCCCCccc----CCCccceEEEEEEE-CCEEEEEEEEECCCCcch-----------hH
Confidence 368999999999999999999876532221 11111 11112222 33 35788999998752 22
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|.++.-+... ..+...+.+... ....|+++++||+|+...
T Consensus 66 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 66 MREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVKD-RDEFPMILVGNKADLEHQ 122 (164)
T ss_pred HHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCCEEEEeeCcccccc
Confidence 23334566799999999985433222 344444444322 123699999999998654
No 86
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.69 E-value=8.1e-16 Score=107.37 Aligned_cols=117 Identities=18% Similarity=0.220 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccc------cccc-------CCCCcceeeEEEEEEE----eCCcEEEEEeCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAF------KSRA-------SSSGVTSTCEMQRTVL----KDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~------~~~~-------~~~~~t~~~~~~~~~~----~~~~~~~~iDtpG~~~~ 83 (174)
+.|+++|++|+|||||++++++.... .... ...+.+.........+ ..+..+.+|||||+.+
T Consensus 1 rni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~- 79 (179)
T cd01890 1 RNFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVD- 79 (179)
T ss_pred CcEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCChh-
Confidence 46899999999999999999874210 0000 0012222222222222 1245678999999976
Q ss_pred CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+...+..++..+|++++|+|++++.+..+...+..+.. .. .|+++|+||+|+...
T Consensus 80 ----------~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~~~---~~--~~iiiv~NK~Dl~~~ 134 (179)
T cd01890 80 ----------FSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLALE---NN--LEIIPVINKIDLPSA 134 (179)
T ss_pred ----------hHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHHHH---cC--CCEEEEEECCCCCcC
Confidence 22233344567899999999986666555444333222 22 589999999998643
No 87
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.69 E-value=1.4e-15 Score=112.54 Aligned_cols=117 Identities=17% Similarity=0.227 Sum_probs=78.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc--cccccC------------------CCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRA--FKSRAS------------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~--~~~~~~------------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~ 80 (174)
+.|+++|+.|+|||||+++|+.... ...|.. ..+.+.......+.+ ++..+.++||||.
T Consensus 3 Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~-~~~~i~liDTPG~ 81 (267)
T cd04169 3 RTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEY-RDCVINLLDTPGH 81 (267)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEee-CCEEEEEEECCCc
Confidence 7899999999999999999974321 111100 112334444556666 7788999999998
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
.++. .+.. ..+..+|++++|+|++++.......+++..... ..|+++++||+|....+
T Consensus 82 ~df~-------~~~~----~~l~~aD~~IlVvda~~g~~~~~~~i~~~~~~~-----~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 82 EDFS-------EDTY----RTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLR-----GIPIITFINKLDREGRD 139 (267)
T ss_pred hHHH-------HHHH----HHHHHCCEEEEEEECCCCccHHHHHHHHHHHhc-----CCCEEEEEECCccCCCC
Confidence 7521 1222 234466999999999877766665555443332 26899999999987654
No 88
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.68 E-value=8.1e-16 Score=105.55 Aligned_cols=118 Identities=18% Similarity=0.146 Sum_probs=74.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
+++++|++|+|||||++++++........ ...+.........+. ....+.++||||... +......
T Consensus 2 ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~D~~g~~~-----------~~~~~~~ 68 (161)
T cd01863 2 KILLIGDSGVGKSSLLLRFTDDTFDPDLA--ATIGVDFKVKTLTVDGKKVKLAIWDTAGQER-----------FRTLTSS 68 (161)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCcccC--CcccceEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHH
Confidence 78999999999999999999876432211 112222222222231 224689999999764 2333344
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|.++.-+... ..+++.+...... ...|++++.||+|+...
T Consensus 69 ~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~~~~iv~nK~D~~~~ 121 (161)
T cd01863 69 YYRGAQGVILVYDVTRRDTFTNLETWLNELETYSTN-NDIVKMLVGNKIDKENR 121 (161)
T ss_pred HhCCCCEEEEEEECCCHHHHHhHHHHHHHHHHhCCC-CCCcEEEEEECCccccc
Confidence 5678899999999985433333 3455555554322 23689999999999733
No 89
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.68 E-value=9.5e-16 Score=105.25 Aligned_cols=116 Identities=22% Similarity=0.160 Sum_probs=73.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+|+++|.+|+|||||++.+++...... ...............+. ....+.++||||..+ +....
T Consensus 2 kv~~vG~~~~GKTsl~~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G~~~-----------~~~~~ 68 (162)
T cd04106 2 KVIVVGNGNVGKSSMIQRFVKGIFTKD--YKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEE-----------FDAIT 68 (162)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC--CCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCchHH-----------HHHhH
Confidence 689999999999999999998653211 11111122112222231 234689999999654 33334
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++..+|++++|++.+++-+... ..++..+.... ...|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~v~v~d~~~~~s~~~l~~~~~~~~~~~---~~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 69 KAYYRGAQACILVFSTTDRESFEAIESWKEKVEAEC---GDIPMVLVQTKIDLLDQ 121 (162)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhcccc
Confidence 456678899999999984332222 34444444322 23599999999998754
No 90
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.68 E-value=5.5e-16 Score=110.63 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=76.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeeEEEEEEEe--------------------------------C
Q 030624 22 TVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEMQRTVLK--------------------------------D 68 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~--------------------------------~ 68 (174)
+++++|++|+|||||+++|++.. ....+....+.+..+.+....+. .
T Consensus 2 ~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (203)
T cd01888 2 NIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKL 81 (203)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCcccc
Confidence 68999999999999999998873 22233233334444443333321 1
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-CCHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 69 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
...+.+|||||..+ +...+......+|++++|+|++++ ....+...+..+... + .+|+++++||
T Consensus 82 ~~~i~~iDtPG~~~-----------~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~-~---~~~iiivvNK 146 (203)
T cd01888 82 VRHVSFVDCPGHEI-----------LMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIM-G---LKHIIIVQNK 146 (203)
T ss_pred ccEEEEEECCChHH-----------HHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHc-C---CCcEEEEEEc
Confidence 16789999999643 444444455677999999999853 344445555444332 1 1478999999
Q ss_pred cCCCCC
Q 030624 148 GDELED 153 (174)
Q Consensus 148 ~D~~~~ 153 (174)
+|+...
T Consensus 147 ~Dl~~~ 152 (203)
T cd01888 147 IDLVKE 152 (203)
T ss_pred hhccCH
Confidence 999764
No 91
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.68 E-value=1.1e-15 Score=108.91 Aligned_cols=116 Identities=15% Similarity=0.219 Sum_probs=78.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.|+++|..|+|||||++.+...... .. .....+.......+.+ ++ ..+.+|||+|... +...+.
T Consensus 2 ~vvvlG~~gVGKTSli~r~~~~~f~-~~-~~~Ti~~~~~~~~i~~-~~~~v~l~iwDtaGqe~-----------~~~l~~ 67 (202)
T cd04120 2 QVIIIGSRGVGKTSLMRRFTDDTFC-EA-CKSGVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FNSITS 67 (202)
T ss_pred EEEEECcCCCCHHHHHHHHHhCCCC-Cc-CCCcceeEEEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHHHH
Confidence 5889999999999999999876532 21 1111222222233344 33 5678999999875 444555
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.++.++|++++|+|.+++-+... ..|++.+.+..... .|+++|.||+|+...
T Consensus 68 ~y~~~ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~ 120 (202)
T cd04120 68 AYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD 120 (202)
T ss_pred HHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccc
Confidence 67788999999999986544444 45666665543222 689999999998643
No 92
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.68 E-value=1e-15 Score=105.16 Aligned_cols=116 Identities=19% Similarity=0.195 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee-eEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+|+++|++|+|||||++.+++....... .+|.. ........ ++ ..+.++||||..+. ...
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~~ 65 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQIEV-DGQQCMLEILDTAGTEQF-----------TAM 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCchhhhEEEEEEE-CCEEEEEEEEECCCcccc-----------chH
Confidence 58999999999999999999876532111 11111 11122222 33 35678999998762 223
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+..+|++++|+|.++.-+... ..+.+.+.+.... ...|++++.||+|+...
T Consensus 66 ~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 121 (163)
T cd04136 66 RDLYIKNGQGFVLVYSITSQSSFNDLQDLREQILRVKDT-ENVPMVLVGNKCDLEDE 121 (163)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 3345677899999999985433332 4455555544221 23689999999998653
No 93
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.68 E-value=1.1e-15 Score=109.99 Aligned_cols=117 Identities=21% Similarity=0.168 Sum_probs=76.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE--EEEEEEeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
+++++|.+|+|||||++.+++...... ..+|.... .....+.. ...+.+|||||... ....
T Consensus 2 Ki~ivG~~~vGKSsLi~~l~~~~~~~~----~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G~~~-----------~~~l 66 (215)
T cd04109 2 KIVVLGDGAVGKTSLCRRFAKEGFGKS----YKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSI-----------GGKM 66 (215)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCC----CCCceeEEEEEEEEEeCCCCEEEEEEEECCCcHH-----------HHHH
Confidence 689999999999999999997653211 12232222 22333322 34678999999653 2233
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh-hhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~iv~tk~D~~~~ 153 (174)
...++..+|++++|+|.++.-+... ..|++.+.+.... ....|+++|.||+|+...
T Consensus 67 ~~~~~~~ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~ 124 (215)
T cd04109 67 LDKYIYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN 124 (215)
T ss_pred HHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc
Confidence 3445678899999999985433333 4566667665432 122478999999999643
No 94
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.68 E-value=1.2e-15 Score=104.45 Aligned_cols=114 Identities=15% Similarity=0.088 Sum_probs=74.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+++++|..|+|||||++++++.... . ...|.........+ .+..+.++|+||... +......+
T Consensus 1 ki~iiG~~~~GKssli~~~~~~~~~-~----~~~t~~~~~~~~~~-~~~~~~i~D~~G~~~-----------~~~~~~~~ 63 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVV-T----TIPTIGFNVETVEY-KNVSFTVWDVGGQDK-----------IRPLWKHY 63 (158)
T ss_pred CEEEEcCCCCCHHHHHHHHhcCCCC-C----CCCCcCcceEEEEE-CCEEEEEEECCCChh-----------hHHHHHHH
Confidence 5799999999999999999988621 2 12233333344444 567899999999875 23334445
Q ss_pred cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+..+|++++|+|++++-.... ..++..+..... ....|+++++||+|+...
T Consensus 64 ~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~-~~~~piiiv~nK~D~~~~ 115 (158)
T cd00878 64 YENTNGIIFVVDSSDRERIEEAKEELHKLLNEEE-LKGVPLLIFANKQDLPGA 115 (158)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCcEEEEeeccCCccc
Confidence 667899999999984322221 233333333211 122699999999999765
No 95
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.68 E-value=2.1e-15 Score=104.19 Aligned_cols=112 Identities=15% Similarity=0.155 Sum_probs=73.4
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 030624 23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 102 (174)
Q Consensus 23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~ 102 (174)
|+++|+.|+|||||++.+.+....... .+|.......... .+..+.+|||||... +...+...+
T Consensus 2 i~ivG~~~vGKTsli~~~~~~~~~~~~----~pt~g~~~~~i~~-~~~~l~i~Dt~G~~~-----------~~~~~~~~~ 65 (164)
T cd04162 2 ILVLGLDGAGKTSLLHSLSSERSLESV----VPTTGFNSVAIPT-QDAIMELLEIGGSQN-----------LRKYWKRYL 65 (164)
T ss_pred EEEECCCCCCHHHHHHHHhcCCCcccc----cccCCcceEEEee-CCeEEEEEECCCCcc-----------hhHHHHHHH
Confidence 789999999999999999987532221 1222222233334 567899999999875 333334456
Q ss_pred CCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 103 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 103 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.++|++++|+|.+++..... +.++..+.. .....|+++|.||.|+...
T Consensus 66 ~~ad~ii~V~D~t~~~s~~~~~~~l~~~~~---~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 66 SGSQGLIFVVDSADSERLPLARQELHQLLQ---HPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred hhCCEEEEEEECCCHHHHHHHHHHHHHHHh---CCCCCcEEEEEeCcCCcCC
Confidence 77899999999985432222 333333322 1223699999999998654
No 96
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.68 E-value=9.5e-16 Score=104.71 Aligned_cols=116 Identities=23% Similarity=0.283 Sum_probs=73.6
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCC
Q 030624 25 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG 104 (174)
Q Consensus 25 i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (174)
++|.+|+|||||+|++++.... .+ ...+.|.......+.+ ++..+.++||||+.+...... ...+....... ..
T Consensus 1 l~G~~~~GKssl~~~~~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~--~~~~~~~~~~~-~~ 74 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGARQK-VG-NWPGVTVEKKEGRFKL-GGKEIEIVDLPGTYSLSPYSE--DEKVARDFLLG-EK 74 (158)
T ss_pred CCCCCCCCHHHHHHHHhcCccc-cc-CCCCcccccceEEEee-CCeEEEEEECCCccccCCCCh--hHHHHHHHhcC-CC
Confidence 5799999999999999997632 22 2234455554555555 567899999999976432211 11122221111 58
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 105 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 105 ~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+|++++|+|+.+ ... ...+...+.+. ..|+++|+||+|+.+.
T Consensus 75 ~d~vi~v~d~~~-~~~-~~~~~~~~~~~-----~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 75 PDLIVNVVDATN-LER-NLYLTLQLLEL-----GLPVVVALNMIDEAEK 116 (158)
T ss_pred CcEEEEEeeCCc-chh-HHHHHHHHHHc-----CCCEEEEEehhhhccc
Confidence 899999999984 322 22333333321 2699999999999765
No 97
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.68 E-value=1.7e-15 Score=103.07 Aligned_cols=114 Identities=20% Similarity=0.147 Sum_probs=72.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 030624 23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 102 (174)
Q Consensus 23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~ 102 (174)
|+++|++|+|||||+|.|.+....... .+|.......... ....+.++|+||... +...+..++
T Consensus 2 i~i~G~~~~GKssl~~~l~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~~~D~~g~~~-----------~~~~~~~~~ 65 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGGQFSEDT----IPTVGFNMRKVTK-GNVTLKVWDLGGQPR-----------FRSMWERYC 65 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccCCCCcCc----cCCCCcceEEEEE-CCEEEEEEECCCCHh-----------HHHHHHHHH
Confidence 789999999999999999997643221 1222233333333 456789999999764 334444556
Q ss_pred CCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 103 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 103 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+|++++|+|.++...... ..++..+..... ....|+++|+||+|+...
T Consensus 66 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 66 RGVNAIVYVVDAADRTALEAAKNELHDLLEKPS-LEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred hcCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hcCCCEEEEEeCccccCC
Confidence 77899999999984322111 222222222111 122589999999998765
No 98
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=1.1e-15 Score=107.71 Aligned_cols=118 Identities=18% Similarity=0.195 Sum_probs=75.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+|+++|+.|+|||||++.+++........ ...+.......+.... ...+.++||||... +.....
T Consensus 1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~--~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~~~-----------~~~~~~ 67 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTK--STIGVDFKIKTVYIENKIIKLQIWDTNGQER-----------FRSLNN 67 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CceeeEEEEEEEEECCEEEEEEEEECCCcHH-----------HHhhHH
Confidence 378999999999999999999876422111 1112222222333311 23568999999654 333445
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+.++|++++|+|.+++-+... ..|+..+....... .|++++.||.|+...
T Consensus 68 ~~~~~~d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~ 120 (188)
T cd04125 68 SYYRGAHGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNN 120 (188)
T ss_pred HHccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCccc
Confidence 56788999999999985433332 34555555543222 589999999998743
No 99
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.68 E-value=1.2e-15 Score=107.78 Aligned_cols=118 Identities=14% Similarity=0.140 Sum_probs=74.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+|+++|++|+|||||++.+.+....... ................. ....+.+|||||... +.....
T Consensus 1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 68 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGN-FIATVGIDFRNKVVTVDGVKVKLQIWDTAGQER-----------FRSVTH 68 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCccC-cCCcccceeEEEEEEECCEEEEEEEEeCCCcHH-----------HHHhhH
Confidence 37899999999999999999876532111 11111111111112221 124578999999653 333334
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
..+..+|++++|+|.++..+... ..++..+.+..... .|+++|.||+|+..
T Consensus 69 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~ 120 (191)
T cd04112 69 AYYRDAHALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSG 120 (191)
T ss_pred HHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchh
Confidence 45678899999999985433332 55666666653322 58999999999864
No 100
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.68 E-value=2.9e-15 Score=124.44 Aligned_cols=125 Identities=22% Similarity=0.241 Sum_probs=85.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH-
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI- 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~- 98 (174)
..+|+++|.+|+|||||+|+|++....... ...+.|.........+ ++..+.++||||+.+..... ...+....+
T Consensus 450 ~~kI~ivG~~nvGKSSLin~l~~~~~~~v~-~~~gtT~d~~~~~~~~-~~~~~~liDTaG~~~~~~~~--~~~e~~~~~r 525 (712)
T PRK09518 450 LRRVALVGRPNVGKSSLLNQLTHEERAVVN-DLAGTTRDPVDEIVEI-DGEDWLFIDTAGIKRRQHKL--TGAEYYSSLR 525 (712)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCccccccC-CCCCCCcCcceeEEEE-CCCEEEEEECCCcccCcccc--hhHHHHHHHH
Confidence 479999999999999999999987632111 2233444443334445 67788899999987532221 112222222
Q ss_pred -HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 -GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 -~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++..+|++++|+|++++.+..+..++..+.+. . .|+++|+||+|+...
T Consensus 526 ~~~~i~~advvilViDat~~~s~~~~~i~~~~~~~---~--~piIiV~NK~DL~~~ 576 (712)
T PRK09518 526 TQAAIERSELALFLFDASQPISEQDLKVMSMAVDA---G--RALVLVFNKWDLMDE 576 (712)
T ss_pred HHHHhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEEchhcCCh
Confidence 2346788999999999988888887766555432 2 699999999999764
No 101
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.68 E-value=2.8e-15 Score=105.27 Aligned_cols=115 Identities=12% Similarity=0.090 Sum_probs=75.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|++|+|||||++.+...... . ..+|.......... .+..+.++||||... +...+.
T Consensus 17 ~~kv~lvG~~~vGKTsli~~~~~~~~~-~----~~~T~~~~~~~~~~-~~~~~~l~D~~G~~~-----------~~~~~~ 79 (182)
T PTZ00133 17 EVRILMVGLDAAGKTTILYKLKLGEVV-T----TIPTIGFNVETVEY-KNLKFTMWDVGGQDK-----------LRPLWR 79 (182)
T ss_pred ccEEEEEcCCCCCHHHHHHHHhcCCcc-c----cCCccccceEEEEE-CCEEEEEEECCCCHh-----------HHHHHH
Confidence 378999999999999999999754432 1 11233333333444 567899999999864 444455
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 153 (174)
.++.++|++|+|+|.++.-+..+ ..+.+.+..... ...|+++|.||.|+.+.
T Consensus 80 ~~~~~ad~iI~v~D~t~~~s~~~--~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 133 (182)
T PTZ00133 80 HYYQNTNGLIFVVDSNDRERIGD--AREELERMLSEDELRDAVLLVFANKQDLPNA 133 (182)
T ss_pred HHhcCCCEEEEEEeCCCHHHHHH--HHHHHHHHHhCHhhcCCCEEEEEeCCCCCCC
Confidence 56788999999999984322221 122233332221 23689999999998653
No 102
>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]
Probab=99.68 E-value=7.7e-16 Score=112.67 Aligned_cols=131 Identities=19% Similarity=0.206 Sum_probs=102.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC-hHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG-SEFVGKEIVK 96 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~-~~~~~~~~~~ 96 (174)
.+...++++|.+++|||||.|.+.|...+.. +....|+..+...+-...+..+.|+||||+...... .+..+..+..
T Consensus 70 ~k~L~vavIG~PNvGKStLtN~mig~kv~~v--S~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq 147 (379)
T KOG1423|consen 70 QKSLYVAVIGAPNVGKSTLTNQMIGQKVSAV--SRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQ 147 (379)
T ss_pred ceEEEEEEEcCCCcchhhhhhHhhCCccccc--cccccceeeeeeEEEecCceEEEEecCCcccccchhhhHHHHHHhhh
Confidence 3457899999999999999999999987544 566677777777776667788999999999986553 3444555555
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
-.+.++..+|++++++|+++.-.......+..+..+.. .|.++|+||.|..+..
T Consensus 148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~----ips~lvmnkid~~k~k 201 (379)
T KOG1423|consen 148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSK----IPSILVMNKIDKLKQK 201 (379)
T ss_pred CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhc----CCceeeccchhcchhh
Confidence 56667888999999999986445555777888888752 4789999999998763
No 103
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.68 E-value=4.1e-15 Score=100.96 Aligned_cols=119 Identities=25% Similarity=0.212 Sum_probs=76.4
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCC
Q 030624 25 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDG 104 (174)
Q Consensus 25 i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (174)
++|+.|+|||||+|+|++......+ ...+.+...............+.++||||+.+............ ......
T Consensus 1 i~G~~gsGKstl~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~~~~~~~----~~~~~~ 75 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVS-PVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGREREELA----RRVLER 75 (163)
T ss_pred CcCCCCCCHHHHHHHHhCccccccC-CCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchhhHHHHH----HHHHHh
Confidence 5899999999999999987644222 12223333333333332266899999999998654333322222 234456
Q ss_pred ceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 105 IHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 105 ~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+|.+++++++.+........+...... ...|+++|+||+|+...
T Consensus 76 ~d~il~v~~~~~~~~~~~~~~~~~~~~-----~~~~~ivv~nK~D~~~~ 119 (163)
T cd00880 76 ADLILFVVDADLRADEEEEKLLELLRE-----RGKPVLLVLNKIDLLPE 119 (163)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHh-----cCCeEEEEEEccccCCh
Confidence 799999999985555555542222222 12689999999999876
No 104
>CHL00071 tufA elongation factor Tu
Probab=99.68 E-value=4e-16 Score=122.07 Aligned_cols=119 Identities=16% Similarity=0.196 Sum_probs=83.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
.+..+++++|+.++|||||+++|++..... ..+...+.|.......+.+ ++..+.++||||+.+
T Consensus 10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~-~~~~~~~iDtPGh~~- 87 (409)
T CHL00071 10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD- 87 (409)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEcc-CCeEEEEEECCChHH-
Confidence 345889999999999999999999752110 0111234555544444444 566789999999653
Q ss_pred CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCCC
Q 030624 84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELED 153 (174)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~~ 153 (174)
+...+...+..+|++++|+|+..++...+.+.+..+.... .| +++++||+|+...
T Consensus 88 ----------~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g-----~~~iIvvvNK~D~~~~ 143 (409)
T CHL00071 88 ----------YVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVG-----VPNIVVFLNKEDQVDD 143 (409)
T ss_pred ----------HHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCEEEEEEEccCCCCH
Confidence 3333334456779999999998788888888887666542 35 7789999999864
No 105
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.68 E-value=1.7e-15 Score=119.71 Aligned_cols=121 Identities=26% Similarity=0.311 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+++++|.+|+|||||+|+|++....... ...+.|.......+.+ .+..+.++||||+.++. +.......+....
T Consensus 216 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~i~l~DT~G~~~~~---~~ie~~gi~~~~~ 290 (449)
T PRK05291 216 LKVVIAGRPNVGKSSLLNALLGEERAIVT-DIAGTTRDVIEEHINL-DGIPLRLIDTAGIRETD---DEVEKIGIERSRE 290 (449)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcccccEEEEEEE-CCeEEEEEeCCCCCCCc---cHHHHHHHHHHHH
Confidence 78999999999999999999987632121 2234454444444555 67789999999987532 2222222222333
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|++++.+..+...+ .. .. ..|+++|+||+|+...
T Consensus 291 ~~~~aD~il~VvD~s~~~s~~~~~~l---~~--~~--~~piiiV~NK~DL~~~ 336 (449)
T PRK05291 291 AIEEADLVLLVLDASEPLTEEDDEIL---EE--LK--DKPVIVVLNKADLTGE 336 (449)
T ss_pred HHHhCCEEEEEecCCCCCChhHHHHH---Hh--cC--CCCcEEEEEhhhcccc
Confidence 56778999999999866655543333 22 11 2589999999999754
No 106
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.67 E-value=1.7e-15 Score=105.85 Aligned_cols=119 Identities=14% Similarity=0.054 Sum_probs=75.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-----------CCcEEEEEeCCCCCCCCCChHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------DGQVVNVIDTPGLFDFSAGSEF 89 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------~~~~~~~iDtpG~~~~~~~~~~ 89 (174)
.+|+++|++|+|||||++.+.+...... ...............+. ....+.+|||||...
T Consensus 5 ~ki~ivG~~~vGKTsli~~~~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~------- 75 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKFNPK--FITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQER------- 75 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHhcCCCCcc--CCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHH-------
Confidence 7899999999999999999988653211 11111111111122221 124678999999653
Q ss_pred HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 90 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+.......+..+|++++|+|.++.-+... ..|+..+..... ....|+++|.||+|+...
T Consensus 76 ----~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piiiv~nK~Dl~~~ 135 (180)
T cd04127 76 ----FRSLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAY-CENPDIVLCGNKADLEDQ 135 (180)
T ss_pred ----HHHHHHHHhCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCcEEEEEeCccchhc
Confidence 44445556778999999999985433333 455555544321 112589999999998653
No 107
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.67 E-value=2.6e-15 Score=121.52 Aligned_cols=126 Identities=19% Similarity=0.268 Sum_probs=86.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+.++|+++|+.++|||||+++|.+...... ...+.|.......+.+.....+.+|||||+.++ ....
T Consensus 86 r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~~--e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe~F-----------~~~r 152 (587)
T TIGR00487 86 RPPVVTIMGHVDHGKTSLLDSIRKTKVAQG--EAGGITQHIGAYHVENEDGKMITFLDTPGHEAF-----------TSMR 152 (587)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhCCcccc--cCCceeecceEEEEEECCCcEEEEEECCCCcch-----------hhHH
Confidence 457999999999999999999998764322 223455554455555523348999999998863 2222
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 162 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~ 162 (174)
...+..+|++++|++++++....+.+.+..+... . .|+++++||+|+...+...+.+.+
T Consensus 153 ~rga~~aDiaILVVda~dgv~~qT~e~i~~~~~~---~--vPiIVviNKiDl~~~~~e~v~~~L 211 (587)
T TIGR00487 153 ARGAKVTDIVVLVVAADDGVMPQTIEAISHAKAA---N--VPIIVAINKIDKPEANPDRVKQEL 211 (587)
T ss_pred HhhhccCCEEEEEEECCCCCCHhHHHHHHHHHHc---C--CCEEEEEECcccccCCHHHHHHHH
Confidence 3456778999999999877777776665443332 2 589999999999754333344443
No 108
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.67 E-value=2.2e-15 Score=106.27 Aligned_cols=126 Identities=13% Similarity=0.065 Sum_probs=77.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+++++|++|||||||++++.+.... .. .+|.......+.+ .+..+.++|+||... ....+.
T Consensus 19 ~~ki~ilG~~~~GKStLi~~l~~~~~~-~~----~~T~~~~~~~i~~-~~~~~~l~D~~G~~~-----------~~~~~~ 81 (190)
T cd00879 19 EAKILFLGLDNAGKTTLLHMLKDDRLA-QH----VPTLHPTSEELTI-GNIKFKTFDLGGHEQ-----------ARRLWK 81 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCc-cc----CCccCcceEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 378999999999999999999986532 11 1122222233444 567889999999654 233344
Q ss_pred hccCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC-ChhhHHHHhc
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLG 163 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~-~~~~~~~~~~ 163 (174)
.++.++|++++|+|.++.-... ...++..+.+.. .....|+++++||+|+.+. ....++++++
T Consensus 82 ~~~~~ad~iilV~D~~~~~s~~~~~~~~~~i~~~~-~~~~~pvivv~NK~Dl~~~~~~~~~~~~~~ 146 (190)
T cd00879 82 DYFPEVDGIVFLVDAADPERFQESKEELDSLLSDE-ELANVPFLILGNKIDLPGAVSEEELRQALG 146 (190)
T ss_pred HHhccCCEEEEEEECCcHHHHHHHHHHHHHHHcCc-cccCCCEEEEEeCCCCCCCcCHHHHHHHhC
Confidence 5567889999999997432111 123333332211 1123699999999998643 2233444443
No 109
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.67 E-value=2.1e-15 Score=107.34 Aligned_cols=118 Identities=17% Similarity=0.145 Sum_probs=74.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..+|+++|++|+|||||++.+.+....... ............+.... ...+.+|||||... +....
T Consensus 6 ~~kivvvG~~~vGKTsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~~~-----------~~~~~ 72 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTFSGSY--ITTIGVDFKIRTVEINGERVKLQIWDTAGQER-----------FRTIT 72 (199)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCc--CccccceeEEEEEEECCEEEEEEEEeCCCchh-----------HHHHH
Confidence 378999999999999999999986532111 11111112222222211 23578999999764 23333
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.+++-+... ..+++.+.... ...|+++|.||+|+...
T Consensus 73 ~~~~~~a~~iilv~D~~~~~s~~~~~~~~~~i~~~~---~~~piivVgNK~Dl~~~ 125 (199)
T cd04110 73 STYYRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNC---DDVCKVLVGNKNDDPER 125 (199)
T ss_pred HHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc
Confidence 445677899999999985433332 44555554432 22589999999998754
No 110
>PRK04213 GTP-binding protein; Provisional
Probab=99.67 E-value=6.3e-15 Score=104.89 Aligned_cols=125 Identities=22% Similarity=0.214 Sum_probs=73.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
.....+|+++|.+|+|||||+|+|++.... .+ ...+.|... ....+ ..+.+|||||+.......+.....++.
T Consensus 6 ~~~~~~i~i~G~~~~GKSsLin~l~~~~~~-~~-~~~~~t~~~--~~~~~---~~~~l~Dt~G~~~~~~~~~~~~~~~~~ 78 (201)
T PRK04213 6 PDRKPEIVFVGRSNVGKSTLVRELTGKKVR-VG-KRPGVTRKP--NHYDW---GDFILTDLPGFGFMSGVPKEVQEKIKD 78 (201)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCceeeCc--eEEee---cceEEEeCCccccccccCHHHHHHHHH
Confidence 344579999999999999999999987632 22 122333322 22222 258999999975432222211222222
Q ss_pred ----HHHhccCCceEEEEEEeCCCCCC-----------HHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 ----CIGMAKDGIHAVLVVFSVRSRFS-----------QEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ----~~~~~~~~~~~il~v~~~~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
++......++++++|+|.++... ..+.+....+... ..|+++|+||+|+...
T Consensus 79 ~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~p~iiv~NK~Dl~~~ 145 (201)
T PRK04213 79 EIVRYIEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLREL-----GIPPIVAVNKMDKIKN 145 (201)
T ss_pred HHHHHHHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHc-----CCCeEEEEECccccCc
Confidence 23334456789999999863211 1122333333321 2689999999998654
No 111
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.67 E-value=1.2e-15 Score=107.87 Aligned_cols=116 Identities=16% Similarity=0.282 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcc---cc--cccCCCCcceeeEEEEEEEe-------------CCcEEEEEeCCCCCCC
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRA---FK--SRASSSGVTSTCEMQRTVLK-------------DGQVVNVIDTPGLFDF 83 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~---~~--~~~~~~~~t~~~~~~~~~~~-------------~~~~~~~iDtpG~~~~ 83 (174)
+|+++|+.|+|||||++++++... +. ......+.|.........+. ....+.++||||+..
T Consensus 2 ~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~- 80 (192)
T cd01889 2 NVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS- 80 (192)
T ss_pred eEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHH-
Confidence 689999999999999999987310 00 00111234444444444331 256789999999842
Q ss_pred CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+.+........+|++++|+|+.+.....+.+.+..... . ..|+++++||+|+...
T Consensus 81 ----------~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~-~----~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 81 ----------LIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEI-L----CKKLIVVLNKIDLIPE 135 (192)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHH-c----CCCEEEEEECcccCCH
Confidence 22222233456799999999986666665544433222 1 2589999999999754
No 112
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.67 E-value=2.4e-15 Score=106.90 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
+|+++|.+|+|||||++.+++...... ..+..+.......+.+ ++ ..+.++||||....... ...++.....
T Consensus 2 kI~ivG~~~vGKTsLi~~~~~~~f~~~--~~pt~~~~~~~~~i~~-~~~~~~l~i~Dt~G~~~~~~~---~~~e~~~~~~ 75 (198)
T cd04142 2 RVAVLGAPGVGKTAIVRQFLAQEFPEE--YIPTEHRRLYRPAVVL-SGRVYDLHILDVPNMQRYPGT---AGQEWMDPRF 75 (198)
T ss_pred EEEEECCCCCcHHHHHHHHHcCCCCcc--cCCccccccceeEEEE-CCEEEEEEEEeCCCcccCCcc---chhHHHHHHH
Confidence 789999999999999999998653221 1111111111122333 33 35789999998753321 1112222223
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHh-hhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-KKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-~~~~~~~~iv~tk~D~~~~ 153 (174)
..+..+|++++|+|.+++-+... ..+.+.+.+... .....|+++|.||+|+...
T Consensus 76 ~~~~~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 76 RGLRNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred hhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 34577899999999985433332 344444544321 1123699999999999653
No 113
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.67 E-value=4e-15 Score=104.39 Aligned_cols=115 Identities=14% Similarity=0.078 Sum_probs=76.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|..|+|||||++.+....... ..+|.......... .+..+.++|+||... +...+.
T Consensus 17 ~~ki~ivG~~~~GKTsl~~~l~~~~~~~-----~~pt~g~~~~~~~~-~~~~~~i~D~~Gq~~-----------~~~~~~ 79 (181)
T PLN00223 17 EMRILMVGLDAAGKTTILYKLKLGEIVT-----TIPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWR 79 (181)
T ss_pred ccEEEEECCCCCCHHHHHHHHccCCCcc-----ccCCcceeEEEEEE-CCEEEEEEECCCCHH-----------HHHHHH
Confidence 3799999999999999999998654321 12232333334444 567899999999754 444555
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 153 (174)
..+.++|++++|+|.+++-... ...+.+.+.+... ...|++++.||.|+.+.
T Consensus 80 ~~~~~a~~iI~V~D~s~~~s~~--~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 80 HYFQNTQGLIFVVDSNDRDRVV--EARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHhccCCEEEEEEeCCcHHHHH--HHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 5678899999999998432222 2222333333221 13689999999998654
No 114
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.67 E-value=1.5e-15 Score=104.90 Aligned_cols=114 Identities=17% Similarity=0.098 Sum_probs=73.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
+++++|..|+|||||++++.+...... .. .+.........+ .....+.+|||||.... ...+..
T Consensus 2 kv~ivG~~~vGKTsl~~~l~~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~~~ 66 (166)
T cd01893 2 RIVLIGDEGVGKSSLIMSLVSEEFPEN-VP---RVLPEITIPADVTPERVPTTIVDTSSRPQD-----------RANLAA 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcc-CC---CcccceEeeeeecCCeEEEEEEeCCCchhh-----------hHHHhh
Confidence 789999999999999999998764322 11 111111111111 13456789999997651 122233
Q ss_pred ccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|.+++-+... ..|++.+.... . ..|+++|+||+|+...
T Consensus 67 ~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~-~--~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 67 EIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLG-V--KVPIILVGNKSDLRDG 118 (166)
T ss_pred hcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhcccc
Confidence 4577899999999985444333 34556565542 2 3699999999999764
No 115
>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.66 E-value=1.3e-15 Score=104.73 Aligned_cols=120 Identities=16% Similarity=0.177 Sum_probs=90.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+|+++|.+|+|||.|+..+.+.........+.+ .+......++. +...+.+|||.|..+ ++....
T Consensus 10 FKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIG--VDf~~rt~e~~gk~iKlQIWDTAGQER-----------Frtit~ 76 (205)
T KOG0084|consen 10 FKIILIGDSGVGKTCLLLRFKDDTFTESYISTIG--VDFKIRTVELDGKTIKLQIWDTAGQER-----------FRTITS 76 (205)
T ss_pred EEEEEECCCCcChhhhhhhhccCCcchhhcceee--eEEEEEEeeecceEEEEEeeeccccHH-----------HhhhhH
Confidence 7899999999999999999998876544333333 33333344431 234789999999987 667778
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 155 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~ 155 (174)
..++++|+||+|+|.+..-+... ..|+..+....... .+.++|.||+|+.+...
T Consensus 77 syYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~ 131 (205)
T KOG0084|consen 77 SYYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRV 131 (205)
T ss_pred hhccCCCeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhhee
Confidence 88999999999999986555554 67888888876555 48999999999987543
No 116
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.66 E-value=1.5e-15 Score=105.55 Aligned_cols=116 Identities=19% Similarity=0.101 Sum_probs=73.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+|+++|..|+|||||++.+++...... ..+|....+ ...... ....+.+|||||... +....
T Consensus 2 ki~ivG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (170)
T cd04108 2 KVIVVGDLSVGKTCLINRFCKDVFDKN----YKATIGVDFEMERFEILGVPFSLQLWDTAGQER-----------FKCIA 66 (170)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEeCCChHH-----------HHhhH
Confidence 689999999999999999998754222 122222222 222221 124689999999865 33333
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+.++|++++|+|.+++-+... ..|++.+.+.... ...|+++|.||+|+...
T Consensus 67 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 67 STYYRGAQAIIIVFDLTDVASLEHTRQWLEDALKENDP-SSVLLFLVGTKKDLSSP 121 (170)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEChhcCcc
Confidence 456778999999999974322222 4555554433211 12478999999998643
No 117
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.66 E-value=2.4e-15 Score=105.68 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=73.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE--eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|.+|+|||||++.++..... ......+.+. ....... .....+.++||||... +...
T Consensus 3 ~~kv~~vG~~~~GKTsli~~~~~~~~~-~~~~t~~~~~--~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~ 68 (183)
T cd04152 3 SLHIVMLGLDSAGKTTVLYRLKFNEFV-NTVPTKGFNT--EKIKVSLGNSKGITFHFWDVGGQEK-----------LRPL 68 (183)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCcC-CcCCccccce--eEEEeeccCCCceEEEEEECCCcHh-----------HHHH
Confidence 368999999999999999999876532 1111111111 1111111 1345789999999754 3334
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+..++..+|++++|+|+++.-+... ..++..+...... ...|+++++||+|+..
T Consensus 69 ~~~~~~~~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 69 WKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSEN-QGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhhhhc-CCCcEEEEEECcCccc
Confidence 4455678899999999984322222 2334334433221 2369999999999864
No 118
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.66 E-value=1.9e-15 Score=104.55 Aligned_cols=118 Identities=15% Similarity=0.128 Sum_probs=74.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+++++|++|+|||||++.+++....... ....+.........+ .+ ..+.++|+||... +...
T Consensus 7 ~~~v~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~ 72 (169)
T cd04114 7 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQ--GATIGVDFMIKTVEI-KGEKIKLQIWDTAGQER-----------FRSI 72 (169)
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCCCCCCC--CCceeeEEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHH
Confidence 389999999999999999999865432121 111111222222333 33 3578899999764 3333
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...++..+|++++|+|.++..+... ..++..+....... .|++++.||+|+...
T Consensus 73 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~ 127 (169)
T cd04114 73 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAER 127 (169)
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccc
Confidence 3445678899999999874432222 35555555543323 588999999998654
No 119
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.66 E-value=2.8e-15 Score=103.17 Aligned_cols=114 Identities=17% Similarity=0.164 Sum_probs=73.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee--EEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC--EMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
+|+++|++|+|||||++.+++....... ..|... ....... .+ ..+.++||||... ....
T Consensus 2 ki~vvG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~-~~~~~~l~i~D~~g~~~-----------~~~~ 65 (161)
T cd04117 2 RLLLIGDSGVGKTCLLCRFTDNEFHSSH----ISTIGVDFKMKTIEV-DGIKVRIQIWDTAGQER-----------YQTI 65 (161)
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCC----CCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHh-----------HHhh
Confidence 6899999999999999999876543221 122222 2222333 22 3578999999765 2233
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.......+|++++|+|.+++-+... ..+++.+...... ..|+++|.||.|+...
T Consensus 66 ~~~~~~~~~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~--~~~iilvgnK~Dl~~~ 120 (161)
T cd04117 66 TKQYYRRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPE--GVQKILIGNKADEEQK 120 (161)
T ss_pred HHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECcccccc
Confidence 3445678899999999985433333 4555555544222 2589999999998654
No 120
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.66 E-value=2.5e-15 Score=108.47 Aligned_cols=117 Identities=15% Similarity=0.048 Sum_probs=77.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEI 94 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~ 94 (174)
....+|+++|..|+|||||++.++........ ..|....+. ..... ....+.+|||||... +
T Consensus 11 ~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~----~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~ 75 (219)
T PLN03071 11 YPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEK-----------F 75 (219)
T ss_pred CCceEEEEECcCCCCHHHHHHHHhhCCCCCcc----CCccceeEEEEEEEECCeEEEEEEEECCCchh-----------h
Confidence 44589999999999999999998765432111 122222222 22221 235789999999876 2
Q ss_pred HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.......+..+|++|+|+|.+++.+... ..|++.+.+.. . ..|+++|.||+|+..
T Consensus 76 ~~~~~~~~~~~~~~ilvfD~~~~~s~~~i~~w~~~i~~~~-~--~~piilvgNK~Dl~~ 131 (219)
T PLN03071 76 GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-E--NIPIVLCGNKVDVKN 131 (219)
T ss_pred hhhhHHHcccccEEEEEEeCCCHHHHHHHHHHHHHHHHhC-C--CCcEEEEEEchhhhh
Confidence 2333445678899999999986544443 46666666543 2 269999999999854
No 121
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=2.1e-15 Score=112.05 Aligned_cols=116 Identities=22% Similarity=0.255 Sum_probs=77.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccc--ccccCC--------------CCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAF--KSRASS--------------SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~--~~~~~~--------------~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
+|+++|++|+|||||+++|+..... ..+... ...+.........+ ++..+.++||||..+
T Consensus 1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~~--- 76 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEW-KGHKINLIDTPGYAD--- 76 (268)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEE-CCEEEEEEECcCHHH---
Confidence 4799999999999999999753211 111100 12233334445556 677899999999875
Q ss_pred ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
+...+..++..+|.+++|+|+++.........++.+... ..|.++++||+|.....
T Consensus 77 --------f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~~~~~~~~-----~~p~iivvNK~D~~~~~ 132 (268)
T cd04170 77 --------FVGETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEA-----GIPRIIFINKMDRERAD 132 (268)
T ss_pred --------HHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECCccCCCC
Confidence 222233344566999999999877666666665544432 25889999999998653
No 122
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.66 E-value=1.4e-15 Score=105.17 Aligned_cols=114 Identities=22% Similarity=0.165 Sum_probs=73.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+|+++|++|+|||||++.++....... ...|.........+. ....+.++||||...... ..
T Consensus 2 ki~vvG~~~vGKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~-----------~~ 66 (166)
T cd00877 2 KLVLVGDGGTGKTTFVKRHLTGEFEKK----YVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKFGG-----------LR 66 (166)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC----CCCceeeEEEEEEEEECCEEEEEEEEECCCChhhcc-----------cc
Confidence 789999999999999999986543211 122332233222221 234678999999865321 11
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.+++-+... ..++..+..... ..|+++|.||+|+...
T Consensus 67 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~---~~piiiv~nK~Dl~~~ 119 (166)
T cd00877 67 DGYYIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCG---NIPIVLCGNKVDIKDR 119 (166)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCcEEEEEEchhcccc
Confidence 224567899999999985433333 456666665543 3699999999998643
No 123
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.66 E-value=3.5e-15 Score=103.36 Aligned_cols=117 Identities=15% Similarity=0.128 Sum_probs=71.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
+|+++|++|+|||||++++.+....... ..............+ .+ ..+.++|+||... +.....
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~~~D~~g~~~-----------~~~~~~ 67 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNKKFSNQY--KATIGADFLTKEVTV-DDKLVTLQIWDTAGQER-----------FQSLGV 67 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCc--CCccceEEEEEEEEE-CCEEEEEEEEeCCChHH-----------HHhHHH
Confidence 7899999999999999999987632111 111111111222333 22 3467999999754 223334
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~ 152 (174)
..+.++|++++++|..++.+... ..+.+.+...... ....|+++|+||+|+..
T Consensus 68 ~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 68 AFYRGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 55678899999999975433222 2333333332221 11368999999999984
No 124
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.66 E-value=3.3e-15 Score=102.27 Aligned_cols=116 Identities=22% Similarity=0.193 Sum_probs=72.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee-EEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+|+++|++|+|||||+|++++....... .+|... ....... .+ ..+.+|||||... +...
T Consensus 2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~l 65 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHFVDEY----DPTIEDSYRKQVVI-DGETCLLDILDTAGQEE-----------YSAM 65 (162)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCcCCc----CCcchheEEEEEEE-CCEEEEEEEEECCCCcc-----------hHHH
Confidence 58999999999999999999986532211 111111 1122222 22 3467899999765 2333
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+..+|++++|++.++.-+... ..+...+.+.... ...|+++|.||+|+...
T Consensus 66 ~~~~~~~~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piivv~nK~Dl~~~ 121 (162)
T cd04138 66 RDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIKRVKDS-DDVPMVLVGNKCDLAAR 121 (162)
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 3345567799999999884332222 3444455544221 22689999999998753
No 125
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.66 E-value=3e-15 Score=102.98 Aligned_cols=116 Identities=19% Similarity=0.199 Sum_probs=71.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
+|+++|++|+|||||++++.+........ . .+.......... +. ..+.++||||..+. .....
T Consensus 2 ki~v~G~~~~GKTsli~~~~~~~~~~~~~--~-t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~-----------~~~~~ 66 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQGHFVDDYD--P-TIEDSYRKQIEI-DGEVCLLDILDTAGQEEF-----------SAMRD 66 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCcCCcccC--C-chhhhEEEEEEE-CCEEEEEEEEECCCcccc-----------hHHHH
Confidence 78999999999999999999865322211 1 111111122222 22 35778999998762 22223
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+..+|++++|+|.++.-+... ..+.+.+.+.... ...|++++.||+|+...
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~ 120 (164)
T smart00173 67 QYMRTGEGFLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESE 120 (164)
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 34556799999999984332222 3444444443222 12689999999998653
No 126
>PLN03110 Rab GTPase; Provisional
Probab=99.66 E-value=3.2e-15 Score=107.65 Aligned_cols=117 Identities=16% Similarity=0.132 Sum_probs=77.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
..+|+++|++|+|||||++.+++....... ..|....+ ..+... ....+.+|||||..+ +..
T Consensus 12 ~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~----~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~-----------~~~ 76 (216)
T PLN03110 12 LFKIVLIGDSGVGKSNILSRFTRNEFCLES----KSTIGVEFATRTLQVEGKTVKAQIWDTAGQER-----------YRA 76 (216)
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCceeEEEEEEEEEECCEEEEEEEEECCCcHH-----------HHH
Confidence 379999999999999999999987643221 12222222 222221 123678999999664 334
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..++++++|+|.++.-+... ..|+..+....... .|++++.||+|+...
T Consensus 77 ~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~ 132 (216)
T PLN03110 77 ITSAYYRGAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHL 132 (216)
T ss_pred HHHHHhCCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccc
Confidence 44556678899999999985433333 45666666543222 589999999998543
No 127
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=99.66 E-value=1.6e-14 Score=104.89 Aligned_cols=138 Identities=16% Similarity=0.148 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccc--ccCCCCcce-----------------------------------------
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKS--RASSSGVTS----------------------------------------- 57 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~--~~~~~~~t~----------------------------------------- 57 (174)
+.++++|++|+||||++++|+|...+.. |..+..++.
T Consensus 27 p~i~vvG~~~~GKSt~l~~i~g~~~~~~~~g~~t~~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~~~ 106 (240)
T smart00053 27 PQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVTGT 106 (240)
T ss_pred CeEEEEcCCCccHHHHHHHHhCCCccccCCCcccccceEEEccCCCCcceEEEecCCcccCCHHHHHHHHHHHHHHhcCC
Confidence 6899999999999999999999752222 111100000
Q ss_pred ------eeEEEEEEEeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccC-CceEEEEEEeCCCCCCHHH-HHHHH
Q 030624 58 ------TCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKD-GIHAVLVVFSVRSRFSQEE-EAALH 127 (174)
Q Consensus 58 ------~~~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~il~v~~~~~~~~~~~-~~~l~ 127 (174)
..-...+..+....+.++||||+..... ........+.+.+..+.. ..+.+++|+++...+...+ .++.+
T Consensus 107 ~~~~s~~~i~l~i~~p~~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~ 186 (240)
T smart00053 107 NKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAK 186 (240)
T ss_pred CCcccCcceEEEEeCCCCCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHH
Confidence 0001111112235689999999975421 124455556666666655 3458889999876666655 35544
Q ss_pred HHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624 128 SLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 164 (174)
Q Consensus 128 ~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 164 (174)
.+... ..++++|+||+|..++. ..+.+.++.
T Consensus 187 ~ld~~-----~~rti~ViTK~D~~~~~-~~~~~~~~~ 217 (240)
T smart00053 187 EVDPQ-----GERTIGVITKLDLMDEG-TDARDILEN 217 (240)
T ss_pred HHHHc-----CCcEEEEEECCCCCCcc-HHHHHHHhC
Confidence 44433 26999999999998764 335555555
No 128
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.66 E-value=2.2e-15 Score=103.71 Aligned_cols=115 Identities=15% Similarity=0.152 Sum_probs=72.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc-ccccccCCCCcceeeEE--EEEEE--eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRR-AFKSRASSSGVTSTCEM--QRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~-~~~~~~~~~~~t~~~~~--~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+|+++|++|+|||||++++.... .+... ...|..... ..... .....+.+|||||... ...
T Consensus 2 ki~vvG~~~~GKtsl~~~l~~~~~~~~~~---~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~ 67 (164)
T cd04101 2 RCAVVGDPAVGKTAFVQMFHSNGAVFPKN---YLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQEL-----------YSD 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCcCcc---CCCceEEEEEEEEEEeCCCCEEEEEEEECCCHHH-----------HHH
Confidence 78999999999999999998642 12111 112222111 12222 1235789999999643 223
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.......++|++++|+|.++.-+... ..|++.+.... ...|+++|.||+|+...
T Consensus 68 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 68 MVSNYWESPSVFILVYDVSNKASFENCSRWVNKVRTAS---KHMPGVLVGNKMDLADK 122 (164)
T ss_pred HHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccccc
Confidence 33445678899999999985432222 44555444432 22689999999998654
No 129
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.65 E-value=4e-15 Score=106.77 Aligned_cols=118 Identities=18% Similarity=0.120 Sum_probs=75.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEeC--CcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
..+|+++|++|+|||||++.+++...... ...|..... ..+.... ...+.++||||... +.
T Consensus 2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~----~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~ 66 (211)
T cd04111 2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEV----SDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQER-----------FR 66 (211)
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCC----CCceeceEEEEEEEEECCCCEEEEEEEeCCcchh-----------HH
Confidence 37899999999999999999998663222 112222222 2222212 24678999999764 33
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......+..+|++++|+|.+++-+... ..+++.+.+.... ...+++++.||+|+...
T Consensus 67 ~~~~~~~~~~d~iilv~D~~~~~Sf~~l~~~~~~i~~~~~~-~~~~iilvgNK~Dl~~~ 124 (211)
T cd04111 67 SITRSYYRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQP-HRPVFILVGHKCDLESQ 124 (211)
T ss_pred HHHHHHhcCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCeEEEEEEccccccc
Confidence 333456678899999999985433333 4555555544322 12467899999998753
No 130
>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]
Probab=99.65 E-value=2.4e-15 Score=110.59 Aligned_cols=145 Identities=20% Similarity=0.170 Sum_probs=101.4
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHH
Q 030624 11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFV 90 (174)
Q Consensus 11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~ 90 (174)
+.++...- ..++++|-++||||||+|+|....+ ..+ .....|....+..+.+.+...+.+-|.||+.+....+.-+
T Consensus 189 ~~lELKsi--advGLVG~PNAGKSTLL~als~AKp-kVa-~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGl 264 (366)
T KOG1489|consen 189 IELELKSI--ADVGLVGFPNAGKSTLLNALSRAKP-KVA-HYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGL 264 (366)
T ss_pred EEEEeeee--cccceecCCCCcHHHHHHHhhccCC-ccc-ccceeeeccccceeeccccceeEeccCccccccccccCcc
Confidence 33444443 5589999999999999999998775 232 3344555555556666455569999999999999899999
Q ss_pred HHHHHHHHHhccCCceEEEEEEeCCCC--CCHHH--HHHHHHHHHHHhhh-hcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624 91 GKEIVKCIGMAKDGIHAVLVVFSVRSR--FSQEE--EAALHSLQTLFGKK-IFDYMIVVFTGGDELEDNDETLEDYLGR 164 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~il~v~~~~~~--~~~~~--~~~l~~l~~~~~~~-~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 164 (174)
..++++.+..+ +.++||+|++.. .++.+ +.....+..+ .+. ..+|.++|.||+|..+.+...+.++.+.
T Consensus 265 G~~FLrHiER~----~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~y-ek~L~~rp~liVaNKiD~~eae~~~l~~L~~~ 338 (366)
T KOG1489|consen 265 GYKFLRHIERC----KGLLFVVDLSGKQLRNPWQQLQLLIEELELY-EKGLADRPALIVANKIDLPEAEKNLLSSLAKR 338 (366)
T ss_pred cHHHHHHHHhh----ceEEEEEECCCcccCCHHHHHHHHHHHHHHH-hhhhccCceEEEEeccCchhHHHHHHHHHHHH
Confidence 99999998877 999999999843 14443 2223333332 222 3468999999999976553444555554
No 131
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.65 E-value=3.4e-16 Score=102.29 Aligned_cols=116 Identities=20% Similarity=0.173 Sum_probs=68.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc--cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFK--SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
+|+++|+.|+|||||+++|++..... ........+.......... ....+.++|++|..... ....
T Consensus 1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~g~~~~~-----------~~~~ 68 (119)
T PF08477_consen 1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDG-DRQSLQFWDFGGQEEFY-----------SQHQ 68 (119)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETT-EEEEEEEEEESSSHCHH-----------CTSH
T ss_pred CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecC-CceEEEEEecCccceec-----------cccc
Confidence 68999999999999999999877541 1111222233222222211 22357899999986521 1111
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGD 149 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D 149 (174)
.....+|++++|+|.+++-+... ..++.++..........|+++|.||.|
T Consensus 69 ~~~~~~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 69 FFLKKADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp HHHHHSCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred chhhcCcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 12344599999999984432333 344555555543333469999999998
No 132
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.65 E-value=4.5e-15 Score=123.06 Aligned_cols=117 Identities=16% Similarity=0.210 Sum_probs=84.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+.++|+++|+.++|||||+++|.+...... ...+.|.......+.+ .+..+.||||||+.++. ..
T Consensus 288 ~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~~--e~~GIT~~iga~~v~~-~~~~ItfiDTPGhe~F~-----------~m 353 (787)
T PRK05306 288 PRPPVVTIMGHVDHGKTSLLDAIRKTNVAAG--EAGGITQHIGAYQVET-NGGKITFLDTPGHEAFT-----------AM 353 (787)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhCCcccc--ccCceeeeccEEEEEE-CCEEEEEEECCCCccch-----------hH
Confidence 3458999999999999999999987654322 2234555555556666 56789999999988732 22
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+..+|++++|++++++....+.+.+..+... . .|+++++||+|+...
T Consensus 354 ~~rga~~aDiaILVVdAddGv~~qT~e~i~~a~~~---~--vPiIVviNKiDl~~a 404 (787)
T PRK05306 354 RARGAQVTDIVVLVVAADDGVMPQTIEAINHAKAA---G--VPIIVAINKIDKPGA 404 (787)
T ss_pred HHhhhhhCCEEEEEEECCCCCCHhHHHHHHHHHhc---C--CcEEEEEECcccccc
Confidence 22345667999999999878777777666544432 2 589999999999654
No 133
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.65 E-value=4.7e-15 Score=104.61 Aligned_cols=115 Identities=17% Similarity=0.148 Sum_probs=78.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|..|+|||||+..+...... .. .....+.......+.. ++ ..+.+|||+|... +....
T Consensus 7 ~KivviG~~~vGKTsll~~~~~~~~~-~~-~~~t~~~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~l~ 72 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGSTE-SP-YGYNMGIDYKTTTILL-DGRRVKLQLWDTSGQGR-----------FCTIF 72 (189)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCC-CC-CCCcceeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence 78999999999999999999875421 11 1111222222223333 33 4678999999875 33444
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
...+..+|++++|+|.+++.+... ..|++.+.+.. . ..|+++|.||.|+..
T Consensus 73 ~~~~~~ad~illVfD~t~~~Sf~~~~~w~~~i~~~~-~--~~piilVGNK~DL~~ 124 (189)
T cd04121 73 RSYSRGAQGIILVYDITNRWSFDGIDRWIKEIDEHA-P--GVPKILVGNRLHLAF 124 (189)
T ss_pred HHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccchh
Confidence 456788999999999986555544 56777775543 2 369999999999864
No 134
>PLN03108 Rab family protein; Provisional
Probab=99.65 E-value=5.1e-15 Score=106.18 Aligned_cols=117 Identities=15% Similarity=0.139 Sum_probs=73.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|++|+|||||++.+++...........+ .......... .+ ..+.+|||||... +....
T Consensus 7 ~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~--~~~~~~~i~~-~~~~i~l~l~Dt~G~~~-----------~~~~~ 72 (210)
T PLN03108 7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG--VEFGARMITI-DNKPIKLQIWDTAGQES-----------FRSIT 72 (210)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcc--ceEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHHHH
Confidence 7899999999999999999998653222111111 1111112222 22 3578999999764 22333
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.++.-+... ..++..+...... ..|++++.||+|+...
T Consensus 73 ~~~~~~ad~~vlv~D~~~~~s~~~l~~~~~~~~~~~~~--~~piiiv~nK~Dl~~~ 126 (210)
T PLN03108 73 RSYYRGAAGALLVYDITRRETFNHLASWLEDARQHANA--NMTIMLIGNKCDLAHR 126 (210)
T ss_pred HHHhccCCEEEEEEECCcHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccCccc
Confidence 445667899999999984332222 3455544443222 2689999999998654
No 135
>PLN03118 Rab family protein; Provisional
Probab=99.65 E-value=9.5e-15 Score=104.82 Aligned_cols=119 Identities=13% Similarity=0.113 Sum_probs=73.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..+|+++|++|+|||||++++++.... . .....+.......+.... ...+.++||||... +....
T Consensus 14 ~~kv~ivG~~~vGKTsli~~l~~~~~~-~--~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~-----------~~~~~ 79 (211)
T PLN03118 14 SFKILLIGDSGVGKSSLLVSFISSSVE-D--LAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQER-----------FRTLT 79 (211)
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCC-C--cCCCceeEEEEEEEEECCEEEEEEEEECCCchh-----------hHHHH
Confidence 379999999999999999999986531 1 111111222222333311 24678999999876 22233
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++..+|++++|+|.++.-+.... .+...+... ......++++|.||+|+...
T Consensus 80 ~~~~~~~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~-~~~~~~~~ilv~NK~Dl~~~ 135 (211)
T PLN03118 80 SSYYRNAQGIILVYDVTRRETFTNLSDVWGKEVELY-STNQDCVKMLVGNKVDRESE 135 (211)
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-cCCCCCCEEEEEECcccccc
Confidence 3456778999999999854333322 233333322 11122578999999998654
No 136
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.65 E-value=3.9e-15 Score=102.42 Aligned_cols=116 Identities=19% Similarity=0.196 Sum_probs=73.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+|+++|.+|+|||||++.++......... .|. ......... ++ ..+.++||||..... ..
T Consensus 2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~----~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~-----------~~ 65 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTFIEKYD----PTIEDFYRKEIEV-DSSPSVLEILDTAGTEQFA-----------SM 65 (163)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCCCC----CchhheEEEEEEE-CCEEEEEEEEECCCccccc-----------ch
Confidence 589999999999999999988765432211 111 111222222 22 357789999987632 22
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+.++|++++|+|.++.-+... ..+...+.+... ....|+++|.||+|+...
T Consensus 66 ~~~~~~~ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piviv~nK~Dl~~~ 121 (163)
T cd04176 66 RDLYIKNGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKG-YEKVPIILVGNKVDLESE 121 (163)
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECccchhc
Confidence 2234567899999999985433232 455555555422 123689999999998643
No 137
>PTZ00369 Ras-like protein; Provisional
Probab=99.64 E-value=5.7e-15 Score=104.25 Aligned_cols=119 Identities=22% Similarity=0.185 Sum_probs=74.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..+++++|.+|+|||||++.+.+.........+.+.+. ....... ....+.+|||||..+ +....
T Consensus 5 ~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~---~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~l~ 70 (189)
T PTZ00369 5 EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSY---RKQCVIDEETCLLDILDTAGQEE-----------YSAMR 70 (189)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEE---EEEEEECCEEEEEEEEeCCCCcc-----------chhhH
Confidence 47999999999999999999997653222111111111 1122221 123567899999876 22233
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++..+|++++|+|.+++-+... ..+.+.+.+.... ...|++++.||+|+...
T Consensus 71 ~~~~~~~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~Dl~~~ 125 (189)
T PTZ00369 71 DQYMRTGQGFLCVYSITSRSSFEEIASFREQILRVKDK-DRVPMILVGNKCDLDSE 125 (189)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 345667899999999985433222 4555555554322 13589999999998543
No 138
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.64 E-value=1.9e-14 Score=98.90 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=73.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHH---HHHH
Q 030624 23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV---KCIG 99 (174)
Q Consensus 23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~---~~~~ 99 (174)
|+++|++|+|||||+|.|++...........+.|..... .. ....+.++||||+....... .....+. ....
T Consensus 2 i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~--~~--~~~~~~~~D~~g~~~~~~~~-~~~~~~~~~~~~~~ 76 (170)
T cd01876 2 IAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINF--FN--VNDKFRLVDLPGYGYAKVSK-EVKEKWGKLIEEYL 76 (170)
T ss_pred EEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEE--EE--ccCeEEEecCCCccccccCH-HHHHHHHHHHHHHH
Confidence 789999999999999999943322111122222332222 22 23488999999987643311 1111122 1122
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......+.+++++|............++.+.... .|+++++||+|+..+
T Consensus 77 ~~~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~-----~~vi~v~nK~D~~~~ 125 (170)
T cd01876 77 ENRENLKGVVLLIDSRHGPTEIDLEMLDWLEELG-----IPFLVVLTKADKLKK 125 (170)
T ss_pred HhChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcC-----CCEEEEEEchhcCCh
Confidence 2334568899999987555555566666655531 589999999999754
No 139
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.64 E-value=4.2e-15 Score=102.38 Aligned_cols=117 Identities=15% Similarity=0.134 Sum_probs=72.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|.+|+|||||+++++....... ..+|.... ........ ...+.++||||... +....
T Consensus 2 ~ki~~~G~~~~GKTsli~~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIFVEK----YDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQ-----------FTAMR 66 (164)
T ss_pred cEEEEECCCCCCHHHHHHHHHhCCCCcc----cCCcchheEEEEEEECCEEEEEEEEECCCccc-----------chhHH
Confidence 5899999999999999999886542111 11122111 12233311 23567999999875 22333
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.++.-+... ..++..+..... ....|++++.||+|+...
T Consensus 67 ~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 121 (164)
T cd04175 67 DLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKD-TEDVPMILVGNKCDLEDE 121 (164)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECCcchhc
Confidence 345667799999999874433332 445555544322 123699999999999654
No 140
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.64 E-value=4.5e-15 Score=104.85 Aligned_cols=116 Identities=21% Similarity=0.209 Sum_probs=73.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+|+++|.+|+|||||++.++..... .. ...|.... ...... .+. .+.+|||||..+ +....
T Consensus 1 ki~ivG~~~vGKTsli~~l~~~~f~-~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~~ 64 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNHFV-ET---YDPTIEDSYRKQVVV-DGQPCMLEVLDTAGQEE-----------YTALR 64 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-cc---CCCchHhhEEEEEEE-CCEEEEEEEEECCCchh-----------hHHHH
Confidence 4799999999999999999865431 11 11111111 112222 333 478899999765 22333
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh-hhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.++..+... ..+++.+...... ....|+++|.||+|+...
T Consensus 65 ~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~ 121 (190)
T cd04144 65 DQWIREGEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE 121 (190)
T ss_pred HHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc
Confidence 345677899999999985443333 4566666554321 123689999999998643
No 141
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.64 E-value=2e-15 Score=107.74 Aligned_cols=115 Identities=14% Similarity=0.154 Sum_probs=71.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE---eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.|+++|++|||||||++.|.+....... . +.......... .++..+.++||||..+ ++..+
T Consensus 2 ~vll~G~~~sGKTsL~~~l~~~~~~~t~-~----s~~~~~~~~~~~~~~~~~~~~l~D~pG~~~-----------~~~~~ 65 (203)
T cd04105 2 TVLLLGPSDSGKTALFTKLTTGKYRSTV-T----SIEPNVATFILNSEGKGKKFRLVDVPGHPK-----------LRDKL 65 (203)
T ss_pred eEEEEcCCCCCHHHHHHHHhcCCCCCcc-C----cEeecceEEEeecCCCCceEEEEECCCCHH-----------HHHHH
Confidence 6899999999999999999987532221 1 11112222211 1356789999999885 33333
Q ss_pred HhccCCc-eEEEEEEeCCCCCCHHHHHHHHHHHHHHh----hhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGI-HAVLVVFSVRSRFSQEEEAALHSLQTLFG----KKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~-~~il~v~~~~~~~~~~~~~~l~~l~~~~~----~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+ ++++||+|+.+.. .......+++...+. .....|++++.||+|+...
T Consensus 66 ~~~~~~~~~~vV~VvD~~~~~-~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a 124 (203)
T cd04105 66 LETLKNSAKGIVFVVDSATFQ-KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA 124 (203)
T ss_pred HHHHhccCCEEEEEEECccch-hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence 3344555 9999999998432 222222233322221 1123699999999998764
No 142
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.64 E-value=4.2e-15 Score=105.09 Aligned_cols=113 Identities=20% Similarity=0.200 Sum_probs=72.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
+|+++|++|+|||||++++++.... .+. ...|....+ ..... .+ ..+.+|||||... +...
T Consensus 2 ki~vvG~~~vGKSsLi~~~~~~~~~-~~~--~~~t~~~~~~~~~~~~-~~~~~~l~i~D~~G~~~-----------~~~~ 66 (193)
T cd04118 2 KVVMLGKESVGKTSLVERYVHHRFL-VGP--YQNTIGAAFVAKRMVV-GERVVTLGIWDTAGSER-----------YEAM 66 (193)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCcC-CcC--cccceeeEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhhh
Confidence 7899999999999999999986532 111 112222211 12222 23 3467999999765 2222
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
....+.++|++++|+|.++.-+... ..+++.+.... ...|+++|.||+|+..
T Consensus 67 ~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~ 119 (193)
T cd04118 67 SRIYYRGAKAAIVCYDLTDSSSFERAKFWVKELQNLE---EHCKIYLCGTKSDLIE 119 (193)
T ss_pred hHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHhcC---CCCCEEEEEEcccccc
Confidence 3345678899999999984422222 35565555431 1368999999999864
No 143
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.64 E-value=8.7e-15 Score=102.95 Aligned_cols=115 Identities=14% Similarity=0.076 Sum_probs=73.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+|+++|++|+|||||++.+++...... ...|...... .+... ....+.+|||||..+ +...
T Consensus 1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~----~~~t~~~~~~~~i~~~~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (187)
T cd04132 1 KKIVVVGDGGCGKTCLLIVYSQGKFPEE----YVPTVFENYVTNIQGPNGKIIELALWDTAGQEE-----------YDRL 65 (187)
T ss_pred CeEEEECCCCCCHHHHHHHHHhCcCCCC----CCCeeeeeeEEEEEecCCcEEEEEEEECCCchh-----------HHHH
Confidence 3789999999999999999998764322 1122222211 22221 123578999999764 2333
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+.++|++++|+|.+++.+... ..|+..+... .. ..|+++|.||.|+...
T Consensus 66 ~~~~~~~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~-~~--~~piilv~nK~Dl~~~ 120 (187)
T cd04132 66 RPLSYPDVDVLLICYAVDNPTSLDNVEDKWFPEVNHF-CP--GTPIMLVGLKTDLRKD 120 (187)
T ss_pred HHHhCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHh-CC--CCCEEEEEeChhhhhC
Confidence 3445788999999999985443333 2344444432 12 2599999999998653
No 144
>PLN03127 Elongation factor Tu; Provisional
Probab=99.64 E-value=5.8e-15 Score=116.32 Aligned_cols=118 Identities=16% Similarity=0.144 Sum_probs=83.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 84 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~ 84 (174)
+..+|+++|+.++|||||+++|++.... ...+...+.|.......+.+ ++..+.++||||+.+
T Consensus 60 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~~iDtPGh~~-- 136 (447)
T PLN03127 60 PHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYET-AKRHYAHVDCPGHAD-- 136 (447)
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcC-CCeEEEEEECCCccc--
Confidence 3478999999999999999999743100 00112245566665555554 556889999999875
Q ss_pred CChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCCC
Q 030624 85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELED 153 (174)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~~ 153 (174)
+..........+|++++|+|+.++....+.+.+..+.... .| +++++||+|+...
T Consensus 137 ---------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~g-----ip~iIvviNKiDlv~~ 192 (447)
T PLN03127 137 ---------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVG-----VPSLVVFLNKVDVVDD 192 (447)
T ss_pred ---------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcC-----CCeEEEEEEeeccCCH
Confidence 2222223344689999999998788888888887766542 35 5788999999853
No 145
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.63 E-value=1.2e-14 Score=104.79 Aligned_cols=112 Identities=24% Similarity=0.179 Sum_probs=74.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+|+++|.+|+|||||++.+++...... ..|....+....+ ....+.+|||||.... .......
T Consensus 2 KIvivG~~~vGKTSLi~r~~~~~f~~~-----~~Tig~~~~~~~~-~~~~l~iwDt~G~e~~-----------~~l~~~~ 64 (220)
T cd04126 2 KVVLLGDMNVGKTSLLHRYMERRFKDT-----VSTVGGAFYLKQW-GPYNISIWDTAGREQF-----------HGLGSMY 64 (220)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCC-----CCccceEEEEEEe-eEEEEEEEeCCCcccc-----------hhhHHHH
Confidence 689999999999999999998764211 1233222332333 4456899999998762 2222335
Q ss_pred cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+..+|++++|+|.+++-+... ..++..+.+..... .|+++|.||+|+..
T Consensus 65 ~~~ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~ 114 (220)
T cd04126 65 CRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTE 114 (220)
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccccc
Confidence 678899999999986544444 23444444432222 58999999999865
No 146
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.63 E-value=3.4e-15 Score=107.55 Aligned_cols=115 Identities=20% Similarity=0.295 Sum_probs=77.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccc----c----------cCCCCcceeeEEEEEEEe---------CCcEEEEEeC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKS----R----------ASSSGVTSTCEMQRTVLK---------DGQVVNVIDT 77 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~----~----------~~~~~~t~~~~~~~~~~~---------~~~~~~~iDt 77 (174)
+.|+++|+.++|||||+.+|+....... + +...+.|.........+. ++..+.++||
T Consensus 1 RNvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDT 80 (222)
T cd01885 1 RNICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDS 80 (222)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECC
Confidence 4789999999999999999975431100 0 111233433333333342 1457889999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 78 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
||..+ +......++..+|++++|+|+.++....++..++..... . .|+++++||+|+.
T Consensus 81 PG~~~-----------f~~~~~~~l~~aD~~ilVvD~~~g~~~~t~~~l~~~~~~---~--~p~ilviNKiD~~ 138 (222)
T cd01885 81 PGHVD-----------FSSEVTAALRLCDGALVVVDAVEGVCVQTETVLRQALKE---R--VKPVLVINKIDRL 138 (222)
T ss_pred CCccc-----------cHHHHHHHHHhcCeeEEEEECCCCCCHHHHHHHHHHHHc---C--CCEEEEEECCCcc
Confidence 99987 333334455667999999999888877777666554432 2 5899999999986
No 147
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.63 E-value=1e-14 Score=121.25 Aligned_cols=123 Identities=20% Similarity=0.188 Sum_probs=81.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~--~~~~~~~~~~ 97 (174)
..+|+++|.+|+|||||+|+|+|.... .+ ...+.|.+.......+ ++..+.++||||..+..... ....+.+.+.
T Consensus 3 ~~~IaLvG~pNvGKSTLfN~Ltg~~~~-vg-n~pGvTve~k~g~~~~-~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~ 79 (772)
T PRK09554 3 KLTIGLIGNPNSGKTTLFNQLTGARQR-VG-NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (772)
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCCceEeeEEEEEEc-CceEEEEEECCCccccccccccccHHHHHHHH
Confidence 468999999999999999999997642 33 3355666655555555 67789999999998754311 1112222211
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......+|++++|+|++ .+... ..+...+.+. ..|+++++||+|+.+.
T Consensus 80 -~l~~~~aD~vI~VvDat-~ler~-l~l~~ql~e~-----giPvIvVlNK~Dl~~~ 127 (772)
T PRK09554 80 -YILSGDADLLINVVDAS-NLERN-LYLTLQLLEL-----GIPCIVALNMLDIAEK 127 (772)
T ss_pred -HHhccCCCEEEEEecCC-cchhh-HHHHHHHHHc-----CCCEEEEEEchhhhhc
Confidence 11346789999999998 43332 2233333332 2699999999998754
No 148
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.63 E-value=5.7e-15 Score=121.52 Aligned_cols=118 Identities=15% Similarity=0.222 Sum_probs=81.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe---CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
+.++|+++|+.++|||||+++|++...... ...+.|.........+. .+..+.+|||||+.. +.
T Consensus 243 r~p~V~IvGhvdvGKTSLld~L~~~~~~~~--e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGhe~-----------F~ 309 (742)
T CHL00189 243 RPPIVTILGHVDHGKTTLLDKIRKTQIAQK--EAGGITQKIGAYEVEFEYKDENQKIVFLDTPGHEA-----------FS 309 (742)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhccCccc--cCCccccccceEEEEEEecCCceEEEEEECCcHHH-----------HH
Confidence 447999999999999999999987654322 12233333333333332 246899999999864 33
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
..+...+..+|++++|++++++....+.+.+..+... . .|+++++||+|+...+
T Consensus 310 ~mr~rg~~~aDiaILVVDA~dGv~~QT~E~I~~~k~~---~--iPiIVViNKiDl~~~~ 363 (742)
T CHL00189 310 SMRSRGANVTDIAILIIAADDGVKPQTIEAINYIQAA---N--VPIIVAINKIDKANAN 363 (742)
T ss_pred HHHHHHHHHCCEEEEEEECcCCCChhhHHHHHHHHhc---C--ceEEEEEECCCccccC
Confidence 3333455677999999999877777777666554332 2 5899999999997653
No 149
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.63 E-value=8.2e-15 Score=101.48 Aligned_cols=120 Identities=16% Similarity=0.039 Sum_probs=73.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..+|+++|++|+|||||++.+++....... ....+........... ....+.++||||... +....
T Consensus 5 ~~ki~vvG~~~~GKTsli~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~i~D~~G~~~-----------~~~~~ 71 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEVDGHFVTLQIWDTAGQER-----------FRSLR 71 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCCcCc--CCceeeEEEEEEEEECCeEEEEEEEeCCChHH-----------HHHhH
Confidence 478999999999999999999876532221 1111111111222231 123568899999654 33334
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE 152 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~ 152 (174)
...+..+|++++|++.+++-+... ..+...+...... ....|++++.||+|+..
T Consensus 72 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 128 (170)
T cd04116 72 TPFYRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPE 128 (170)
T ss_pred HHHhcCCCEEEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECccccc
Confidence 445678899999999884432222 3444444443221 11258999999999864
No 150
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.63 E-value=9.5e-15 Score=118.58 Aligned_cols=116 Identities=22% Similarity=0.284 Sum_probs=84.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
+|+++|+.++|||||+++|++...-. ......+.|....+..+.+ .+..+.+||+||..+ +.+.+..
T Consensus 2 ~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~-~~~~v~~iDtPGhe~-----------f~~~~~~ 69 (581)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPL-PDYRLGFIDVPGHEK-----------FISNAIA 69 (581)
T ss_pred EEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEe-CCEEEEEEECCCHHH-----------HHHHHHh
Confidence 68999999999999999999854110 1122345666666666666 557899999999754 4444445
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|++++....+.+.+..+... +. +++++|+||+|+.+.
T Consensus 70 g~~~aD~aILVVDa~~G~~~qT~ehl~il~~l-gi---~~iIVVlNK~Dlv~~ 118 (581)
T TIGR00475 70 GGGGIDAALLVVDADEGVMTQTGEHLAVLDLL-GI---PHTIVVITKADRVNE 118 (581)
T ss_pred hhccCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEECCCCCCH
Confidence 66788999999999877777887777665443 21 249999999999865
No 151
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.63 E-value=9.7e-15 Score=118.49 Aligned_cols=116 Identities=19% Similarity=0.270 Sum_probs=85.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc-c-ccc------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRA-F-KSR------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 86 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~-~-~~~------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~ 86 (174)
+.|+++|+.++|||||+++|+.... + ..+ ....+.|.......+.| ++..+.+|||||+.+
T Consensus 2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~-~~~kinlIDTPGh~D---- 76 (594)
T TIGR01394 2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRY-NGTKINIVDTPGHAD---- 76 (594)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEE-CCEEEEEEECCCHHH----
Confidence 5799999999999999999985321 1 111 11235677777777788 788999999999876
Q ss_pred hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+...+...+..+|++++|+|+.++....++.++..+... . .|.++++||+|+...
T Consensus 77 -------F~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~l~~a~~~---~--ip~IVviNKiD~~~a 131 (594)
T TIGR01394 77 -------FGGEVERVLGMVDGVLLLVDASEGPMPQTRFVLKKALEL---G--LKPIVVINKIDRPSA 131 (594)
T ss_pred -------HHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHHHHHHHHC---C--CCEEEEEECCCCCCc
Confidence 222233344566999999999877777777777666553 2 578999999998654
No 152
>PRK12735 elongation factor Tu; Reviewed
Probab=99.63 E-value=7.2e-15 Score=114.59 Aligned_cols=118 Identities=17% Similarity=0.194 Sum_probs=81.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 84 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~ 84 (174)
+..+++++|+.++|||||+++|++.... ...+...+.|.......+.+ ++..+.++||||+.+
T Consensus 11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~-~~~~i~~iDtPGh~~-- 87 (396)
T PRK12735 11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYET-ANRHYAHVDCPGHAD-- 87 (396)
T ss_pred CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcC-CCcEEEEEECCCHHH--
Confidence 4488999999999999999999862110 01112345565554444444 566789999999753
Q ss_pred CChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCCC
Q 030624 85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELED 153 (174)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~~ 153 (174)
+.......+..+|++++|+|+.++....+.+.+..+... + .| +++++||+|+...
T Consensus 88 ---------f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~-g----i~~iivvvNK~Dl~~~ 143 (396)
T PRK12735 88 ---------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV-G----VPYIVVFLNKCDMVDD 143 (396)
T ss_pred ---------HHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHc-C----CCeEEEEEEecCCcch
Confidence 334444556688999999999877777777777665543 2 35 4568999999753
No 153
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.63 E-value=2e-14 Score=100.00 Aligned_cols=116 Identities=17% Similarity=0.149 Sum_probs=76.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+|+++|..|+|||||++.+.+....... .+|..... ..... ++ ..+.++||||..+ +...
T Consensus 3 ~ki~vvG~~~vGKTsL~~~~~~~~f~~~~----~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~l 66 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSFPDYH----DPTIEDAYKQQARI-DNEPALLDILDTAGQAE-----------FTAM 66 (172)
T ss_pred eEEEEECCCCCcHHHHHHHHHhCCCCCCc----CCcccceEEEEEEE-CCEEEEEEEEeCCCchh-----------hHHH
Confidence 68999999999999999998876532211 11211111 12222 23 4578999999875 3334
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...++..+|++++|+|.+++.+... ..+.+.+.+... ....|+++|.||+|+...
T Consensus 67 ~~~~~~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~-~~~~piilvgNK~Dl~~~ 122 (172)
T cd04141 67 RDQYMRCGEGFIICYSVTDRHSFQEASEFKKLITRVRL-TEDIPLVLVGNKVDLESQ 122 (172)
T ss_pred hHHHhhcCCEEEEEEECCchhHHHHHHHHHHHHHHhcC-CCCCCEEEEEEChhhhhc
Confidence 4445677899999999986655555 345555555422 223699999999998643
No 154
>PRK12736 elongation factor Tu; Reviewed
Probab=99.63 E-value=2.5e-15 Score=117.06 Aligned_cols=118 Identities=15% Similarity=0.194 Sum_probs=82.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 84 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~ 84 (174)
+..+++++|+.++|||||+++|++..... ..+...+.|.......+.. ++..+.++||||+.+
T Consensus 11 ~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~-~~~~i~~iDtPGh~~-- 87 (394)
T PRK12736 11 PHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYET-EKRHYAHVDCPGHAD-- 87 (394)
T ss_pred CeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecC-CCcEEEEEECCCHHH--
Confidence 34889999999999999999998742110 1112345566554444433 566889999999753
Q ss_pred CChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCCC
Q 030624 85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELED 153 (174)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~~ 153 (174)
+..........+|++++|+|+.++....+.+.+..+... + .| +++++||+|+...
T Consensus 88 ---------f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~-g----~~~~IvviNK~D~~~~ 143 (394)
T PRK12736 88 ---------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQV-G----VPYLVVFLNKVDLVDD 143 (394)
T ss_pred ---------HHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHc-C----CCEEEEEEEecCCcch
Confidence 223333344677999999999878888888888776654 2 34 6789999999754
No 155
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.63 E-value=1.1e-14 Score=100.74 Aligned_cols=117 Identities=21% Similarity=0.172 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+++++|.+|+|||||++++.+....... ..|.... .....+. ....+.+|||||..+. ....
T Consensus 2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~~ 66 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVFIESY----DPTIEDSYRKQVEIDGRQCDLEILDTAGTEQF-----------TAMR 66 (168)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcchheEEEEEEECCEEEEEEEEeCCCcccc-----------hhhh
Confidence 57999999999999999999876532221 1111111 1222221 1246789999998763 2233
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..++++++|++.+++-+... ..+.+.+.+.... ...|++++.||.|+...
T Consensus 67 ~~~~~~~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~-~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 67 ELYIKSGQGFLLVYSVTSEASLNELGELREQVLRIKDS-DNVPMVLVGNKADLEDD 121 (168)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCCEEEEEEChhcccc
Confidence 334566799999999885433332 4455555543322 23689999999998654
No 156
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.62 E-value=1e-14 Score=114.80 Aligned_cols=119 Identities=20% Similarity=0.261 Sum_probs=82.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccc--------------c---------------cCCCCcceeeEEEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLKDG 69 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~ 69 (174)
+..+++++|+.++|||||++.|+.....-. | +...+.|.......+.+ ++
T Consensus 5 ~~~~v~iiGh~d~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~-~~ 83 (425)
T PRK12317 5 PHLNLAVIGHVDHGKSTLVGRLLYETGAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFET-DK 83 (425)
T ss_pred CEEEEEEECCCCCChHHHHHHHHHHcCCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEec-CC
Confidence 348899999999999999999984321100 1 11346677776666666 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
..+.++||||+.+. .+.....+..+|++++|+|+++ .+...+...+..+... +. +++++++||
T Consensus 84 ~~i~liDtpG~~~~-----------~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~-~~---~~iivviNK 148 (425)
T PRK12317 84 YYFTIVDCPGHRDF-----------VKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTL-GI---NQLIVAINK 148 (425)
T ss_pred eEEEEEECCCcccc-----------hhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHc-CC---CeEEEEEEc
Confidence 88999999997652 2222233567899999999987 5656666666554432 21 468999999
Q ss_pred cCCCCC
Q 030624 148 GDELED 153 (174)
Q Consensus 148 ~D~~~~ 153 (174)
+|+...
T Consensus 149 ~Dl~~~ 154 (425)
T PRK12317 149 MDAVNY 154 (425)
T ss_pred cccccc
Confidence 999753
No 157
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.62 E-value=6.3e-15 Score=101.96 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+|+++|++|+|||||++++++........... .......... .....+.++||||..... ....
T Consensus 1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~D~~g~~~~~-----------~~~~ 66 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTV---FDNYSATVTVDGKQVNLGLWDTAGQEEYD-----------RLRP 66 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCce---eeeeEEEEEECCEEEEEEEEeCCCccccc-----------ccch
Confidence 378999999999999999999876422211111 1111111111 123468899999988631 1112
Q ss_pred hccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
..+..+|++++|+|.+++-+... ..++..+..... ..|+++|+||+|+....
T Consensus 67 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 67 LSYPNTDVFLICFSVDSPSSFENVKTKWIPEIRHYCP---NVPIILVGTKIDLRDDE 120 (171)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC---CCCEEEEEccHHhhhch
Confidence 24467899999999984333222 345555554432 36999999999987663
No 158
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.62 E-value=8.9e-15 Score=99.96 Aligned_cols=116 Identities=18% Similarity=0.168 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
+|+++|++|+|||||++++++.... ..... .+.......... . ...+.++|+||... +.....
T Consensus 1 ki~i~G~~~~GKTsli~~l~~~~~~-~~~~~--~~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~~ 65 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTFV-EEYDP--TIEDSYRKTIVV-DGETYTLDILDTAGQEE-----------FSAMRD 65 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCC-cCcCC--ChhHeEEEEEEE-CCEEEEEEEEECCChHH-----------HHHHHH
Confidence 4899999999999999999986532 22111 111112222222 2 24578999999765 222333
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+|++++|+|.++.-+... ..+...+.+.... ...|+++++||+|+...
T Consensus 66 ~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~ 119 (160)
T cd00876 66 LYIRQGDGFILVYSITDRESFEEIKGYREQILRVKDD-EDIPIVLVGNKCDLENE 119 (160)
T ss_pred HHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCccccc
Confidence 34566799999999874322222 4444445544321 23699999999999763
No 159
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=99.62 E-value=1.6e-14 Score=107.41 Aligned_cols=128 Identities=20% Similarity=0.269 Sum_probs=76.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEEEEe-C--CcEEEEEeCCCCCCCCCChHH-
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRTVLK-D--GQVVNVIDTPGLFDFSAGSEF- 89 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~~~~-~--~~~~~~iDtpG~~~~~~~~~~- 89 (174)
..+++++|.+|+|||||||+|++......... ....+........... . ...+.++||||+.+.......
T Consensus 4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~ 83 (281)
T PF00735_consen 4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW 83 (281)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence 47899999999999999999999765433210 1111222222222221 2 236899999999975433211
Q ss_pred ------HHHHHHHHHHh---------ccCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 90 ------VGKEIVKCIGM---------AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 90 ------~~~~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+..++...+.. .-.++|++||+++++ .++.+.+.+.++.|.+.. ++|-|+.|+|.+.+
T Consensus 84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~~v------NvIPvIaKaD~lt~ 157 (281)
T PF00735_consen 84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSKRV------NVIPVIAKADTLTP 157 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTTTS------EEEEEESTGGGS-H
T ss_pred HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcccc------cEEeEEecccccCH
Confidence 12222222211 134689999999985 468899999988888764 89999999999986
No 160
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.62 E-value=1e-14 Score=102.35 Aligned_cols=116 Identities=16% Similarity=0.061 Sum_probs=78.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
...+|+++|..|+|||||++.++........ .+|..... ...... ....+.+|||+|... +..
T Consensus 4 ~~~KivvvGd~~vGKTsli~~~~~~~f~~~~----~pT~~~~~~~~~~~~~~~~~l~iwDtaG~e~-----------~~~ 68 (182)
T cd04172 4 VKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPY-----------YDN 68 (182)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCCCCCcc----CCceeeeeEEEEEECCEEEEEEEEECCCchh-----------hHh
Confidence 3478999999999999999999876532221 12221111 122221 124689999999765 333
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
....++.++|++++|+|.+++-+... ..|++.+.+.. . ..|+++|.||.|+..
T Consensus 69 ~~~~~~~~ad~~ilvyDit~~~Sf~~~~~~w~~~i~~~~-~--~~piilVgNK~DL~~ 123 (182)
T cd04172 69 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P--NTKMLLVGCKSDLRT 123 (182)
T ss_pred hhhhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C--CCCEEEEeEChhhhc
Confidence 34456789999999999986544444 46777776653 2 269999999999854
No 161
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.62 E-value=7.5e-15 Score=102.72 Aligned_cols=114 Identities=15% Similarity=0.047 Sum_probs=76.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|.+|+|||||++.+.+...... ..+|..... ..+... ....+.+|||+|... +....
T Consensus 2 ~Kiv~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~iwDt~G~~~-----------~~~~~ 66 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCYPET----YVPTVFENYTASFEIDEQRIELSLWDTSGSPY-----------YDNVR 66 (178)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCcCCCC----cCCceEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhcc
Confidence 5799999999999999999998753222 112221111 122221 224578999999765 22233
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
...+..+|++++|+|.+++-+... ..|++.+.+... ..|+++|.||+|+..
T Consensus 67 ~~~~~~a~~~ilvfdit~~~Sf~~~~~~w~~~i~~~~~---~~~iilVgnK~DL~~ 119 (178)
T cd04131 67 PLCYPDSDAVLICFDISRPETLDSVLKKWRGEIQEFCP---NTKVLLVGCKTDLRT 119 (178)
T ss_pred hhhcCCCCEEEEEEECCChhhHHHHHHHHHHHHHHHCC---CCCEEEEEEChhhhc
Confidence 346788999999999986655554 467777776532 258999999999853
No 162
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.62 E-value=1.5e-14 Score=103.01 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=78.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE--EEEEEEe------CCcEEEEEeCCCCCCCCCChHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLK------DGQVVNVIDTPGLFDFSAGSEFVGKE 93 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~------~~~~~~~iDtpG~~~~~~~~~~~~~~ 93 (174)
+|+++|.+|+|||||++.+++...... ...|..+. .....+. ....+.+|||+|...
T Consensus 2 KIvlvGd~gVGKTSLi~~~~~~~f~~~----~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~----------- 66 (202)
T cd04102 2 RVLVVGDSGVGKSSLVHLICKNQVLGR----PSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSES----------- 66 (202)
T ss_pred EEEEECCCCCCHHHHHHHHHcCCCCCC----CCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchh-----------
Confidence 689999999999999999998764322 12222222 1222221 123578999999876
Q ss_pred HHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHh-----------------hhhcCcEEEEEeCcCCCCC
Q 030624 94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-----------------KKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-----------------~~~~~~~~iv~tk~D~~~~ 153 (174)
+......++.++|++++|+|.+++-+... ..|++.+.+... .....|+++|.||.|+.+.
T Consensus 67 ~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~ 144 (202)
T cd04102 67 VKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPE 144 (202)
T ss_pred HHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhh
Confidence 44445557889999999999986544444 567766655321 0112599999999998653
No 163
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.62 E-value=1e-14 Score=102.42 Aligned_cols=111 Identities=14% Similarity=0.115 Sum_probs=73.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
+++++|..|+|||||++.+++...... ..+|....+ ..+.. ++ ..+.+|||+|... +...
T Consensus 2 Ki~vlG~~~vGKTsLi~~~~~~~f~~~----~~~T~g~~~~~~~i~~-~~~~~~l~iwDt~G~~~-----------~~~~ 65 (182)
T cd04128 2 KIGLLGDAQIGKTSLMVKYVEGEFDED----YIQTLGVNFMEKTISI-RGTEITFSIWDLGGQRE-----------FINM 65 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCC----CCCccceEEEEEEEEE-CCEEEEEEEEeCCCchh-----------HHHh
Confidence 689999999999999999987653221 112222222 22333 33 4579999999875 3334
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
...++..+|++++|+|.+++-+... ..|++.+....... .| ++|.||+|+.
T Consensus 66 ~~~~~~~a~~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~ 117 (182)
T cd04128 66 LPLVCNDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLF 117 (182)
T ss_pred hHHHCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhcc
Confidence 4456788999999999985544433 45666665542222 35 6889999985
No 164
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.62 E-value=2.4e-14 Score=106.43 Aligned_cols=145 Identities=21% Similarity=0.171 Sum_probs=106.5
Q ss_pred CCCCCcccccccCCCCCCceE----------------------EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee
Q 030624 2 MGGSAIDDDWELTSPSNGERT----------------------VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC 59 (174)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~----------------------i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~ 59 (174)
.|+.+-..|+.|.++.++.++ |+++|-+++|||||++.++...+- . ......|...
T Consensus 119 kGG~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~AkPK-I-adYpFTTL~P 196 (369)
T COG0536 119 KGGRGGLGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAAKPK-I-ADYPFTTLVP 196 (369)
T ss_pred cCCCCCccchhhcCcccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhcCCc-c-cCCccccccC
Confidence 356666777777777766554 899999999999999999987642 2 2334445544
Q ss_pred EEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCC---HH-H-HHHHHHHHHHHh
Q 030624 60 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS---QE-E-EAALHSLQTLFG 134 (174)
Q Consensus 60 ~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~---~~-~-~~~l~~l~~~~~ 134 (174)
+.-.+....+..+.+-|.||+.++.....-+..++++.+.++ .+++.|+|.+ +.+ +. + ..+...|..+..
T Consensus 197 nLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt----~vL~hviD~s-~~~~~dp~~~~~~i~~EL~~Y~~ 271 (369)
T COG0536 197 NLGVVRVDGGESFVVADIPGLIEGASEGVGLGLRFLRHIERT----RVLLHVIDLS-PIDGRDPIEDYQTIRNELEKYSP 271 (369)
T ss_pred cccEEEecCCCcEEEecCcccccccccCCCccHHHHHHHHhh----heeEEEEecC-cccCCCHHHHHHHHHHHHHHhhH
Confidence 544444435778999999999999888888899999998877 8999999987 333 22 2 455566666644
Q ss_pred hhhcCcEEEEEeCcCCCCC
Q 030624 135 KKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 135 ~~~~~~~~iv~tk~D~~~~ 153 (174)
.-..+|.+||.||+|...+
T Consensus 272 ~L~~K~~ivv~NKiD~~~~ 290 (369)
T COG0536 272 KLAEKPRIVVLNKIDLPLD 290 (369)
T ss_pred HhccCceEEEEeccCCCcC
Confidence 4455799999999996554
No 165
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.61 E-value=7.5e-15 Score=103.63 Aligned_cols=115 Identities=19% Similarity=0.120 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
++|+++|++|+|||||++.+.+....... .+|..... ...... ....+.++||||.... ....
T Consensus 1 ~kivivG~~~vGKTsli~~~~~~~~~~~~----~~t~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~-----------~~l~ 65 (189)
T cd04134 1 RKVVVLGDGACGKTSLLNVFTRGYFPQVY----EPTVFENYVHDIFVDGLHIELSLWDTAGQEEF-----------DRLR 65 (189)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCcc----CCcceeeeEEEEEECCEEEEEEEEECCCChhc-----------cccc
Confidence 47899999999999999999987643221 12221111 112221 1246789999998652 2223
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|++.+++-+... ..|+..+.... ...|+++|.||+|+...
T Consensus 66 ~~~~~~a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~---~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 66 SLSYADTDVIMLCFSVDSPDSLENVESKWLGEIREHC---PGVKLVLVALKCDLREA 119 (189)
T ss_pred cccccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhccC
Confidence 345678899999999985433333 34666666542 13699999999998754
No 166
>PRK12739 elongation factor G; Reviewed
Probab=99.61 E-value=9.9e-15 Score=120.90 Aligned_cols=120 Identities=22% Similarity=0.271 Sum_probs=87.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccc--ccc--------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAF--KSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 81 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~--~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~ 81 (174)
.+-++|+++|+.++|||||+++|+..... ..+ ....+.|.........| ++..+.++||||+.
T Consensus 6 ~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~-~~~~i~liDTPG~~ 84 (691)
T PRK12739 6 EKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KGHRINIIDTPGHV 84 (691)
T ss_pred cCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEE-CCEEEEEEcCCCHH
Confidence 34578999999999999999999742110 000 11345677766777777 78899999999986
Q ss_pred CCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 82 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
+ ...+ +..++..+|++++|+|+.++....++..+..+.... .|.++++||+|+...+
T Consensus 85 ~-------f~~e----~~~al~~~D~~ilVvDa~~g~~~qt~~i~~~~~~~~-----~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 85 D-------FTIE----VERSLRVLDGAVAVFDAVSGVEPQSETVWRQADKYG-----VPRIVFVNKMDRIGAD 141 (691)
T ss_pred H-------HHHH----HHHHHHHhCeEEEEEeCCCCCCHHHHHHHHHHHHcC-----CCEEEEEECCCCCCCC
Confidence 4 1223 333445569999999998888888887777665542 5889999999998653
No 167
>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=1.1e-14 Score=99.99 Aligned_cols=125 Identities=14% Similarity=0.141 Sum_probs=92.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEE--EEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQR--TVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
..+++++|..++||||||+..+-...- .....|....+.. +.+. ...++.+|||+|+.+ ++.
T Consensus 22 ~~KlVflGdqsVGKTslItRf~yd~fd----~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQER-----------Frs 86 (221)
T KOG0094|consen 22 KYKLVFLGDQSVGKTSLITRFMYDKFD----NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQER-----------FRS 86 (221)
T ss_pred EEEEEEEccCccchHHHHHHHHHhhhc----ccccceeeeEEEEEEEEEcCcEEEEEEEecccHHH-----------Hhh
Confidence 478999999999999999998855422 1233343333332 2221 234679999999998 778
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHH
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED 160 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 160 (174)
.+..+++++.++++|+|.++.-+.+. .+|++.+....+.+. ..+++|.||.|+.++.+...++
T Consensus 87 lipsY~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~-viI~LVGnKtDL~dkrqvs~eE 150 (221)
T KOG0094|consen 87 LIPSYIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDD-VIIFLVGNKTDLSDKRQVSIEE 150 (221)
T ss_pred hhhhhccCCeEEEEEEeccccchHHHHHHHHHHHHhccCCCc-eEEEEEcccccccchhhhhHHH
Confidence 88889999999999999987766665 789888888766541 3678999999999876544444
No 168
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.61 E-value=1.4e-14 Score=119.94 Aligned_cols=121 Identities=21% Similarity=0.234 Sum_probs=86.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccc--cc--------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFK--SR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~--~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~ 80 (174)
..+-++|+++|+.++|||||+|+|+...... .+ ....+.|.........| ++..+.++||||+
T Consensus 7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~-~~~~i~liDTPG~ 85 (689)
T TIGR00484 7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFW-KGHRINIIDTPGH 85 (689)
T ss_pred cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEE-CCeEEEEEECCCC
Confidence 3445899999999999999999997422110 00 01235666666777777 7889999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
.++. .+ +..++..+|++++|+|+.++....+...+..+.... .|+++++||+|+...+
T Consensus 86 ~~~~-------~~----~~~~l~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~-----~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 86 VDFT-------VE----VERSLRVLDGAVAVLDAVGGVQPQSETVWRQANRYE-----VPRIAFVNKMDKTGAN 143 (689)
T ss_pred cchh-------HH----HHHHHHHhCEEEEEEeCCCCCChhHHHHHHHHHHcC-----CCEEEEEECCCCCCCC
Confidence 8632 12 223445569999999998777777777766554432 5889999999998654
No 169
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.61 E-value=4.8e-14 Score=102.58 Aligned_cols=88 Identities=20% Similarity=0.263 Sum_probs=59.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+++++|++|+|||||+|+|++.... .+ .....|.......+.+ ++..+.++||||+.+..........++ ...
T Consensus 2 ~v~lvG~~~~GKStLl~~Ltg~~~~-v~-~~~~tT~~~~~g~~~~-~~~~i~l~DtpG~~~~~~~~~~~~~~~----l~~ 74 (233)
T cd01896 2 RVALVGFPSVGKSTLLSKLTNTKSE-VA-AYEFTTLTCVPGVLEY-KGAKIQLLDLPGIIEGAADGKGRGRQV----IAV 74 (233)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcc-cc-CCCCccccceEEEEEE-CCeEEEEEECCCcccccccchhHHHHH----HHh
Confidence 6899999999999999999997632 22 1223343333334445 677899999999876432222222233 234
Q ss_pred cCCceEEEEEEeCCC
Q 030624 102 KDGIHAVLVVFSVRS 116 (174)
Q Consensus 102 ~~~~~~il~v~~~~~ 116 (174)
+..+|++++|+|+++
T Consensus 75 ~~~ad~il~V~D~t~ 89 (233)
T cd01896 75 ARTADLILMVLDATK 89 (233)
T ss_pred hccCCEEEEEecCCc
Confidence 667799999999863
No 170
>PRK00049 elongation factor Tu; Reviewed
Probab=99.61 E-value=1.2e-14 Score=113.28 Aligned_cols=118 Identities=17% Similarity=0.159 Sum_probs=83.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
.+..+++++|+.++|||||+++|++..... ..+...+.|.......+.+ ++..+.++||||+.+
T Consensus 10 ~~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~-~~~~i~~iDtPG~~~- 87 (396)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYET-EKRHYAHVDCPGHAD- 87 (396)
T ss_pred CCEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcC-CCeEEEEEECCCHHH-
Confidence 345889999999999999999998732110 0111345555554444444 456789999999753
Q ss_pred CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEE-EEEeCcCCCC
Q 030624 84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMI-VVFTGGDELE 152 (174)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~-iv~tk~D~~~ 152 (174)
+..........+|++++|+|+.++....+.+++..+.... .|.+ +++||+|+..
T Consensus 88 ----------f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g-----~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 88 ----------YVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVG-----VPYIVVFLNKCDMVD 142 (396)
T ss_pred ----------HHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcC-----CCEEEEEEeecCCcc
Confidence 4444445567889999999998788888888887766542 4654 6899999975
No 171
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.61 E-value=6.2e-15 Score=101.68 Aligned_cols=118 Identities=19% Similarity=0.231 Sum_probs=69.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
+|+++|++|+|||||+++++........ ........ ...... +. ..+.+|||||..... .. ...
T Consensus 1 ki~vvG~~~~GKtsli~~~~~~~~~~~~-~~t~~~~~--~~~~~~-~~~~~~~~i~D~~g~~~~~--~~----~~~---- 66 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKRFIGEY-DPNLESLY--SRQVTI-DGEQVSLEILDTAGQQQAD--TE----QLE---- 66 (165)
T ss_pred CEEEECCCCCcHHHHHHHHHhCcccccc-CCChHHhc--eEEEEE-CCEEEEEEEEECCCCcccc--cc----hHH----
Confidence 4799999999999999998864421111 11111111 112222 22 357899999988410 00 011
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+..+|++++|+|.++.-+... ..++..+.+........|+++|.||+|+...
T Consensus 67 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 67 RSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred HHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 23456799999999985433332 4455555554211223689999999998643
No 172
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.61 E-value=1.8e-14 Score=98.85 Aligned_cols=116 Identities=19% Similarity=0.155 Sum_probs=71.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
+|+++|++|+|||||+++++............... ........ ....+.++||||..+ +......
T Consensus 2 ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~D~~g~~~-----------~~~~~~~ 67 (164)
T cd04139 2 KVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADS---YRKKVVLDGEDVQLNILDTAGQED-----------YAAIRDN 67 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCccccCCcchhh---EEEEEEECCEEEEEEEEECCChhh-----------hhHHHHH
Confidence 78999999999999999999765332111111111 11111221 234688999999775 2233344
Q ss_pred ccCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
....+|+++++++..++-+.. ...+...+..... ....|+++|+||+|+..
T Consensus 68 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 68 YHRSGEGFLLVFSITDMESFTATAEFREQILRVKD-DDNVPLLLVGNKCDLED 119 (164)
T ss_pred HhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEEcccccc
Confidence 566779999999987432222 1344444444321 22369999999999976
No 173
>PRK00007 elongation factor G; Reviewed
Probab=99.61 E-value=1.4e-14 Score=120.03 Aligned_cols=121 Identities=19% Similarity=0.236 Sum_probs=87.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhC---Ccccccc-------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILG---RRAFKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~---~~~~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~ 80 (174)
..+-++|+++|+.++|||||+++|+. ....... ....+.|.........| ++..+.++||||+
T Consensus 7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~-~~~~~~liDTPG~ 85 (693)
T PRK00007 7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFW-KDHRINIIDTPGH 85 (693)
T ss_pred ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEE-CCeEEEEEeCCCc
Confidence 33458999999999999999999973 2111000 01335666666667777 7889999999998
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
.++ ..++.+ +...+|++++|+|+.+++...+...+..+.... .|.++++||+|+...+
T Consensus 86 ~~f-------~~ev~~----al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~-----~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 86 VDF-------TIEVER----SLRVLDGAVAVFDAVGGVEPQSETVWRQADKYK-----VPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHH-------HHHHHH----HHHHcCEEEEEEECCCCcchhhHHHHHHHHHcC-----CCEEEEEECCCCCCCC
Confidence 651 123333 344559999999998888888888887776653 5789999999998764
No 174
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.61 E-value=1.3e-14 Score=101.24 Aligned_cols=117 Identities=13% Similarity=0.115 Sum_probs=84.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+..+|+++|+.||||||+++.|....... ..+|...+...+.+ ++..+.++|.+|... ++..
T Consensus 12 ~~~~~ililGl~~sGKTtll~~l~~~~~~~-----~~pT~g~~~~~i~~-~~~~~~~~d~gG~~~-----------~~~~ 74 (175)
T PF00025_consen 12 KKEIKILILGLDGSGKTTLLNRLKNGEISE-----TIPTIGFNIEEIKY-KGYSLTIWDLGGQES-----------FRPL 74 (175)
T ss_dssp TSEEEEEEEESTTSSHHHHHHHHHSSSEEE-----EEEESSEEEEEEEE-TTEEEEEEEESSSGG-----------GGGG
T ss_pred CcEEEEEEECCCccchHHHHHHhhhccccc-----cCcccccccceeee-CcEEEEEEecccccc-----------cccc
Confidence 456899999999999999999998754322 33455555666666 788999999999765 5667
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 153 (174)
++..+..+|+++||+|.++.- . -.+..+.|.+.+... ...|++|+.||.|....
T Consensus 75 w~~y~~~~~~iIfVvDssd~~-~-l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 75 WKSYFQNADGIIFVVDSSDPE-R-LQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp GGGGHTTESEEEEEEETTGGG-G-HHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred ceeeccccceeEEEEecccce-e-ecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 777888999999999998432 1 222333344444332 23699999999998764
No 175
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.61 E-value=1.5e-14 Score=101.09 Aligned_cols=117 Identities=21% Similarity=0.202 Sum_probs=71.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|++|+|||||++.+++........ +.+.......... .. ..+.++||||..+ +....
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~---~t~~~~~~~~~~~-~~~~~~~~l~D~~g~~~-----------~~~~~ 66 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYY---PTIENTFSKIIRY-KGQDYHLEIVDTAGQDE-----------YSILP 66 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCccccC---cchhhhEEEEEEE-CCEEEEEEEEECCChHh-----------hHHHH
Confidence 689999999999999999999765321111 1111111122222 22 3468999999765 22333
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++..+|++++++|.++...... ..+.+.+.+.... ...|+++++||+|+...
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~ 121 (180)
T cd04137 67 QKYSIGIHGYILVYSVTSRKSFEVVKVIYDKILDMLGK-ESVPIVLVGNKSDLHTQ 121 (180)
T ss_pred HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEEchhhhhc
Confidence 345567799999999985332222 3333444443221 22589999999998643
No 176
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.61 E-value=7.1e-15 Score=100.92 Aligned_cols=116 Identities=18% Similarity=0.233 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
++|+++|++|+|||||+|.|.+..... ..+. ...+ ... .+|||||..... ....+.+. .
T Consensus 2 ~~i~~iG~~~~GKstl~~~l~~~~~~~------~~~~-----~v~~-~~~--~~iDtpG~~~~~---~~~~~~~~----~ 60 (158)
T PRK15467 2 KRIAFVGAVGAGKTTLFNALQGNYTLA------RKTQ-----AVEF-NDK--GDIDTPGEYFSH---PRWYHALI----T 60 (158)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCCccC------ccce-----EEEE-CCC--CcccCCccccCC---HHHHHHHH----H
Confidence 479999999999999999999864211 1111 1222 111 269999986532 12222222 2
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 164 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 164 (174)
.+.++|++++|+|+++....... + +... .. ..|+++++||+|+...+...+.+++++
T Consensus 61 ~~~~ad~il~v~d~~~~~s~~~~-~---~~~~-~~--~~~ii~v~nK~Dl~~~~~~~~~~~~~~ 117 (158)
T PRK15467 61 TLQDVDMLIYVHGANDPESRLPA-G---LLDI-GV--SKRQIAVISKTDMPDADVAATRKLLLE 117 (158)
T ss_pred HHhcCCEEEEEEeCCCcccccCH-H---HHhc-cC--CCCeEEEEEccccCcccHHHHHHHHHH
Confidence 35678999999999854332222 2 1221 11 258999999999876544445555544
No 177
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.60 E-value=1.1e-14 Score=104.62 Aligned_cols=115 Identities=20% Similarity=0.291 Sum_probs=73.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccc-------c----------cCCCCcceeeEEEEEEEe----CCcEEEEEeCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKS-------R----------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPG 79 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~-------~----------~~~~~~t~~~~~~~~~~~----~~~~~~~iDtpG 79 (174)
++++++|+.|+|||||+++|+....... + ....+.+.........+. ....+.++||||
T Consensus 1 rnv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG 80 (213)
T cd04167 1 RNVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPG 80 (213)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCC
Confidence 4689999999999999999986432111 0 011122322223333331 235689999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 80 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
..++ .......+..+|++++|+|+.+.....+..+++.+.. .. .|+++++||+|+.
T Consensus 81 ~~~f-----------~~~~~~~~~~aD~~llVvD~~~~~~~~~~~~~~~~~~---~~--~p~iiviNK~D~~ 136 (213)
T cd04167 81 HVNF-----------MDEVAAALRLSDGVVLVVDVVEGVTSNTERLIRHAIL---EG--LPIVLVINKIDRL 136 (213)
T ss_pred Ccch-----------HHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHH---cC--CCEEEEEECcccC
Confidence 8862 2223334556799999999986766665555444332 12 5899999999986
No 178
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.60 E-value=2.1e-14 Score=117.01 Aligned_cols=117 Identities=22% Similarity=0.317 Sum_probs=84.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.|+++|+.++|||||+++|+|...-. ......+.|....+......++..+.+|||||+.+ +.+.+..
T Consensus 2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe~-----------fi~~m~~ 70 (614)
T PRK10512 2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHEK-----------FLSNMLA 70 (614)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHHH-----------HHHHHHH
Confidence 68999999999999999999854211 11223456666555544443456789999999854 3333444
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|+++++...+.+.+..+... +. +++++|+||+|+...
T Consensus 71 g~~~~D~~lLVVda~eg~~~qT~ehl~il~~l-gi---~~iIVVlNKiDlv~~ 119 (614)
T PRK10512 71 GVGGIDHALLVVACDDGVMAQTREHLAILQLT-GN---PMLTVALTKADRVDE 119 (614)
T ss_pred HhhcCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEECCccCCH
Confidence 56778999999999888888888888766543 21 356899999999754
No 179
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.60 E-value=7e-15 Score=114.66 Aligned_cols=120 Identities=17% Similarity=0.244 Sum_probs=81.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcc------cc--------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRA------FK--------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~------~~--------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
.+..+++++|+.++|||||+++|++... .. ..+...+.|.......+.. ++..+.++||||+.+
T Consensus 10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~-~~~~~~liDtpGh~~- 87 (394)
T TIGR00485 10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYET-ENRHYAHVDCPGHAD- 87 (394)
T ss_pred CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcC-CCEEEEEEECCchHH-
Confidence 3458999999999999999999984311 00 0111245565554444433 456789999999865
Q ss_pred CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+..........+|++++|+|+.++....+.+.+..+... +. +++++++||+|+...
T Consensus 88 ----------f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~-gi---~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 88 ----------YVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQV-GV---PYIVVFLNKCDMVDD 143 (394)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CEEEEEEEecccCCH
Confidence 222223344577999999999877888888887776554 21 345578999999754
No 180
>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=9.7e-15 Score=112.79 Aligned_cols=129 Identities=16% Similarity=0.160 Sum_probs=96.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
..++++|++++|||||+|+|+..+..-.. ...+.|.+.-...+.. ++.+++++||+|+-+ .+.+.....-.+.++.
T Consensus 269 l~iaIvGrPNvGKSSLlNaL~~~drsIVS-pv~GTTRDaiea~v~~-~G~~v~L~DTAGiRe--~~~~~iE~~gI~rA~k 344 (531)
T KOG1191|consen 269 LQIAIVGRPNVGKSSLLNALSREDRSIVS-PVPGTTRDAIEAQVTV-NGVPVRLSDTAGIRE--ESNDGIEALGIERARK 344 (531)
T ss_pred CeEEEEcCCCCCHHHHHHHHhcCCceEeC-CCCCcchhhheeEeec-CCeEEEEEecccccc--ccCChhHHHhHHHHHH
Confidence 88999999999999999999998754332 3355666666666665 899999999999998 4455566666677777
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh-h------cCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-I------FDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~-~------~~~~~iv~tk~D~~~~ 153 (174)
...++|++++|+|+.+..+..+..+.+.+......- . +.+.+++.||.|...+
T Consensus 345 ~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 345 RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 888999999999996666666666555555542211 1 2578899999998765
No 181
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.60 E-value=1.5e-14 Score=100.51 Aligned_cols=112 Identities=24% Similarity=0.160 Sum_probs=72.5
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
|+++|+.|+|||||++++++....... ..+..... ..... ++ ..+.++||||.... .....
T Consensus 1 i~i~G~~~vGKTsli~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~~~~ 64 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAFPEDY----VPTVFENYSADVEV-DGKPVELGLWDTAGQEDY-----------DRLRP 64 (174)
T ss_pred CEEECCCCCCHHHHHHHHHhCCCCCCC----CCcEEeeeeEEEEE-CCEEEEEEEEECCCCccc-----------chhch
Confidence 589999999999999999986642221 11221111 12222 23 35789999998752 22223
Q ss_pred hccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+..+|++++|+|.++.-+... ..|+..+.... ...|+++|.||+|+...
T Consensus 65 ~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~ 117 (174)
T smart00174 65 LSYPDTDVFLICFSVDSPASFENVKEKWYPEVKHFC---PNTPIILVGTKLDLRED 117 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEecChhhhhC
Confidence 45678899999999985433332 34666665542 23699999999998753
No 182
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.60 E-value=2.5e-14 Score=114.76 Aligned_cols=124 Identities=15% Similarity=0.168 Sum_probs=83.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc--cccccc------------------CCCCcceeeEEEEEEEeCCcEEEEEeC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRR--AFKSRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDT 77 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~--~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~iDt 77 (174)
.+.++++++|+.++|||||+++|+-.. ....+. ...+.+.......+.+ ++..+.++||
T Consensus 9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~-~~~~inliDT 87 (527)
T TIGR00503 9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPY-RDCLVNLLDT 87 (527)
T ss_pred ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEee-CCeEEEEEEC
Confidence 445899999999999999999985311 111110 0113444555566666 7788999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhh
Q 030624 78 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET 157 (174)
Q Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~ 157 (174)
||+.+ +......++..+|++++|+|+.+++......+++..... ..|+++++||+|+...+...
T Consensus 88 PG~~d-----------f~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~~PiivviNKiD~~~~~~~~ 151 (527)
T TIGR00503 88 PGHED-----------FSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLR-----DTPIFTFMNKLDRDIRDPLE 151 (527)
T ss_pred CChhh-----------HHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHHHHHHhc-----CCCEEEEEECccccCCCHHH
Confidence 99975 222222344567999999999877777766666544332 26899999999987544333
Q ss_pred H
Q 030624 158 L 158 (174)
Q Consensus 158 ~ 158 (174)
+
T Consensus 152 l 152 (527)
T TIGR00503 152 L 152 (527)
T ss_pred H
Confidence 3
No 183
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.60 E-value=1.5e-14 Score=102.87 Aligned_cols=114 Identities=23% Similarity=0.257 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+|+++|.+|+|||||++.+++....... ..|. ......+.+ .+ ..+.++||||.... ....
T Consensus 1 kv~vvG~~~vGKTsll~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~l~i~D~~G~~~~-----------~~~~ 64 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTFEPKY----RRTVEEMHRKEYEV-GGVSLTLDILDTSGSYSF-----------PAMR 64 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCCCccC----CCchhhheeEEEEE-CCEEEEEEEEECCCchhh-----------hHHH
Confidence 4799999999999999999986643211 1111 111222333 23 46789999997752 2223
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
...+..+|++++|+|.++..+... ..++..+.+.... ...|+++++||+|+..
T Consensus 65 ~~~~~~ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~ 118 (198)
T cd04147 65 KLSIQNSDAFALVYAVDDPESFEEVERLREEILEVKED-KFVPIVVVGNKADSLE 118 (198)
T ss_pred HHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEcccccc
Confidence 335678899999999985433332 3444445444321 2369999999999865
No 184
>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.60 E-value=7.3e-15 Score=100.72 Aligned_cols=125 Identities=21% Similarity=0.195 Sum_probs=85.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+++++|.+|+|||||+-............++.+...-+...... .....+.+|||.|..+ +.....
T Consensus 5 ~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-~~~ikfeIWDTAGQER-----------y~slap 72 (200)
T KOG0092|consen 5 EFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-DNTIKFEIWDTAGQER-----------YHSLAP 72 (200)
T ss_pred eEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-CcEEEEEEEEcCCccc-----------cccccc
Confidence 3789999999999999998887766443322333222222222221 1235678999999998 445556
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL 158 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~ 158 (174)
..+++++++|+|+|.++.-+... +.|++.|++..+++ ..+.+|.||+|+........
T Consensus 73 MYyRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~ 130 (200)
T KOG0092|consen 73 MYYRGANAAIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEF 130 (200)
T ss_pred ceecCCcEEEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccH
Confidence 78999999999999994433333 78888888876533 35668999999987443443
No 185
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.60 E-value=4.9e-15 Score=98.63 Aligned_cols=114 Identities=21% Similarity=0.237 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.|++++|++|||||||+++|.+.... ...|.. +.+ .+ .+|||||=+- -...+...+..
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~~------~~KTq~-----i~~-~~---~~IDTPGEyi-------E~~~~y~aLi~ 59 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEIR------YKKTQA-----IEY-YD---NTIDTPGEYI-------ENPRFYHALIV 59 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCCC------cCccce-----eEe-cc---cEEECChhhe-------eCHHHHHHHHH
Confidence 68999999999999999999986531 112221 222 12 2599999663 12334445555
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC--CCChhhHHHHhcc
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL--EDNDETLEDYLGR 164 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~--~~~~~~~~~~~~~ 164 (174)
....+|.|+++.|++++...-...+... + .+|++-|+||+|+. +.+.+..+++++.
T Consensus 60 ta~dad~V~ll~dat~~~~~~pP~fa~~----f----~~pvIGVITK~Dl~~~~~~i~~a~~~L~~ 117 (143)
T PF10662_consen 60 TAQDADVVLLLQDATEPRSVFPPGFASM----F----NKPVIGVITKIDLPSDDANIERAKKWLKN 117 (143)
T ss_pred HHhhCCEEEEEecCCCCCccCCchhhcc----c----CCCEEEEEECccCccchhhHHHHHHHHHH
Confidence 5667899999999985544333333322 2 15899999999998 4433344556655
No 186
>PLN03126 Elongation factor Tu; Provisional
Probab=99.60 E-value=8.3e-15 Score=116.12 Aligned_cols=120 Identities=16% Similarity=0.213 Sum_probs=84.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccc--------------ccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAF--------------KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
.+..+++++|+.++|||||+++|++.... .......+.|.......+.+ ++..+.++||||+.+
T Consensus 79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~-~~~~i~liDtPGh~~- 156 (478)
T PLN03126 79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYET-ENRHYAHVDCPGHAD- 156 (478)
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEec-CCcEEEEEECCCHHH-
Confidence 34578999999999999999999852210 01122345565555555555 677899999999875
Q ss_pred CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+.......+..+|++++|+|+.++....+++++..+... +. +++++++||+|+...
T Consensus 157 ----------f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~-gi---~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 157 ----------YVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQV-GV---PNMVVFLNKQDQVDD 212 (478)
T ss_pred ----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-CC---CeEEEEEecccccCH
Confidence 333333344577999999999878888888888765554 21 247889999999764
No 187
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.60 E-value=1.7e-14 Score=100.69 Aligned_cols=114 Identities=22% Similarity=0.127 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+++++|.+|+|||||++.+........ ..+|...... .... .+ ..+.+|||+|..+ +...
T Consensus 2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~----~~pt~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 65 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKFPSE----YVPTVFDNYAVTVMI-GGEPYTLGLFDTAGQED-----------YDRL 65 (175)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCC----CCCceeeeeEEEEEE-CCEEEEEEEEECCCccc-----------hhhh
Confidence 5799999999999999999997653222 1122222111 2223 33 4578999999876 2223
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+..+|++++|+|.+++-+... ..|+..+.... . ..|+++|.||+|+...
T Consensus 66 ~~~~~~~a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~~ 120 (175)
T cd01874 66 RPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHC-P--KTPFLLVGTQIDLRDD 120 (175)
T ss_pred hhhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECHhhhhC
Confidence 3346678899999999985544433 24666665542 2 2699999999998643
No 188
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.60 E-value=3e-14 Score=98.83 Aligned_cols=117 Identities=14% Similarity=-0.000 Sum_probs=70.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|.+|+|||||++.+++....... ..+..........+.+ ++ ..+.++|++|..... ...
T Consensus 5 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~-~~~T~~~~~~~~~~~~-~~~~~~l~~~d~~g~~~~~-----------~~~ 71 (169)
T cd01892 5 FLCFVLGAKGSGKSALLRAFLGRSFSLNA-YSPTIKPRYAVNTVEV-YGQEKYLILREVGEDEVAI-----------LLN 71 (169)
T ss_pred EEEEEECCCCCcHHHHHHHHhCCCCCccc-CCCccCcceEEEEEEE-CCeEEEEEEEecCCccccc-----------ccc
Confidence 78999999999999999999987632011 1111111111222333 33 357789999977532 122
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+.++|++++|+|.+++-+.. ...+++... ......|+++|+||+|+...
T Consensus 72 ~~~~~~~d~~llv~d~~~~~s~~--~~~~~~~~~-~~~~~~p~iiv~NK~Dl~~~ 123 (169)
T cd01892 72 DAELAACDVACLVYDSSDPKSFS--YCAEVYKKY-FMLGEIPCLFVAAKADLDEQ 123 (169)
T ss_pred hhhhhcCCEEEEEEeCCCHHHHH--HHHHHHHHh-ccCCCCeEEEEEEccccccc
Confidence 23457889999999997442211 112222222 11123699999999998643
No 189
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.60 E-value=2.7e-14 Score=103.21 Aligned_cols=116 Identities=20% Similarity=0.113 Sum_probs=70.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
+|+++|++|+|||||++.+++.... .......+.. .....+... ....+.+|||||... . ...
T Consensus 2 KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~--~~~~~i~~~~~~~~l~i~Dt~G~~~------~----~~~--- 66 (221)
T cd04148 2 RVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDD--TYERTVSVDGEESTLVVIDHWEQEM------W----TED--- 66 (221)
T ss_pred EEEEECCCCCcHHHHHHHHhcCCcCccCcCCCcccc--ceEEEEEECCEEEEEEEEeCCCcch------H----HHh---
Confidence 7899999999999999999765432 1111111101 111122221 235688999999872 1 111
Q ss_pred hccC-CceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKD-GIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~-~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+.. .+|++++|+|.+++-+... ..++..+.+.. .....|+++|.||+|+...
T Consensus 67 ~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~-~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 67 SCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNR-QLEDRPIILVGNKSDLARS 121 (221)
T ss_pred HHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhc-CCCCCCEEEEEEChhcccc
Confidence 1223 7899999999985433332 45555555432 1123699999999998654
No 190
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.59 E-value=2.9e-14 Score=103.43 Aligned_cols=115 Identities=14% Similarity=0.038 Sum_probs=77.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|..|+|||||++.+++...... ..+|....+ ..+... ....+.+|||+|... +...
T Consensus 13 ~~KIvvvGd~~VGKTsLi~r~~~~~F~~~----y~pTi~~~~~~~i~~~~~~v~l~iwDTaG~e~-----------~~~~ 77 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCYPET----YVPTVFENYTAGLETEEQRVELSLWDTSGSPY-----------YDNV 77 (232)
T ss_pred eEEEEEECCCCCcHHHHHHHHhcCCCCCC----cCCceeeeeEEEEEECCEEEEEEEEeCCCchh-----------hHHH
Confidence 47899999999999999999987653211 112221111 112221 234689999999765 3334
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
...++.++|++++|+|.+++-+... ..|++.+.+... ..|+++|.||+|+..
T Consensus 78 ~~~~~~~ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~---~~piilVgNK~DL~~ 131 (232)
T cd04174 78 RPLCYSDSDAVLLCFDISRPETVDSALKKWKAEIMDYCP---STRILLIGCKTDLRT 131 (232)
T ss_pred HHHHcCCCcEEEEEEECCChHHHHHHHHHHHHHHHHhCC---CCCEEEEEECccccc
Confidence 4456789999999999986555443 467777766532 258999999999853
No 191
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.59 E-value=8.2e-15 Score=98.63 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=65.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+|+++|++|+|||||+|++++.... ...|. ...+ .. .++||||... . ...+.+.+...
T Consensus 2 kv~liG~~~vGKSsL~~~l~~~~~~------~~~t~-----~~~~-~~---~~iDt~G~~~---~----~~~~~~~~~~~ 59 (142)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIL------YKKTQ-----AVEY-ND---GAIDTPGEYV---E----NRRLYSALIVT 59 (142)
T ss_pred eEEEECCCCCCHHHHHHHHcCCccc------cccce-----eEEE-cC---eeecCchhhh---h----hHHHHHHHHHH
Confidence 7899999999999999999987521 11122 1223 22 5899999742 1 11122222234
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+.++|++++|+|++++.+.....+.+. .. .|+++|+||+|+..
T Consensus 60 ~~~ad~vilv~d~~~~~s~~~~~~~~~----~~----~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 60 AADADVIALVQSATDPESRFPPGFASI----FV----KPVIGLVTKIDLAE 102 (142)
T ss_pred hhcCCEEEEEecCCCCCcCCChhHHHh----cc----CCeEEEEEeeccCC
Confidence 788999999999986655544333321 11 48999999999864
No 192
>PRK10218 GTP-binding protein; Provisional
Probab=99.59 E-value=4.4e-14 Score=114.67 Aligned_cols=117 Identities=19% Similarity=0.229 Sum_probs=84.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc-ccc-c------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRA-FKS-R------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~-~~~-~------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
-++|+++|+.++|||||+++|+.... +.. + ....+.|.......+.| ++..+.+|||||..++
T Consensus 5 iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~-~~~~inliDTPG~~df-- 81 (607)
T PRK10218 5 LRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKW-NDYRINIVDTPGHADF-- 81 (607)
T ss_pred ceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEec-CCEEEEEEECCCcchh--
Confidence 47899999999999999999986321 111 1 12235566666666666 7788999999998873
Q ss_pred ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+...+..+|++++|+|+.++....++.++..+... . .|.++++||+|....
T Consensus 82 ---------~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l~~a~~~---g--ip~IVviNKiD~~~a 135 (607)
T PRK10218 82 ---------GGEVERVMSMVDSVLLVVDAFDGPMPQTRFVTKKAFAY---G--LKPIVVINKVDRPGA 135 (607)
T ss_pred ---------HHHHHHHHHhCCEEEEEEecccCccHHHHHHHHHHHHc---C--CCEEEEEECcCCCCC
Confidence 22333455677999999999877777777776655443 2 578999999998754
No 193
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.59 E-value=3.1e-14 Score=102.70 Aligned_cols=115 Identities=18% Similarity=0.071 Sum_probs=73.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|..|+|||||++.+++...+.... +|....+ ..+... ....+.+|||+|... +....
T Consensus 2 ~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~----pTi~~~~~~~~~~~~~~v~L~iwDt~G~e~-----------~~~l~ 66 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAYPGSYV----PTVFENYTASFEIDKRRIELNMWDTSGSSY-----------YDNVR 66 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHHcCCCCCccC----CccccceEEEEEECCEEEEEEEEeCCCcHH-----------HHHHh
Confidence 579999999999999999999866432211 1211111 122221 234578899999765 33344
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++..+|++++|+|.+++-+... ..|...+.... . ..|+++|.||+|+...
T Consensus 67 ~~~~~~~d~illvfdis~~~Sf~~i~~~w~~~~~~~~-~--~~piiLVgnK~DL~~~ 120 (222)
T cd04173 67 PLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC-P--NAKVVLVGCKLDMRTD 120 (222)
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEECcccccc
Confidence 456889999999999985533332 23443333322 2 2589999999998653
No 194
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.58 E-value=3.1e-14 Score=100.64 Aligned_cols=116 Identities=18% Similarity=0.061 Sum_probs=75.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+++++|..|+|||||++.+........ ..+|....+. ..... +...+.+|||+|... +...
T Consensus 3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~e~-----------~~~l 67 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAFPKE----YIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEE-----------YDRL 67 (191)
T ss_pred cEEEEEECCCCCCHHHHHHHHHhCCCCcC----CCCceEeeeEEEEEECCEEEEEEEEECCCchh-----------hhhh
Confidence 36899999999999999999887653212 1122221111 11221 234678999999876 3334
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+.++|++++|+|.+++-+.... .|...+.... . ..|+++|.||.|+...
T Consensus 68 ~~~~~~~a~~~ilvydit~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~~ 122 (191)
T cd01875 68 RTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHHC-P--NVPILLVGTKKDLRND 122 (191)
T ss_pred hhhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEEeChhhhcC
Confidence 44567889999999999855443332 3555454432 2 3699999999998643
No 195
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.58 E-value=1.1e-13 Score=93.85 Aligned_cols=117 Identities=22% Similarity=0.220 Sum_probs=68.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|.+|+|||||++.+++...+ .. .....+.........+ .+ ..+.++|+||..+.. ...
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~~~-~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~~ 67 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNKFI-TE-YKPGTTRNYVTTVIEE-DGKTYKFNLLDTAGQEDYR-----------AIR 67 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCc-Cc-CCCCceeeeeEEEEEE-CCEEEEEEEEECCCcccch-----------HHH
Confidence 68999999999999999999998732 22 2223333333333334 44 568899999966521 111
Q ss_pred HhccCCceEEEEEEeCCCC-CCHH--HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSR-FSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~-~~~~--~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......++.+++++|.... .+.. ...+...+...... ..|+++++||+|+...
T Consensus 68 ~~~~~~~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~--~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 68 RLYYRAVESSLRVFDIVILVLDVEEILEKQTKEIIHHAES--NVPIILVGNKIDLRDA 123 (161)
T ss_pred HHHHhhhhEEEEEEEEeeeehhhhhHhHHHHHHHHHhccc--CCcEEEEEEcccCCcc
Confidence 1222334555555555422 1111 12344444444322 3689999999999764
No 196
>PLN00023 GTP-binding protein; Provisional
Probab=99.58 E-value=5.9e-14 Score=105.23 Aligned_cols=127 Identities=18% Similarity=0.201 Sum_probs=83.4
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe--------------CCcEEEEEeCCC
Q 030624 14 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------DGQVVNVIDTPG 79 (174)
Q Consensus 14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------~~~~~~~iDtpG 79 (174)
..+.....+|+++|..|+|||||++.+++.........+.+.+. ....+.+. +...+.+|||+|
T Consensus 15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~--~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG 92 (334)
T PLN00023 15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTV--GVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG 92 (334)
T ss_pred cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeE--EEEEEEECCcccccccccccCCceEEEEEEECCC
Confidence 45556668999999999999999999997653211111111111 11222221 123589999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh----------hhcCcEEEEEeCc
Q 030624 80 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK----------KIFDYMIVVFTGG 148 (174)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~----------~~~~~~~iv~tk~ 148 (174)
... +..+...++.+++++|+|+|.++.-+... ..|++.+...... ....+++||.||+
T Consensus 93 qEr-----------frsL~~~yyr~AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~ 161 (334)
T PLN00023 93 HER-----------YKDCRSLFYSQINGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKA 161 (334)
T ss_pred Chh-----------hhhhhHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECc
Confidence 876 45555667889999999999985443333 5677777664210 0125899999999
Q ss_pred CCCCC
Q 030624 149 DELED 153 (174)
Q Consensus 149 D~~~~ 153 (174)
|+...
T Consensus 162 DL~~~ 166 (334)
T PLN00023 162 DIAPK 166 (334)
T ss_pred ccccc
Confidence 98653
No 197
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.58 E-value=4.9e-14 Score=103.36 Aligned_cols=115 Identities=20% Similarity=0.171 Sum_probs=71.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+|+++|..|+|||||++.+++...... ..+|. ......+.. ++ ..+.+|||+|..+. ....
T Consensus 2 KVvvlG~~gvGKTSLi~r~~~~~f~~~----y~pTi~d~~~k~~~i-~~~~~~l~I~Dt~G~~~~-----------~~~~ 65 (247)
T cd04143 2 RMVVLGASKVGKTAIVSRFLGGRFEEQ----YTPTIEDFHRKLYSI-RGEVYQLDILDTSGNHPF-----------PAMR 65 (247)
T ss_pred EEEEECcCCCCHHHHHHHHHcCCCCCC----CCCChhHhEEEEEEE-CCEEEEEEEEECCCChhh-----------hHHH
Confidence 689999999999999999987653321 11121 111122222 23 45789999997652 1122
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHh-------hhhcCcEEEEEeCcCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFG-------KKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~-------~~~~~~~~iv~tk~D~~~ 152 (174)
...+..+|++++|+|.++.-+... ..+++.+.+... .....|++++.||+|+..
T Consensus 66 ~~~~~~ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 66 RLSILTGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred HHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 224567899999999985433332 344455543211 112369999999999974
No 198
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.58 E-value=3.3e-14 Score=99.21 Aligned_cols=115 Identities=17% Similarity=0.083 Sum_probs=77.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+++++|..|+|||||+..+...........+.+... ....... ....+.+|||+|..+ +.....
T Consensus 2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~---~~~~~~~~~~v~l~i~Dt~G~~~-----------~~~~~~ 67 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNF---SANVSVDGNTVNLGLWDTAGQED-----------YNRLRP 67 (176)
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeee---EEEEEECCEEEEEEEEECCCCcc-----------ccccch
Confidence 5799999999999999999997653222111111111 1122221 234679999999876 333334
Q ss_pred hccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
..+.++|++++|+|.+++-+... ..|+..+.... . ..|+++|.||+|+.+
T Consensus 68 ~~~~~a~~~ilvyd~~~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgnK~Dl~~ 119 (176)
T cd04133 68 LSYRGADVFVLAFSLISRASYENVLKKWVPELRHYA-P--NVPIVLVGTKLDLRD 119 (176)
T ss_pred hhcCCCcEEEEEEEcCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEeChhhcc
Confidence 46788999999999986655554 35777776543 2 369999999999864
No 199
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.58 E-value=5e-14 Score=112.97 Aligned_cols=120 Identities=15% Similarity=0.216 Sum_probs=80.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc--cccccc------------------CCCCcceeeEEEEEEEeCCcEEEEEeC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRR--AFKSRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDT 77 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~--~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~iDt 77 (174)
.+.++++++|+.++|||||.++|+... ....+. ...+.+.......+.| ++..+.++||
T Consensus 8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~-~~~~inliDT 86 (526)
T PRK00741 8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPY-RDCLINLLDT 86 (526)
T ss_pred hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEE-CCEEEEEEEC
Confidence 345899999999999999999986311 110110 0113344445555666 7788999999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 78 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
||+.++. .+.. .++..+|++++|+|+++++......+++..... ..|+++++||+|+...+
T Consensus 87 PG~~df~-------~~~~----~~l~~aD~aIlVvDa~~gv~~~t~~l~~~~~~~-----~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 87 PGHEDFS-------EDTY----RTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLR-----DTPIFTFINKLDRDGRE 147 (526)
T ss_pred CCchhhH-------HHHH----HHHHHCCEEEEEEecCCCCCHHHHHHHHHHHhc-----CCCEEEEEECCcccccC
Confidence 9987621 1222 233456999999999877777666665544332 26899999999987654
No 200
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.58 E-value=6.6e-14 Score=97.58 Aligned_cols=115 Identities=17% Similarity=0.044 Sum_probs=73.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+++++|..|+|||||+.+++............. .......... ....+.++||||... +.....
T Consensus 2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~---~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~~ 67 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF---DNYSANVMVDGKPVNLGLWDTAGQED-----------YDRLRP 67 (174)
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcce---eeeEEEEEECCEEEEEEEEECCCchh-----------hhhhhh
Confidence 5899999999999999999887553222111111 1111122221 124578999999765 233334
Q ss_pred hccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.++.++|++++|+|.+++-+... ..|+..+.... . ..|+++|.||.|+..
T Consensus 68 ~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~-~--~~piilvgnK~Dl~~ 119 (174)
T cd01871 68 LSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P--NTPIILVGTKLDLRD 119 (174)
T ss_pred hhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEeeChhhcc
Confidence 46778999999999985433333 24555555532 2 369999999999854
No 201
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.58 E-value=1.3e-13 Score=94.11 Aligned_cols=130 Identities=17% Similarity=0.224 Sum_probs=95.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc-----ccCCCC---cceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSG---VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVG 91 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~-----~~~~~~---~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~ 91 (174)
..+|+++|+.++||||+++.+........ ..+... .|....+....+..+..+++++|||+.+
T Consensus 10 ~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~R--------- 80 (187)
T COG2229 10 ETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQER--------- 80 (187)
T ss_pred ceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCCcHH---------
Confidence 46899999999999999999998764222 112222 4555566666664558899999999997
Q ss_pred HHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh-hhHHHHhcc
Q 030624 92 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-ETLEDYLGR 164 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~-~~~~~~~~~ 164 (174)
+.-.+....+++..+++++|.+...+......++.+..... .|++|++||.|+.+... +.+.++++.
T Consensus 81 --F~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~ppe~i~e~l~~ 148 (187)
T COG2229 81 --FKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNP----IPVVVAINKQDLFDALPPEKIREALKL 148 (187)
T ss_pred --HHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccC----CCEEEEeeccccCCCCCHHHHHHHHHh
Confidence 44444455677899999999987777766777777766432 58999999999987643 346677766
No 202
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.58 E-value=7.2e-14 Score=97.04 Aligned_cols=113 Identities=20% Similarity=0.136 Sum_probs=71.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+|+++|++|+|||||++.+++....... .+|.... ...... .+ ..+.+|||||..+.. ...
T Consensus 2 ki~i~G~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~~~ 65 (174)
T cd04135 2 KCVVVGDGAVGKTCLLMSYANDAFPEEY----VPTVFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD-----------RLR 65 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeEEEEEE-CCEEEEEEEEeCCCccccc-----------ccc
Confidence 7899999999999999999886642221 1121111 112222 22 346799999987632 122
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|++.+++-+... ..++..+... .. ..|++++.||+|+.+.
T Consensus 66 ~~~~~~~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~-~~--~~piivv~nK~Dl~~~ 119 (174)
T cd04135 66 PLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP--NVPYLLVGTQIDLRDD 119 (174)
T ss_pred cccCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhh-CC--CCCEEEEeEchhhhcC
Confidence 235678899999999975433332 3455555543 22 3689999999998643
No 203
>COG2262 HflX GTPases [General function prediction only]
Probab=99.57 E-value=7.4e-14 Score=106.15 Aligned_cols=129 Identities=26% Similarity=0.237 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.-+.|+++|-++||||||+|+|++...+.. .....|-+.......+..+..+.+-||-||.+ .-++.+..-+...+
T Consensus 191 ~~p~vaLvGYTNAGKSTL~N~LT~~~~~~~--d~LFATLdpttR~~~l~~g~~vlLtDTVGFI~--~LP~~LV~AFksTL 266 (411)
T COG2262 191 GIPLVALVGYTNAGKSTLFNALTGADVYVA--DQLFATLDPTTRRIELGDGRKVLLTDTVGFIR--DLPHPLVEAFKSTL 266 (411)
T ss_pred CCCeEEEEeeccccHHHHHHHHhccCeecc--ccccccccCceeEEEeCCCceEEEecCccCcc--cCChHHHHHHHHHH
Confidence 347899999999999999999998776433 33445555555566664578999999999997 44666666666665
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
. ....+|.++.|+|++++.-... ....+.|.+. +... .|+++|+||+|++.+.
T Consensus 267 E-E~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el-~~~~-~p~i~v~NKiD~~~~~ 320 (411)
T COG2262 267 E-EVKEADLLLHVVDASDPEILEKLEAVEDVLAEI-GADE-IPIILVLNKIDLLEDE 320 (411)
T ss_pred H-HhhcCCEEEEEeecCChhHHHHHHHHHHHHHHc-CCCC-CCEEEEEecccccCch
Confidence 5 4578899999999986622222 2333334443 3222 6999999999998763
No 204
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.57 E-value=2.5e-14 Score=111.83 Aligned_cols=118 Identities=14% Similarity=0.157 Sum_probs=81.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccc--------------cc-----------------cCCCCcceeeEEEEEEEeCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFK--------------SR-----------------ASSSGVTSTCEMQRTVLKDG 69 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~-----------------~~~~~~t~~~~~~~~~~~~~ 69 (174)
.+++++|+.++|||||++.|+.....- .+ +...+.|.........+ ++
T Consensus 1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~-~~ 79 (406)
T TIGR02034 1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFST-DK 79 (406)
T ss_pred CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEcc-CC
Confidence 378999999999999999986432110 01 11224556666666666 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 149 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D 149 (174)
..+.++||||+.+ +.......+..+|++++|+|+.+++...+.+.+..+... +. +++++++||+|
T Consensus 80 ~~~~liDtPGh~~-----------f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~-~~---~~iivviNK~D 144 (406)
T TIGR02034 80 RKFIVADTPGHEQ-----------YTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLL-GI---RHVVLAVNKMD 144 (406)
T ss_pred eEEEEEeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHc-CC---CcEEEEEEecc
Confidence 7899999999764 222223345678999999999878877777766655543 21 47899999999
Q ss_pred CCCCC
Q 030624 150 ELEDN 154 (174)
Q Consensus 150 ~~~~~ 154 (174)
+...+
T Consensus 145 ~~~~~ 149 (406)
T TIGR02034 145 LVDYD 149 (406)
T ss_pred cccch
Confidence 97543
No 205
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.57 E-value=4.4e-14 Score=114.37 Aligned_cols=115 Identities=18% Similarity=0.239 Sum_probs=76.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-----------------CCcEEEEEeCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFD 82 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~~iDtpG~~~ 82 (174)
.+.|+++|+.++|||||+|+|++...... ...+.|.........+. +...+.++||||+..
T Consensus 4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~ 81 (590)
T TIGR00491 4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEA 81 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHh
Confidence 46899999999999999999998754221 11112211111111100 112488999999865
Q ss_pred CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+.......+..+|++++|+|++++....+.+.+..+... . .|+++++||+|+..
T Consensus 82 -----------f~~l~~~~~~~aD~~IlVvD~~~g~~~qt~e~i~~l~~~---~--vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 82 -----------FTNLRKRGGALADLAILIVDINEGFKPQTQEALNILRMY---K--TPFVVAANKIDRIP 135 (590)
T ss_pred -----------HHHHHHHHHhhCCEEEEEEECCcCCCHhHHHHHHHHHHc---C--CCEEEEEECCCccc
Confidence 222233355678999999999877777777776655442 2 58999999999864
No 206
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.57 E-value=3e-14 Score=102.82 Aligned_cols=115 Identities=19% Similarity=0.248 Sum_probs=74.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccc-----------------------------ccccCCCCcceeeEEEEEEEeCCcEE
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVLKDGQVV 72 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~~~~ 72 (174)
.|+++|+.++|||||+.+|+..... .......+.|.......+.+ ++..+
T Consensus 1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~-~~~~i 79 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFET-EKYRF 79 (219)
T ss_pred CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEee-CCeEE
Confidence 3799999999999999998632110 01112235566666666666 77899
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624 73 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMIVVF 145 (174)
Q Consensus 73 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~~iv~ 145 (174)
.++||||+.+ +...+......+|++++|+|+++. ........+..... .+ .+|+++++
T Consensus 80 ~liDtpG~~~-----------~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~iiivv 144 (219)
T cd01883 80 TILDAPGHRD-----------FVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLART-LG---VKQLIVAV 144 (219)
T ss_pred EEEECCChHH-----------HHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHH-cC---CCeEEEEE
Confidence 9999999754 222222345667999999999853 22233343333322 11 15789999
Q ss_pred eCcCCCC
Q 030624 146 TGGDELE 152 (174)
Q Consensus 146 tk~D~~~ 152 (174)
||+|+..
T Consensus 145 NK~Dl~~ 151 (219)
T cd01883 145 NKMDDVT 151 (219)
T ss_pred Ecccccc
Confidence 9999973
No 207
>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=2e-14 Score=99.97 Aligned_cols=118 Identities=19% Similarity=0.120 Sum_probs=87.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+++++|.+|+|||-|+...+.........++.+....+....+.- +.....+|||.|+.+ ++.+..+
T Consensus 15 FKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~-k~vkaqIWDTAGQER-----------yrAitSa 82 (222)
T KOG0087|consen 15 FKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDG-KTVKAQIWDTAGQER-----------YRAITSA 82 (222)
T ss_pred EEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecC-cEEEEeeecccchhh-----------hccccch
Confidence 6799999999999999999988764333333333333333333322 334679999999997 6666677
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.++++.+.++|.|.+.+.+.+. ..|++.|++.... +.++++|.||+|+..
T Consensus 83 YYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~--nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 83 YYRGAVGALLVYDITRRQTFENVERWLKELRDHADS--NIVIMLVGNKSDLNH 133 (222)
T ss_pred hhcccceeEEEEechhHHHHHHHHHHHHHHHhcCCC--CeEEEEeecchhhhh
Confidence 8999999999999986666665 7888888886533 468999999999976
No 208
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.57 E-value=3e-14 Score=99.09 Aligned_cols=113 Identities=19% Similarity=0.076 Sum_probs=72.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-eeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-TCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~-~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
+++++|+.|+|||||++++.+....... ..|. .......... ....+.+|||||... +.....
T Consensus 2 k~~i~G~~~~GKtsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~~ 66 (173)
T cd04130 2 KCVLVGDGAVGKTSLIVSYTTNGYPTEY----VPTAFDNFSVVVLVDGKPVRLQLCDTAGQDE-----------FDKLRP 66 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCCC----CCceeeeeeEEEEECCEEEEEEEEECCCChh-----------hccccc
Confidence 6899999999999999999875532211 1121 1111122221 124678999999865 222233
Q ss_pred hccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.++..+|++++|+|.+++-+... ..|+..+.... . ..|++++.||+|+..
T Consensus 67 ~~~~~a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~~ 118 (173)
T cd04130 67 LCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRKHN-P--KAPIILVGTQADLRT 118 (173)
T ss_pred cccCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhhC-C--CCCEEEEeeChhhcc
Confidence 46678899999999985543333 34665555432 1 268999999999864
No 209
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.57 E-value=4.3e-14 Score=113.35 Aligned_cols=124 Identities=21% Similarity=0.276 Sum_probs=91.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~ 97 (174)
..+++++|.+|+|||||+|+|+|.... .| .-++.|.+.......+ +++.+.++|.||.++-.. ..+...+++.
T Consensus 3 ~~~valvGNPNvGKTtlFN~LTG~~q~-Vg-NwpGvTVEkkeg~~~~-~~~~i~ivDLPG~YSL~~~S~DE~Var~~l-- 77 (653)
T COG0370 3 KLTVALVGNPNVGKTTLFNALTGANQK-VG-NWPGVTVEKKEGKLKY-KGHEIEIVDLPGTYSLTAYSEDEKVARDFL-- 77 (653)
T ss_pred cceEEEecCCCccHHHHHHHHhccCce-ec-CCCCeeEEEEEEEEEe-cCceEEEEeCCCcCCCCCCCchHHHHHHHH--
Confidence 467999999999999999999998753 33 5677888877777777 777899999999997332 2233333332
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL 158 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~ 158 (174)
...++|+++-|+|++ .++..-.-.++.+.-. .|+++++|.+|..+..+..+
T Consensus 78 ---l~~~~D~ivnVvDAt-nLeRnLyltlQLlE~g------~p~ilaLNm~D~A~~~Gi~I 128 (653)
T COG0370 78 ---LEGKPDLIVNVVDAT-NLERNLYLTLQLLELG------IPMILALNMIDEAKKRGIRI 128 (653)
T ss_pred ---hcCCCCEEEEEcccc-hHHHHHHHHHHHHHcC------CCeEEEeccHhhHHhcCCcc
Confidence 257789999999999 6655555555433332 58999999999987654443
No 210
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.57 E-value=7.4e-14 Score=97.07 Aligned_cols=115 Identities=18% Similarity=0.098 Sum_probs=72.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|++|+|||||++.+++....... .+|.... ...+... ....+.++||||..+ +....
T Consensus 2 ~ki~iiG~~~~GKTsl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~~~ 66 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQFPEVY----VPTVFENYVADIEVDGKQVELALWDTAGQED-----------YDRLR 66 (175)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccccceEEEEEECCEEEEEEEEeCCCchh-----------hhhcc
Confidence 57999999999999999999986532211 1111111 1122231 123578999999765 22222
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+.++|++++|++.++.-+... ..++..+.... ...|++++.||+|+...
T Consensus 67 ~~~~~~~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 120 (175)
T cd01870 67 PLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC---PNVPIILVGNKKDLRND 120 (175)
T ss_pred ccccCCCCEEEEEEECCCHHHHHHHHHHHHHHHHhhC---CCCCEEEEeeChhcccC
Confidence 335678899999999884422222 23555454432 12699999999998653
No 211
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.56 E-value=3.9e-14 Score=112.55 Aligned_cols=121 Identities=13% Similarity=0.157 Sum_probs=81.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccc--------------ccc-----------------CCCCcceeeEEEEEEE
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRA-----------------SSSGVTSTCEMQRTVL 66 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~-----------------~~~~~t~~~~~~~~~~ 66 (174)
....+++++|+.++|||||++.|+.....- .|. ...+.|.........+
T Consensus 25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~ 104 (474)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (474)
T ss_pred cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence 445899999999999999999987543110 010 1124455555555555
Q ss_pred eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEe
Q 030624 67 KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 146 (174)
Q Consensus 67 ~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~t 146 (174)
++..+.++||||+.+ +.+........+|++++|+|+.+++...+.+.+..+... +. +++++++|
T Consensus 105 -~~~~i~~iDTPGh~~-----------f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~l-g~---~~iIvvvN 168 (474)
T PRK05124 105 -EKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLL-GI---KHLVVAVN 168 (474)
T ss_pred -CCcEEEEEECCCcHH-----------HHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHh-CC---CceEEEEE
Confidence 567899999999653 222222334778999999999877776666655444433 31 47899999
Q ss_pred CcCCCCCC
Q 030624 147 GGDELEDN 154 (174)
Q Consensus 147 k~D~~~~~ 154 (174)
|+|+.+.+
T Consensus 169 KiD~~~~~ 176 (474)
T PRK05124 169 KMDLVDYS 176 (474)
T ss_pred eeccccch
Confidence 99998543
No 212
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.56 E-value=1.2e-13 Score=99.92 Aligned_cols=116 Identities=19% Similarity=0.117 Sum_probs=75.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccC-------------CCCcceeeE------------------------EEEE
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRAS-------------SSGVTSTCE------------------------MQRT 64 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~-------------~~~~t~~~~------------------------~~~~ 64 (174)
+++++|+.++|||||++.++.... ..+.. ..+.|.... ....
T Consensus 1 ~v~~~G~~~~GKttl~~~~~~~~~-~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 79 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGEL-DNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEIC 79 (224)
T ss_pred CEEEECCCCCCHHHHHHHHHhCCc-CCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceee
Confidence 578999999999999999985322 11100 001111000 0011
Q ss_pred EEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEE
Q 030624 65 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 144 (174)
Q Consensus 65 ~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv 144 (174)
.. .+..+.++||||..+ ..+.....+. ...+|++++|+|+..++...+.+++..+.... .|++++
T Consensus 80 ~~-~~~~i~liDtpG~~~-------~~~~~~~~~~--~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~-----ip~ivv 144 (224)
T cd04165 80 EK-SSKLVTFIDLAGHER-------YLKTTLFGLT--GYAPDYAMLVVAANAGIIGMTKEHLGLALALN-----IPVFVV 144 (224)
T ss_pred ee-CCcEEEEEECCCcHH-------HHHHHHHhhc--ccCCCEEEEEEECCCCCcHHHHHHHHHHHHcC-----CCEEEE
Confidence 12 456789999999764 2222222211 13689999999998788888888888777653 589999
Q ss_pred EeCcCCCCC
Q 030624 145 FTGGDELED 153 (174)
Q Consensus 145 ~tk~D~~~~ 153 (174)
+||+|+...
T Consensus 145 vNK~D~~~~ 153 (224)
T cd04165 145 VTKIDLAPA 153 (224)
T ss_pred EECccccCH
Confidence 999998754
No 213
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.56 E-value=2.6e-14 Score=98.16 Aligned_cols=117 Identities=20% Similarity=0.212 Sum_probs=75.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
+|+++|+.|+|||||++.+.+...........+ ........... ....+.+||++|... +......
T Consensus 1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~l~i~D~~g~~~-----------~~~~~~~ 67 (162)
T PF00071_consen 1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIG--IDSYSKEVSIDGKPVNLEIWDTSGQER-----------FDSLRDI 67 (162)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSS--EEEEEEEEEETTEEEEEEEEEETTSGG-----------GHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHhhccccccccccc--ccccccccccccccccccccccccccc-----------ccccccc
Confidence 589999999999999999998763322211111 22222223331 223589999999764 2222234
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...++|++++|+|.+++-+... ..|+..+....... .|++++.||.|+...
T Consensus 68 ~~~~~~~~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~ 119 (162)
T PF00071_consen 68 FYRNSDAIIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDE 119 (162)
T ss_dssp HHTTESEEEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGG
T ss_pred ccccccccccccccccccccccccccccccccccccc--ccceeeecccccccc
Confidence 5677899999999984333322 56777777665422 589999999998763
No 214
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=99.56 E-value=4.8e-14 Score=97.53 Aligned_cols=115 Identities=19% Similarity=0.218 Sum_probs=68.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee--------------------------------------------
Q 030624 23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-------------------------------------------- 58 (174)
Q Consensus 23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-------------------------------------------- 58 (174)
|+++|..++|||||+|+|+|......+.........
T Consensus 1 V~v~G~~ssGKSTliNaLlG~~ilp~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (168)
T PF00350_consen 1 VAVVGQFSSGKSTLINALLGRPILPSGVGPCTAVPTEISYGDEPEIEHEEAIIEFKDGSEEFEELNELREQIDEEFDSIE 80 (168)
T ss_dssp EEEEEBTTSSHHHHHHHHHTSS-SSSSSSSTTSSEEEEEEEESSSCCTSEEEECEEEETEEBCCHHHHHHHHHHHHHHHH
T ss_pred CEEEcCCCCCHHHHHHHHHhcccCcccccccccceeEEEecccCccccccccccccccccchhhHHHHHHhhhccccccc
Confidence 689999999999999999998754444221100000
Q ss_pred ---------eEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHH
Q 030624 59 ---------CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSL 129 (174)
Q Consensus 59 ---------~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l 129 (174)
.............+.++||||+.+...... ..+..++..+|++|+|++++..++..+...+...
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~lvDtPG~~~~~~~~~-------~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~ 153 (168)
T PF00350_consen 81 GKLEQISSKVIVISISSPLLRNLTLVDTPGLNSTNSEHT-------EITEEYLPKADVVIFVVDANQDLTESDMEFLKQM 153 (168)
T ss_dssp TSSS-S-SSEEEEEEEETTSCSEEEEEEEEBHSSHTTTS-------HHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHH
T ss_pred ccccccccceeEEeeccccccceEEEeCCccccchhhhH-------HHHHHhhccCCEEEEEeccCcccchHHHHHHHHH
Confidence 000001111234589999999976332222 3333344778999999999865665554443322
Q ss_pred HHHHhhhhcCcEEEEEeCc
Q 030624 130 QTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 130 ~~~~~~~~~~~~~iv~tk~ 148 (174)
... . ...+++|+||+
T Consensus 154 ~~~---~-~~~~i~V~nk~ 168 (168)
T PF00350_consen 154 LDP---D-KSRTIFVLNKA 168 (168)
T ss_dssp HTT---T-CSSEEEEEE-G
T ss_pred hcC---C-CCeEEEEEcCC
Confidence 221 1 14688999985
No 215
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.55 E-value=4e-14 Score=116.34 Aligned_cols=121 Identities=14% Similarity=0.162 Sum_probs=81.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccc--------------ccc-----------------CCCCcceeeEEEEE
Q 030624 16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRA-----------------SSSGVTSTCEMQRT 64 (174)
Q Consensus 16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~-----------------~~~~~t~~~~~~~~ 64 (174)
+..+..+++++|+.++|||||++.|+.....- .|. ...+.|........
T Consensus 20 ~~~~~~~i~iiGh~~~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~ 99 (632)
T PRK05506 20 ERKSLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYF 99 (632)
T ss_pred cCCCeeEEEEECCCCCChHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEE
Confidence 33445889999999999999999998643210 110 01234444444555
Q ss_pred EEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEE
Q 030624 65 VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 144 (174)
Q Consensus 65 ~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv 144 (174)
.+ ++..+.++||||+.+ ....+. .....+|++++|+|+.++....+.+.+..+... +. ++++++
T Consensus 100 ~~-~~~~~~liDtPG~~~-------f~~~~~----~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~-~~---~~iivv 163 (632)
T PRK05506 100 AT-PKRKFIVADTPGHEQ-------YTRNMV----TGASTADLAIILVDARKGVLTQTRRHSFIASLL-GI---RHVVLA 163 (632)
T ss_pred cc-CCceEEEEECCChHH-------HHHHHH----HHHHhCCEEEEEEECCCCccccCHHHHHHHHHh-CC---CeEEEE
Confidence 55 667899999999653 222222 345677999999999877777766666555443 21 478899
Q ss_pred EeCcCCCC
Q 030624 145 FTGGDELE 152 (174)
Q Consensus 145 ~tk~D~~~ 152 (174)
+||+|+..
T Consensus 164 vNK~D~~~ 171 (632)
T PRK05506 164 VNKMDLVD 171 (632)
T ss_pred EEeccccc
Confidence 99999975
No 216
>PRK09866 hypothetical protein; Provisional
Probab=99.55 E-value=3.4e-13 Score=108.25 Aligned_cols=85 Identities=18% Similarity=0.243 Sum_probs=58.9
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 149 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D 149 (174)
..+.++||||+.... ...+.+.+.+ .+..+|+|+||+|+....+..+...++.+++. ++. .|+++|+||+|
T Consensus 230 ~QIIFVDTPGIhk~~--~~~L~k~M~e----qL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~-~K~--~PVILVVNKID 300 (741)
T PRK09866 230 GQLTLLDTPGPNEAG--QPHLQKMLNQ----QLARASAVLAVLDYTQLKSISDEEVREAILAV-GQS--VPLYVLVNKFD 300 (741)
T ss_pred CCEEEEECCCCCCcc--chHHHHHHHH----HHhhCCEEEEEEeCCCCCChhHHHHHHHHHhc-CCC--CCEEEEEEccc
Confidence 457999999998632 1223334444 35667999999999866888888888777764 211 38999999999
Q ss_pred CCCCC---hhhHHHHhc
Q 030624 150 ELEDN---DETLEDYLG 163 (174)
Q Consensus 150 ~~~~~---~~~~~~~~~ 163 (174)
..+.. .+.+.++++
T Consensus 301 l~dreeddkE~Lle~V~ 317 (741)
T PRK09866 301 QQDRNSDDADQVRALIS 317 (741)
T ss_pred CCCcccchHHHHHHHHH
Confidence 97532 134555554
No 217
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.54 E-value=6.3e-14 Score=99.70 Aligned_cols=109 Identities=17% Similarity=0.054 Sum_probs=72.8
Q ss_pred EcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 030624 26 VGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 102 (174)
Q Consensus 26 ~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~ 102 (174)
+|..|+|||||++.++..... .. ...|....+. .+.+. ....+.+|||||... +......++
T Consensus 1 vG~~~vGKTsLi~r~~~~~f~-~~---~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G~e~-----------~~~l~~~~~ 65 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEFE-KK---YVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEK-----------FGGLRDGYY 65 (200)
T ss_pred CCCCCCCHHHHHHHHhcCCCC-CC---CCCceeEEEEEEEEEECCEEEEEEEEECCCchh-----------hhhhhHHHh
Confidence 599999999999999865432 11 1223322222 22221 235789999999876 344444567
Q ss_pred CCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 103 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 103 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
..+|++++|+|.+++.+... ..|++.+.+.. . ..|+++|.||+|+..
T Consensus 66 ~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~-~--~~piilvgNK~Dl~~ 113 (200)
T smart00176 66 IQGQCAIIMFDVTARVTYKNVPNWHRDLVRVC-E--NIPIVLCGNKVDVKD 113 (200)
T ss_pred cCCCEEEEEEECCChHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccccc
Confidence 88899999999986544443 45666666643 2 259999999999854
No 218
>PRK13351 elongation factor G; Reviewed
Probab=99.54 E-value=8.1e-14 Score=115.63 Aligned_cols=119 Identities=18% Similarity=0.229 Sum_probs=83.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc--ccc--------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAF--KSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~--~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 82 (174)
..++|+++|+.|+|||||+++|+..... ..+ ....+.|.........| ++..+.+|||||..+
T Consensus 7 ~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~-~~~~i~liDtPG~~d 85 (687)
T PRK13351 7 QIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDW-DNHRINLIDTPGHID 85 (687)
T ss_pred cccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEE-CCEEEEEEECCCcHH
Confidence 4489999999999999999999753210 000 01134455555566667 778999999999875
Q ss_pred CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
+...+..++..+|++++|+|++++....+...++.+... . .|+++++||+|+...+
T Consensus 86 -----------f~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~~~~~~~~---~--~p~iiviNK~D~~~~~ 141 (687)
T PRK13351 86 -----------FTGEVERSLRVLDGAVVVFDAVTGVQPQTETVWRQADRY---G--IPRLIFINKMDRVGAD 141 (687)
T ss_pred -----------HHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhc---C--CCEEEEEECCCCCCCC
Confidence 222333455666999999999877777766666554443 2 6899999999998753
No 219
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.54 E-value=9.3e-14 Score=93.24 Aligned_cols=113 Identities=21% Similarity=0.206 Sum_probs=69.8
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 25 LVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 25 i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
++|++|+|||||+|++.+....... ...|. ......... ....+.++|+||.... .......
T Consensus 1 iiG~~~~GKStl~~~l~~~~~~~~~---~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~-----------~~~~~~~ 65 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGEFVPEE---YETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERF-----------RSLRRLY 65 (157)
T ss_pred CCCcCCCcHHHHHHHHHhCCcCCcc---cccch-hheeeEEEEECCEEEEEEEEecCChHHH-----------HhHHHHH
Confidence 5799999999999999987652111 11222 222222221 2457899999998762 1222345
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHH--HHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEEEAAL--HSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~~~~l--~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
...+|++++|+|+++.......... ..+... .....|+++++||+|+....
T Consensus 66 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 66 YRGADGIILVYDVTDRESFENVKEWLLLILINK--EGENIPIILVGNKIDLPEER 118 (157)
T ss_pred hcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhh--ccCCCcEEEEEecccccccc
Confidence 6778999999999854333332221 112221 22336999999999997653
No 220
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.54 E-value=5e-15 Score=102.68 Aligned_cols=120 Identities=15% Similarity=0.245 Sum_probs=69.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE--eCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
...++++|++|||||+|+..|........- ++. ..+. .... .....+.++|+||..+-. ..+.+.
T Consensus 3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~-tS~----e~n~-~~~~~~~~~~~~~lvD~PGH~rlr-------~~~~~~ 69 (181)
T PF09439_consen 3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTV-TSM----ENNI-AYNVNNSKGKKLRLVDIPGHPRLR-------SKLLDE 69 (181)
T ss_dssp --EEEEE-STTSSHHHHHHHHHHSS---B----S----SEEE-ECCGSSTCGTCECEEEETT-HCCC-------HHHHHH
T ss_pred CceEEEEcCCCCCHHHHHHHHhcCCcCCee-ccc----cCCc-eEEeecCCCCEEEEEECCCcHHHH-------HHHHHh
Confidence 468999999999999999999876432111 111 1111 1111 135678999999998722 122222
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh----hcCcEEEEEeCcCCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK----IFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~----~~~~~~iv~tk~D~~~~~ 154 (174)
.. ....+.+|+||+|.+ .....-++..+.|.+.+... ...|++|+.||.|+....
T Consensus 70 ~~-~~~~~k~IIfvvDSs-~~~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 70 LK-YLSNAKGIIFVVDSS-TDQKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HH-HHGGEEEEEEEEETT-THHHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hh-chhhCCEEEEEEeCc-cchhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 11 244579999999987 44344455555555554432 235899999999998753
No 221
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.54 E-value=1.3e-13 Score=111.98 Aligned_cols=115 Identities=18% Similarity=0.207 Sum_probs=74.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEEEe---------------CCcEEEEEeCCCCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK---------------DGQVVNVIDTPGLF 81 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~---------------~~~~~~~iDtpG~~ 81 (174)
+.+.|+++|+.++|||||+++|.+....... ..+.|...... ...+. +-..+.++||||+.
T Consensus 5 R~p~V~i~Gh~~~GKTSLl~~l~~~~v~~~~--~g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e 82 (586)
T PRK04004 5 RQPIVVVLGHVDHGKTTLLDKIRGTAVAAKE--AGGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE 82 (586)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCcccccCC--CCceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence 4578999999999999999999886532211 11111111111 00000 00126899999987
Q ss_pred CCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 82 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
++ .......+..+|++++|+|+++++...+.+.+..+... ..|+++++||+|+.
T Consensus 83 ~f-----------~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~-----~vpiIvviNK~D~~ 136 (586)
T PRK04004 83 AF-----------TNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRR-----KTPFVVAANKIDRI 136 (586)
T ss_pred HH-----------HHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHc-----CCCEEEEEECcCCc
Confidence 62 22222345667999999999877878877777655442 25899999999985
No 222
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.53 E-value=1.1e-13 Score=109.29 Aligned_cols=116 Identities=19% Similarity=0.229 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc--c---------------------------ccccCCCCcceeeEEEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRA--F---------------------------KSRASSSGVTSTCEMQRTVLKDG 69 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~--~---------------------------~~~~~~~~~t~~~~~~~~~~~~~ 69 (174)
+..+++++|+.++|||||+..|+.... . ...+...+.|.........+ ++
T Consensus 6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~-~~ 84 (446)
T PTZ00141 6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (446)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEcc-CC
Confidence 347899999999999999998864210 0 00112235566665566666 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-------CHHHHHHHHHHHHHHhhhhcCcEE
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYMI 142 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~~ 142 (174)
..+.++||||+.+ +.......+..+|++++|+|+.++. ...+++.+..+... +. ++++
T Consensus 85 ~~i~lIDtPGh~~-----------f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~-gi---~~ii 149 (446)
T PTZ00141 85 YYFTIIDAPGHRD-----------FIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTL-GV---KQMI 149 (446)
T ss_pred eEEEEEECCChHH-----------HHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHc-CC---CeEE
Confidence 7899999999775 4444444566789999999998664 35667776655543 22 3578
Q ss_pred EEEeCcCC
Q 030624 143 VVFTGGDE 150 (174)
Q Consensus 143 iv~tk~D~ 150 (174)
+++||+|.
T Consensus 150 v~vNKmD~ 157 (446)
T PTZ00141 150 VCINKMDD 157 (446)
T ss_pred EEEEcccc
Confidence 99999995
No 223
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.53 E-value=1.9e-13 Score=102.67 Aligned_cols=134 Identities=22% Similarity=0.368 Sum_probs=90.7
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc----cCC--CCcceeeEEEEEEEeCC---cEEEEEeCCCCCCCCC
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR----ASS--SGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSA 85 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~----~~~--~~~t~~~~~~~~~~~~~---~~~~~iDtpG~~~~~~ 85 (174)
...|-..+++++|++|.|||||+|+|++...-... ... ...+............+ ..+.++|||||.++..
T Consensus 18 ~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id 97 (373)
T COG5019 18 SKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID 97 (373)
T ss_pred HhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc
Confidence 44466689999999999999999999987432221 111 12333333333333222 3689999999998655
Q ss_pred ChH-------HHHHHHHHHHH----------hccCCceEEEEEEeC-CCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 86 GSE-------FVGKEIVKCIG----------MAKDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 86 ~~~-------~~~~~~~~~~~----------~~~~~~~~il~v~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
... .+..++..++. ....++|++||.+.. ..++.+.+.+.|+.|.+.. ++|-|+.|
T Consensus 98 Ns~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~v------NlIPVI~K 171 (373)
T COG5019 98 NSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRV------NLIPVIAK 171 (373)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhccc------Ceeeeeec
Confidence 322 11222332221 124568999999976 4479999999999888875 89999999
Q ss_pred cCCCCCC
Q 030624 148 GDELEDN 154 (174)
Q Consensus 148 ~D~~~~~ 154 (174)
+|.+..+
T Consensus 172 aD~lT~~ 178 (373)
T COG5019 172 ADTLTDD 178 (373)
T ss_pred cccCCHH
Confidence 9999873
No 224
>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=1.5e-13 Score=95.81 Aligned_cols=122 Identities=16% Similarity=0.119 Sum_probs=89.9
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
.....+++++|.+|+|||+++-.+........-. ...........+... ....+.+|||.|..+ ++
T Consensus 9 ~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~--sTiGIDFk~kti~l~g~~i~lQiWDtaGQer-----------f~ 75 (207)
T KOG0078|consen 9 YDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFI--STIGIDFKIKTIELDGKKIKLQIWDTAGQER-----------FR 75 (207)
T ss_pred cceEEEEEEECCCCCchhHhhhhhhhccCcCCcc--ceEEEEEEEEEEEeCCeEEEEEEEEcccchh-----------HH
Confidence 3344899999999999999999988776432222 222333334444441 123579999999998 77
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....++++|+++++|+|.++.-+.+. ..|++.+.+..... .+.++|.||+|....
T Consensus 76 ti~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~ 132 (207)
T KOG0078|consen 76 TITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEK 132 (207)
T ss_pred HHHHHHHhhcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeecccccccc
Confidence 777788899999999999986555554 67999999976554 589999999999764
No 225
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.53 E-value=1.3e-13 Score=108.65 Aligned_cols=118 Identities=20% Similarity=0.278 Sum_probs=77.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc-c-------------c---------------ccCCCCcceeeEEEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAF-K-------------S---------------RASSSGVTSTCEMQRTVLKDG 69 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~-~-------------~---------------~~~~~~~t~~~~~~~~~~~~~ 69 (174)
+..+++++|+.++|||||++.|+..... . . .....+.|.......+.+ .+
T Consensus 6 ~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~-~~ 84 (426)
T TIGR00483 6 EHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFET-DK 84 (426)
T ss_pred ceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEcc-CC
Confidence 3478999999999999999999742110 0 0 011235566666666665 56
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC---CCHHHHHHHHHHHHHHhhhhcCcEEEEEe
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR---FSQEEEAALHSLQTLFGKKIFDYMIVVFT 146 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~---~~~~~~~~l~~l~~~~~~~~~~~~~iv~t 146 (174)
..+.++||||+.+ +.......+..+|++++|+|++++ ........+.... ..+ .+++++++|
T Consensus 85 ~~i~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~-~~~---~~~iIVviN 149 (426)
T TIGR00483 85 YEVTIVDCPGHRD-----------FIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLAR-TLG---INQLIVAIN 149 (426)
T ss_pred eEEEEEECCCHHH-----------HHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHH-HcC---CCeEEEEEE
Confidence 7899999999654 333333345678999999999866 3333333333232 222 147899999
Q ss_pred CcCCCC
Q 030624 147 GGDELE 152 (174)
Q Consensus 147 k~D~~~ 152 (174)
|+|+..
T Consensus 150 K~Dl~~ 155 (426)
T TIGR00483 150 KMDSVN 155 (426)
T ss_pred ChhccC
Confidence 999975
No 226
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.53 E-value=2.3e-13 Score=97.91 Aligned_cols=117 Identities=20% Similarity=0.097 Sum_probs=71.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE---eCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL---KDGQVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
...+++++|++|||||||++.++........ ..|....+....+ .....+.++||+|.... .
T Consensus 8 ~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~~~~-----------~ 72 (215)
T PTZ00132 8 PEFKLILVGDGGVGKTTFVKRHLTGEFEKKY----IPTLGVEVHPLKFYTNCGPICFNVWDTAGQEKF-----------G 72 (215)
T ss_pred CCceEEEECCCCCCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEEECCeEEEEEEEECCCchhh-----------h
Confidence 3478999999999999999654433221111 1222222222211 12346789999997542 2
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......+..++++++|+|.+++.+... ..++..+.... . ..|++++.||+|+...
T Consensus 73 ~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~--~~~i~lv~nK~Dl~~~ 128 (215)
T PTZ00132 73 GLRDGYYIKGQCAIIMFDVTSRITYKNVPNWHRDIVRVC-E--NIPIVLVGNKVDVKDR 128 (215)
T ss_pred hhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-C--CCCEEEEEECccCccc
Confidence 222334567799999999985554443 45555555442 2 2588899999998543
No 227
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.53 E-value=2.3e-13 Score=110.76 Aligned_cols=118 Identities=20% Similarity=0.253 Sum_probs=78.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc------cccc-------CCCCcceeeEEEEEEEe--C--CcEEEEEeCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAF------KSRA-------SSSGVTSTCEMQRTVLK--D--GQVVNVIDTPGLFD 82 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~------~~~~-------~~~~~t~~~~~~~~~~~--~--~~~~~~iDtpG~~~ 82 (174)
-++++++|+.++|||||+++|+..... .... ...+.|.........|. + ...+.+|||||+.+
T Consensus 3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~d 82 (595)
T TIGR01393 3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVD 82 (595)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcHH
Confidence 378999999999999999999864210 0100 11245555444445442 1 25689999999986
Q ss_pred CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+ ...+..++..+|++++|+|++++....+...+..+.+ .. .|+++++||+|+...
T Consensus 83 F-----------~~~v~~~l~~aD~aILVvDat~g~~~qt~~~~~~~~~---~~--ipiIiViNKiDl~~~ 137 (595)
T TIGR01393 83 F-----------SYEVSRSLAACEGALLLVDAAQGIEAQTLANVYLALE---ND--LEIIPVINKIDLPSA 137 (595)
T ss_pred H-----------HHHHHHHHHhCCEEEEEecCCCCCCHhHHHHHHHHHH---cC--CCEEEEEECcCCCcc
Confidence 2 2223334556799999999987777776554433332 12 589999999998654
No 228
>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.53 E-value=3.8e-13 Score=101.61 Aligned_cols=137 Identities=20% Similarity=0.252 Sum_probs=91.8
Q ss_pred ccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc-----ccCCCCcceeeEEEEEEEeC---CcEEEEEeCCCCCCC
Q 030624 12 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----RASSSGVTSTCEMQRTVLKD---GQVVNVIDTPGLFDF 83 (174)
Q Consensus 12 ~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~-----~~~~~~~t~~~~~~~~~~~~---~~~~~~iDtpG~~~~ 83 (174)
......|-...+.++|++|.|||||+|+|++...... .......|............ ..++.++|||||.++
T Consensus 13 r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~ 92 (366)
T KOG2655|consen 13 RKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDA 92 (366)
T ss_pred HHHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCccc
Confidence 3445566668999999999999999999988743211 11111123333333333312 236899999999986
Q ss_pred CCCh-------HHHHHHHHHHHHh---------ccCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEe
Q 030624 84 SAGS-------EFVGKEIVKCIGM---------AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 146 (174)
Q Consensus 84 ~~~~-------~~~~~~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~t 146 (174)
.... +.+..++..++.. .-.++|++||.+..+ .++.+.+...++.+.... +++-|+.
T Consensus 93 vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~v------NiIPVI~ 166 (366)
T KOG2655|consen 93 VDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKV------NLIPVIA 166 (366)
T ss_pred ccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhccc------cccceee
Confidence 5532 1223334433322 123789999999874 369999999999888875 8899999
Q ss_pred CcCCCCCC
Q 030624 147 GGDELEDN 154 (174)
Q Consensus 147 k~D~~~~~ 154 (174)
|+|.+.++
T Consensus 167 KaD~lT~~ 174 (366)
T KOG2655|consen 167 KADTLTKD 174 (366)
T ss_pred ccccCCHH
Confidence 99999873
No 229
>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=2.7e-13 Score=92.64 Aligned_cols=120 Identities=15% Similarity=0.133 Sum_probs=87.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..++.++|..|+|||.|+...+.....+.-..+.+ .+.....+.. .++.++.+|||.|+.. ++...
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiG--vefg~r~~~id~k~IKlqiwDtaGqe~-----------frsv~ 72 (216)
T KOG0098|consen 6 LFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIG--VEFGARMVTIDGKQIKLQIWDTAGQES-----------FRSVT 72 (216)
T ss_pred eEEEEEECCCCccHHHHHHHHhccCccccccceee--eeeceeEEEEcCceEEEEEEecCCcHH-----------HHHHH
Confidence 37899999999999999999998774322222222 2222222222 1345789999999987 77888
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
+.+++.+.++|+|.|.+.+-+... ..||..+++...+. .-++++.||+|+....
T Consensus 73 ~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 73 RSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARR 127 (216)
T ss_pred HHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccc
Confidence 889999999999999986655554 78888888875333 4688999999997543
No 230
>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]
Probab=99.52 E-value=5.5e-13 Score=89.27 Aligned_cols=114 Identities=15% Similarity=0.212 Sum_probs=89.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
+.||+++|..||||||+++.+.+... ....+|...+.....+ +...+.++|.-|... ++++++
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~-----~~i~pt~gf~Iktl~~-~~~~L~iwDvGGq~~-----------lr~~W~ 78 (185)
T KOG0073|consen 16 EVRILILGLDNSGKTTIVKKLLGEDT-----DTISPTLGFQIKTLEY-KGYTLNIWDVGGQKT-----------LRSYWK 78 (185)
T ss_pred eeEEEEEecCCCCchhHHHHhcCCCc-----cccCCccceeeEEEEe-cceEEEEEEcCCcch-----------hHHHHH
Confidence 58999999999999999999999762 3455677777888877 889999999999887 889999
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhh-hh-cCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK-KI-FDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~-~~-~~~~~iv~tk~D~~~ 152 (174)
.++...|++++|+|.+++.-.+ +....+++.+.. +. ..+++++.||.|+..
T Consensus 79 nYfestdglIwvvDssD~~r~~--e~~~~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 79 NYFESTDGLIWVVDSSDRMRMQ--ECKQELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred HhhhccCeEEEEEECchHHHHH--HHHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 9999999999999987543333 233334444433 22 258999999999973
No 231
>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.51 E-value=2.6e-13 Score=89.59 Aligned_cols=118 Identities=18% Similarity=0.194 Sum_probs=87.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+|+++|..|+|||.|++.++....|++.....+...- +..++.. .+..+.+|||.|..+ ++.+..
T Consensus 8 fkivlvgnagvgktclvrrftqglfppgqgatigvdfm--iktvev~gekiklqiwdtagqer-----------frsitq 74 (213)
T KOG0095|consen 8 FKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFM--IKTVEVNGEKIKLQIWDTAGQER-----------FRSITQ 74 (213)
T ss_pred EEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEE--EEEEEECCeEEEEEEeeccchHH-----------HHHHHH
Confidence 68999999999999999999987755443222222211 2222321 245689999999987 777777
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++.+|+++++.|.+...+... .+|+..|.++...++ -.++|.||.|+.+.
T Consensus 75 syyrsahalilvydiscqpsfdclpewlreie~yan~kv--lkilvgnk~d~~dr 127 (213)
T KOG0095|consen 75 SYYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKV--LKILVGNKIDLADR 127 (213)
T ss_pred HHhhhcceEEEEEecccCcchhhhHHHHHHHHHHhhcce--EEEeeccccchhhh
Confidence 78888999999999986666655 899999999876553 56899999999765
No 232
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.50 E-value=3.2e-13 Score=105.79 Aligned_cols=124 Identities=15% Similarity=0.236 Sum_probs=78.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCcceeeEEEEEEEe-------------------------C
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVLK-------------------------D 68 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~-------------------------~ 68 (174)
....+..+++++|+.++|||||+.+|++.... ...+...+.|....+....+. .
T Consensus 4 ~~~~~~~ni~v~Gh~d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (411)
T PRK04000 4 EKVQPEVNIGMVGHVDHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETEL 83 (411)
T ss_pred ccCCCcEEEEEEccCCCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccc
Confidence 34455689999999999999999999774211 011112334443332111110 0
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 69 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
...+.++||||..+ +...+......+|++++|+|++++. ...+...+..+... + .+++++|+||
T Consensus 84 ~~~i~liDtPG~~~-----------f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~-~---i~~iiVVlNK 148 (411)
T PRK04000 84 LRRVSFVDAPGHET-----------LMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDII-G---IKNIVIVQNK 148 (411)
T ss_pred ccEEEEEECCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-C---CCcEEEEEEe
Confidence 25789999999653 3333333445679999999998665 56666666555432 2 1468999999
Q ss_pred cCCCCC
Q 030624 148 GDELED 153 (174)
Q Consensus 148 ~D~~~~ 153 (174)
+|+...
T Consensus 149 ~Dl~~~ 154 (411)
T PRK04000 149 IDLVSK 154 (411)
T ss_pred eccccc
Confidence 999864
No 233
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.50 E-value=4.7e-13 Score=109.05 Aligned_cols=118 Identities=19% Similarity=0.243 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc-cc---c---------cCCCCcceeeEEEEEEEe----CCcEEEEEeCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAF-KS---R---------ASSSGVTSTCEMQRTVLK----DGQVVNVIDTPGLFD 82 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~-~~---~---------~~~~~~t~~~~~~~~~~~----~~~~~~~iDtpG~~~ 82 (174)
-+.++++|+.++|||||+.+|+..... .. + +...+.|.........|. +...+.+|||||+.+
T Consensus 7 iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh~d 86 (600)
T PRK05433 7 IRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGHVD 86 (600)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCcHH
Confidence 478999999999999999999753211 00 0 112244544444444442 145789999999987
Q ss_pred CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+ ...+..++..+|++++|+|++++....+...+..+.. .. .|+++|+||+|+...
T Consensus 87 F-----------~~~v~~sl~~aD~aILVVDas~gv~~qt~~~~~~~~~---~~--lpiIvViNKiDl~~a 141 (600)
T PRK05433 87 F-----------SYEVSRSLAACEGALLVVDASQGVEAQTLANVYLALE---ND--LEIIPVLNKIDLPAA 141 (600)
T ss_pred H-----------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH---CC--CCEEEEEECCCCCcc
Confidence 2 2222334456699999999987777766555443332 12 589999999998654
No 234
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.49 E-value=3.6e-13 Score=94.85 Aligned_cols=113 Identities=19% Similarity=0.161 Sum_probs=70.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+++++|++|+|||||++.+......... ..|.... ...... .+ ..+.++||||...... .
T Consensus 2 ~Ki~ivG~~g~GKStLl~~l~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~~-----------~ 65 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEFPEEY----HPTVFENYVTDCRV-DGKPVQLALWDTAGQEEYER-----------L 65 (187)
T ss_pred eEEEEECCCCCCHHHHHHHHHhCCCCccc----CCcccceEEEEEEE-CCEEEEEEEEECCCChhccc-----------c
Confidence 58999999999999999999854432211 1121111 112222 22 3468999999765321 1
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
....+..+|+++++++.++.-+... ..|++.+..... . .|+++|.||+|+..
T Consensus 66 ~~~~~~~a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~-~--~piilvgnK~Dl~~ 119 (187)
T cd04129 66 RPLSYSKAHVILIGFAVDTPDSLENVRTKWIEEVRRYCP-N--VPVILVGLKKDLRQ 119 (187)
T ss_pred chhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhhh
Confidence 1123567899999999874332222 346666665432 2 69999999999854
No 235
>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]
Probab=99.49 E-value=2.9e-13 Score=90.40 Aligned_cols=118 Identities=17% Similarity=0.129 Sum_probs=82.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+|+++|.+|+|||||+-.+.....-+......+.........+.- +...+.+|||+|..+ ++.....
T Consensus 12 ~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg-~~~KlaiWDTAGqEr-----------FRtLTpS 79 (209)
T KOG0080|consen 12 FKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDG-KRLKLAIWDTAGQER-----------FRTLTPS 79 (209)
T ss_pred EEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcC-ceEEEEEEeccchHh-----------hhccCHh
Confidence 8899999999999999999887653222222223233333333322 456789999999998 6666677
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
+++++.++|+|.|.+.+-+... .-|++.+..+...+. .-.++|.||+|.-
T Consensus 80 yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~d-iikmlVgNKiDke 130 (209)
T KOG0080|consen 80 YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPD-IIKMLVGNKIDKE 130 (209)
T ss_pred HhccCceeEEEEEccchhhHHhHHHHHHHHHhhcCCcc-HhHhhhcccccch
Confidence 8999999999999985443333 567777777754431 2346899999975
No 236
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.48 E-value=3.3e-13 Score=105.61 Aligned_cols=120 Identities=16% Similarity=0.224 Sum_probs=75.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEE--------------E-----------eCCcEE
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTV--------------L-----------KDGQVV 72 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~--------------~-----------~~~~~~ 72 (174)
+..+|+++|+.++|||||+++|++..... ......+.|....+.... . .....+
T Consensus 3 ~~~~i~iiG~~~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 82 (406)
T TIGR03680 3 PEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRV 82 (406)
T ss_pred ceEEEEEEccCCCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEE
Confidence 34789999999999999999998742111 001111222222211110 0 013578
Q ss_pred EEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 73 NVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 73 ~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
.++||||..+ +...+...+..+|++++|+|++++. ...+.+.+..+... +. +++++++||+|+.
T Consensus 83 ~liDtPGh~~-----------f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~-gi---~~iIVvvNK~Dl~ 147 (406)
T TIGR03680 83 SFVDAPGHET-----------LMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEII-GI---KNIVIVQNKIDLV 147 (406)
T ss_pred EEEECCCHHH-----------HHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHc-CC---CeEEEEEEccccC
Confidence 9999999764 2233333445679999999998665 55666666655332 21 4789999999997
Q ss_pred CC
Q 030624 152 ED 153 (174)
Q Consensus 152 ~~ 153 (174)
..
T Consensus 148 ~~ 149 (406)
T TIGR03680 148 SK 149 (406)
T ss_pred CH
Confidence 64
No 237
>PTZ00416 elongation factor 2; Provisional
Probab=99.48 E-value=3.1e-13 Score=113.88 Aligned_cols=119 Identities=17% Similarity=0.203 Sum_probs=82.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccc----cc----------cCCCCcceeeEEEEEEEe---------CCcEEE
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFK----SR----------ASSSGVTSTCEMQRTVLK---------DGQVVN 73 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~----~~----------~~~~~~t~~~~~~~~~~~---------~~~~~~ 73 (174)
..+.++|+++|+.++|||||+++|+...... .+ ....+.|.........|. ++..+.
T Consensus 16 ~~~irni~iiGh~d~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~ 95 (836)
T PTZ00416 16 PDQIRNMSVIAHVDHGKSTLTDSLVCKAGIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN 95 (836)
T ss_pred ccCcCEEEEECCCCCCHHHHHHHHHHhcCCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence 4455899999999999999999998632110 00 011133333333333442 145689
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 74 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 74 ~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
++||||+.+ +...+..+...+|++++|+|+.+++...+...++.+.+.. .|+++++||+|+.
T Consensus 96 liDtPG~~~-----------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~-----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 96 LIDSPGHVD-----------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQER-----IRPVLFINKVDRA 157 (836)
T ss_pred EEcCCCHHh-----------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcC-----CCEEEEEEChhhh
Confidence 999999986 3333444567779999999998889888887776665542 5899999999997
No 238
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.48 E-value=7.5e-13 Score=95.30 Aligned_cols=117 Identities=17% Similarity=0.149 Sum_probs=82.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-eC--CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+|+++|+.|+|||||++++.+........ .|.......... .. ...+.+|||+|+.+ +...
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~----~t~~~~~~~~~~~~~~~~~~~~~~Dt~gq~~-----------~~~~ 70 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYP----PTIGNLDPAKTIEPYRRNIKLQLWDTAGQEE-----------YRSL 70 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccCC----CceeeeeEEEEEEeCCCEEEEEeecCCCHHH-----------HHHH
Confidence 799999999999999999999887543321 222222222211 11 34578999999987 6677
Q ss_pred HHhccCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
+...+.++++++++++... +.......+...+....... .+++++.||+|+....
T Consensus 71 ~~~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 71 RPEYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDEQ 127 (219)
T ss_pred HHHHhcCCCEEEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccch
Confidence 7778899999999998873 33333466666666654322 5899999999998763
No 239
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.47 E-value=2.9e-12 Score=92.82 Aligned_cols=111 Identities=19% Similarity=0.143 Sum_probs=73.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+...|+++|++|+|||||+|.|++....... .....+. . .....+..+.++||||.. ..+.+.
T Consensus 37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~-~~~~g~i----~-i~~~~~~~i~~vDtPg~~----------~~~l~~ 100 (225)
T cd01882 37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNI-SDIKGPI----T-VVTGKKRRLTFIECPNDI----------NAMIDI 100 (225)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcccCcc-ccccccE----E-EEecCCceEEEEeCCchH----------HHHHHH
Confidence 34478999999999999999999875321111 1111111 1 111256788999999742 223333
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~~ 153 (174)
+ ..+|++++++|+...+...+..++..+.... .| +++++||+|+..+
T Consensus 101 a----k~aDvVllviDa~~~~~~~~~~i~~~l~~~g-----~p~vi~VvnK~D~~~~ 148 (225)
T cd01882 101 A----KVADLVLLLIDASFGFEMETFEFLNILQVHG-----FPRVMGVLTHLDLFKK 148 (225)
T ss_pred H----HhcCEEEEEEecCcCCCHHHHHHHHHHHHcC-----CCeEEEEEeccccCCc
Confidence 3 4459999999998778777777776665531 34 4569999999754
No 240
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.46 E-value=3e-13 Score=112.49 Aligned_cols=118 Identities=19% Similarity=0.269 Sum_probs=77.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcc--------------cccccCCCCcceeeEEEE----EEEeCCcEEEEEeCCC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRA--------------FKSRASSSGVTSTCEMQR----TVLKDGQVVNVIDTPG 79 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~--------------~~~~~~~~~~t~~~~~~~----~~~~~~~~~~~iDtpG 79 (174)
...++|+++|+.++|||||++.|+.... +.......+.|....... ..+ ++..+.++||||
T Consensus 17 ~~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~-~~~~i~liDTPG 95 (720)
T TIGR00490 17 KFIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEG-NEYLINLIDTPG 95 (720)
T ss_pred ccccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecC-CceEEEEEeCCC
Confidence 3458999999999999999999864210 001001122333332222 333 467799999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 80 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+.++. .....++..+|++++|+|+.++....+...++.+.+. . .|.++++||+|...
T Consensus 96 ~~~f~-----------~~~~~al~~aD~~llVvda~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~ 152 (720)
T TIGR00490 96 HVDFG-----------GDVTRAMRAVDGAIVVVCAVEGVMPQTETVLRQALKE---N--VKPVLFINKVDRLI 152 (720)
T ss_pred ccccH-----------HHHHHHHHhcCEEEEEEecCCCCCccHHHHHHHHHHc---C--CCEEEEEEChhccc
Confidence 98732 2223345666999999999877777776666554332 1 46789999999875
No 241
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=99.45 E-value=4e-13 Score=102.64 Aligned_cols=118 Identities=22% Similarity=0.219 Sum_probs=68.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-ceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
...|+|+|.+|+|||||||+|.|...-..+.-..+. .+......+..++..++.+||.||........+ ++.+..
T Consensus 35 ~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~~----~Yl~~~ 110 (376)
T PF05049_consen 35 PLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPPE----EYLKEV 110 (376)
T ss_dssp -EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--HH----HHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCHH----HHHHHc
Confidence 378999999999999999999885432222222211 122233334444556899999999986543333 333332
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 150 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~ 150 (174)
. ...+|.+|+ +..+ +++..+....+.+++.. +++.+|-||+|.
T Consensus 111 ~--~~~yD~fii-i~s~-rf~~ndv~La~~i~~~g-----K~fyfVRTKvD~ 153 (376)
T PF05049_consen 111 K--FYRYDFFII-ISSE-RFTENDVQLAKEIQRMG-----KKFYFVRTKVDS 153 (376)
T ss_dssp T--GGG-SEEEE-EESS-S--HHHHHHHHHHHHTT------EEEEEE--HHH
T ss_pred c--ccccCEEEE-EeCC-CCchhhHHHHHHHHHcC-----CcEEEEEecccc
Confidence 2 456686665 5555 88888888888887763 689999999996
No 242
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.45 E-value=1.3e-12 Score=110.39 Aligned_cols=120 Identities=17% Similarity=0.204 Sum_probs=82.6
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEEe--------------
Q 030624 16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK-------------- 67 (174)
Q Consensus 16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~-------------- 67 (174)
+..+-++|+++|+.++|||||+++|+........ ....+.|.........|.
T Consensus 15 ~~~~Irni~iiGhvd~GKTTL~~~Ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~ 94 (843)
T PLN00116 15 KKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERD 94 (843)
T ss_pred CccCccEEEEEcCCCCCHHHHHHHHHHhcCCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccC
Confidence 4455689999999999999999998754321000 011233444444444442
Q ss_pred -CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEe
Q 030624 68 -DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT 146 (174)
Q Consensus 68 -~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~t 146 (174)
++..+.++||||+.+ +......++..+|++++|+|+.+++...++..++.+.... .|.++++|
T Consensus 95 ~~~~~inliDtPGh~d-----------F~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~-----~p~i~~iN 158 (843)
T PLN00116 95 GNEYLINLIDSPGHVD-----------FSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGER-----IRPVLTVN 158 (843)
T ss_pred CCceEEEEECCCCHHH-----------HHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCC-----CCEEEEEE
Confidence 145678999999986 3333334456669999999998898888887766555432 58899999
Q ss_pred CcCCC
Q 030624 147 GGDEL 151 (174)
Q Consensus 147 k~D~~ 151 (174)
|+|..
T Consensus 159 K~D~~ 163 (843)
T PLN00116 159 KMDRC 163 (843)
T ss_pred CCccc
Confidence 99998
No 243
>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]
Probab=99.44 E-value=6.3e-13 Score=87.64 Aligned_cols=117 Identities=19% Similarity=0.223 Sum_probs=84.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
...+|+|.+|+|||+|+-.+.... | .+.....+..+..+..+... ....+.+|||+|... ++.+..
T Consensus 9 fkllIigDsgVGKssLl~rF~ddt-F-s~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGqEr-----------Frtits 75 (198)
T KOG0079|consen 9 FKLLIIGDSGVGKSSLLLRFADDT-F-SGSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQER-----------FRTITS 75 (198)
T ss_pred HHHHeecCCcccHHHHHHHHhhcc-c-ccceEEEeeeeEEEEEeecCCcEEEEEEeecccHHH-----------HHHHHH
Confidence 346789999999999998887764 3 32222223333334444431 123679999999886 777777
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+++.|++++|.|.++.-+... ..|++.+++.+.. -|-++|.||.|....
T Consensus 76 tyyrgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~R 127 (198)
T KOG0079|consen 76 TYYRGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPER 127 (198)
T ss_pred HHccCCceEEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccc
Confidence 88999999999999986555444 8999999987642 478999999998764
No 244
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.44 E-value=1.7e-12 Score=89.13 Aligned_cols=108 Identities=22% Similarity=0.167 Sum_probs=69.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
+|+++|++|+|||||++.++....... ..+ +.......+.. ++ ..+.++||+|....
T Consensus 2 ki~vvG~~gvGKTsli~~~~~~~f~~~-~~~---~~~~~~~~i~~-~~~~~~l~i~D~~g~~~~---------------- 60 (158)
T cd04103 2 KLGIVGNLQSGKSALVHRYLTGSYVQL-ESP---EGGRFKKEVLV-DGQSHLLLIRDEGGAPDA---------------- 60 (158)
T ss_pred EEEEECCCCCcHHHHHHHHHhCCCCCC-CCC---CccceEEEEEE-CCEEEEEEEEECCCCCch----------------
Confidence 689999999999999998765542211 111 11111122333 33 45789999998641
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
.+...+|++++|+|.+++-+... ..+++.+..... ....|+++|.||.|+.
T Consensus 61 ~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~-~~~~piilvgnK~Dl~ 112 (158)
T cd04103 61 QFASWVDAVIFVFSLENEASFQTVYNLYHQLSSYRN-ISEIPLILVGTQDAIS 112 (158)
T ss_pred hHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEeeHHHhh
Confidence 12346799999999986655555 566666665422 1225899999999974
No 245
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.44 E-value=1.6e-12 Score=105.85 Aligned_cols=114 Identities=21% Similarity=0.265 Sum_probs=72.9
Q ss_pred cCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCce
Q 030624 27 GRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIH 106 (174)
Q Consensus 27 G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (174)
|.+|+|||||+|++++... ..+ ...+.|.........+ ++..+.++||||..+...... ...+.+.. .....+|
T Consensus 1 G~pNvGKSSL~N~Ltg~~~-~v~-n~pG~Tv~~~~~~i~~-~~~~i~lvDtPG~~~~~~~s~--~e~v~~~~-l~~~~aD 74 (591)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-TVG-NWPGVTVEKKEGKLGF-QGEDIEIVDLPGIYSLTTFSL--EEEVARDY-LLNEKPD 74 (591)
T ss_pred CCCCCCHHHHHHHHhCCCC-eec-CCCCeEEEEEEEEEEE-CCeEEEEEECCCccccCccch--HHHHHHHH-HhhcCCC
Confidence 8899999999999999763 232 3345555555555556 667899999999987443211 11122111 1235789
Q ss_pred EEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 107 AVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 107 ~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
++++|+|++ .++.. +....+.... ..|+++++||+|+.+.
T Consensus 75 vvI~VvDat-~ler~----l~l~~ql~~~--~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 75 LVVNVVDAS-NLERN----LYLTLQLLEL--GIPMILALNLVDEAEK 114 (591)
T ss_pred EEEEEecCC-cchhh----HHHHHHHHhc--CCCEEEEEehhHHHHh
Confidence 999999998 44322 2222222222 2699999999998654
No 246
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.44 E-value=9e-13 Score=97.50 Aligned_cols=96 Identities=19% Similarity=0.267 Sum_probs=68.8
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHH
Q 030624 13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK 92 (174)
Q Consensus 13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~ 92 (174)
|..+..-.-+++++|++++|||||+|.|++...-.. .....|..+.....+| ++-.+.++|+||+..+.......++
T Consensus 56 f~V~KsGda~v~lVGfPsvGKStLL~~LTnt~seva--~y~FTTl~~VPG~l~Y-~ga~IQild~Pgii~gas~g~grG~ 132 (365)
T COG1163 56 FAVKKSGDATVALVGFPSVGKSTLLNKLTNTKSEVA--DYPFTTLEPVPGMLEY-KGAQIQLLDLPGIIEGASSGRGRGR 132 (365)
T ss_pred ceEeccCCeEEEEEcCCCccHHHHHHHHhCCCcccc--ccCceecccccceEee-cCceEEEEcCcccccCcccCCCCcc
Confidence 444444447899999999999999999999763211 2233344333334445 8889999999999998777766666
Q ss_pred HHHHHHHhccCCceEEEEEEeCC
Q 030624 93 EIVKCIGMAKDGIHAVLVVFSVR 115 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~il~v~~~~ 115 (174)
++... .+.+|.+++|+|+.
T Consensus 133 ~vlsv----~R~ADlIiiVld~~ 151 (365)
T COG1163 133 QVLSV----ARNADLIIIVLDVF 151 (365)
T ss_pred eeeee----eccCCEEEEEEecC
Confidence 66654 44559999999986
No 247
>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]
Probab=99.44 E-value=4.3e-13 Score=104.06 Aligned_cols=129 Identities=18% Similarity=0.155 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
++.+++|.+++|||||+|.++...+ .......|+..-+.+...++-..|.++||||+.+.......... +..+...
T Consensus 169 rTlllcG~PNVGKSSf~~~vtradv---evqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IE-mqsITAL 244 (620)
T KOG1490|consen 169 RTLLVCGYPNVGKSSFNNKVTRADD---EVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIE-MQIITAL 244 (620)
T ss_pred CeEEEecCCCCCcHhhccccccccc---ccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHH-HHHHHHH
Confidence 8999999999999999999987653 22334444444444333336778999999999984332222211 1111111
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
+ ---.+|||++|+++.+...-.+.++.+.....--.++++++|+||+|.+++.
T Consensus 245 A-HLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~e 297 (620)
T KOG1490|consen 245 A-HLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPE 297 (620)
T ss_pred H-HhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcc
Confidence 1 1124589999998777666555555554443222446999999999998764
No 248
>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.41 E-value=5.3e-12 Score=99.05 Aligned_cols=118 Identities=15% Similarity=0.208 Sum_probs=92.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+++.|.++|+...|||||+.+|.+...... ...++|....-..+..+++..++|.||||+-. +...-
T Consensus 152 RpPVVTiMGHVDHGKTTLLD~lRks~VAA~--E~GGITQhIGAF~V~~p~G~~iTFLDTPGHaA-----------F~aMR 218 (683)
T KOG1145|consen 152 RPPVVTIMGHVDHGKTTLLDALRKSSVAAG--EAGGITQHIGAFTVTLPSGKSITFLDTPGHAA-----------FSAMR 218 (683)
T ss_pred CCCeEEEeecccCChhhHHHHHhhCceehh--hcCCccceeceEEEecCCCCEEEEecCCcHHH-----------HHHHH
Confidence 447899999999999999999999876433 34667777777777777889999999999886 33332
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
.+-+.-.|.+++|+.+++++-+++.+.++-.+... -|+++.+||+|+...+
T Consensus 219 aRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~-----VpiVvAinKiDkp~a~ 269 (683)
T KOG1145|consen 219 ARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSAN-----VPIVVAINKIDKPGAN 269 (683)
T ss_pred hccCccccEEEEEEEccCCccHhHHHHHHHHHhcC-----CCEEEEEeccCCCCCC
Confidence 33456679999999999898888877776555543 5999999999998764
No 249
>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]
Probab=99.40 E-value=1.7e-11 Score=87.38 Aligned_cols=132 Identities=21% Similarity=0.260 Sum_probs=86.9
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC-----CCCcceeeEEEEEEEeCC---cEEEEEeCCCCCCCCCCh
Q 030624 16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS-----SSGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFSAGS 87 (174)
Q Consensus 16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~-----~~~~t~~~~~~~~~~~~~---~~~~~iDtpG~~~~~~~~ 87 (174)
..|-...|.++|.+|.||||++|.|.....-..+.. ....|.+..........+ .++.++|||||.+.-...
T Consensus 42 k~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqInN~ 121 (336)
T KOG1547|consen 42 KTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQINND 121 (336)
T ss_pred hccCceEEEEEecCCCCchhhHHHHHHHHHhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecCCCcccccCcc
Confidence 445568899999999999999999887554332211 223344444333333222 368999999999865432
Q ss_pred ---HHHHHHHH----HHHHh----------ccCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624 88 ---EFVGKEIV----KCIGM----------AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 149 (174)
Q Consensus 88 ---~~~~~~~~----~~~~~----------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D 149 (174)
+-+.+-+. ++++. -..++|+++|.+.++ ..+.+.+.++++.|.+.. +++-|+.|+|
T Consensus 122 ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vv------NvvPVIakaD 195 (336)
T KOG1547|consen 122 NCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVV------NVVPVIAKAD 195 (336)
T ss_pred chhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhhhh------eeeeeEeecc
Confidence 22222222 22211 123579999999874 468888999999888875 8899999999
Q ss_pred CCCC
Q 030624 150 ELED 153 (174)
Q Consensus 150 ~~~~ 153 (174)
.+.-
T Consensus 196 tlTl 199 (336)
T KOG1547|consen 196 TLTL 199 (336)
T ss_pred cccH
Confidence 9864
No 250
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.40 E-value=3.2e-12 Score=100.98 Aligned_cols=117 Identities=19% Similarity=0.230 Sum_probs=79.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc--c---------------------------ccccCCCCcceeeEEEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRA--F---------------------------KSRASSSGVTSTCEMQRTVLKDG 69 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~--~---------------------------~~~~~~~~~t~~~~~~~~~~~~~ 69 (174)
+...++++|+.++|||||+-.|+-... . ...+...+.|.......+.+ ++
T Consensus 6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~-~~ 84 (447)
T PLN00043 6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFET-TK 84 (447)
T ss_pred ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecC-CC
Confidence 347899999999999999987763110 0 01112235666666666666 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-CC------HHHHHHHHHHHHHHhhhhcCcEE
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FS------QEEEAALHSLQTLFGKKIFDYMI 142 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~------~~~~~~l~~l~~~~~~~~~~~~~ 142 (174)
+.+.++||||+.+ +.......+..+|++++|+|+.++ +. ...++.+..+... +. ++++
T Consensus 85 ~~i~liDtPGh~d-----------f~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~-gi---~~iI 149 (447)
T PLN00043 85 YYCTVIDAPGHRD-----------FIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTL-GV---KQMI 149 (447)
T ss_pred EEEEEEECCCHHH-----------HHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHc-CC---CcEE
Confidence 7899999999876 555555566788999999999854 32 3455555444332 21 3678
Q ss_pred EEEeCcCCC
Q 030624 143 VVFTGGDEL 151 (174)
Q Consensus 143 iv~tk~D~~ 151 (174)
+++||+|+.
T Consensus 150 V~vNKmD~~ 158 (447)
T PLN00043 150 CCCNKMDAT 158 (447)
T ss_pred EEEEcccCC
Confidence 899999976
No 251
>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.40 E-value=3.9e-12 Score=83.86 Aligned_cols=119 Identities=12% Similarity=0.075 Sum_probs=82.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+++++|.+.+|||||+...++......-.++.+...... ..+...+...+.+|||.|... ++.....
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvK-Tvyr~~kRiklQiwDTagqEr-----------yrtiTTa 89 (193)
T KOG0093|consen 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVK-TVYRSDKRIKLQIWDTAGQER-----------YRTITTA 89 (193)
T ss_pred eeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEe-EeeecccEEEEEEEecccchh-----------hhHHHHH
Confidence 6899999999999999999888653322223333222222 111111234679999999986 6677777
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+++++++|+++|.++.-+... +.|...|..+.-. +.+++++.||||+-.+
T Consensus 90 yyRgamgfiLmyDitNeeSf~svqdw~tqIktysw~--naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 90 YYRGAMGFILMYDITNEESFNSVQDWITQIKTYSWD--NAQVILVGNKCDMDSE 141 (193)
T ss_pred HhhccceEEEEEecCCHHHHHHHHHHHHHheeeecc--CceEEEEecccCCccc
Confidence 8999999999999985433333 6777777776433 3799999999998654
No 252
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=6.7e-12 Score=95.67 Aligned_cols=130 Identities=20% Similarity=0.247 Sum_probs=90.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc---cc------c-----cc---------------cCCCCcceeeEEEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRR---AF------K-----SR---------------ASSSGVTSTCEMQRTVLKDG 69 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~---~~------~-----~~---------------~~~~~~t~~~~~~~~~~~~~ 69 (174)
+...++++|+..+|||||+-.|+=.. .. . .+ ....+.|.......++. +.
T Consensus 6 ph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet-~k 84 (428)
T COG5256 6 PHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFET-DK 84 (428)
T ss_pred CceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeec-CC
Confidence 45889999999999999986654211 00 0 00 11226666666666666 56
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHHhhhhcCcEE
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI 142 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~~ 142 (174)
..+.++|+||.-+ +..-.-..+.++|+.++|+++... ...++++.+- |...+|. ...+
T Consensus 85 ~~~tIiDaPGHrd-----------FvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~-La~tlGi---~~lI 149 (428)
T COG5256 85 YNFTIIDAPGHRD-----------FVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAF-LARTLGI---KQLI 149 (428)
T ss_pred ceEEEeeCCchHH-----------HHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHH-HHHhcCC---ceEE
Confidence 7899999999665 444444567788999999999766 6666777764 4444453 4899
Q ss_pred EEEeCcCCCCCChhhHHHHhcc
Q 030624 143 VVFTGGDELEDNDETLEDYLGR 164 (174)
Q Consensus 143 iv~tk~D~~~~~~~~~~~~~~~ 164 (174)
+++||+|...-++.++++...+
T Consensus 150 VavNKMD~v~wde~rf~ei~~~ 171 (428)
T COG5256 150 VAVNKMDLVSWDEERFEEIVSE 171 (428)
T ss_pred EEEEcccccccCHHHHHHHHHH
Confidence 9999999997665666665544
No 253
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=9.6e-12 Score=97.53 Aligned_cols=121 Identities=17% Similarity=0.187 Sum_probs=92.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+++.|+++|+--.|||||+..|.+...... ...+.|.....+.+... +...+.|+||||+..+ ..
T Consensus 4 R~PvVtimGHVDHGKTtLLD~IR~t~Va~~--EaGGITQhIGA~~v~~~~~~~~~itFiDTPGHeAF-----------t~ 70 (509)
T COG0532 4 RPPVVTIMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAYQVPLDVIKIPGITFIDTPGHEAF-----------TA 70 (509)
T ss_pred CCCEEEEeCcccCCccchhhhHhcCccccc--cCCceeeEeeeEEEEeccCCCceEEEEcCCcHHHH-----------HH
Confidence 457999999999999999999999876433 34667777666777664 3368999999998863 21
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhh
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDET 157 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~ 157 (174)
.-..-+.=.|.+++|+++++++.+++.+.++-++... -|+++++||+|+.+.+...
T Consensus 71 mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~-----vP~iVAiNKiDk~~~np~~ 126 (509)
T COG0532 71 MRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAG-----VPIVVAINKIDKPEANPDK 126 (509)
T ss_pred HHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCC-----CCEEEEEecccCCCCCHHH
Confidence 1122334469999999999999999988887777653 6999999999999775333
No 254
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=99.39 E-value=7e-12 Score=90.60 Aligned_cols=125 Identities=15% Similarity=0.156 Sum_probs=74.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+|+++|+.||||||..+.+.....+..- ...+.|.......+.......+.+||.||........ +.......
T Consensus 1 KiLLmG~~~SGKTSi~~vIF~~~~p~dT-~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~~~~------~~~~~~~i 73 (232)
T PF04670_consen 1 KILLMGPRRSGKTSIRSVIFHKYSPRDT-LRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFMENY------FNSQREEI 73 (232)
T ss_dssp EEEEEESTTSSHHHHHHHHHS---GGGG-GG-----SEEEEEEECTTSCEEEEEEE-SSCSTTHTT------HTCCHHHH
T ss_pred CEEEEcCCCCChhhHHHHHHcCCCchhc-cccCCcCCceEEEEecCCCcEEEEEEcCCcccccccc------ccccHHHH
Confidence 6899999999999999999988765433 2345566666555554355689999999998743220 00111123
Q ss_pred cCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+++++|||+|+. +.+...-....+.+...........+.+++.|+|+..+
T Consensus 74 f~~v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~ 126 (232)
T PF04670_consen 74 FSNVGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSE 126 (232)
T ss_dssp HCTESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-H
T ss_pred HhccCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCH
Confidence 46779999999997 34333334444444444333334688999999999764
No 255
>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.8e-12 Score=96.49 Aligned_cols=127 Identities=17% Similarity=0.285 Sum_probs=89.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEE-----------------------------------
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV----------------------------------- 65 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~----------------------------------- 65 (174)
+-|+++|+.+.||||+|+.|+....+ +-...+.+|+........
T Consensus 59 Pmill~GqyStGKTtfi~yLle~dyp-g~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~aflnRf~ 137 (532)
T KOG1954|consen 59 PMILLVGQYSTGKTTFIRYLLEQDYP-GLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLNRFM 137 (532)
T ss_pred ceEEEEeccccchhHHHHHHHhCCCC-ccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHHHHH
Confidence 56899999999999999999998865 322333334333322220
Q ss_pred ---EeC--CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhc
Q 030624 66 ---LKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIF 138 (174)
Q Consensus 66 ---~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~ 138 (174)
..+ -..+.++||||+.++..+.-.....+...+.+++.++|.|++++|+. .++..+ .+.+ ..+.|.+
T Consensus 138 csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~h-KLDIsdEf~~vi---~aLkG~E-- 211 (532)
T KOG1954|consen 138 CSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAH-KLDISDEFKRVI---DALKGHE-- 211 (532)
T ss_pred HhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechh-hccccHHHHHHH---HHhhCCc--
Confidence 000 02489999999998655544556668888899999999999999997 655544 4554 4444555
Q ss_pred CcEEEEEeCcCCCCCC
Q 030624 139 DYMIVVFTGGDELEDN 154 (174)
Q Consensus 139 ~~~~iv~tk~D~~~~~ 154 (174)
..+.||+||+|..+.+
T Consensus 212 dkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 212 DKIRVVLNKADQVDTQ 227 (532)
T ss_pred ceeEEEeccccccCHH
Confidence 4789999999999874
No 256
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.37 E-value=9.2e-12 Score=89.53 Aligned_cols=45 Identities=27% Similarity=0.326 Sum_probs=40.4
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
...+.++++++...| ..++++||+|||||||+|.++|...+..|.
T Consensus 15 ~~~vl~~i~L~v~~G--EfvsilGpSGcGKSTLLriiAGL~~p~~G~ 59 (248)
T COG1116 15 GVEVLEDINLSVEKG--EFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59 (248)
T ss_pred ceEEeccceeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 346788999999999 999999999999999999999999887763
No 257
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=99.37 E-value=3.8e-12 Score=95.58 Aligned_cols=135 Identities=15% Similarity=0.052 Sum_probs=83.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc-ceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV-TSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~-t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
..+.++++++++.| ..++++|+||||||||+++|+|...+..|...... ..... .... +.+..++.+.|.+.+.
T Consensus 18 ~~~l~~vs~~i~~G--ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~--~~~~-~~~igy~~~~~~~~~~ 92 (293)
T COG1131 18 KTALDGVSFEVEPG--EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE--PAKV-RRRIGYVPQEPSLYPE 92 (293)
T ss_pred CEEEeceeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC--HHHH-HhheEEEccCCCCCcc
Confidence 56788999999999 99999999999999999999999876555321111 00000 0011 3456788898887765
Q ss_pred CCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH
Q 030624 84 SAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE 122 (174)
Q Consensus 84 ~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~ 122 (174)
.+..+.+ +++-...+.+...++++++ +..+++++++..
T Consensus 93 lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lli-LDEPt~GLDp~~ 171 (293)
T COG1131 93 LTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLI-LDEPTSGLDPES 171 (293)
T ss_pred ccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEE-ECCCCcCCCHHH
Confidence 5532211 1111222223345565444 344455888887
Q ss_pred -HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 123 -EAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 123 -~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
.++.+.|++..... ..++++.||
T Consensus 172 ~~~~~~~l~~l~~~g--~~tvlissH 195 (293)
T COG1131 172 RREIWELLRELAKEG--GVTILLSTH 195 (293)
T ss_pred HHHHHHHHHHHHhCC--CcEEEEeCC
Confidence 45555566554322 247888888
No 258
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.37 E-value=6.7e-12 Score=87.77 Aligned_cols=137 Identities=18% Similarity=0.146 Sum_probs=81.2
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEEEeCCcEEEEEeCCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~~~~~~~~iDtpG~~~~ 83 (174)
.+.++++++.+.+ ..++++|+||+|||||++.|+|..++..|............. ...+ .....++.+.|.+...
T Consensus 14 ~~l~~i~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~-~~~i~~~~q~~~~~~~ 90 (178)
T cd03229 14 TVLNDVSLNIEAG--EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPL-RRRIGMVFQDFALFPH 90 (178)
T ss_pred EEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHH-hhcEEEEecCCccCCC
Confidence 4678889999998 999999999999999999999987765553221111000000 0011 2334566677776543
Q ss_pred CCChHHH-------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHH-HHHHHHHhhhhcCcEEEEEeCc
Q 030624 84 SAGSEFV-------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 84 ~~~~~~~-------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
.+..+.. .++....++....+++.+++ ..++..++...+..+ +.+.+..... ..++++++|-
T Consensus 91 ~t~~~~l~~~lS~G~~qr~~la~al~~~p~llil-DEP~~~LD~~~~~~l~~~l~~~~~~~--~~tiii~sH~ 160 (178)
T cd03229 91 LTVLENIALGLSGGQQQRVALARALAMDPDVLLL-DEPTSALDPITRREVRALLKSLQAQL--GITVVLVTHD 160 (178)
T ss_pred CCHHHheeecCCHHHHHHHHHHHHHHCCCCEEEE-eCCcccCCHHHHHHHHHHHHHHHHhc--CCEEEEEeCC
Confidence 3322222 34444555666777776655 334447877775444 4444443211 3678888884
No 259
>PRK12740 elongation factor G; Reviewed
Probab=99.36 E-value=1e-11 Score=102.99 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=76.1
Q ss_pred EcCCCCCHHHHHHHHhCCccc--ccc--------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHH
Q 030624 26 VGRTGNGKSATGNSILGRRAF--KSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF 89 (174)
Q Consensus 26 ~G~~g~GKStlin~l~~~~~~--~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~ 89 (174)
+|+.++|||||++.|+..... ..+ ....+.|.........+ ++..+.+|||||..+
T Consensus 1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~-~~~~i~liDtPG~~~------- 72 (668)
T PRK12740 1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEW-KGHKINLIDTPGHVD------- 72 (668)
T ss_pred CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEE-CCEEEEEEECCCcHH-------
Confidence 599999999999999543211 000 01134555555566667 778899999999875
Q ss_pred HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 90 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
+...+..++..+|++++++|+++.....+...+..+... . .|+++++||+|.....
T Consensus 73 ----~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~~~~~~~~---~--~p~iiv~NK~D~~~~~ 128 (668)
T PRK12740 73 ----FTGEVERALRVLDGAVVVVCAVGGVEPQTETVWRQAEKY---G--VPRIIFVNKMDRAGAD 128 (668)
T ss_pred ----HHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHHHHHHHHc---C--CCEEEEEECCCCCCCC
Confidence 222222344567999999999877766666665554432 2 5889999999998654
No 260
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.36 E-value=6.4e-12 Score=99.26 Aligned_cols=121 Identities=13% Similarity=0.188 Sum_probs=77.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEE---------------EEe--------------
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRT---------------VLK-------------- 67 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~---------------~~~-------------- 67 (174)
.+..+|+++|+-.+|||||+++|++.....- .+...+.|....+... .+.
T Consensus 32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (460)
T PTZ00327 32 QATINIGTIGHVAHGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGH 111 (460)
T ss_pred CCcEEEEEEccCCCCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccc
Confidence 3458999999999999999999998653211 1111222222211111 000
Q ss_pred ---CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-CCHHHHHHHHHHHHHHhhhhcCcEEE
Q 030624 68 ---DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-FSQEEEAALHSLQTLFGKKIFDYMIV 143 (174)
Q Consensus 68 ---~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~i 143 (174)
..+.+.++||||..+ +.+.+...+..+|.+++|+++.++ ....+.+.+..+.. ++. +++++
T Consensus 112 ~~~~~~~i~~IDtPGH~~-----------fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~-lgi---~~iIV 176 (460)
T PTZ00327 112 KMTLKRHVSFVDCPGHDI-----------LMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEI-MKL---KHIII 176 (460)
T ss_pred cccccceEeeeeCCCHHH-----------HHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHH-cCC---CcEEE
Confidence 024689999999754 344444445677999999999865 46666666654333 332 47899
Q ss_pred EEeCcCCCCC
Q 030624 144 VFTGGDELED 153 (174)
Q Consensus 144 v~tk~D~~~~ 153 (174)
++||+|+.+.
T Consensus 177 vlNKiDlv~~ 186 (460)
T PTZ00327 177 LQNKIDLVKE 186 (460)
T ss_pred EEecccccCH
Confidence 9999999754
No 261
>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.36 E-value=2.3e-12 Score=90.07 Aligned_cols=119 Identities=14% Similarity=0.183 Sum_probs=74.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
..++++|+++||||+|+-.|...... .. -.....+.....+ ......++|.||..+ +...+.+..+-
T Consensus 39 ~~Vll~Gl~dSGKT~LF~qL~~gs~~-~T----vtSiepn~a~~r~-gs~~~~LVD~PGH~r-------lR~kl~e~~~~ 105 (238)
T KOG0090|consen 39 NAVLLVGLSDSGKTSLFTQLITGSHR-GT----VTSIEPNEATYRL-GSENVTLVDLPGHSR-------LRRKLLEYLKH 105 (238)
T ss_pred CcEEEEecCCCCceeeeeehhcCCcc-Ce----eeeeccceeeEee-cCcceEEEeCCCcHH-------HHHHHHHHccc
Confidence 68999999999999999777755321 11 1112222222323 455679999999987 22333333321
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhh----hhcCcEEEEEeCcCCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK----KIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~iv~tk~D~~~~~ 154 (174)
. ..+-+++||+|.. -+...-+...+++.+.+-. .-..|++|+.||.|+..+.
T Consensus 106 ~-~~akaiVFVVDSa-~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 106 N-YSAKAIVFVVDSA-TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred c-ccceeEEEEEecc-ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence 1 2678999999987 5555554444444443322 2236899999999998763
No 262
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=99.36 E-value=2.8e-12 Score=90.23 Aligned_cols=139 Identities=17% Similarity=0.152 Sum_probs=87.0
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 82 (174)
|.-.+.++++++...+ ..++++||+|||||||+++|.+...++.|.................-+....+++....+++
T Consensus 13 g~~~VLkgi~l~v~~G--evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFP 90 (240)
T COG1126 13 GDKEVLKGISLSVEKG--EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFP 90 (240)
T ss_pred CCeEEecCcceeEcCC--CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccc
Confidence 5567789999999999 99999999999999999999999888776433222110000000000122334555554444
Q ss_pred CCCChHHH------------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCH
Q 030624 83 FSAGSEFV------------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ 120 (174)
Q Consensus 83 ~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~ 120 (174)
-.+..+.. .++-..++++.+-++++++|--. ++.+++
T Consensus 91 HlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEP-TSALDP 169 (240)
T COG1126 91 HLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP-TSALDP 169 (240)
T ss_pred cchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCC-cccCCH
Confidence 22211111 23444556666778887776433 337778
Q ss_pred HH-HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 121 EE-EAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 121 ~~-~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
+- .+.++.+.++..+. -+++++||
T Consensus 170 Elv~EVL~vm~~LA~eG---mTMivVTH 194 (240)
T COG1126 170 ELVGEVLDVMKDLAEEG---MTMIIVTH 194 (240)
T ss_pred HHHHHHHHHHHHHHHcC---CeEEEEec
Confidence 76 67777777775333 68999999
No 263
>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.35 E-value=9.1e-12 Score=82.67 Aligned_cols=125 Identities=18% Similarity=0.156 Sum_probs=84.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+++++|+.|+|||.|+..+.....-....-..+......+..+.- +..++.+|||.|... ++...+.
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGg-K~vKLQIWDTAGQEr-----------FRSVtRs 77 (214)
T KOG0086|consen 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGG-KTVKLQIWDTAGQER-----------FRSVTRS 77 (214)
T ss_pred heeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecC-cEEEEEEeecccHHH-----------HHHHHHH
Confidence 6789999999999999988776543211111122222222223222 445789999999987 7888888
Q ss_pred ccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHH
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE 159 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~ 159 (174)
.++++.+.++|.|.+++-+... ..|+.-++...... ..++++.||.|+-...+.+..
T Consensus 78 YYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~Vtfl 135 (214)
T KOG0086|consen 78 YYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFL 135 (214)
T ss_pred HhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHH
Confidence 9999999999999985544443 56666666654333 467788999999766444443
No 264
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=99.35 E-value=1.4e-11 Score=94.57 Aligned_cols=130 Identities=15% Similarity=0.180 Sum_probs=82.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCC---cceeeEE---EEEEEeCC----cEE
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSG---VTSTCEM---QRTVLKDG----QVV 72 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~--------------~~~~~---~t~~~~~---~~~~~~~~----~~~ 72 (174)
.+-..-|+++|+.++|||||+|+++++...+.- .+..+ .|++..+ ..++..-. .++
T Consensus 14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V 93 (492)
T TIGR02836 14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV 93 (492)
T ss_pred hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence 333478999999999999999999998211110 11223 4555555 33333223 678
Q ss_pred EEEeCCCCCCCCCChHHHHHH--------------HHHH-----HHhccCCceEEEEEE-eCC------CCCCHHHHHHH
Q 030624 73 NVIDTPGLFDFSAGSEFVGKE--------------IVKC-----IGMAKDGIHAVLVVF-SVR------SRFSQEEEAAL 126 (174)
Q Consensus 73 ~~iDtpG~~~~~~~~~~~~~~--------------~~~~-----~~~~~~~~~~il~v~-~~~------~~~~~~~~~~l 126 (174)
.++||+|+............. +-++ -+....+++..++|. |.+ +.+...+.+++
T Consensus 94 rlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~aEe~~i 173 (492)
T TIGR02836 94 RLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVEAEERVI 173 (492)
T ss_pred EEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchHHHHHHH
Confidence 999999998755433322211 0011 111223678888888 664 35566677887
Q ss_pred HHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 127 HSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 127 ~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
+.|++.. +|.++++|+.|-.
T Consensus 174 ~eLk~~~-----kPfiivlN~~dp~ 193 (492)
T TIGR02836 174 EELKELN-----KPFIILLNSTHPY 193 (492)
T ss_pred HHHHhcC-----CCEEEEEECcCCC
Confidence 7777764 7999999999943
No 265
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.35 E-value=5.2e-12 Score=105.41 Aligned_cols=120 Identities=19% Similarity=0.274 Sum_probs=78.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccc----c----------cCCCCcceeeEEEEEEE--e-CCcEEEEEeCCC
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS----R----------ASSSGVTSTCEMQRTVL--K-DGQVVNVIDTPG 79 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~----~----------~~~~~~t~~~~~~~~~~--~-~~~~~~~iDtpG 79 (174)
..+-+.|+++|+.++|||||+.+|+....... + ....+.|.........| . ++..+.++||||
T Consensus 17 ~~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG 96 (731)
T PRK07560 17 PEQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPG 96 (731)
T ss_pred hhcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCC
Confidence 34457899999999999999999874321100 0 00112333333333333 1 245689999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 80 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+.++ ......++..+|++++|+|+.++....+...++.+.+. . .|.++++||+|...
T Consensus 97 ~~df-----------~~~~~~~l~~~D~avlVvda~~g~~~~t~~~~~~~~~~---~--~~~iv~iNK~D~~~ 153 (731)
T PRK07560 97 HVDF-----------GGDVTRAMRAVDGAIVVVDAVEGVMPQTETVLRQALRE---R--VKPVLFINKVDRLI 153 (731)
T ss_pred ccCh-----------HHHHHHHHHhcCEEEEEEECCCCCCccHHHHHHHHHHc---C--CCeEEEEECchhhc
Confidence 9872 22333344566999999999878888887777654443 1 36789999999863
No 266
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.34 E-value=2.4e-11 Score=86.20 Aligned_cols=116 Identities=18% Similarity=0.048 Sum_probs=71.0
Q ss_pred eEEEEEcCCCCCHHHHHH-HHhCCcccccc-cCCCCcceee-E-EE-E--------EEE-eCCcEEEEEeCCCCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGN-SILGRRAFKSR-ASSSGVTSTC-E-MQ-R--------TVL-KDGQVVNVIDTPGLFDFSAG 86 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin-~l~~~~~~~~~-~~~~~~t~~~-~-~~-~--------~~~-~~~~~~~~iDtpG~~~~~~~ 86 (174)
.+|+++|..|+|||||+. .+.+....... .....+|... . .. . ... .....+.+|||+|....
T Consensus 3 ~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~~--- 79 (195)
T cd01873 3 IKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHDK--- 79 (195)
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChhh---
Confidence 689999999999999995 55443211010 0111122210 0 00 0 011 02346899999998641
Q ss_pred hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+ ....+.++|++++|+|.+++-+.... .|++.+.... . ..|+++|.||+|+..
T Consensus 80 -------~---~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~-~--~~piilvgNK~DL~~ 134 (195)
T cd01873 80 -------D---RRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC-P--RVPVILVGCKLDLRY 134 (195)
T ss_pred -------h---hcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhccc
Confidence 1 12357899999999999865554442 4677666543 2 258999999999864
No 267
>PTZ00258 GTP-binding protein; Provisional
Probab=99.33 E-value=1.8e-11 Score=94.46 Aligned_cols=90 Identities=19% Similarity=0.220 Sum_probs=63.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC----------------cEEEEEeCCCCCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFD 82 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~~iDtpG~~~ 82 (174)
...+|+++|.+++|||||+|+|++.... .+ ..+..|.........+.+. ..+.++||||+..
T Consensus 20 ~~~kvgIVG~PNvGKSTLfnaLt~~~~~-v~-n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ 97 (390)
T PTZ00258 20 NNLKMGIVGLPNVGKSTTFNALCKQQVP-AE-NFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVK 97 (390)
T ss_pred CCcEEEEECCCCCChHHHHHHHhcCccc-cc-CCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCc
Confidence 3478999999999999999999987642 22 2345555555555544221 2489999999997
Q ss_pred CCCChHHHHHHHHHHHHhccCCceEEEEEEeC
Q 030624 83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSV 114 (174)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~ 114 (174)
+......+...+...++ .+|++++|+|+
T Consensus 98 ga~~g~gLg~~fL~~Ir----~aD~il~VVd~ 125 (390)
T PTZ00258 98 GASEGEGLGNAFLSHIR----AVDGIYHVVRA 125 (390)
T ss_pred CCcchhHHHHHHHHHHH----HCCEEEEEEeC
Confidence 65555555555665544 45999999997
No 268
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.33 E-value=1.5e-11 Score=91.02 Aligned_cols=86 Identities=20% Similarity=0.211 Sum_probs=60.3
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCc----------------EEEEEeCCCCCCCCCC
Q 030624 23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ----------------VVNVIDTPGLFDFSAG 86 (174)
Q Consensus 23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~----------------~~~~iDtpG~~~~~~~ 86 (174)
++++|.+++|||||+|+|++.... .+ ..++.|.......+.+.+.+ .+.++|+||+.++...
T Consensus 1 igivG~PN~GKSTLfn~Lt~~~~~-~~-n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~ 78 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGAE-AA-NYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK 78 (274)
T ss_pred CeEeCCCCCcHHHHHHHHhCCCCc-cc-cccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence 589999999999999999998752 22 23445545554444442221 4899999999986655
Q ss_pred hHHHHHHHHHHHHhccCCceEEEEEEeC
Q 030624 87 SEFVGKEIVKCIGMAKDGIHAVLVVFSV 114 (174)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~ 114 (174)
...+..++...++ .+|+++.|+++
T Consensus 79 ~~glg~~fL~~i~----~~D~li~VV~~ 102 (274)
T cd01900 79 GEGLGNKFLSHIR----EVDAIAHVVRC 102 (274)
T ss_pred hhHHHHHHHHHHH----hCCEEEEEEeC
Confidence 5556666665544 55999999986
No 269
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=99.33 E-value=6.7e-12 Score=91.50 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=40.3
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
++..+.++++|+.+.| ..++++||||||||||+++|+|..++..|
T Consensus 13 ~~~~il~~ls~~i~~G--~i~~iiGpNG~GKSTLLk~l~g~l~p~~G 57 (258)
T COG1120 13 GGKPILDDLSFSIPKG--EITGILGPNGSGKSTLLKCLAGLLKPKSG 57 (258)
T ss_pred CCeeEEecceEEecCC--cEEEEECCCCCCHHHHHHHHhccCCCCCC
Confidence 4566789999999999 99999999999999999999998777666
No 270
>KOG0394 consensus Ras-related GTPase [General function prediction only]
Probab=99.33 E-value=6.8e-12 Score=85.68 Aligned_cols=121 Identities=15% Similarity=0.078 Sum_probs=74.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|.++|.+|+|||||+|.........-...+.+.-...+-..+.. +...+.+|||.|..+ +.+.-.
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~-~~vtlQiWDTAGQER-----------FqsLg~ 76 (210)
T KOG0394|consen 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDD-RSVTLQIWDTAGQER-----------FQSLGV 76 (210)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcC-eEEEEEEEecccHHH-----------hhhccc
Confidence 47899999999999999999887654322211222222222222211 234578999999997 444445
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHH-HHHHHhhh-hcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHS-LQTLFGKK-IFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~-l~~~~~~~-~~~~~~iv~tk~D~~~ 152 (174)
.+++++|+.+++.|.+..-+.+. ..|-+. |.+....+ ..-|.+|+.||.|.-.
T Consensus 77 aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 77 AFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred ceecCCceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 68999999999998864322222 222222 23322121 2348999999999865
No 271
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.32 E-value=2.7e-11 Score=99.58 Aligned_cols=120 Identities=21% Similarity=0.239 Sum_probs=90.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc--ccccc--------------CCCCcceeeEEEEEEEeC-CcEEEEEeCCCCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRA--FKSRA--------------SSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLF 81 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~--~~~~~--------------~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~ 81 (174)
.-+.|+++|+..+|||||..+|+-... ...|. ...+.|.........| + +..+.+|||||+-
T Consensus 9 ~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~-~~~~~iNlIDTPGHV 87 (697)
T COG0480 9 RIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFW-KGDYRINLIDTPGHV 87 (697)
T ss_pred cceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEE-cCceEEEEeCCCCcc
Confidence 448999999999999999988763221 11111 1237788888888888 6 4899999999999
Q ss_pred CCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh
Q 030624 82 DFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 155 (174)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~ 155 (174)
++. .+..+.++.+ |+.++|+|+.++..+.++..++...+.. .|.++++||+|....+-
T Consensus 88 DFt-------~EV~rslrvl----DgavvVvdaveGV~~QTEtv~rqa~~~~-----vp~i~fiNKmDR~~a~~ 145 (697)
T COG0480 88 DFT-------IEVERSLRVL----DGAVVVVDAVEGVEPQTETVWRQADKYG-----VPRILFVNKMDRLGADF 145 (697)
T ss_pred ccH-------HHHHHHHHhh----cceEEEEECCCCeeecHHHHHHHHhhcC-----CCeEEEEECccccccCh
Confidence 942 3444555544 9999999998899999888876666653 58999999999987643
No 272
>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]
Probab=99.32 E-value=2e-11 Score=80.06 Aligned_cols=131 Identities=15% Similarity=0.119 Sum_probs=91.8
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHH
Q 030624 13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK 92 (174)
Q Consensus 13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~ 92 (174)
+.+++.+..+++++|--++|||||++.|.+..+..- .+|...+...+.+...-.+.++|.-|.-.
T Consensus 10 ~ks~t~rEirilllGldnAGKTT~LKqL~sED~~hl-----tpT~GFn~k~v~~~g~f~LnvwDiGGqr~---------- 74 (185)
T KOG0074|consen 10 CKSRTRREIRILLLGLDNAGKTTFLKQLKSEDPRHL-----TPTNGFNTKKVEYDGTFHLNVWDIGGQRG---------- 74 (185)
T ss_pred hcCCCcceEEEEEEecCCCcchhHHHHHccCChhhc-----cccCCcceEEEeecCcEEEEEEecCCccc----------
Confidence 445667789999999999999999999999875322 23333444455553446789999999876
Q ss_pred HHHHHHHhccCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624 93 EIVKCIGMAKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 163 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~il~v~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 163 (174)
++.++..++...|.+|||+|.++. ++....+..+.+.+..-.. -|+.|.-||-|++.. ...++.-.
T Consensus 75 -IRpyWsNYyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~--vpvlIfankQdllta--a~~eeia~ 142 (185)
T KOG0074|consen 75 -IRPYWSNYYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAE--VPVLIFANKQDLLTA--AKVEEIAL 142 (185)
T ss_pred -cchhhhhhhhccceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhc--cceeehhhhhHHHhh--cchHHHHH
Confidence 888999999999999999997542 2222244444444432222 488999999999876 34444433
No 273
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.31 E-value=4.3e-11 Score=83.35 Aligned_cols=135 Identities=17% Similarity=0.103 Sum_probs=80.7
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.+.++++++.+.+ ..++++|+||+|||||++.|+|...+..|........... ..... .....++.+.|.+....+
T Consensus 14 ~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~-~~~i~~~~q~~~~~~~~t 89 (173)
T cd03230 14 TALDDISLTVEKG--EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKK-EPEEV-KRRIGYLPEEPSLYENLT 89 (173)
T ss_pred eeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccc-chHhh-hccEEEEecCCccccCCc
Confidence 4678889999998 9999999999999999999999876655532111110000 00011 233456666666654333
Q ss_pred ChHHH-----HHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624 86 GSEFV-----GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 86 ~~~~~-----~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
..+.+ .++....++..+.+++++++ ..++..++.... ...+.|.+.. .+ ..+++++||-
T Consensus 90 v~~~~~LS~G~~qrv~laral~~~p~illl-DEPt~~LD~~~~~~l~~~l~~~~-~~--g~tiii~th~ 154 (173)
T cd03230 90 VRENLKLSGGMKQRLALAQALLHDPELLIL-DEPTSGLDPESRREFWELLRELK-KE--GKTILLSSHI 154 (173)
T ss_pred HHHHhhcCHHHHHHHHHHHHHHcCCCEEEE-eCCccCCCHHHHHHHHHHHHHHH-HC--CCEEEEECCC
Confidence 22221 23344555666777776554 444447888774 4444455442 22 3678888874
No 274
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.30 E-value=4.7e-11 Score=86.77 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=38.6
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.+ ..++++||||+|||||+++++|..++..|.
T Consensus 18 ~vl~~i~l~v~~G--~~~~iiGPNGaGKSTLlK~iLGll~p~~G~ 60 (254)
T COG1121 18 PVLEDISLSVEKG--EITALIGPNGAGKSTLLKAILGLLKPSSGE 60 (254)
T ss_pred eeeeccEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCcCCcce
Confidence 4788999999999 999999999999999999999977666663
No 275
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=99.30 E-value=4e-11 Score=91.70 Aligned_cols=88 Identities=19% Similarity=0.207 Sum_probs=60.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC----------------cEEEEEeCCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG----------------QVVNVIDTPGLFDFS 84 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~----------------~~~~~iDtpG~~~~~ 84 (174)
.+++++|.+++|||||+|+|++... ..+ ..+..|.........+.+. ..+.++|+||+.++.
T Consensus 3 ~~vgIVG~PNvGKSTLfnaLt~~~~-~v~-nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a 80 (364)
T PRK09601 3 LKCGIVGLPNVGKSTLFNALTKAGA-EAA-NYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA 80 (364)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCC-eec-ccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence 6899999999999999999999773 222 2244454444433333221 248999999999865
Q ss_pred CChHHHHHHHHHHHHhccCCceEEEEEEeC
Q 030624 85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSV 114 (174)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~ 114 (174)
.....+..++...++ ++|++++|+|+
T Consensus 81 ~~g~glg~~fL~~i~----~aD~li~VVd~ 106 (364)
T PRK09601 81 SKGEGLGNQFLANIR----EVDAIVHVVRC 106 (364)
T ss_pred ChHHHHHHHHHHHHH----hCCEEEEEEeC
Confidence 544555555555544 55999999998
No 276
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.30 E-value=1.1e-11 Score=88.72 Aligned_cols=140 Identities=17% Similarity=0.130 Sum_probs=84.3
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE---EEEEeCCcEEEEEeCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ---RTVLKDGQVVNVIDTPGLFD 82 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~~~~~~iDtpG~~~ 82 (174)
.+.++++++++.| ..++|+||+|||||||+|.|.+...++.|............. ...+++....+++....+.+
T Consensus 19 ~~L~~v~l~i~~G--e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~ 96 (226)
T COG1136 19 EALKDVNLEIEAG--EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLP 96 (226)
T ss_pred EecccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCC
Confidence 4678899999999 999999999999999999999988776654222111000000 00111233455555555554
Q ss_pred CCCChHHH------------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCH
Q 030624 83 FSAGSEFV------------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ 120 (174)
Q Consensus 83 ~~~~~~~~------------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~ 120 (174)
..+..+.+ .++-..++++....+. +|+...++..++.
T Consensus 97 ~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~-iilADEPTgnLD~ 175 (226)
T COG1136 97 DLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPK-IILADEPTGNLDS 175 (226)
T ss_pred CCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCC-eEEeeCccccCCh
Confidence 43322221 1223334444455555 4445555557777
Q ss_pred HH-HHHHHHHHHHHhhhhcCcEEEEEeCcCC
Q 030624 121 EE-EAALHSLQTLFGKKIFDYMIVVFTGGDE 150 (174)
Q Consensus 121 ~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~ 150 (174)
.. ...++.+.+...+. ..++|++||-..
T Consensus 176 ~t~~~V~~ll~~~~~~~--g~tii~VTHd~~ 204 (226)
T COG1136 176 KTAKEVLELLRELNKER--GKTIIMVTHDPE 204 (226)
T ss_pred HHHHHHHHHHHHHHHhc--CCEEEEEcCCHH
Confidence 76 67777777765443 468999999544
No 277
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=99.26 E-value=7.5e-12 Score=80.36 Aligned_cols=115 Identities=19% Similarity=0.234 Sum_probs=74.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.|++++|+.|+|||||.++|.|....- ...+.++| ++. ..|||||-.= ..+.+...+..
T Consensus 2 Kri~~vG~~gcGKTtL~q~L~G~~~ly-----------kKTQAve~-~d~--~~IDTPGEy~-------~~~~~Y~aL~t 60 (148)
T COG4917 2 KRIAFVGQVGCGKTTLFQSLYGNDTLY-----------KKTQAVEF-NDK--GDIDTPGEYF-------EHPRWYHALIT 60 (148)
T ss_pred ceeEEecccccCchhHHHHhhcchhhh-----------cccceeec-cCc--cccCCchhhh-------hhhHHHHHHHH
Confidence 689999999999999999999876321 12233444 222 3689999663 23445555556
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC-ChhhHHHHhcc
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLGR 164 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~-~~~~~~~~~~~ 164 (174)
....+|+++++-.+.++.+.-..-+ ... ..+++|-|+||+|+..+ +....+.++..
T Consensus 61 t~~dadvi~~v~~and~~s~f~p~f----~~~----~~k~vIgvVTK~DLaed~dI~~~~~~L~e 117 (148)
T COG4917 61 TLQDADVIIYVHAANDPESRFPPGF----LDI----GVKKVIGVVTKADLAEDADISLVKRWLRE 117 (148)
T ss_pred HhhccceeeeeecccCccccCCccc----ccc----cccceEEEEecccccchHhHHHHHHHHHH
Confidence 6778899999988765433222222 111 12469999999999943 32344666655
No 278
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.26 E-value=9.3e-11 Score=84.25 Aligned_cols=43 Identities=28% Similarity=0.277 Sum_probs=38.2
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+.+.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 13 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G 55 (213)
T cd03259 13 VRALDDLSLTVEPG--EFLALLGPSGCGKTTLLRLIAGLERPDSG 55 (213)
T ss_pred eeeecceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 34778899999999 99999999999999999999998776665
No 279
>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.25 E-value=8.4e-11 Score=80.50 Aligned_cols=119 Identities=14% Similarity=0.082 Sum_probs=87.3
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
...++.+|+++|--+|||||++..+-..+..+ ..+|...++-.+.+ ++..+.+||.-|... ++
T Consensus 13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E~vt-----tvPTiGfnVE~v~y-kn~~f~vWDvGGq~k-----------~R 75 (181)
T KOG0070|consen 13 FGKKEMRILMVGLDAAGKTTILYKLKLGEIVT-----TVPTIGFNVETVEY-KNISFTVWDVGGQEK-----------LR 75 (181)
T ss_pred cCcceEEEEEEeccCCCceeeeEeeccCCccc-----CCCccccceeEEEE-cceEEEEEecCCCcc-----------cc
Confidence 34456899999999999999998876554432 24666677777777 789999999999987 77
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 153 (174)
..++..+...+++|||+|.+++.-..+ .-+.+...+.+. ...|+++..||.|....
T Consensus 76 ~lW~~Y~~~t~~lIfVvDS~Dr~Ri~e--ak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 76 PLWKHYFQNTQGLIFVVDSSDRERIEE--AKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred cchhhhccCCcEEEEEEeCCcHHHHHH--HHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 777888899999999999875422222 222333333332 23689999999998765
No 280
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=3.1e-11 Score=95.38 Aligned_cols=129 Identities=19% Similarity=0.221 Sum_probs=90.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc-ccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKS-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+.+++++||+|+||||||++|........ .....++|.. . .+.+++++..+|.-. ..+++.+
T Consensus 69 PfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvv----s---gK~RRiTflEcp~Dl----------~~miDva 131 (1077)
T COG5192 69 PFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVV----S---GKTRRITFLECPSDL----------HQMIDVA 131 (1077)
T ss_pred CeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEe----e---cceeEEEEEeChHHH----------HHHHhHH
Confidence 37788999999999999999987532111 1111222221 1 167889999999322 3366666
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcccCCCCccccC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGRECPKPLKVCF 174 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~~~~~~l~~~~ 174 (174)
+.+ |.+++++|+.-++..++.++++.++.- |. +.++-|+||.|+...+ .+++...+...++.|-++|
T Consensus 132 KIa----DLVlLlIdgnfGfEMETmEFLnil~~H-Gm---PrvlgV~ThlDlfk~~-stLr~~KKrlkhRfWtEiy 198 (1077)
T COG5192 132 KIA----DLVLLLIDGNFGFEMETMEFLNILISH-GM---PRVLGVVTHLDLFKNP-STLRSIKKRLKHRFWTEIY 198 (1077)
T ss_pred Hhh----heeEEEeccccCceehHHHHHHHHhhc-CC---CceEEEEeecccccCh-HHHHHHHHHHhhhHHHHHc
Confidence 655 999999999889999998888877764 33 4789999999998764 5666666665666665543
No 281
>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]
Probab=99.25 E-value=4.4e-11 Score=78.91 Aligned_cols=124 Identities=15% Similarity=0.062 Sum_probs=82.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
..+.++|-.+||||||+|.++..... . ...+|...+...+.- ....+.++|.||... ++..+..
T Consensus 21 mel~lvGLq~sGKtt~Vn~ia~g~~~-e---dmiptvGfnmrk~tk-gnvtiklwD~gGq~r-----------frsmWer 84 (186)
T KOG0075|consen 21 MELSLVGLQNSGKTTLVNVIARGQYL-E---DMIPTVGFNMRKVTK-GNVTIKLWDLGGQPR-----------FRSMWER 84 (186)
T ss_pred eeEEEEeeccCCcceEEEEEeeccch-h---hhcccccceeEEecc-CceEEEEEecCCCcc-----------HHHHHHH
Confidence 68899999999999999998864421 1 123344444444432 456789999999998 6777777
Q ss_pred ccCCceEEEEEEeCCCC--CCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624 101 AKDGIHAVLVVFSVRSR--FSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 164 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~--~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 164 (174)
+.++.++++|++|+.++ ++..-.+....+... .-...|++++.||.|+..+- .-.+.+.+
T Consensus 85 ycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~--~l~gip~LVLGnK~d~~~AL--~~~~li~r 146 (186)
T KOG0075|consen 85 YCRGVSAIVYVVDAADPDKLEASRSELHDLLDKP--SLTGIPLLVLGNKIDLPGAL--SKIALIER 146 (186)
T ss_pred HhhcCcEEEEEeecCCcccchhhHHHHHHHhcch--hhcCCcEEEecccccCcccc--cHHHHHHH
Confidence 88899999999999742 222223333333321 11236999999999997662 33444433
No 282
>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]
Probab=99.25 E-value=3.1e-11 Score=81.02 Aligned_cols=123 Identities=16% Similarity=0.062 Sum_probs=85.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
.|..++|.+-+|||+|+...+....+.- + .+|....+. -++.. ....+.+|||+|..+ ++.
T Consensus 9 frlivigdstvgkssll~~ft~gkfael--s--dptvgvdffarlie~~pg~riklqlwdtagqer-----------frs 73 (213)
T KOG0091|consen 9 FRLIVIGDSTVGKSSLLRYFTEGKFAEL--S--DPTVGVDFFARLIELRPGYRIKLQLWDTAGQER-----------FRS 73 (213)
T ss_pred EEEEEEcCCcccHHHHHHHHhcCccccc--C--CCccchHHHHHHHhcCCCcEEEEEEeeccchHH-----------HHH
Confidence 7899999999999999999987764321 1 222222211 11121 234678999999987 777
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL 158 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~ 158 (174)
+.+..++..=++++|+|.+++-+.+. ..|++..+-..+.+.+.-..+|.+|.|+......+.
T Consensus 74 itksyyrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~ 136 (213)
T KOG0091|consen 74 ITKSYYRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTA 136 (213)
T ss_pred HHHHHhhcccceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccH
Confidence 88888888899999999987766666 677777776665343334568889999875443444
No 283
>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=8.7e-11 Score=92.30 Aligned_cols=131 Identities=23% Similarity=0.319 Sum_probs=92.2
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCccc---ccc----------cCCCCcceeeEEEEEEEeCC--cEEEEEeCCCC
Q 030624 16 PSNGERTVVLVGRTGNGKSATGNSILGRRAF---KSR----------ASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGL 80 (174)
Q Consensus 16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~---~~~----------~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~ 80 (174)
|..+-+.++|+.+-..|||||...|+..... ..+ +...++|......++.|..+ ..+.+|||||+
T Consensus 56 P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGH 135 (650)
T KOG0462|consen 56 PVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGH 135 (650)
T ss_pred chhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCCc
Confidence 3355688999999999999999998765431 111 12347788777777777331 57899999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHH
Q 030624 81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED 160 (174)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 160 (174)
-++. .+..+.+..+ +++|+++|+.++...++...+....+.. -.++.|+||+|+...+.+.++.
T Consensus 136 vDFs-------~EVsRslaac----~G~lLvVDA~qGvqAQT~anf~lAfe~~-----L~iIpVlNKIDlp~adpe~V~~ 199 (650)
T KOG0462|consen 136 VDFS-------GEVSRSLAAC----DGALLVVDASQGVQAQTVANFYLAFEAG-----LAIIPVLNKIDLPSADPERVEN 199 (650)
T ss_pred cccc-------ceehehhhhc----CceEEEEEcCcCchHHHHHHHHHHHHcC-----CeEEEeeeccCCCCCCHHHHHH
Confidence 9964 2233444444 9999999999888888866554433331 4789999999998876555544
Q ss_pred Hh
Q 030624 161 YL 162 (174)
Q Consensus 161 ~~ 162 (174)
-+
T Consensus 200 q~ 201 (650)
T KOG0462|consen 200 QL 201 (650)
T ss_pred HH
Confidence 33
No 284
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=99.25 E-value=6.8e-11 Score=90.56 Aligned_cols=43 Identities=28% Similarity=0.373 Sum_probs=38.4
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+.+.| ..++++|+||+|||||++.|+|...+..|
T Consensus 54 ~~~l~~is~~i~~G--ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G 96 (340)
T PRK13536 54 KAVVNGLSFTVASG--ECFGLLGPNGAGKSTIARMILGMTSPDAG 96 (340)
T ss_pred EEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCce
Confidence 34678899999999 99999999999999999999998877665
No 285
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.24 E-value=6.3e-11 Score=81.71 Aligned_cols=127 Identities=12% Similarity=0.086 Sum_probs=73.6
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.+.++++++.+.+ ..++++|+||+|||||++.|+|..++..|.......................++.+ +..
T Consensus 14 ~vl~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---LS~--- 85 (163)
T cd03216 14 KALDGVSLSVRRG--EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ---LSV--- 85 (163)
T ss_pred EEEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe---cCH---
Confidence 4678889999999 99999999999999999999998876555221111000000000000112333333 221
Q ss_pred ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHHhhhhcCcEEEEEeCc
Q 030624 86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
-.++....++....+++++++ ..+++.++...++ ..+.+.+.. .. ..++++++|-
T Consensus 86 ----G~~qrl~laral~~~p~illl-DEP~~~LD~~~~~~l~~~l~~~~-~~--~~tiii~sh~ 141 (163)
T cd03216 86 ----GERQMVEIARALARNARLLIL-DEPTAALTPAEVERLFKVIRRLR-AQ--GVAVIFISHR 141 (163)
T ss_pred ----HHHHHHHHHHHHhcCCCEEEE-ECCCcCCCHHHHHHHHHHHHHHH-HC--CCEEEEEeCC
Confidence 123344555556677776655 4444478887744 445554442 22 3677888875
No 286
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=99.24 E-value=8.7e-11 Score=85.46 Aligned_cols=42 Identities=26% Similarity=0.275 Sum_probs=37.6
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+...+ .+++++|+||+|||||++.|+|...+..|
T Consensus 14 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 55 (232)
T cd03218 14 KVVNGVSLSVKQG--EIVGLLGPNGAGKTTTFYMIVGLVKPDSG 55 (232)
T ss_pred EeeccceeEecCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4678889999998 99999999999999999999998776665
No 287
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=99.24 E-value=7.5e-11 Score=82.12 Aligned_cols=135 Identities=15% Similarity=0.115 Sum_probs=77.8
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.+.++++++++.+ ..++++|++|+|||||++.|+|...+..|................+ .....++.+.|.+... +
T Consensus 16 ~~l~~~~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~q~~~~~~~-t 91 (173)
T cd03246 16 PVLRNVSFSIEPG--ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNEL-GDHVGYLPQDDELFSG-S 91 (173)
T ss_pred cceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHH-HhheEEECCCCccccC-c
Confidence 3678889999998 9999999999999999999999877655532111100000000000 1223444555544431 1
Q ss_pred ChHH----HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHHhhhhcCcEEEEEeCc
Q 030624 86 GSEF----VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 86 ~~~~----~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
..+. =.++....++....+++++++ ..++..++...+.. .+.+.+.. .. ..++++++|-
T Consensus 92 v~~~lLS~G~~qrv~la~al~~~p~~lll-DEPt~~LD~~~~~~l~~~l~~~~-~~--~~tii~~sh~ 155 (173)
T cd03246 92 IAENILSGGQRQRLGLARALYGNPRILVL-DEPNSHLDVEGERALNQAIAALK-AA--GATRIVIAHR 155 (173)
T ss_pred HHHHCcCHHHHHHHHHHHHHhcCCCEEEE-ECCccccCHHHHHHHHHHHHHHH-hC--CCEEEEEeCC
Confidence 1111 123344455666777885554 44454888887544 45554442 22 3578888884
No 288
>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.24 E-value=6.1e-10 Score=73.02 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=90.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
++.+++.+|-.++||||++..|.-..+ ...-+|...++..+.| ++-.+.++|.-|... ++..+
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~-----~~~ipTvGFnvetVty-kN~kfNvwdvGGqd~-----------iRplW 78 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQS-----VTTIPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLW 78 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCC-----cccccccceeEEEEEe-eeeEEeeeeccCchh-----------hhHHH
Confidence 358999999999999999988875432 2223455556666666 788999999999887 88899
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh-h-cCcEEEEEeCcCCCCCCh-hhHHHHhcccC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK-I-FDYMIVVFTGGDELEDND-ETLEDYLGREC 166 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~-~-~~~~~iv~tk~D~~~~~~-~~~~~~~~~~~ 166 (174)
+.++.+..++|||+|..++ +..+ +.-+.+....+.+ . ..+++|+.||-|+.++-. ..+.+|++...
T Consensus 79 rhYy~gtqglIFV~Dsa~~-dr~e-eAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~ 147 (180)
T KOG0071|consen 79 RHYYTGTQGLIFVVDSADR-DRIE-EARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELER 147 (180)
T ss_pred HhhccCCceEEEEEeccch-hhHH-HHHHHHHHHhCCHhhhcceEEEEecCcccccccCHHHHHHHhcccc
Confidence 9999999999999998655 2222 2223344443332 1 246788899999976532 34667766543
No 289
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=99.24 E-value=4.4e-11 Score=90.36 Aligned_cols=44 Identities=16% Similarity=0.095 Sum_probs=38.7
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+..+.++++|+++.| ..++++|+||||||||++.|+|...+..|
T Consensus 5 ~~~~l~~vs~~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G 48 (302)
T TIGR01188 5 DFKAVDGVNFKVREG--EVFGFLGPNGAGKTTTIRMLTTLLRPTSG 48 (302)
T ss_pred CeeEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 345778899999998 99999999999999999999998876665
No 290
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=99.23 E-value=2e-10 Score=82.51 Aligned_cols=43 Identities=33% Similarity=0.347 Sum_probs=38.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++.+.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 13 ~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03301 13 VTALDDLNLDIADG--EFVVLLGPSGCGKTTTLRMIAGLEEPTSG 55 (213)
T ss_pred eeeeeceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 35678899999998 99999999999999999999998766555
No 291
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.23 E-value=2.4e-11 Score=87.51 Aligned_cols=80 Identities=25% Similarity=0.257 Sum_probs=55.9
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 82 (174)
++..+.++.+++.+.+ ..++++|++||||||++++|.+...+++|................+ +....|++.--|+++
T Consensus 12 ~~~~av~~v~l~I~~g--ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~L-Rr~IGYviQqigLFP 88 (309)
T COG1125 12 GNKKAVDDVNLTIEEG--EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVEL-RRKIGYVIQQIGLFP 88 (309)
T ss_pred CCceeeeeeeEEecCC--eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHH-HHhhhhhhhhcccCC
Confidence 4567788999999999 9999999999999999999999887777643332222222222222 234567777777776
Q ss_pred CCC
Q 030624 83 FSA 85 (174)
Q Consensus 83 ~~~ 85 (174)
..+
T Consensus 89 h~T 91 (309)
T COG1125 89 HLT 91 (309)
T ss_pred Ccc
Confidence 443
No 292
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.23 E-value=1.4e-10 Score=89.71 Aligned_cols=120 Identities=22% Similarity=0.383 Sum_probs=88.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc-cccc-------------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRA-FKSR-------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~-~~~~-------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
-+.|+|+.+...|||||+..|+.+.. |... ....++|.-.+...+.| ++..+.++||||+-++..
T Consensus 5 iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~-~~~~INIvDTPGHADFGG 83 (603)
T COG1217 5 IRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNY-NGTRINIVDTPGHADFGG 83 (603)
T ss_pred cceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeec-CCeEEEEecCCCcCCccc
Confidence 37899999999999999999987642 1111 11236777777778888 889999999999998653
Q ss_pred ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChh
Q 030624 86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE 156 (174)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~ 156 (174)
+.-+.+.. +|.+++++|+.++.-++++..++...+. . -+-|+|+||.|...+...
T Consensus 84 -------EVERvl~M----VDgvlLlVDA~EGpMPQTrFVlkKAl~~---g--L~PIVVvNKiDrp~Arp~ 138 (603)
T COG1217 84 -------EVERVLSM----VDGVLLLVDASEGPMPQTRFVLKKALAL---G--LKPIVVINKIDRPDARPD 138 (603)
T ss_pred -------hhhhhhhh----cceEEEEEEcccCCCCchhhhHHHHHHc---C--CCcEEEEeCCCCCCCCHH
Confidence 23333333 3999999999888889998876544443 2 255888999999876433
No 293
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=99.23 E-value=9.2e-11 Score=88.73 Aligned_cols=43 Identities=21% Similarity=0.273 Sum_probs=38.1
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+.+.| ..++++|+||||||||++.|+|...+..|
T Consensus 20 ~~~l~~vsl~i~~G--ei~gllGpNGaGKSTLl~~l~Gl~~p~~G 62 (306)
T PRK13537 20 KLVVDGLSFHVQRG--ECFGLLGPNGAGKTTTLRMLLGLTHPDAG 62 (306)
T ss_pred eEEEecceEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 34678899999998 89999999999999999999998877665
No 294
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=99.22 E-value=2.2e-10 Score=81.62 Aligned_cols=43 Identities=16% Similarity=0.208 Sum_probs=37.8
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.+ .+++++|+||+|||||++.|+|..++..|
T Consensus 13 ~~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (201)
T cd03231 13 RALFSGLSFTLAAG--EALQVTGPNGSGKTTLLRILAGLSPPLAG 55 (201)
T ss_pred ceeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34678889999988 99999999999999999999998876655
No 295
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=99.22 E-value=7.9e-11 Score=89.08 Aligned_cols=72 Identities=21% Similarity=0.217 Sum_probs=50.6
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
+.++++++...| ..++++||||||||||+++|+|...+++|....+....+.... .+....+++..+-+++.
T Consensus 18 ~l~~i~l~i~~G--ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P---~~R~iamVFQ~yALyPh 89 (338)
T COG3839 18 VLKDVNLDIEDG--EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPP---EKRGIAMVFQNYALYPH 89 (338)
T ss_pred eeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh---hHCCEEEEeCCccccCC
Confidence 678899999999 9999999999999999999999998877754333222222111 12234456666655553
No 296
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=99.22 E-value=8.5e-11 Score=82.50 Aligned_cols=136 Identities=12% Similarity=0.094 Sum_probs=75.7
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCC---CCCCC
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTP---GLFDF 83 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp---G~~~~ 83 (174)
+.++++++.+.+ ..++++|+||+|||||++.|+|...+..|.......................++.+.| ++...
T Consensus 15 ~l~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 92 (182)
T cd03215 15 AVRDVSFEVRAG--EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLD 92 (182)
T ss_pred eecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCcccCcccCC
Confidence 457788888888 9999999999999999999999987666532111100000000000012334445443 33432
Q ss_pred CCChHHHH---------HHHHHHHHhccCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHHhhhhcCcEEEEEeCc
Q 030624 84 SAGSEFVG---------KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 84 ~~~~~~~~---------~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
.+..+.+. ++....++....+++++++ ..++..++...++ ..+.+.+.. .. ..++++++|-
T Consensus 93 ~t~~e~l~~~~~LS~G~~qrl~la~al~~~p~llll-DEP~~~LD~~~~~~l~~~l~~~~-~~--~~tiii~sh~ 163 (182)
T cd03215 93 LSVAENIALSSLLSGGNQQKVVLARWLARDPRVLIL-DEPTRGVDVGAKAEIYRLIRELA-DA--GKAVLLISSE 163 (182)
T ss_pred CcHHHHHHHHhhcCHHHHHHHHHHHHHccCCCEEEE-CCCCcCCCHHHHHHHHHHHHHHH-HC--CCEEEEEeCC
Confidence 22222221 1233444556677775554 4444478887744 444444442 22 3678888885
No 297
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.22 E-value=6e-11 Score=87.62 Aligned_cols=136 Identities=18% Similarity=0.114 Sum_probs=89.0
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEE--EeCCcEEEEEeCCCCCCCC
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLFDFS 84 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~iDtpG~~~~~ 84 (174)
..++++++.+.| .+++++|.+|+|||||++.+.+...|++|........-....... ..+.+..+++.-+.+....
T Consensus 21 al~~vsL~I~~G--eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr 98 (339)
T COG1135 21 ALDDVSLEIPKG--EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR 98 (339)
T ss_pred eeccceEEEcCC--cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc
Confidence 467889999999 999999999999999999999998887764322211111110000 0123445666766666544
Q ss_pred CChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-
Q 030624 85 AGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE- 122 (174)
Q Consensus 85 ~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~- 122 (174)
+..+.+ .++-..++++.+.+|+ ++++..+++.+++.+
T Consensus 99 TV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~-iLL~DEaTSALDP~TT 177 (339)
T COG1135 99 TVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPK-ILLCDEATSALDPETT 177 (339)
T ss_pred hHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCC-EEEecCccccCChHHH
Confidence 322211 2344455555556666 666888887899987
Q ss_pred HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 123 EAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 123 ~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
..+++.|++...+- .-+++++||
T Consensus 178 ~sIL~LL~~In~~l--glTIvlITH 200 (339)
T COG1135 178 QSILELLKDINREL--GLTIVLITH 200 (339)
T ss_pred HHHHHHHHHHHHHc--CCEEEEEec
Confidence 67777777775433 578899999
No 298
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=1e-10 Score=85.29 Aligned_cols=42 Identities=21% Similarity=0.283 Sum_probs=37.6
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.+++++++..| ..++++|+||+|||||++.|+|...+..|
T Consensus 14 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G 55 (235)
T cd03261 14 TVLKGVDLDVRRG--EILAIIGPSGSGKSTLLRLIVGLLRPDSG 55 (235)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4678889999999 99999999999999999999998876655
No 299
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=99.22 E-value=1.3e-10 Score=83.69 Aligned_cols=43 Identities=26% Similarity=0.210 Sum_probs=38.3
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+++.+ ..++++|+||+|||||++.|+|..++..|
T Consensus 17 ~~il~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 59 (218)
T cd03255 17 VQALKGVSLSIEKG--EFVAIVGPSGSGKSTLLNILGGLDRPTSG 59 (218)
T ss_pred eeEEeeeEEEEcCC--CEEEEEcCCCCCHHHHHHHHhCCcCCCce
Confidence 34788899999999 99999999999999999999999876655
No 300
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=2.2e-10 Score=82.77 Aligned_cols=42 Identities=31% Similarity=0.297 Sum_probs=37.4
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++.+.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 18 ~il~~vs~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 59 (220)
T cd03293 18 TALEDISLSVEEG--EFVALVGPSGCGKSTLLRIIAGLERPTSG 59 (220)
T ss_pred EEEeceeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4678899999999 99999999999999999999998766555
No 301
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=99.22 E-value=2.2e-10 Score=84.57 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=38.1
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|++..| .+++|+|+||+|||||++.|+|...+..|
T Consensus 25 ~~il~~isl~i~~G--e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G 67 (257)
T PRK11247 25 RTVLNQLDLHIPAG--QFVAVVGRSGCGKSTLLRLLAGLETPSAG 67 (257)
T ss_pred cceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 45678899999998 99999999999999999999998766555
No 302
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.22 E-value=7.7e-11 Score=81.92 Aligned_cols=134 Identities=20% Similarity=0.173 Sum_probs=76.4
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.+.++++++++.+ ..++++|+||+|||||++.|+|..++..|................+ .....++.+.|.+.+. +
T Consensus 16 ~~l~~i~~~i~~G--~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~-~~~i~~~~~~~~~~~~-t 91 (171)
T cd03228 16 PVLKDVSLTIKPG--EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESL-RKNIAYVPQDPFLFSG-T 91 (171)
T ss_pred ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHH-HhhEEEEcCCchhccc-h
Confidence 4788899999999 9999999999999999999999887655522111100000000000 1123344555544431 1
Q ss_pred ChHH----HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHHhhhhcCcEEEEEeCc
Q 030624 86 GSEF----VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 86 ~~~~----~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
..+. -.++....++....+++++++ ...++.++..... ..+.+.+. .. ..+++++||.
T Consensus 92 ~~e~lLS~G~~~rl~la~al~~~p~llll-DEP~~gLD~~~~~~l~~~l~~~-~~---~~tii~~sh~ 154 (171)
T cd03228 92 IRENILSGGQRQRIAIARALLRDPPILIL-DEATSALDPETEALILEALRAL-AK---GKTVIVIAHR 154 (171)
T ss_pred HHHHhhCHHHHHHHHHHHHHhcCCCEEEE-ECCCcCCCHHHHHHHHHHHHHh-cC---CCEEEEEecC
Confidence 1111 122334445556677775554 3444478877744 44444443 22 3577777875
No 303
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.22 E-value=1.8e-10 Score=82.33 Aligned_cols=44 Identities=16% Similarity=0.166 Sum_probs=38.5
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++++++.+ .+++++|+||+|||||++.|+|...+..|.
T Consensus 14 ~~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~ 57 (204)
T PRK13538 14 RILFSGLSFTLNAG--ELVQIEGPNGAGKTSLLRILAGLARPDAGE 57 (204)
T ss_pred EEEEecceEEECCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 34678899999999 999999999999999999999988766653
No 304
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=99.21 E-value=1.4e-10 Score=83.31 Aligned_cols=43 Identities=21% Similarity=0.200 Sum_probs=38.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.+ .+++++|+||+|||||++.|+|...+..|
T Consensus 15 ~~il~~is~~i~~G--~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 57 (214)
T TIGR02673 15 VAALHDVSLHIRKG--EFLFLTGPSGAGKTTLLKLLYGALTPSRG 57 (214)
T ss_pred ceeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 35788899999999 99999999999999999999998766555
No 305
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.21 E-value=2.3e-10 Score=85.10 Aligned_cols=43 Identities=23% Similarity=0.178 Sum_probs=38.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++.+.+ ..++|+|+||+|||||++.|+|..++..|
T Consensus 37 ~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G 79 (269)
T cd03294 37 TVGVNDVSLDVREG--EIFVIMGLSGSGKSTLLRCINRLIEPTSG 79 (269)
T ss_pred ceEeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 34678899999998 99999999999999999999998876555
No 306
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.20 E-value=1.6e-10 Score=83.42 Aligned_cols=43 Identities=16% Similarity=0.067 Sum_probs=37.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.+++++++..+ ..++++|+||+|||||++.|+|..++..|
T Consensus 13 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G 55 (220)
T cd03265 13 FEAVRGVSFRVRRG--EIFGLLGPNGAGKTTTIKMLTTLLKPTSG 55 (220)
T ss_pred EEeeeceeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 34678889999988 99999999999999999999998766555
No 307
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=99.20 E-value=1.1e-10 Score=83.97 Aligned_cols=42 Identities=29% Similarity=0.325 Sum_probs=37.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++++.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 17 ~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 58 (216)
T TIGR00960 17 PALDNLNFHITKG--EMVFLVGHSGAGKSTFLKLILGIEKPTRG 58 (216)
T ss_pred eEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3778899999999 99999999999999999999998766555
No 308
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=99.20 E-value=1.7e-10 Score=83.17 Aligned_cols=42 Identities=21% Similarity=0.217 Sum_probs=37.9
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++++.+ ..++++|+||+|||||++.|+|..++..|
T Consensus 19 ~il~~~sl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 60 (218)
T cd03266 19 QAVDGVSFTVKPG--EVTGLLGPNGAGKTTTLRMLAGLLEPDAG 60 (218)
T ss_pred eeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 4788999999998 99999999999999999999998876665
No 309
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=99.20 E-value=5.7e-10 Score=77.18 Aligned_cols=122 Identities=15% Similarity=0.130 Sum_probs=71.8
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.+.++++++...+ .+++++|+||+|||||++.|+|...+..|....... ....++.+.|.+.. .+
T Consensus 15 ~~l~~i~l~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~------------~~i~~~~q~~~~~~-~t 79 (166)
T cd03223 15 VLLKDLSFEIKPG--DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG------------EDLLFLPQRPYLPL-GT 79 (166)
T ss_pred eeeecCeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC------------ceEEEECCCCcccc-cc
Confidence 4678889999998 999999999999999999999987665553211110 11112222222211 00
Q ss_pred ChH-----------HHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHH-HHHHHHHhhhhcCcEEEEEeCcC
Q 030624 86 GSE-----------FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGGD 149 (174)
Q Consensus 86 ~~~-----------~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~iv~tk~D 149 (174)
..+ .-.++....++....+++.+++- .+++.++....+.+ +.+.+. ..+++++||-.
T Consensus 80 v~~nl~~~~~~~LS~G~~~rv~laral~~~p~~lllD-EPt~~LD~~~~~~l~~~l~~~------~~tiiivsh~~ 148 (166)
T cd03223 80 LREQLIYPWDDVLSGGEQQRLAFARLLLHKPKFVFLD-EATSALDEESEDRLYQLLKEL------GITVISVGHRP 148 (166)
T ss_pred HHHHhhccCCCCCCHHHHHHHHHHHHHHcCCCEEEEE-CCccccCHHHHHHHHHHHHHh------CCEEEEEeCCh
Confidence 001 11233444555566778766653 33447777765444 333332 36788888863
No 310
>PRK10908 cell division protein FtsE; Provisional
Probab=99.20 E-value=2.1e-10 Score=82.98 Aligned_cols=43 Identities=19% Similarity=0.163 Sum_probs=38.1
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.+ ..++++|+||+|||||++.|+|..++..|
T Consensus 15 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (222)
T PRK10908 15 RQALQGVTFHMRPG--EMAFLTGHSGAGKSTLLKLICGIERPSAG 57 (222)
T ss_pred CeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 35678889999988 99999999999999999999998876665
No 311
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=99.20 E-value=3.4e-10 Score=82.65 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=38.9
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
...+.++++++++.+ ..++|+|+||+|||||++.|+|...+..|.
T Consensus 33 ~~~il~~vs~~i~~G--e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~ 77 (236)
T cd03267 33 EVEALKGISFTIEKG--EIVGFIGPNGAGKTTTLKILSGLLQPTSGE 77 (236)
T ss_pred CeeeeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 345788899999998 999999999999999999999987666653
No 312
>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]
Probab=99.19 E-value=2.9e-11 Score=80.77 Aligned_cols=121 Identities=18% Similarity=0.186 Sum_probs=83.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+++++|.-=+|||||+-..+... |+.. .++...........+.. ..-.+.+|||.|..+++ ..-.
T Consensus 14 FK~VLLGEGCVGKtSLVLRy~Enk-Fn~kHlsTlQASF~~kk~n~ed-~ra~L~IWDTAGQErfH-----------ALGP 80 (218)
T KOG0088|consen 14 FKIVLLGEGCVGKTSLVLRYVENK-FNCKHLSTLQASFQNKKVNVED-CRADLHIWDTAGQERFH-----------ALGP 80 (218)
T ss_pred eEEEEEcCCccchhHHHHHHHHhh-cchhhHHHHHHHHhhccccccc-ceeeeeeeeccchHhhh-----------ccCc
Confidence 789999999999999987666543 2222 11122222222222322 33467899999998743 2234
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChh
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE 156 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~ 156 (174)
.++++.+++++|+|.+++-+..- ..|+..|+..+|.. ...+||.||.|+-+....
T Consensus 81 IYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~V 136 (218)
T KOG0088|consen 81 IYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEEERQV 136 (218)
T ss_pred eEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHHhhhh
Confidence 57889999999999986655544 78888899998887 588999999999765433
No 313
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.19 E-value=2.1e-10 Score=82.21 Aligned_cols=43 Identities=28% Similarity=0.275 Sum_probs=37.6
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++..++ ..++++|+||+|||||++.|+|..++..|
T Consensus 13 ~~~l~~v~~~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (210)
T cd03269 13 VTALDDISFSVEKG--EIFGLLGPNGAGKTTTIRMILGIILPDSG 55 (210)
T ss_pred EEEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 34678889999988 99999999999999999999998766555
No 314
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.19 E-value=7.5e-11 Score=80.82 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=39.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~ 80 (174)
..+++++|.+|+|||||+|+|.+......+. ..+.|..... +. ....++++||||+
T Consensus 102 ~~~v~~~G~~nvGKStliN~l~~~~~~~~~~-~~g~T~~~~~--~~--~~~~~~liDtPGi 157 (157)
T cd01858 102 QISVGFIGYPNVGKSSIINTLRSKKVCKVAP-IPGETKVWQY--IT--LMKRIYLIDCPGV 157 (157)
T ss_pred ceEEEEEeCCCCChHHHHHHHhcCCceeeCC-CCCeeEeEEE--EE--cCCCEEEEECcCC
Confidence 4788999999999999999999977654443 2333443322 21 3455899999996
No 315
>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]
Probab=99.19 E-value=1.8e-10 Score=91.01 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=87.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCC-CCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-SGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
+..||+++|..|+||||||-+|+....+..-... ...+....+ .+......++||+.-.+ -+.+
T Consensus 8 kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadv----tPe~vpt~ivD~ss~~~-----------~~~~ 72 (625)
T KOG1707|consen 8 KDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADV----TPENVPTSIVDTSSDSD-----------DRLC 72 (625)
T ss_pred cceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCcc----CcCcCceEEEecccccc-----------hhHH
Confidence 3479999999999999999999998765443221 122222221 12344578999985554 2333
Q ss_pred HHhccCCceEEEEEEeCCC--CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChh
Q 030624 98 IGMAKDGIHAVLVVFSVRS--RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDE 156 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~--~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~ 156 (174)
+...++++|+++++...++ .++.....|+-.+++.++...+.|+|+|.||.|.....-.
T Consensus 73 l~~EirkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~ 133 (625)
T KOG1707|consen 73 LRKEIRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENN 133 (625)
T ss_pred HHHHHhhcCEEEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCcccccc
Confidence 3344566799999987763 4556668999999999888777899999999999876433
No 316
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.19 E-value=7.1e-10 Score=86.38 Aligned_cols=89 Identities=19% Similarity=0.107 Sum_probs=58.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE--------------------e---CCcEEEEEeC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--------------------K---DGQVVNVIDT 77 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--------------------~---~~~~~~~iDt 77 (174)
.+|+++|.+++|||||+|+|++.... .+ ..+..|.......... . ....+.++||
T Consensus 2 ~kigivG~pnvGKSTlfn~Lt~~~~~-~~-~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~ 79 (396)
T PRK09602 2 ITIGLVGKPNVGKSTFFNAATLADVE-IA-NYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV 79 (396)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCccc-cc-CCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence 57999999999999999999987642 21 2233333333322110 0 1235789999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCC
Q 030624 78 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 115 (174)
Q Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 115 (174)
||+..+......+...+.+.++ .+|++++|+|+.
T Consensus 80 aGl~~ga~~g~glg~~fL~~ir----~ad~ll~Vvd~~ 113 (396)
T PRK09602 80 AGLVPGAHEGRGLGNQFLDDLR----QADALIHVVDAS 113 (396)
T ss_pred CCcCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence 9998765444445555665555 449999999985
No 317
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.19 E-value=4.3e-10 Score=80.91 Aligned_cols=43 Identities=14% Similarity=0.242 Sum_probs=38.1
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++.+.| .+++++|+||+|||||++.|+|...+..|
T Consensus 24 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G 66 (214)
T PRK13543 24 EPVFGPLDFHVDAG--EALLVQGDNGAGKTTLLRVLAGLLHVESG 66 (214)
T ss_pred ceeeecceEEECCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCe
Confidence 35678889999998 99999999999999999999998876665
No 318
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=99.19 E-value=3.7e-10 Score=80.07 Aligned_cols=134 Identities=13% Similarity=0.066 Sum_probs=78.3
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--ccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR--AFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 82 (174)
..+.++++++.+.+ ..++++|+||+|||||++.|+|.. .+..|........ .. ...+ .....++.+.|.+..
T Consensus 22 ~~~l~~~~~~i~~G--e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~-~~--~~~~-~~~i~~~~q~~~~~~ 95 (194)
T cd03213 22 KQLLKNVSGKAKPG--ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRP-LD--KRSF-RKIIGYVPQDDILHP 95 (194)
T ss_pred ccceecceEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEe-Cc--hHhh-hheEEEccCcccCCC
Confidence 35788999999998 999999999999999999999987 6555422111100 00 0011 223345556666554
Q ss_pred CCCChHHH------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHHhhhhcCcEEEEEeCc
Q 030624 83 FSAGSEFV------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 83 ~~~~~~~~------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
..+..+.. .++....++..+.+++++++ ..+++.++....+. .+.+.+. ... ..++++++|.
T Consensus 96 ~~t~~~~i~~~~~~~~LS~G~~qrv~laral~~~p~illl-DEP~~~LD~~~~~~l~~~l~~~-~~~--~~tiii~sh~ 170 (194)
T cd03213 96 TLTVRETLMFAAKLRGLSGGERKRVSIALELVSNPSLLFL-DEPTSGLDSSSALQVMSLLRRL-ADT--GRTIICSIHQ 170 (194)
T ss_pred CCcHHHHHHHHHHhccCCHHHHHHHHHHHHHHcCCCEEEE-eCCCcCCCHHHHHHHHHHHHHH-HhC--CCEEEEEecC
Confidence 32222211 12223344555667775554 44445888887544 4444443 222 4678888885
No 319
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=99.19 E-value=2.1e-10 Score=86.71 Aligned_cols=43 Identities=23% Similarity=0.329 Sum_probs=38.2
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+.+.| .+++++|+||||||||++.|+|...+..|
T Consensus 17 ~~~l~~vsl~i~~G--e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G 59 (303)
T TIGR01288 17 KVVVNDLSFTIARG--ECFGLLGPNGAGKSTIARMLLGMISPDRG 59 (303)
T ss_pred eEEEcceeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 34678999999999 99999999999999999999998766555
No 320
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=99.19 E-value=2.2e-10 Score=81.97 Aligned_cols=43 Identities=28% Similarity=0.297 Sum_probs=37.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+.+.+ ..++++|+||+|||||++.|+|..++..|
T Consensus 13 ~~~l~~~~~~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (208)
T cd03268 13 KRVLDDISLHVKKG--EIYGFLGPNGAGKTTTMKIILGLIKPDSG 55 (208)
T ss_pred eEeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 34678889999998 99999999999999999999998776665
No 321
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=99.19 E-value=3.9e-10 Score=76.20 Aligned_cols=112 Identities=19% Similarity=0.168 Sum_probs=68.4
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.+.++++++.+.+ ..++++|+||+|||||++.|+|..++..|...... . ....++.+ +..
T Consensus 14 ~~l~~~~~~~~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~----~--------~~i~~~~~---lS~--- 73 (144)
T cd03221 14 LLLKDISLTINPG--DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGS----T--------VKIGYFEQ---LSG--- 73 (144)
T ss_pred eEEEeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECC----e--------EEEEEEcc---CCH---
Confidence 4678889999998 99999999999999999999998765544211110 0 01112222 221
Q ss_pred ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHH-HHHHHHHhhhhcCcEEEEEeCc
Q 030624 86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
. .++....++....+++.+++- .+...++......+ +.+++. ..++++++|.
T Consensus 74 --G--~~~rv~laral~~~p~illlD-EP~~~LD~~~~~~l~~~l~~~------~~til~~th~ 126 (144)
T cd03221 74 --G--EKMRLALAKLLLENPNLLLLD-EPTNHLDLESIEALEEALKEY------PGTVILVSHD 126 (144)
T ss_pred --H--HHHHHHHHHHHhcCCCEEEEe-CCccCCCHHHHHHHHHHHHHc------CCEEEEEECC
Confidence 1 233444455566777766653 33347777765444 333332 3578888875
No 322
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=99.18 E-value=1.8e-10 Score=83.21 Aligned_cols=43 Identities=26% Similarity=0.277 Sum_probs=38.3
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++.+.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 15 ~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (220)
T cd03263 15 KPAVDDLSLNVYKG--EIFGLLGHNGAGKTTTLKMLTGELRPTSG 57 (220)
T ss_pred ceeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34788999999999 99999999999999999999998876655
No 323
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.4e-10 Score=92.09 Aligned_cols=136 Identities=22% Similarity=0.189 Sum_probs=80.8
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
-...+.+++.+.+ .+++++|++|+|||||++.|+|..++..|........-.+.....| +++...+-+-|-+..+..
T Consensus 335 ~~l~~l~~t~~~g--~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~-~k~i~~v~Q~p~lf~gTi 411 (559)
T COG4988 335 PALSDLNLTIKAG--QLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAW-RKQISWVSQNPYLFAGTI 411 (559)
T ss_pred cccCCceeEecCC--cEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHH-HhHeeeeCCCCccccccH
Confidence 3567889999999 9999999999999999999999988766654333222222222222 222333344444332111
Q ss_pred -----------ChHHH---------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHH
Q 030624 86 -----------GSEFV---------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 121 (174)
Q Consensus 86 -----------~~~~~---------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~ 121 (174)
+.+.+ ..+-...++....+++++++- .++.+++.+
T Consensus 412 reNi~l~~~~~s~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llD-EpTA~LD~e 490 (559)
T COG4988 412 RENILLARPDASDEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLD-EPTAHLDAE 490 (559)
T ss_pred HHHhhccCCcCCHHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEec-CCccCCCHh
Confidence 00100 122334445556666655543 445589888
Q ss_pred HHH-HHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624 122 EEA-ALHSLQTLFGKKIFDYMIVVFTGGD 149 (174)
Q Consensus 122 ~~~-~l~~l~~~~~~~~~~~~~iv~tk~D 149 (174)
+++ +++.|.+.. + ..+++++||-.
T Consensus 491 tE~~i~~~l~~l~-~---~ktvl~itHrl 515 (559)
T COG4988 491 TEQIILQALQELA-K---QKTVLVITHRL 515 (559)
T ss_pred HHHHHHHHHHHHH-h---CCeEEEEEcCh
Confidence 854 445555543 2 36888999944
No 324
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.18 E-value=9.2e-11 Score=91.29 Aligned_cols=134 Identities=15% Similarity=0.123 Sum_probs=80.5
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC------CcEEEEEeCCCCC
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD------GQVVNVIDTPGLF 81 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~------~~~~~~iDtpG~~ 81 (174)
.++++++...+ ...+++|.||+|||||++.|.|...|++|.............+.+-.+ .+.|.++|+--..
T Consensus 20 nd~V~l~v~~G--eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ 97 (501)
T COG3845 20 NDDVSLSVKKG--EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVA 97 (501)
T ss_pred cCceeeeecCC--cEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccccccchh
Confidence 67788888888 999999999999999999999999888774322111000000000000 1234444443222
Q ss_pred CCCC-----------ChHHH---------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-
Q 030624 82 DFSA-----------GSEFV---------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE- 122 (174)
Q Consensus 82 ~~~~-----------~~~~~---------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~- 122 (174)
++-. ..... .++..++++..+++++.+|+--+ +.-+++.+
T Consensus 98 ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEP-TaVLTP~E~ 176 (501)
T COG3845 98 ENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEP-TAVLTPQEA 176 (501)
T ss_pred hhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCC-cccCCHHHH
Confidence 1100 00000 46667788888899997776444 44788887
Q ss_pred HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 123 EAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 123 ~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
.+.++.++++. .. ...+|++||
T Consensus 177 ~~lf~~l~~l~-~~--G~tIi~ITH 198 (501)
T COG3845 177 DELFEILRRLA-AE--GKTIIFITH 198 (501)
T ss_pred HHHHHHHHHHH-HC--CCEEEEEec
Confidence 56677777654 33 356777777
No 325
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=99.18 E-value=3.7e-10 Score=80.29 Aligned_cols=43 Identities=16% Similarity=0.169 Sum_probs=37.8
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++...+ ..++++|+||+|||||++.|+|...+..|
T Consensus 13 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (198)
T TIGR01189 13 RMLFEGLSFTLNAG--EALQVTGPNGIGKTTLLRILAGLLRPDSG 55 (198)
T ss_pred EEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 34678889999998 99999999999999999999998766555
No 326
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=99.18 E-value=1.8e-10 Score=83.24 Aligned_cols=42 Identities=33% Similarity=0.412 Sum_probs=37.4
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+...+ ..++++|+||+|||||++.|+|...+..|
T Consensus 14 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 55 (222)
T cd03224 14 QILFGVSLTVPEG--EIVALLGRNGAGKTTLLKTIMGLLPPRSG 55 (222)
T ss_pred eEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4678889999998 99999999999999999999998876555
No 327
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=99.18 E-value=6.4e-10 Score=82.11 Aligned_cols=43 Identities=28% Similarity=0.360 Sum_probs=38.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.| .+++|+|+||+|||||++.|+|...+..|
T Consensus 14 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (255)
T PRK11248 14 KPALEDINLTLESG--ELLVVLGPSGCGKTTLLNLIAGFVPYQHG 56 (255)
T ss_pred eeeEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34678899999999 99999999999999999999998776555
No 328
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.17 E-value=1.5e-10 Score=92.82 Aligned_cols=48 Identities=27% Similarity=0.339 Sum_probs=41.8
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS 52 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~ 52 (174)
|...+.++.++++..+ .|+++||+||+|||||++.|+|...+..|...
T Consensus 14 g~~~l~~~~~l~~~~G--~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~ 61 (530)
T COG0488 14 GDRPLLENVSLTLNPG--ERIGLVGRNGAGKSTLLKILAGELEPDSGEVT 61 (530)
T ss_pred CCceeecCCcceeCCC--CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEe
Confidence 5566788999999999 99999999999999999999999877666433
No 329
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=99.17 E-value=1.7e-10 Score=83.84 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=37.7
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+++.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 14 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (230)
T TIGR03410 14 HILRGVSLEVPKG--EVTCVLGRNGVGKTTLLKTLMGLLPVKSG 55 (230)
T ss_pred EEecceeeEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4678899999998 99999999999999999999999876665
No 330
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.17 E-value=1.2e-10 Score=83.45 Aligned_cols=136 Identities=13% Similarity=0.123 Sum_probs=85.9
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 82 (174)
|...+.++++|+.+++ ...+++|+|||||||++++|++...+..|...-. -....... .++..++..--|+++
T Consensus 13 g~k~av~~isf~v~~G--~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~----g~~~~~~~-~~rIGyLPEERGLy~ 85 (300)
T COG4152 13 GDKKAVDNISFEVPPG--EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWN----GGPLSQEI-KNRIGYLPEERGLYP 85 (300)
T ss_pred CceeeecceeeeecCC--eEEEeecCCCCCccchHHHHhccCCccCceEEEc----Ccchhhhh-hhhcccChhhhccCc
Confidence 3445678999999999 9999999999999999999999887655532111 11111111 356677888888876
Q ss_pred CCCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHH
Q 030624 83 FSAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 121 (174)
Q Consensus 83 ~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~ 121 (174)
..+..+.+ +++-...+....-+++.+|+--+-+ ++++.
T Consensus 86 k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFS-GLDPV 164 (300)
T COG4152 86 KMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFS-GLDPV 164 (300)
T ss_pred cCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCcc-CCChh
Confidence 54433322 2223333344456788777754445 66666
Q ss_pred HHHHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624 122 EEAALHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 122 ~~~~l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
..+.++...-..... ..+++..||.
T Consensus 165 N~elLk~~I~~lk~~--GatIifSsH~ 189 (300)
T COG4152 165 NVELLKDAIFELKEE--GATIIFSSHR 189 (300)
T ss_pred hHHHHHHHHHHHHhc--CCEEEEecch
Confidence 655554443333333 4788888883
No 331
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.17 E-value=2e-10 Score=82.36 Aligned_cols=43 Identities=30% Similarity=0.281 Sum_probs=38.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+.+.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 14 ~~il~~vs~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (211)
T cd03225 14 RPALDDISLTIKKG--EFVLIVGPNGSGKSTLLRLLNGLLGPTSG 56 (211)
T ss_pred eeeecceEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 34788999999998 99999999999999999999998766555
No 332
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=99.17 E-value=3.1e-10 Score=80.84 Aligned_cols=137 Identities=12% Similarity=0.085 Sum_probs=74.1
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc--ccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR--AFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
.+.++++++...+ ..++++|+||+|||||++.|+|.. .+..|.......................++.+.|.+...
T Consensus 14 ~~l~~is~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 91 (200)
T cd03217 14 EILKGVNLTIKKG--EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPPEIPG 91 (200)
T ss_pred EeeeccceEECCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChhhccC
Confidence 4678889999988 999999999999999999999983 343442111100000000000001123345555544432
Q ss_pred CCChHH----------HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624 84 SAGSEF----------VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 84 ~~~~~~----------~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
....+. -.++....++....+++.+++ ..++..++.... ...+.|.+.. .. ..+++++||.
T Consensus 92 ~~~~~~l~~~~~~LS~G~~qrv~laral~~~p~illl-DEPt~~LD~~~~~~l~~~L~~~~-~~--~~tiii~sh~ 163 (200)
T cd03217 92 VKNADFLRYVNEGFSGGEKKRNEILQLLLLEPDLAIL-DEPDSGLDIDALRLVAEVINKLR-EE--GKSVLIITHY 163 (200)
T ss_pred ccHHHHHhhccccCCHHHHHHHHHHHHHhcCCCEEEE-eCCCccCCHHHHHHHHHHHHHHH-HC--CCEEEEEecC
Confidence 111111 122333444556667775554 445558888774 4445555542 22 3577777773
No 333
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=99.16 E-value=3e-10 Score=81.57 Aligned_cols=42 Identities=26% Similarity=0.264 Sum_probs=37.3
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+.+.+ ..++++|+||+|||||++.|+|..++..|
T Consensus 14 ~~l~~~s~~i~~G--~~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (213)
T cd03262 14 HVLKGIDLTVKKG--EVVVIIGPSGSGKSTLLRCINLLEEPDSG 55 (213)
T ss_pred EeecCceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4677889999988 99999999999999999999998766555
No 334
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.16 E-value=6.4e-10 Score=81.32 Aligned_cols=43 Identities=33% Similarity=0.345 Sum_probs=38.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 15 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 57 (239)
T cd03296 15 FVALDDVSLDIPSG--ELVALLGPSGSGKTTLLRLIAGLERPDSG 57 (239)
T ss_pred EEeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 34678889999999 99999999999999999999998776555
No 335
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.16 E-value=7.1e-10 Score=77.33 Aligned_cols=116 Identities=12% Similarity=0.012 Sum_probs=67.2
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 86 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~ 86 (174)
+..+ .++.+.+ .+++++|+||+|||||++.|+|...+..|...... .. ..++.+.+.+..
T Consensus 15 ~l~~-~~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g------~~-------i~~~~q~~~LSg---- 74 (177)
T cd03222 15 LLVE-LGVVKEG--EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDG------IT-------PVYKPQYIDLSG---- 74 (177)
T ss_pred EEcc-CcEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECC------EE-------EEEEcccCCCCH----
Confidence 3444 3666777 89999999999999999999998766555321110 00 112222222211
Q ss_pred hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624 87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
-.++....++....+++++++ ...+..++.... ...+.+.+.. .+ ...++++++|.
T Consensus 75 ---Gq~qrv~laral~~~p~lllL-DEPts~LD~~~~~~l~~~l~~~~-~~-~~~tiiivsH~ 131 (177)
T cd03222 75 ---GELQRVAIAAALLRNATFYLF-DEPSAYLDIEQRLNAARAIRRLS-EE-GKKTALVVEHD 131 (177)
T ss_pred ---HHHHHHHHHHHHhcCCCEEEE-ECCcccCCHHHHHHHHHHHHHHH-Hc-CCCEEEEEECC
Confidence 124445555666677776655 334447777764 4444444442 21 12577888884
No 336
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=99.16 E-value=3.7e-10 Score=87.46 Aligned_cols=44 Identities=32% Similarity=0.358 Sum_probs=38.2
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++++++.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 16 ~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~ 59 (369)
T PRK11000 16 VVISKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59 (369)
T ss_pred eEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 34677889999988 899999999999999999999998766653
No 337
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=99.16 E-value=3.6e-10 Score=87.09 Aligned_cols=44 Identities=25% Similarity=0.339 Sum_probs=38.2
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++++.+.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 17 ~~~l~~vsl~i~~G--e~~~llG~sGsGKSTLLr~iaGl~~p~~G~ 60 (356)
T PRK11650 17 TQVIKGIDLDVADG--EFIVLVGPSGCGKSTLLRMVAGLERITSGE 60 (356)
T ss_pred CEEEeeeeEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence 34677889999988 899999999999999999999998776653
No 338
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=99.16 E-value=2.4e-10 Score=88.08 Aligned_cols=45 Identities=22% Similarity=0.229 Sum_probs=39.5
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
...+.++++|+++.| ..++|+|+||||||||+++|+|...+..|.
T Consensus 5 ~~~~l~~vs~~i~~G--ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~ 49 (363)
T TIGR01186 5 GKKGVNDADLAIAKG--EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQ 49 (363)
T ss_pred CceeEEeeEEEEcCC--CEEEEECCCCChHHHHHHHHhCCCCCCceE
Confidence 344678999999999 999999999999999999999998776663
No 339
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.16 E-value=5.5e-10 Score=84.60 Aligned_cols=87 Identities=20% Similarity=0.161 Sum_probs=55.9
Q ss_pred EEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-----------------------eCCcEEEEEeCCC
Q 030624 23 VVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-----------------------KDGQVVNVIDTPG 79 (174)
Q Consensus 23 i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----------------------~~~~~~~~iDtpG 79 (174)
|+++|.+++|||||+|+|++... ..+ ..+..|.........+ .....+.++||||
T Consensus 1 i~ivG~pnvGKStLfn~lt~~~~-~~~-~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG 78 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIA-NYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG 78 (318)
T ss_pred CEEECCCCCCHHHHHHHHhCCCC-ccc-CCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence 58999999999999999998763 121 1122333333221111 0124689999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCC
Q 030624 80 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 115 (174)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 115 (174)
+.++......+...+...++ ++|++++|+|+.
T Consensus 79 lv~ga~~~~glg~~fL~~ir----~aD~ii~Vvd~~ 110 (318)
T cd01899 79 LVPGAHEGKGLGNKFLDDLR----DADALIHVVDAS 110 (318)
T ss_pred CCCCccchhhHHHHHHHHHH----HCCEEEEEEeCC
Confidence 97654444444455555544 559999999986
No 340
>KOG0395 consensus Ras-related GTPase [General function prediction only]
Probab=99.15 E-value=5.4e-10 Score=79.19 Aligned_cols=126 Identities=23% Similarity=0.195 Sum_probs=77.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+++++|..|+|||+|...+.+......- .+...........+.. ....+.++||+|..++. ....
T Consensus 3 ~~kvvvlG~~gVGKSal~~qf~~~~f~~~y-~ptied~y~k~~~v~~-~~~~l~ilDt~g~~~~~-----------~~~~ 69 (196)
T KOG0395|consen 3 EYKVVVLGAGGVGKSALTIQFLTGRFVEDY-DPTIEDSYRKELTVDG-EVCMLEILDTAGQEEFS-----------AMRD 69 (196)
T ss_pred ceEEEEECCCCCCcchheeeeccccccccc-CCCccccceEEEEECC-EEEEEEEEcCCCcccCh-----------HHHH
Confidence 478999999999999998887776643221 1111122222222211 23456799999955522 2222
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHH
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE 159 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~ 159 (174)
.+....|++++|++.+++-+.+. ..+.+.|.+..+.. .-|+++|.||+|+.+......+
T Consensus 70 ~~~~~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~-~~PivlVGNK~Dl~~~R~V~~e 129 (196)
T KOG0395|consen 70 LYIRNGDGFLLVYSITDRSSFEEAKQLREQILRVKGRD-DVPIILVGNKCDLERERQVSEE 129 (196)
T ss_pred HhhccCcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcC-CCCEEEEEEcccchhccccCHH
Confidence 34566799999999987666655 44555553332222 2599999999999864323333
No 341
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=5.2e-10 Score=86.08 Aligned_cols=123 Identities=21% Similarity=0.303 Sum_probs=94.7
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.|+-.|+--.|||||++++++..-- .......+.|.+..++.... .+....++|.||+.+ +...+..
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~-~d~~~~fIDvpgh~~-----------~i~~mia 69 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKL-EDGVMGFIDVPGHPD-----------FISNLLA 69 (447)
T ss_pred eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccC-CCCceEEeeCCCcHH-----------HHHHHHh
Confidence 5788899999999999999986521 12234457788888777766 456899999999997 5555556
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 162 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~ 162 (174)
.+..+|..++|+++++++...+.+.+..+.-+ +. ++.++|+||+|..+. .++++.+
T Consensus 70 g~~~~d~alLvV~~deGl~~qtgEhL~iLdll-gi---~~giivltk~D~~d~--~r~e~~i 125 (447)
T COG3276 70 GLGGIDYALLVVAADEGLMAQTGEHLLILDLL-GI---KNGIIVLTKADRVDE--ARIEQKI 125 (447)
T ss_pred hhcCCceEEEEEeCccCcchhhHHHHHHHHhc-CC---CceEEEEeccccccH--HHHHHHH
Confidence 67788999999999889999999998766654 44 378999999999876 3444433
No 342
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=99.15 E-value=3.6e-10 Score=86.88 Aligned_cols=44 Identities=23% Similarity=0.307 Sum_probs=38.6
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++++.+.+ ..++++|+||+|||||++.|+|...+..|.
T Consensus 19 ~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~ 62 (351)
T PRK11432 19 NTVIDNLNLTIKQG--TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQ 62 (351)
T ss_pred eEEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHHCCCCCCceE
Confidence 34577889999988 999999999999999999999998876663
No 343
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.15 E-value=3.3e-10 Score=80.69 Aligned_cols=43 Identities=19% Similarity=0.213 Sum_probs=38.4
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.+++++++..+ .+++++|+||+|||||++.|+|...+..|
T Consensus 14 ~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 56 (200)
T PRK13540 14 QPLLQQISFHLPAG--GLLHLKGSNGAGKTTLLKLIAGLLNPEKG 56 (200)
T ss_pred eeEEeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 45788899999998 99999999999999999999998876665
No 344
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=99.15 E-value=3.3e-10 Score=81.80 Aligned_cols=42 Identities=24% Similarity=0.239 Sum_probs=37.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++...+ .+++++|+||+|||||++.|+|...+..|
T Consensus 19 ~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~i~G~~~~~~G 60 (221)
T TIGR02211 19 RVLKGVSLSIGKG--EIVAIVGSSGSGKSTLLHLLGGLDNPTSG 60 (221)
T ss_pred EeEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3778889999998 99999999999999999999998776555
No 345
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=99.15 E-value=2.2e-10 Score=81.86 Aligned_cols=43 Identities=33% Similarity=0.367 Sum_probs=37.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+.+.| .+++++|+||+|||||++.|+|...+..|
T Consensus 11 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (206)
T TIGR03608 11 KIILDDLNLTIEKG--KMYAIIGESGSGKSTLLNIIGLLEKFDSG 53 (206)
T ss_pred EEEEeceEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 34678899999998 99999999999999999999998766555
No 346
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=99.14 E-value=6e-10 Score=79.60 Aligned_cols=43 Identities=26% Similarity=0.346 Sum_probs=38.2
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+++.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 13 ~~~l~~v~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 55 (205)
T cd03226 13 TEILDDLSLDLYAG--EIIALTGKNGAGKTTLAKILAGLIKESSG 55 (205)
T ss_pred CceeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 35778899999998 99999999999999999999998776665
No 347
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=99.14 E-value=3.4e-11 Score=82.09 Aligned_cols=62 Identities=34% Similarity=0.390 Sum_probs=37.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCC----C-CcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASS----S-GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~----~-~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.+++++|++|+|||||+|+|.+......+... . ..|+. ...-+.+ +...++|||||+.+...
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt-~~~l~~l--~~g~~iIDTPGf~~~~l 102 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTT-HRELFPL--PDGGYIIDTPGFRSFGL 102 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS----S---------------SEEEEEE--TTSEEEECSHHHHT--G
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCC-CeeEEec--CCCcEEEECCCCCcccc
Confidence 68999999999999999999997544333211 1 12221 2222222 45678999999988543
No 348
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=99.14 E-value=2.4e-10 Score=83.61 Aligned_cols=42 Identities=29% Similarity=0.328 Sum_probs=37.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++.+.| .+++++|+||+|||||++.|+|...+..|
T Consensus 17 ~~l~~~sl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 58 (241)
T PRK10895 17 RVVEDVSLTVNSG--EIVGLLGPNGAGKTTTFYMVVGIVPRDAG 58 (241)
T ss_pred EEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4678889999998 99999999999999999999998776655
No 349
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=4e-10 Score=82.07 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=37.9
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++++.+ ..++++|+||+|||||++.|+|..++..|
T Consensus 19 ~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 60 (233)
T cd03258 19 TALKDVSLSVPKG--EIFGIIGRSGAGKSTLIRCINGLERPTSG 60 (233)
T ss_pred eeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4788899999998 99999999999999999999999876655
No 350
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=4.8e-10 Score=82.10 Aligned_cols=43 Identities=23% Similarity=0.249 Sum_probs=37.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 14 ~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (242)
T cd03295 14 KKAVNNLNLEIAKG--EFLVLIGPSGSGKTTTMKMINRLIEPTSG 56 (242)
T ss_pred ceEeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 34678899999999 99999999999999999999998776555
No 351
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.14 E-value=6.2e-10 Score=79.67 Aligned_cols=43 Identities=21% Similarity=0.250 Sum_probs=37.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++.+.+ .+++++|+||+|||||++.|+|...+..|
T Consensus 15 ~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (207)
T PRK13539 15 RVLFSGLSFTLAAG--EALVLTGPNGSGKTTLLRLIAGLLPPAAG 57 (207)
T ss_pred eEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34678889999998 99999999999999999999998766555
No 352
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.14 E-value=7.7e-10 Score=79.38 Aligned_cols=38 Identities=32% Similarity=0.412 Sum_probs=33.9
Q ss_pred ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+++++...+ .+++++|+||+|||||++.|+|..++..|
T Consensus 16 ~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~gl~~~~~G 53 (211)
T cd03298 16 HFDLTFAQG--EITAIVGPSGSGKSTLLNLIAGFETPQSG 53 (211)
T ss_pred ceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 777888888 99999999999999999999999876655
No 353
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.14 E-value=2.2e-10 Score=81.44 Aligned_cols=46 Identities=26% Similarity=0.310 Sum_probs=40.2
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
|+.-+..+++++.+.+ .+++++|+||+|||||+++|+|..++..|.
T Consensus 14 G~~~~L~gvsl~v~~G--eiv~llG~NGaGKTTlLkti~Gl~~~~~G~ 59 (237)
T COG0410 14 GKIQALRGVSLEVERG--EIVALLGRNGAGKTTLLKTIMGLVRPRSGR 59 (237)
T ss_pred cceeEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCee
Confidence 4566788899999999 999999999999999999999998765553
No 354
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=99.14 E-value=2.5e-10 Score=86.20 Aligned_cols=44 Identities=27% Similarity=0.281 Sum_probs=38.8
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
...+.++++|+++.| ..++++|+||+|||||++.|+|...+..|
T Consensus 14 ~~~~l~~is~~i~~G--ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G 57 (301)
T TIGR03522 14 TQNALDEVSFEAQKG--RIVGFLGPNGAGKSTTMKIITGYLPPDSG 57 (301)
T ss_pred CEEEEEEeEEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 345678899999999 99999999999999999999998877665
No 355
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.14 E-value=2.9e-10 Score=81.35 Aligned_cols=47 Identities=28% Similarity=0.369 Sum_probs=42.5
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 51 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~ 51 (174)
|...|.++++++.+.| ...+++|++|+|||||++.|.|...+..|..
T Consensus 19 G~~~Ild~v~l~V~~G--ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI 65 (263)
T COG1127 19 GDRVILDGVDLDVPRG--EILAILGGSGSGKSTLLRLILGLLRPDKGEI 65 (263)
T ss_pred CCEEEecCceeeecCC--cEEEEECCCCcCHHHHHHHHhccCCCCCCeE
Confidence 5667889999999999 9999999999999999999999998877743
No 356
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=99.13 E-value=4.5e-10 Score=81.84 Aligned_cols=42 Identities=19% Similarity=0.235 Sum_probs=37.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+++.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 23 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 64 (233)
T PRK11629 23 DVLHNVSFSIGEG--EMMAIVGSSGSGKSTLLHLLGGLDTPTSG 64 (233)
T ss_pred eeEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3688899999998 99999999999999999999998766555
No 357
>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]
Probab=99.13 E-value=1.2e-10 Score=81.47 Aligned_cols=116 Identities=20% Similarity=0.103 Sum_probs=80.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee-eEEEEEEE--eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
..+++++|..++|||+|+-+.+....+.... +|.. .-...+.. .+...+.+|||.|..+. -+
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yv----PTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-----------Dr 68 (198)
T KOG0393|consen 4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYV----PTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-----------DR 68 (198)
T ss_pred eeEEEEECCCCcCceEEEEEeccCcCccccc----CeEEccceEEEEecCCCEEEEeeeecCCCccc-----------cc
Confidence 3789999999999999998887765432221 2211 11222222 13345799999999872 22
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHH--HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQE--EEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~--~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+++++|+++++++..++.+.+ ...|+..++..++. -|+++|.+|.|+.++
T Consensus 69 lRplsY~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~d 124 (198)
T KOG0393|consen 69 LRPLSYPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRDD 124 (198)
T ss_pred ccccCCCCCCEEEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhhC
Confidence 1234789999999999987554444 47888877777632 599999999999854
No 358
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=99.13 E-value=3.4e-10 Score=81.37 Aligned_cols=42 Identities=29% Similarity=0.272 Sum_probs=37.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.+++++++..+ ..++++|+||+|||||++.|+|...+..|
T Consensus 15 ~~l~~~sl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 56 (214)
T cd03292 15 AALDGINISISAG--EFVFLVGPSGAGKSTLLKLIYKEELPTSG 56 (214)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 4778899999998 99999999999999999999998766555
No 359
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=99.13 E-value=4.1e-10 Score=86.68 Aligned_cols=44 Identities=23% Similarity=0.231 Sum_probs=38.2
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++++.+.+ ..++++|+||+|||||++.|+|...+..|.
T Consensus 17 ~~~l~~vs~~i~~G--e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~ 60 (353)
T TIGR03265 17 FTALKDISLSVKKG--EFVCLLGPSGCGKTTLLRIIAGLERQTAGT 60 (353)
T ss_pred eEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHCCCCCCceE
Confidence 34567889999988 999999999999999999999998776663
No 360
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=99.13 E-value=4.1e-10 Score=86.30 Aligned_cols=43 Identities=19% Similarity=0.181 Sum_probs=38.6
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++|+.+.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 19 ~~L~~vsl~i~~G--ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~ 61 (343)
T TIGR02314 19 QALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTSGS 61 (343)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 4688999999999 999999999999999999999998776663
No 361
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=99.13 E-value=7.5e-10 Score=78.17 Aligned_cols=44 Identities=20% Similarity=0.268 Sum_probs=39.0
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+..+.++++++++.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 4 ~~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G 47 (190)
T TIGR01166 4 GPEVLKGLNFAAERG--EVLALLGANGAGKSTLLLHLNGLLRPQSG 47 (190)
T ss_pred ccceecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 445788999999999 99999999999999999999998876655
No 362
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=99.13 E-value=4.6e-10 Score=81.36 Aligned_cols=43 Identities=16% Similarity=0.163 Sum_probs=38.3
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.+ ..++|+|+||+|||||++.|+|..++..|
T Consensus 20 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 62 (225)
T PRK10247 20 AKILNNISFSLRAG--EFKLITGPSGCGKSTLLKIVASLISPTSG 62 (225)
T ss_pred ceeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 45788899999999 99999999999999999999998766665
No 363
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=99.13 E-value=6.3e-10 Score=81.20 Aligned_cols=44 Identities=23% Similarity=0.188 Sum_probs=38.3
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.+++++++..+ ..++++|+||+|||||++.|+|..++..|.
T Consensus 14 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~ 57 (236)
T TIGR03864 14 RRALDDVSFTVRPG--EFVALLGPNGAGKSTLFSLLTRLYVAQEGQ 57 (236)
T ss_pred EEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCceE
Confidence 34678889999988 999999999999999999999998766653
No 364
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=99.13 E-value=6.5e-11 Score=84.74 Aligned_cols=46 Identities=30% Similarity=0.320 Sum_probs=39.9
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
|+-...++++++...+ .+++++||||+||||++|.|+|..+++.|.
T Consensus 15 GGl~Al~~Vsl~v~~G--ei~~LIGPNGAGKTTlfNlitG~~~P~~G~ 60 (250)
T COG0411 15 GGLTAVNDVSLEVRPG--EIVGLIGPNGAGKTTLFNLITGFYKPSSGT 60 (250)
T ss_pred CCEEEEeceeEEEcCC--eEEEEECCCCCCceeeeeeecccccCCCce
Confidence 3444578888999998 999999999999999999999999887764
No 365
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=99.13 E-value=5.2e-10 Score=81.19 Aligned_cols=41 Identities=29% Similarity=0.320 Sum_probs=37.3
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+.++++++++.| ..++++|+||+|||||++.|+|...+..|
T Consensus 25 ~l~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G 65 (228)
T PRK10584 25 ILTGVELVVKRG--ETIALIGESGSGKSTLLAILAGLDDGSSG 65 (228)
T ss_pred EEeccEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCe
Confidence 688889999998 99999999999999999999999876655
No 366
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.12 E-value=1.9e-10 Score=83.63 Aligned_cols=41 Identities=27% Similarity=0.290 Sum_probs=37.9
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.++++|+.|.| .+++++|+|||||||++++|+|...+.+|.
T Consensus 40 Vqdisf~IP~G--~ivgflGaNGAGKSTtLKmLTGll~p~~G~ 80 (325)
T COG4586 40 VQDISFEIPKG--EIVGFLGANGAGKSTTLKMLTGLLLPTSGK 80 (325)
T ss_pred hheeeeecCCC--cEEEEEcCCCCcchhhHHHHhCccccCCCe
Confidence 57889999999 999999999999999999999999887774
No 367
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=99.12 E-value=1e-10 Score=94.66 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=38.6
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| .+++++|++|||||||++.|+|...+..|.
T Consensus 349 ~vL~~isl~i~~G--~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~ 391 (529)
T TIGR02868 349 PVLDGVSLDLPPG--ERVAILGPSGSGKSTLLMLLTGLLDPLQGE 391 (529)
T ss_pred ceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 3678889999999 999999999999999999999998776664
No 368
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=99.12 E-value=1.3e-09 Score=80.60 Aligned_cols=47 Identities=28% Similarity=0.251 Sum_probs=39.8
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS 52 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~ 52 (174)
......++++.++++ ..++++||||||||||++.|+|...++.|...
T Consensus 14 ~~~a~~di~l~i~~G--e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~ 60 (345)
T COG1118 14 AFGALDDISLDIKSG--ELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60 (345)
T ss_pred cccccccceeeecCC--cEEEEECCCCCcHHHHHHHHhCcCCCCCceEE
Confidence 344456888999988 99999999999999999999999988777443
No 369
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.12 E-value=7.5e-10 Score=83.08 Aligned_cols=128 Identities=14% Similarity=0.198 Sum_probs=91.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc-----------------cccc--------------cCCCCcceeeEEEEEEEeC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRA-----------------FKSR--------------ASSSGVTSTCEMQRTVLKD 68 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~-----------------~~~~--------------~~~~~~t~~~~~~~~~~~~ 68 (174)
..|++-+|...-||||||-.|+-..+ ...+ +...++|.+.....+.. .
T Consensus 6 lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT-~ 84 (431)
T COG2895 6 LLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST-E 84 (431)
T ss_pred ceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeeccc-c
Confidence 38999999999999999977653211 0000 01137777776666555 7
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624 69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 69 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
++.+++.||||+.. +.+-+..-+..+|+.++++|+..++-.+++... .|..++|-+ ++++.+||+
T Consensus 85 KRkFIiADTPGHeQ-----------YTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs-~I~sLLGIr---hvvvAVNKm 149 (431)
T COG2895 85 KRKFIIADTPGHEQ-----------YTRNMATGASTADLAILLVDARKGVLEQTRRHS-FIASLLGIR---HVVVAVNKM 149 (431)
T ss_pred cceEEEecCCcHHH-----------HhhhhhcccccccEEEEEEecchhhHHHhHHHH-HHHHHhCCc---EEEEEEeee
Confidence 88999999999886 333333456677999999999867766666654 566666665 899999999
Q ss_pred CCCCCChhhHHHHhc
Q 030624 149 DELEDNDETLEDYLG 163 (174)
Q Consensus 149 D~~~~~~~~~~~~~~ 163 (174)
|+.+-.++.+++...
T Consensus 150 DLvdy~e~~F~~I~~ 164 (431)
T COG2895 150 DLVDYSEEVFEAIVA 164 (431)
T ss_pred cccccCHHHHHHHHH
Confidence 999877666655443
No 370
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=99.11 E-value=1.3e-09 Score=78.96 Aligned_cols=42 Identities=33% Similarity=0.388 Sum_probs=38.0
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++.+.| ..++++|+||+|||||++.|+|...+..|
T Consensus 19 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 60 (228)
T cd03257 19 KALDDVSFSIKKG--ETLGLVGESGSGKSTLARAILGLLKPTSG 60 (228)
T ss_pred eeecCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4788999999999 99999999999999999999998876665
No 371
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=99.11 E-value=1.7e-09 Score=77.59 Aligned_cols=43 Identities=23% Similarity=0.276 Sum_probs=39.1
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 51 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~ 51 (174)
+.++++|+...| .+++++|++|||||||.+.|+|...+..|..
T Consensus 22 ~l~~VS~~i~~G--e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I 64 (252)
T COG1124 22 ALNNVSLEIERG--ETLGIVGESGSGKSTLARLLAGLEKPSSGSI 64 (252)
T ss_pred hhcceeEEecCC--CEEEEEcCCCCCHHHHHHHHhcccCCCCceE
Confidence 678999999999 9999999999999999999999988877643
No 372
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=99.11 E-value=7.5e-10 Score=85.81 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=37.7
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++++.+ ..++++|+||||||||+++|+|...+..|.
T Consensus 28 ~~l~~vsl~i~~G--e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~ 70 (375)
T PRK09452 28 EVISNLDLTINNG--EFLTLLGPSGCGKTTVLRLIAGFETPDSGR 70 (375)
T ss_pred EEEeeeEEEEeCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 4567888999888 899999999999999999999998776653
No 373
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=99.11 E-value=1.5e-09 Score=78.05 Aligned_cols=40 Identities=28% Similarity=0.340 Sum_probs=35.4
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+++++...+ ..++++|+||+|||||++.|+|...+..|
T Consensus 14 ~~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 53 (213)
T TIGR01277 14 PMEFDLNVADG--EIVAIMGPSGAGKSTLLNLIAGFIEPASG 53 (213)
T ss_pred ceeeEEEEeCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 45778888888 99999999999999999999998876665
No 374
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=99.11 E-value=4.8e-10 Score=86.08 Aligned_cols=42 Identities=21% Similarity=0.173 Sum_probs=37.9
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+++.| ..++++|+||||||||++.|+|...+..|
T Consensus 19 ~il~~vsl~i~~G--ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G 60 (343)
T PRK11153 19 HALNNVSLHIPAG--EIFGVIGASGAGKSTLIRCINLLERPTSG 60 (343)
T ss_pred EEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 4678899999999 99999999999999999999999876665
No 375
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=99.11 E-value=8.5e-10 Score=81.59 Aligned_cols=43 Identities=28% Similarity=0.345 Sum_probs=38.3
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+++.+ ..++|+|+||+|||||++.|+|...+..|
T Consensus 15 ~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~p~~G 57 (258)
T PRK13548 15 RTLLDDVSLTLRPG--EVVAILGPNGAGKSTLLRALSGELSPDSG 57 (258)
T ss_pred eeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 34788899999998 99999999999999999999998776665
No 376
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.11 E-value=1.5e-09 Score=79.04 Aligned_cols=43 Identities=23% Similarity=0.175 Sum_probs=38.3
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++...| .+++++|+||+|||||++.|+|..++..|
T Consensus 13 ~~il~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~g~~~~~~G 55 (232)
T cd03300 13 FVALDGVSLDIKEG--EFFTLLGPSGCGKTTLLRLIAGFETPTSG 55 (232)
T ss_pred eeeeccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 35778899999988 99999999999999999999999877665
No 377
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=5.2e-10 Score=80.24 Aligned_cols=41 Identities=22% Similarity=0.127 Sum_probs=35.4
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+.+.+ +++++|+||+|||||++.|+|...+..|
T Consensus 14 ~~l~~vs~~i~~g---~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 54 (211)
T cd03264 14 RALDGVSLTLGPG---MYGLLGPNGAGKTTLMRILATLTPPSSG 54 (211)
T ss_pred EEEcceeEEEcCC---cEEEECCCCCCHHHHHHHHhCCCCCCcc
Confidence 4677888888885 8899999999999999999998776665
No 378
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.10 E-value=6.9e-10 Score=82.62 Aligned_cols=42 Identities=19% Similarity=0.243 Sum_probs=37.8
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++++.| ..++++|+||+|||||++.|+|...+..|
T Consensus 23 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 64 (271)
T PRK13632 23 NALKNVSFEINEG--EYVAILGHNGSGKSTISKILTGLLKPQSG 64 (271)
T ss_pred cceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4788899999998 99999999999999999999999876555
No 379
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=99.10 E-value=2.3e-10 Score=80.04 Aligned_cols=133 Identities=16% Similarity=0.146 Sum_probs=75.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.+.++++++.+.+ ..++++|+||+|||||++.|+|...+..|............ ...+ .....++.+.|.+... +
T Consensus 16 ~~l~~i~~~i~~G--e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~-~~~i~~~~q~~~~~~~-t 90 (178)
T cd03247 16 QVLKNLSLELKQG--EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKAL-SSLISVLNQRPYLFDT-T 90 (178)
T ss_pred cceEEEEEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHH-HhhEEEEccCCeeecc-c
Confidence 4778899999999 99999999999999999999998776555321111000000 0000 1122334444433321 1
Q ss_pred ChH-------HHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624 86 GSE-------FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 86 ~~~-------~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
..+ .-.++....++....+++++++ ..+++.++.... ..++.+.+. . . ..+++++||-
T Consensus 91 v~~~i~~~LS~G~~qrv~laral~~~p~~lll-DEP~~~LD~~~~~~l~~~l~~~-~-~--~~tii~~sh~ 156 (178)
T cd03247 91 LRNNLGRRFSGGERQRLALARILLQDAPIVLL-DEPTVGLDPITERQLLSLIFEV-L-K--DKTLIWITHH 156 (178)
T ss_pred HHHhhcccCCHHHHHHHHHHHHHhcCCCEEEE-ECCcccCCHHHHHHHHHHHHHH-c-C--CCEEEEEecC
Confidence 111 0123344555666777876654 344447887774 444555554 2 2 3577777774
No 380
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=99.10 E-value=1.4e-09 Score=79.46 Aligned_cols=43 Identities=33% Similarity=0.354 Sum_probs=37.8
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++...| .+++++|+||+|||||++.|+|...+..|
T Consensus 13 ~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 55 (237)
T TIGR00968 13 FQALDDVNLEVPTG--SLVALLGPSGSGKSTLLRIIAGLEQPDSG 55 (237)
T ss_pred eeeeeeEEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 35778889999998 99999999999999999999998766555
No 381
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=99.10 E-value=9.4e-10 Score=81.83 Aligned_cols=42 Identities=29% Similarity=0.349 Sum_probs=37.3
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+++.+ ..++|+|+||+|||||++.|+|...+..|
T Consensus 21 ~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 62 (269)
T PRK11831 21 CIFDNISLTVPRG--KITAIMGPSGIGKTTLLRLIGGQIAPDHG 62 (269)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4578889999999 99999999999999999999999866555
No 382
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.10 E-value=1.1e-09 Score=77.48 Aligned_cols=132 Identities=10% Similarity=0.025 Sum_probs=74.7
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc--cccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA--FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~--~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
.+.++++++.+.+ ..++++|+||+|||||++.|+|... +..|....... . .. ... .....++.+.|.+...
T Consensus 21 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~-~--~~-~~~-~~~i~~~~q~~~~~~~ 93 (192)
T cd03232 21 QLLNNISGYVKPG--TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGR-P--LD-KNF-QRSTGYVEQQDVHSPN 93 (192)
T ss_pred EeEEccEEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCE-e--hH-HHh-hhceEEecccCccccC
Confidence 4678889999988 9999999999999999999999642 33332111000 0 00 001 1233445555655443
Q ss_pred CCChHHH------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHHhhhhcCcEEEEEeCc
Q 030624 84 SAGSEFV------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 84 ~~~~~~~------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
.+..+.+ .++....++....+++++++ ..+...++...... .+.+.+. ... ..+++++||.
T Consensus 94 ~tv~~~l~~~~~~~~LSgGe~qrv~la~al~~~p~vlll-DEP~~~LD~~~~~~l~~~l~~~-~~~--~~tiiivtH~ 167 (192)
T cd03232 94 LTVREALRFSALLRGLSVEQRKRLTIGVELAAKPSILFL-DEPTSGLDSQAAYNIVRFLKKL-ADS--GQAILCTIHQ 167 (192)
T ss_pred CcHHHHHHHHHHHhcCCHHHhHHHHHHHHHhcCCcEEEE-eCCCcCCCHHHHHHHHHHHHHH-HHc--CCEEEEEEcC
Confidence 2222221 11222334455667775554 44444788887544 4444443 222 3678888886
No 383
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=99.10 E-value=1.3e-09 Score=80.15 Aligned_cols=43 Identities=16% Similarity=0.216 Sum_probs=37.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+++.| ..++++|+||+|||||++.|+|...+..|
T Consensus 16 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (250)
T PRK11264 16 QTVLHGIDLEVKPG--EVVAIIGPSGSGKTTLLRCINLLEQPEAG 58 (250)
T ss_pred eeeeccceEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCe
Confidence 35778899999998 99999999999999999999998766555
No 384
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=99.10 E-value=1e-09 Score=84.51 Aligned_cols=44 Identities=30% Similarity=0.398 Sum_probs=38.5
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.+++++++..+ ..++++|+||+|||||++.|+|...+..|.
T Consensus 15 ~~~l~~isl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G~ 58 (353)
T PRK10851 15 TQVLNDISLDIPSG--QMVALLGPSGSGKTTLLRIIAGLEHQTSGH 58 (353)
T ss_pred eEEEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 34678889999998 999999999999999999999998776653
No 385
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=99.09 E-value=7.9e-10 Score=80.87 Aligned_cols=43 Identities=23% Similarity=0.327 Sum_probs=37.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++.+.+ .+++++|+||+|||||++.|+|...+..|
T Consensus 14 ~~il~~~s~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 56 (240)
T PRK09493 14 TQVLHNIDLNIDQG--EVVVIIGPSGSGKSTLLRCINKLEEITSG 56 (240)
T ss_pred eEEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 34678889999988 99999999999999999999998776665
No 386
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=99.09 E-value=5.5e-10 Score=87.16 Aligned_cols=44 Identities=25% Similarity=0.295 Sum_probs=38.7
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+..+.++++|+.+.| .+++++|+||+|||||+++|+|..++..|
T Consensus 15 ~~~vL~~vs~~i~~G--eiv~liGpNGaGKSTLLk~LaGll~p~sG 58 (402)
T PRK09536 15 DTTVLDGVDLSVREG--SLVGLVGPNGAGKTTLLRAINGTLTPTAG 58 (402)
T ss_pred CEEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCCc
Confidence 345678899999999 99999999999999999999998776665
No 387
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=99.09 E-value=5.1e-10 Score=90.29 Aligned_cols=43 Identities=23% Similarity=0.227 Sum_probs=38.1
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+++.| ..++++|+||||||||++.|+|...+..|
T Consensus 24 ~~il~~vsl~i~~G--e~~~liG~NGsGKSTLl~~l~Gl~~p~~G 66 (510)
T PRK15439 24 VEVLKGIDFTLHAG--EVHALLGGNGAGKSTLMKIIAGIVPPDSG 66 (510)
T ss_pred ceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 34678999999998 99999999999999999999998876655
No 388
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=6.8e-10 Score=81.06 Aligned_cols=42 Identities=21% Similarity=0.268 Sum_probs=37.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++...| ..++++|+||+|||||++.|+|...+..|
T Consensus 19 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G 60 (237)
T PRK11614 19 QALHEVSLHINQG--EIVTLIGANGAGKTTLLGTLCGDPRATSG 60 (237)
T ss_pred eeeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 4678889999998 99999999999999999999998876665
No 389
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=5.6e-10 Score=83.02 Aligned_cols=41 Identities=27% Similarity=0.413 Sum_probs=37.1
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+.++++++++.+ ..++|+|+||+|||||++.|+|...+..|
T Consensus 24 ~l~~isl~i~~G--e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G 64 (269)
T PRK13648 24 TLKDVSFNIPKG--QWTSIVGHNGSGKSTIAKLMIGIEKVKSG 64 (269)
T ss_pred ceeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 678889999998 99999999999999999999999776665
No 390
>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.09 E-value=8.5e-10 Score=72.46 Aligned_cols=125 Identities=16% Similarity=0.189 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccc-cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSR-ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+..++|.-|+|||.|+-.++.... ... .-..+....+.+..+.- .+..+.+|||.|..+ ++...+
T Consensus 12 fkyiiigdmgvgkscllhqftekkf-madcphtigvefgtriievsg-qkiklqiwdtagqer-----------fravtr 78 (215)
T KOG0097|consen 12 FKYIIIGDMGVGKSCLLHQFTEKKF-MADCPHTIGVEFGTRIIEVSG-QKIKLQIWDTAGQER-----------FRAVTR 78 (215)
T ss_pred EEEEEEccccccHHHHHHHHHHHHH-hhcCCcccceecceeEEEecC-cEEEEEEeecccHHH-----------HHHHHH
Confidence 5778999999999999988776542 222 11112222222333322 345689999999887 777777
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHH
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLED 160 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~ 160 (174)
..++++...++|.|.+.+-+... ..|+...+.+..+. ..++++.||+|+.......+++
T Consensus 79 syyrgaagalmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yee 138 (215)
T KOG0097|consen 79 SYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEE 138 (215)
T ss_pred HHhccccceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHH
Confidence 88899999999999985544443 56666655554322 3567889999987655455554
No 391
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]
Probab=99.09 E-value=3.8e-10 Score=81.21 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=75.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.-|++++|-+.+|||||+..|++... ........|..|-...++| ++-.+.+.|.||+.++.++..-.+++...
T Consensus 62 daRValIGfPSVGKStlLs~iT~T~S--eaA~yeFTTLtcIpGvi~y-~ga~IQllDLPGIieGAsqgkGRGRQvia--- 135 (364)
T KOG1486|consen 62 DARVALIGFPSVGKSTLLSKITSTHS--EAASYEFTTLTCIPGVIHY-NGANIQLLDLPGIIEGASQGKGRGRQVIA--- 135 (364)
T ss_pred CeEEEEecCCCccHHHHHHHhhcchh--hhhceeeeEEEeecceEEe-cCceEEEecCcccccccccCCCCCceEEE---
Confidence 37999999999999999999998753 2223344555555555566 88899999999999987777666666654
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK 136 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~ 136 (174)
.++.+|.+++|+|++ .- ...++.++.-.+..|.+
T Consensus 136 -vArtaDlilMvLDat-k~-e~qr~~le~ELe~vGiR 169 (364)
T KOG1486|consen 136 -VARTADLILMVLDAT-KS-EDQREILEKELEAVGIR 169 (364)
T ss_pred -EeecccEEEEEecCC-cc-hhHHHHHHHHHHHhcee
Confidence 345669999999998 32 22344444333333444
No 392
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=99.09 E-value=2.2e-09 Score=78.17 Aligned_cols=39 Identities=31% Similarity=0.345 Sum_probs=34.6
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+++++...+ ..++++|+||+|||||++.|+|...+..|
T Consensus 16 ~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 54 (232)
T PRK10771 16 MRFDLTVERG--ERVAILGPSGAGKSTLLNLIAGFLTPASG 54 (232)
T ss_pred ceeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 3778888888 99999999999999999999998876665
No 393
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=99.09 E-value=2.2e-09 Score=78.07 Aligned_cols=39 Identities=31% Similarity=0.314 Sum_probs=34.5
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
++++++++.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 2 ~~is~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 40 (230)
T TIGR01184 2 KGVNLTIQQG--EFISLIGHSGCGKSTLLNLISGLAQPTSG 40 (230)
T ss_pred CceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4678888888 99999999999999999999999876655
No 394
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.08 E-value=1.1e-09 Score=80.19 Aligned_cols=43 Identities=21% Similarity=0.131 Sum_probs=37.8
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.+++++++..+ ..++++|+||+|||||++.|+|...+..|
T Consensus 16 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 58 (241)
T PRK14250 16 KEILKDISVKFEGG--AIYTIVGPSGAGKSTLIKLINRLIDPTEG 58 (241)
T ss_pred eeeeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34678899999988 99999999999999999999998766665
No 395
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=99.08 E-value=5e-10 Score=78.20 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=49.1
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
..+++|+...| ..++++|+||+||||+++.|.+...|+.|...... ......+..+ ..+...+.+-.|+++..+
T Consensus 18 vrdVSF~ae~G--ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg-~d~~~~p~~v-rr~IGVl~~e~glY~RlT 91 (245)
T COG4555 18 VRDVSFEAEEG--EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDG-VDTVRDPSFV-RRKIGVLFGERGLYARLT 91 (245)
T ss_pred hhheeEEeccc--eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEee-cccccChHHH-hhhcceecCCcChhhhhh
Confidence 35678888888 99999999999999999999998877666322111 1111112222 334455667777776444
No 396
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=99.08 E-value=2.4e-09 Score=77.47 Aligned_cols=42 Identities=31% Similarity=0.306 Sum_probs=37.3
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.+++++++..+ ..++++|+||+|||||++.|+|..++..|
T Consensus 14 ~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (223)
T TIGR03740 14 TAVNNISLTVPKN--SVYGLLGPNGAGKSTLLKMITGILRPTSG 55 (223)
T ss_pred EEEeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4678889999988 99999999999999999999998766665
No 397
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=99.08 E-value=8e-10 Score=84.12 Aligned_cols=46 Identities=26% Similarity=0.224 Sum_probs=40.2
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 51 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~ 51 (174)
...+.+++++++..| ..++++||+||||||++++|+|...+++|..
T Consensus 17 ~~~av~~isl~i~~G--ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I 62 (352)
T COG3842 17 DFTAVDDISLDIKKG--EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62 (352)
T ss_pred CeeEEecceeeecCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCceE
Confidence 345578889999998 9999999999999999999999998877743
No 398
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=7.8e-10 Score=82.08 Aligned_cols=43 Identities=21% Similarity=0.269 Sum_probs=37.8
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|++..+ ..++|+|+||+|||||++.|+|..++..|
T Consensus 24 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 66 (265)
T PRK10575 24 RTLLHPLSLTFPAG--KVTGLIGHNGSGKSTLLKMLGRHQPPSEG 66 (265)
T ss_pred EEEEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 34678889999998 99999999999999999999998766555
No 399
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=99.08 E-value=1e-08 Score=74.26 Aligned_cols=93 Identities=18% Similarity=0.089 Sum_probs=57.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC-cccccccCCCCcceeeEEEEEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGR-RAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~-~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
-..|+++|++++|||||+|.|++. ..+..+.....+|...-....... .+..+.++||||+.+...........+..
T Consensus 7 v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~ 86 (224)
T cd01851 7 VAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFA 86 (224)
T ss_pred EEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHH
Confidence 368999999999999999999998 345555444445553333322221 24689999999999855433011111111
Q ss_pred HHHhccCCceEEEEEEeCC
Q 030624 97 CIGMAKDGIHAVLVVFSVR 115 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~ 115 (174)
... .-+++++|.++..
T Consensus 87 l~~---llss~~i~n~~~~ 102 (224)
T cd01851 87 LAT---LLSSVLIYNSWET 102 (224)
T ss_pred HHH---HHhCEEEEeccCc
Confidence 111 1248888877664
No 400
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=6.6e-10 Score=83.07 Aligned_cols=41 Identities=22% Similarity=0.234 Sum_probs=37.5
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+.+++++++..| ..++|+|+||+|||||++.|+|...+..|
T Consensus 22 ~l~~vsl~i~~G--e~~~i~G~nGaGKSTLl~~i~G~~~p~~G 62 (279)
T PRK13635 22 ALKDVSFSVYEG--EWVAIVGHNGSGKSTLAKLLNGLLLPEAG 62 (279)
T ss_pred ceeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 778899999998 99999999999999999999999877665
No 401
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.08 E-value=2.2e-09 Score=76.59 Aligned_cols=40 Identities=23% Similarity=0.318 Sum_probs=35.9
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
+..+.++.+++.+.+ ..++++|+||+|||||++.|+|...
T Consensus 19 ~~~il~~~s~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 19 KIPILKDFSGVVKPG--EMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred CceeeeeEEEEECCC--cEEEEECCCCCCHHHHHHHhcccCC
Confidence 345678899999998 9999999999999999999999876
No 402
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=99.08 E-value=9.5e-10 Score=80.54 Aligned_cols=43 Identities=28% Similarity=0.254 Sum_probs=38.2
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++...+ ..++++|+||+|||||++.|+|...+..|
T Consensus 15 ~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 57 (242)
T PRK11124 15 HQALFDITLDCPQG--ETLVLLGPSGAGKSSLLRVLNLLEMPRSG 57 (242)
T ss_pred eeeEeeeeeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 45778889999988 99999999999999999999998776555
No 403
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=99.08 E-value=2e-09 Score=77.40 Aligned_cols=42 Identities=14% Similarity=0.200 Sum_probs=37.2
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+.++++|+++.+ ..++++|+||+|||||++.|+|..++..|.
T Consensus 2 vl~~vs~~i~~G--e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~ 43 (213)
T PRK15177 2 VLDKTDFVMGYH--EHIGILAAPGSGKTTLTRLLCGLDAPDEGD 43 (213)
T ss_pred eeeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCCCC
Confidence 467889999999 999999999999999999999988766654
No 404
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=99.08 E-value=1.2e-09 Score=84.40 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=36.8
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 48 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~ 48 (174)
.+.++++++.+.+ ..++++|+||+|||||++.|+|...+..
T Consensus 19 ~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~ 59 (362)
T TIGR03258 19 TVLDDLSLEIEAG--ELLALIGKSGCGKTTLLRAIAGFVKAAG 59 (362)
T ss_pred EEEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 4678889999988 8999999999999999999999887766
No 405
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.07 E-value=3.5e-09 Score=81.56 Aligned_cols=123 Identities=17% Similarity=0.265 Sum_probs=85.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh--CCccccccc------------------CCCCcceeeEEEEEEEeCCcEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSIL--GRRAFKSRA------------------SSSGVTSTCEMQRTVLKDGQVVNVIDTP 78 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~--~~~~~~~~~------------------~~~~~t~~~~~~~~~~~~~~~~~~iDtp 78 (174)
+.++.+||.++.+|||||-..|+ |......|. ...+++..+.+..+.| ++..+.+.|||
T Consensus 11 rRRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y-~~~~iNLLDTP 89 (528)
T COG4108 11 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDY-ADCLVNLLDTP 89 (528)
T ss_pred hhcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEecc-CCeEEeccCCC
Confidence 44789999999999999986653 222222221 1126677777888888 88999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624 79 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL 158 (174)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~ 158 (174)
|+.+++ + +..+.+.+ +|..++|+|+.-++.+.+.+.++--+ .+. .|++-.+||+|....+...+
T Consensus 90 GHeDFS---E----DTYRtLtA----vDsAvMVIDaAKGiE~qT~KLfeVcr----lR~-iPI~TFiNKlDR~~rdP~EL 153 (528)
T COG4108 90 GHEDFS---E----DTYRTLTA----VDSAVMVIDAAKGIEPQTLKLFEVCR----LRD-IPIFTFINKLDREGRDPLEL 153 (528)
T ss_pred Cccccc---h----hHHHHHHh----hheeeEEEecccCccHHHHHHHHHHh----hcC-CceEEEeeccccccCChHHH
Confidence 999965 2 23333333 39999999997688888877664222 221 59999999999876544443
No 406
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=1e-09 Score=85.63 Aligned_cols=41 Identities=20% Similarity=0.121 Sum_probs=36.9
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..++++|+++.+ ..++|+|+||+|||||++.|+|...+..|
T Consensus 43 ~L~~isl~i~~G--ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG 83 (400)
T PRK10070 43 GVKDASLAIEEG--EIFVIMGLSGSGKSTMVRLLNRLIEPTRG 83 (400)
T ss_pred EEEeEEEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCC
Confidence 467889999998 99999999999999999999999877665
No 407
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=99.07 E-value=1.8e-09 Score=80.20 Aligned_cols=43 Identities=28% Similarity=0.363 Sum_probs=38.5
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.| ..++|+|+||+|||||++.|+|...+.+|
T Consensus 24 ~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 66 (265)
T TIGR02769 24 APVLTNVSLSIEEG--ETVGLLGRSGCGKSTLARLLLGLEKPAQG 66 (265)
T ss_pred eEEeeCceeEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34788999999999 99999999999999999999999876665
No 408
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=99.07 E-value=1.1e-09 Score=79.92 Aligned_cols=42 Identities=26% Similarity=0.207 Sum_probs=37.2
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++.+.+ ..++++|+||||||||++.|+|..++..|
T Consensus 14 ~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 55 (236)
T cd03219 14 VALDDVSFSVRPG--EIHGLIGPNGAGKTTLFNLISGFLRPTSG 55 (236)
T ss_pred EEecCceEEecCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 3678889999988 99999999999999999999998766555
No 409
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=99.07 E-value=1.3e-10 Score=78.96 Aligned_cols=47 Identities=19% Similarity=0.240 Sum_probs=41.2
Q ss_pred CCCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 2 MGGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+...+..+++++...| ..++++||+|+|||||++.++....++.|.
T Consensus 13 a~~a~il~~isl~v~~G--e~iaitGPSG~GKStllk~va~Lisp~~G~ 59 (223)
T COG4619 13 AGDAKILNNISLSVRAG--EFIAITGPSGCGKSTLLKIVASLISPTSGT 59 (223)
T ss_pred cCCCeeecceeeeecCC--ceEEEeCCCCccHHHHHHHHHhccCCCCce
Confidence 35667889999999999 999999999999999999999988776663
No 410
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=99.07 E-value=1.4e-09 Score=84.37 Aligned_cols=42 Identities=26% Similarity=0.241 Sum_probs=37.0
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++.+.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 33 ~~l~~vsl~i~~G--e~~~llGpsGsGKSTLLr~IaGl~~p~~G 74 (377)
T PRK11607 33 HAVDDVSLTIYKG--EIFALLGASGCGKSTLLRMLAGFEQPTAG 74 (377)
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCce
Confidence 3567888999888 89999999999999999999999877665
No 411
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.07 E-value=6.5e-10 Score=79.35 Aligned_cols=145 Identities=17% Similarity=0.089 Sum_probs=85.0
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE--eCCcEEEEEeCCCC
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGL 80 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~ 80 (174)
++.-..++++++++.+ ..|+++|++|||||||+++|.+...+..|.........+....-.. ...+..++..-|.+
T Consensus 15 ~~~~aL~~Vnl~I~~G--E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nL 92 (258)
T COG3638 15 GGHQALKDVNLEINQG--EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92 (258)
T ss_pred CCceeeeeEeEEeCCC--cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCc
Confidence 3445678899999999 9999999999999999999999766555522221111111110000 01234566666665
Q ss_pred CCCCCChHHH-------------------------------------------------HHHHHHHHHhccCCceEEEEE
Q 030624 81 FDFSAGSEFV-------------------------------------------------GKEIVKCIGMAKDGIHAVLVV 111 (174)
Q Consensus 81 ~~~~~~~~~~-------------------------------------------------~~~~~~~~~~~~~~~~~il~v 111 (174)
.......+.+ .++-..+++...+++..++-
T Consensus 93 v~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILA- 171 (258)
T COG3638 93 VPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILA- 171 (258)
T ss_pred ccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEec-
Confidence 5432211111 12333444555667775554
Q ss_pred EeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 112 FSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 112 ~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
..+...+++.. ...++.|++...++. .-+++.+..+|++
T Consensus 172 DEPvasLDp~~a~~Vm~~l~~in~~~g-~Tvi~nLH~vdlA 211 (258)
T COG3638 172 DEPVASLDPESAKKVMDILKDINQEDG-ITVIVNLHQVDLA 211 (258)
T ss_pred CCcccccChhhHHHHHHHHHHHHHHcC-CEEEEEechHHHH
Confidence 33333777776 788888888865542 2344445555664
No 412
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.07 E-value=1.1e-09 Score=80.12 Aligned_cols=43 Identities=26% Similarity=0.239 Sum_probs=38.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.+++++++..| ..++++|+||+|||||++.|+|...+..|
T Consensus 14 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 56 (241)
T cd03256 14 KKALKDVSLSINPG--EFVALIGPSGAGKSTLLRCLNGLVEPTSG 56 (241)
T ss_pred cEEEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 34778899999999 99999999999999999999998766555
No 413
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.06 E-value=1.3e-09 Score=81.32 Aligned_cols=42 Identities=17% Similarity=0.239 Sum_probs=38.0
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+++.| ..++|+|+||+|||||++.|+|...+..|
T Consensus 16 ~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (274)
T PRK13644 16 PALENINLVIKKG--EYIGIIGKNGSGKSTLALHLNGLLRPQKG 57 (274)
T ss_pred ceeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 4788999999999 99999999999999999999998776665
No 414
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=99.06 E-value=1.9e-09 Score=80.15 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=38.2
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++++.+ .+++|+|+||+|||||++.|+|...+..|
T Consensus 27 ~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G 68 (267)
T PRK15112 27 EAVKPLSFTLREG--QTLAIIGENGSGKSTLAKMLAGMIEPTSG 68 (267)
T ss_pred ceeeeeeEEecCC--CEEEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 4788999999999 99999999999999999999999877666
No 415
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=99.06 E-value=2.6e-09 Score=78.72 Aligned_cols=43 Identities=19% Similarity=0.331 Sum_probs=37.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+++.+ .+++++|+||+|||||++.|+|...+..|
T Consensus 13 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 55 (252)
T TIGR03005 13 LTVLDGLNFSVAAG--EKVALIGPSGSGKSTILRILMTLEPIDEG 55 (252)
T ss_pred eeEEeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 34678899999998 99999999999999999999998776555
No 416
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=99.06 E-value=1.2e-09 Score=81.09 Aligned_cols=42 Identities=14% Similarity=0.248 Sum_probs=37.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++...| .+++|+|+||+|||||++.|+|...+..|
T Consensus 21 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G 62 (265)
T PRK10253 21 TVAENLTVEIPDG--HFTAIIGPNGCGKSTLLRTLSRLMTPAHG 62 (265)
T ss_pred EEeeecceEECCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCc
Confidence 4678899999998 99999999999999999999998766555
No 417
>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]
Probab=99.06 E-value=5.8e-11 Score=77.17 Aligned_cols=113 Identities=13% Similarity=0.140 Sum_probs=79.2
Q ss_pred EEcCCCCCHHHHHHHHhCCcccccc--cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhcc
Q 030624 25 LVGRTGNGKSATGNSILGRRAFKSR--ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAK 102 (174)
Q Consensus 25 i~G~~g~GKStlin~l~~~~~~~~~--~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~ 102 (174)
++|.+++|||.|+-..-..... .+ .+..++........... .+..+.+|||.|..+ ++......+
T Consensus 2 llgds~~gktcllir~kdgafl-~~~fistvgid~rnkli~~~~-~kvklqiwdtagqer-----------frsvt~ayy 68 (192)
T KOG0083|consen 2 LLGDSCTGKTCLLIRFKDGAFL-AGNFISTVGIDFRNKLIDMDD-KKVKLQIWDTAGQER-----------FRSVTHAYY 68 (192)
T ss_pred ccccCccCceEEEEEeccCcee-cCceeeeeeeccccceeccCC-cEEEEEEeeccchHH-----------HhhhhHhhh
Confidence 6899999999876443332211 21 11222222222332222 345789999999987 666666788
Q ss_pred CCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 103 DGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 103 ~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+.+|.++++.|..++.+.+. +.|+..|.++..+.+ .+.++.||+|+..
T Consensus 69 rda~allllydiankasfdn~~~wlsei~ey~k~~v--~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 69 RDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAV--ALMLLGNKCDLAH 117 (192)
T ss_pred cccceeeeeeecccchhHHHHHHHHHHHHHHHHhhH--hHhhhccccccch
Confidence 99999999999987777665 899999999976663 7889999999964
No 418
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=99.06 E-value=1.1e-09 Score=84.81 Aligned_cols=44 Identities=20% Similarity=0.219 Sum_probs=38.4
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++|+++.+ ..++|+|+||+|||||++.|+|...+..|.
T Consensus 37 ~~~l~~vsf~i~~G--ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~ 80 (382)
T TIGR03415 37 VVGVANASLDIEEG--EICVLMGLSGSGKSSLLRAVNGLNPVSRGS 80 (382)
T ss_pred EEEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 34568889999998 999999999999999999999998776663
No 419
>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.05 E-value=1.9e-09 Score=86.81 Aligned_cols=129 Identities=21% Similarity=0.223 Sum_probs=82.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-----------------------------------------Ccceee
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----------------------------------------GVTSTC 59 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~-----------------------------------------~~t~~~ 59 (174)
.+|+|.|.+++||||++|+++-....++|.... ......
T Consensus 110 mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~~~~ 189 (749)
T KOG0448|consen 110 MKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDLGAG 189 (749)
T ss_pred cEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCcccccCcc
Confidence 689999999999999999998776554442110 001111
Q ss_pred EEEEEEEeCC------cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Q 030624 60 EMQRTVLKDG------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF 133 (174)
Q Consensus 60 ~~~~~~~~~~------~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~ 133 (174)
....+.|+++ ..+.++|.||+.-... ....+. .+...+|+++||+.+.+.++....+++....+.
T Consensus 190 sLlrV~~p~~~csLLrnDivliDsPGld~~se----~tswid----~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~- 260 (749)
T KOG0448|consen 190 SLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE----LTSWID----SFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE- 260 (749)
T ss_pred eEEEEEecCccchhhhccceeccCCCCCCchh----hhHHHH----HHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-
Confidence 1122233222 2478999999986321 112222 344566999999999877777777776555543
Q ss_pred hhhhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624 134 GKKIFDYMIVVFTGGDELEDNDETLEDYL 162 (174)
Q Consensus 134 ~~~~~~~~~iv~tk~D~~~~~~~~~~~~~ 162 (174)
+++++|+.||||....+..-.++..
T Consensus 261 ----KpniFIlnnkwDasase~ec~e~V~ 285 (749)
T KOG0448|consen 261 ----KPNIFILNNKWDASASEPECKEDVL 285 (749)
T ss_pred ----CCcEEEEechhhhhcccHHHHHHHH
Confidence 3789999999999877533334433
No 420
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=99.05 E-value=1.1e-09 Score=79.03 Aligned_cols=43 Identities=26% Similarity=0.315 Sum_probs=38.3
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+.+.| .+++|+|+||+|||||++.|+|..++..|
T Consensus 18 ~~il~~vs~~i~~G--~~~~I~G~nGsGKStLl~~l~G~~~~~~G 60 (220)
T TIGR02982 18 KQVLFDINLEINPG--EIVILTGPSGSGKTTLLTLIGGLRSVQEG 60 (220)
T ss_pred eeEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 34788999999998 99999999999999999999998776655
No 421
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.05 E-value=6.1e-10 Score=81.78 Aligned_cols=119 Identities=17% Similarity=0.237 Sum_probs=85.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 84 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~ 84 (174)
+.-.|+.+|+...|||||-.+|+..-.-. ......+.|.......++. .++.+..+|+||.-+
T Consensus 11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet-~~rhyahVDcPGHaD-- 87 (394)
T COG0050 11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYET-ANRHYAHVDCPGHAD-- 87 (394)
T ss_pred CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEec-CCceEEeccCCChHH--
Confidence 34789999999999999998876532100 0112235666666655555 677889999999876
Q ss_pred CChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+.++ ..+.+.|..|+|+.++++.-+++++.+-..++. +- +.+++++||+|..++
T Consensus 88 -----YvKNMI----tgAaqmDgAILVVsA~dGpmPqTrEHiLlarqv-Gv---p~ivvflnK~Dmvdd 143 (394)
T COG0050 88 -----YVKNMI----TGAAQMDGAILVVAATDGPMPQTREHILLARQV-GV---PYIVVFLNKVDMVDD 143 (394)
T ss_pred -----HHHHHh----hhHHhcCccEEEEEcCCCCCCcchhhhhhhhhc-CC---cEEEEEEecccccCc
Confidence 344444 445566999999999888889998887544444 43 378999999999985
No 422
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=99.05 E-value=4.2e-10 Score=92.28 Aligned_cols=42 Identities=26% Similarity=0.427 Sum_probs=37.0
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.++| .+++++|++|+|||||++.|+|.. +..|.
T Consensus 364 ~vL~~i~l~i~~G--~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~ 405 (588)
T PRK11174 364 TLAGPLNFTLPAG--QRIALVGPSGAGKTSLLNALLGFL-PYQGS 405 (588)
T ss_pred eeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCC-CCCcE
Confidence 4678889999999 999999999999999999999988 55553
No 423
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=99.05 E-value=2.8e-09 Score=82.24 Aligned_cols=39 Identities=26% Similarity=0.376 Sum_probs=34.4
Q ss_pred ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+++++.+.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 15 ~isl~i~~G--ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~ 53 (354)
T TIGR02142 15 DADFTLPGQ--GVTAIFGRSGSGKTTLIRLIAGLTRPDEGE 53 (354)
T ss_pred EEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 678888888 899999999999999999999998766653
No 424
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.05 E-value=7.1e-10 Score=77.05 Aligned_cols=55 Identities=38% Similarity=0.483 Sum_probs=40.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~ 80 (174)
.+++++|.+|+|||||+|+|++......+. .++.|... ..+.+ +..+.++||||+
T Consensus 118 ~~~~~vG~pnvGKSslin~l~~~~~~~~~~-~pg~T~~~--~~~~~--~~~~~l~DtPGi 172 (172)
T cd04178 118 ITVGVVGFPNVGKSSLINSLKRSRACNVGA-TPGVTKSM--QEVHL--DKKVKLLDSPGI 172 (172)
T ss_pred cEEEEEcCCCCCHHHHHHHHhCcccceecC-CCCeEcce--EEEEe--CCCEEEEECcCC
Confidence 689999999999999999999987654542 33444432 22222 356899999996
No 425
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=99.05 E-value=1.7e-09 Score=79.18 Aligned_cols=43 Identities=21% Similarity=0.166 Sum_probs=38.3
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.+ ..++++|+||+|||||++.|+|..++..|
T Consensus 15 ~~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 57 (243)
T TIGR02315 15 KQALKNINLNINPG--EFVAIIGPSGAGKSTLLRCINRLVEPSSG 57 (243)
T ss_pred cceeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 35788999999999 99999999999999999999998876555
No 426
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=99.04 E-value=1.4e-09 Score=80.32 Aligned_cols=43 Identities=26% Similarity=0.310 Sum_probs=38.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.+++++++..| .+++|+|+||+|||||++.|+|..++..|
T Consensus 14 ~~il~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~~~~G 56 (256)
T TIGR03873 14 RLIVDGVDVTAPPG--SLTGLLGPNGSGKSTLLRLLAGALRPDAG 56 (256)
T ss_pred EEEEeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 35678889999988 99999999999999999999998776555
No 427
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=99.04 E-value=2.9e-09 Score=82.10 Aligned_cols=39 Identities=28% Similarity=0.393 Sum_probs=34.3
Q ss_pred ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+++++.+.+ ..++++|+||+|||||++.|+|...+..|.
T Consensus 16 ~vsl~i~~G--e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~ 54 (352)
T PRK11144 16 TVNLTLPAQ--GITAIFGRSGAGKTSLINAISGLTRPQKGR 54 (352)
T ss_pred EEEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 678888888 899999999999999999999988766653
No 428
>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=4.3e-09 Score=83.43 Aligned_cols=138 Identities=19% Similarity=0.262 Sum_probs=91.7
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc---c-----------cc---------------cccCCCCcceeeEE
Q 030624 11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRR---A-----------FK---------------SRASSSGVTSTCEM 61 (174)
Q Consensus 11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~---~-----------~~---------------~~~~~~~~t~~~~~ 61 (174)
++...+.-....++++|+..+|||||+-.|+=.. - .. ..+...+.|.....
T Consensus 168 ~~~q~~~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~ 247 (603)
T KOG0458|consen 168 IDEQSDPKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKT 247 (603)
T ss_pred cccccCCccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeee
Confidence 3444555567889999999999999987654210 0 00 01122366666666
Q ss_pred EEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCC-----CC--CHHHHHHHHHHHHHHh
Q 030624 62 QRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-----RF--SQEEEAALHSLQTLFG 134 (174)
Q Consensus 62 ~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-----~~--~~~~~~~l~~l~~~~~ 134 (174)
..++. +...+.++|+||+.++ ..-+-..+..+|+.++|+|++. ++ ....+++...++.+ |
T Consensus 248 ~~fes-~~~~~tliDaPGhkdF-----------i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~L-g 314 (603)
T KOG0458|consen 248 TWFES-KSKIVTLIDAPGHKDF-----------IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSL-G 314 (603)
T ss_pred EEEec-CceeEEEecCCCcccc-----------chhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHc-C
Confidence 66664 6778999999998773 3333345677899999999861 22 23346666555554 4
Q ss_pred hhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624 135 KKIFDYMIVVFTGGDELEDNDETLEDYLGR 164 (174)
Q Consensus 135 ~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 164 (174)
. ...+|++||+|+..=.+.+.++..++
T Consensus 315 i---~qlivaiNKmD~V~Wsq~RF~eIk~~ 341 (603)
T KOG0458|consen 315 I---SQLIVAINKMDLVSWSQDRFEEIKNK 341 (603)
T ss_pred c---ceEEEEeecccccCccHHHHHHHHHH
Confidence 2 48999999999998665666665443
No 429
>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]
Probab=99.04 E-value=4.1e-09 Score=83.35 Aligned_cols=141 Identities=18% Similarity=0.174 Sum_probs=99.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----------------------------------------------
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS---------------------------------------------- 53 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~---------------------------------------------- 53 (174)
-+|++++|...+||||.+.+++....|+.|....
T Consensus 308 LPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RM 387 (980)
T KOG0447|consen 308 LPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRM 387 (980)
T ss_pred CceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHHHHHH
Confidence 3899999999999999999999887776653211
Q ss_pred ------CcceeeEEEEEEE--eCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHH
Q 030624 54 ------GVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEE 123 (174)
Q Consensus 54 ------~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~ 123 (174)
+.|.......... +.-++..++|.||+..+.+ ...++...+.+..+.....+++||+|+.-. ..+.+..
T Consensus 388 r~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQDG-SVDAERS 466 (980)
T KOG0447|consen 388 RKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQDG-SVDAERS 466 (980)
T ss_pred HhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEeccC-Ccchhhh
Confidence 4454444444444 1225689999999987544 344566677788888889999999999776 6666665
Q ss_pred HHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC---hhhHHHHhc
Q 030624 124 AALHSLQTLFGKKIFDYMIVVFTGGDELEDN---DETLEDYLG 163 (174)
Q Consensus 124 ~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~---~~~~~~~~~ 163 (174)
..-+...+.-+.. +++|+|+||+|++..+ ..++.+.+.
T Consensus 467 nVTDLVsq~DP~G--rRTIfVLTKVDlAEknlA~PdRI~kIle 507 (980)
T KOG0447|consen 467 IVTDLVSQMDPHG--RRTIFVLTKVDLAEKNVASPSRIQQIIE 507 (980)
T ss_pred hHHHHHHhcCCCC--CeeEEEEeecchhhhccCCHHHHHHHHh
Confidence 5555555543223 6899999999997642 244555554
No 430
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=99.04 E-value=5.9e-09 Score=76.80 Aligned_cols=42 Identities=26% Similarity=0.324 Sum_probs=37.2
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+++.+ ..++|+|+||+|||||++.|+|...+..|
T Consensus 18 ~vl~~vs~~i~~G--e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G 59 (251)
T PRK09544 18 RVLSDVSLELKPG--KILTLLGPNGAGKSTLVRVVLGLVAPDEG 59 (251)
T ss_pred eEEEeEEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 4678889999998 99999999999999999999998766555
No 431
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.04 E-value=2e-09 Score=80.10 Aligned_cols=43 Identities=21% Similarity=0.151 Sum_probs=38.5
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++...| .+++|+|+||+|||||++.|+|...+..|
T Consensus 14 ~~il~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 56 (271)
T PRK13638 14 EPVLKGLNLDFSLS--PVTGLVGANGCGKSTLFMNLSGLLRPQKG 56 (271)
T ss_pred cccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCcc
Confidence 45788999999998 99999999999999999999998876665
No 432
>PRK13768 GTPase; Provisional
Probab=99.04 E-value=1.5e-09 Score=79.94 Aligned_cols=80 Identities=18% Similarity=0.157 Sum_probs=50.4
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCC
Q 030624 71 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 150 (174)
Q Consensus 71 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~ 150 (174)
.+.++|+||..+.... ......+.+.+.... ++++++++|+....+..+......+..........|+++|+||+|+
T Consensus 98 ~~~~~d~~g~~~~~~~-~~~~~~~~~~l~~~~--~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~ 174 (253)
T PRK13768 98 DYVLVDTPGQMELFAF-RESGRKLVERLSGSS--KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADL 174 (253)
T ss_pred CEEEEeCCcHHHHHhh-hHHHHHHHHHHHhcC--CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhh
Confidence 5899999998763321 233444444444322 7999999999755556664444333322111223699999999999
Q ss_pred CCC
Q 030624 151 LED 153 (174)
Q Consensus 151 ~~~ 153 (174)
...
T Consensus 175 ~~~ 177 (253)
T PRK13768 175 LSE 177 (253)
T ss_pred cCc
Confidence 876
No 433
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=99.04 E-value=2e-09 Score=79.55 Aligned_cols=43 Identities=16% Similarity=0.168 Sum_probs=37.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.+ ..++|+|+||+|||||++.|+|...+..|
T Consensus 18 ~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 60 (257)
T PRK10619 18 HEVLKGVSLQANAG--DVISIIGSSGSGKSTFLRCINFLEKPSEG 60 (257)
T ss_pred EEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCe
Confidence 34678899999988 99999999999999999999999876555
No 434
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=99.04 E-value=4e-09 Score=73.06 Aligned_cols=45 Identities=24% Similarity=0.250 Sum_probs=39.3
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 51 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~ 51 (174)
....++++|..+.+ .-+-++||+|||||||++.|.+...++.|..
T Consensus 15 ~~aL~~vs~~i~~G--ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i 59 (223)
T COG2884 15 REALRDVSFHIPKG--EFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59 (223)
T ss_pred chhhhCceEeecCc--eEEEEECCCCCCHHHHHHHHHhhhcCCCceE
Confidence 44678889999998 8999999999999999999999988877643
No 435
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=99.04 E-value=3.6e-09 Score=75.03 Aligned_cols=37 Identities=24% Similarity=0.182 Sum_probs=33.1
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
++++.+.+ .+++++|+||+|||||++.|+|...+..|
T Consensus 19 vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~~~G 55 (195)
T PRK13541 19 LSITFLPS--AITYIKGANGCGKSSLLRMIAGIMQPSSG 55 (195)
T ss_pred EEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 77888888 99999999999999999999998776665
No 436
>KOG2486 consensus Predicted GTPase [General function prediction only]
Probab=99.04 E-value=3.6e-09 Score=77.13 Aligned_cols=127 Identities=17% Similarity=0.142 Sum_probs=81.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC---ChHHHHH
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA---GSEFVGK 92 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~---~~~~~~~ 92 (174)
.+...++++.|.+++|||||+|.++...... .+....+.|...+... -...++++|.||+..+.- ...++..
T Consensus 133 k~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~----v~~~~~~vDlPG~~~a~y~~~~~~d~~~ 208 (320)
T KOG2486|consen 133 KDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFH----VGKSWYEVDLPGYGRAGYGFELPADWDK 208 (320)
T ss_pred CCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCccceeeeeee----ccceEEEEecCCcccccCCccCcchHhH
Confidence 4556889999999999999999998765321 2222333343333322 367799999999554322 2334444
Q ss_pred HHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 93 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....++.....-.. +++.+|++-++...|...++++-+.. -|..+|+||+|...+
T Consensus 209 ~t~~Y~leR~nLv~-~FLLvd~sv~i~~~D~~~i~~~ge~~-----VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 209 FTKSYLLERENLVR-VFLLVDASVPIQPTDNPEIAWLGENN-----VPMTSVFTKCDKQKK 263 (320)
T ss_pred hHHHHHHhhhhhhe-eeeeeeccCCCCCCChHHHHHHhhcC-----CCeEEeeehhhhhhh
Confidence 44444443333333 44556776577777777777777653 588999999998754
No 437
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=9.8e-10 Score=82.16 Aligned_cols=41 Identities=24% Similarity=0.259 Sum_probs=37.6
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+.+++++++..| ..++++|+||+|||||++.|+|...+..|
T Consensus 22 ~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 62 (279)
T PRK13650 22 TLNDVSFHVKQG--EWLSIIGHNGSGKSTTVRLIDGLLEAESG 62 (279)
T ss_pred eeeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 788999999998 99999999999999999999999877666
No 438
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=99.03 E-value=8.4e-10 Score=78.97 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=37.3
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++++.+ ..++++|++|+|||||++.|+|...+..|
T Consensus 22 ~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G 63 (207)
T cd03369 22 PVLKNVSFKVKAG--EKIGIVGRTGAGKSTLILALFRFLEAEEG 63 (207)
T ss_pred ccccCceEEECCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 4678889999988 99999999999999999999998766555
No 439
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=99.03 E-value=2.9e-09 Score=79.69 Aligned_cols=42 Identities=24% Similarity=0.281 Sum_probs=38.4
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++++.| ..++|+|+||+|||||++.|+|...+..|
T Consensus 24 ~vl~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 65 (280)
T PRK13633 24 LALDDVNLEVKKG--EFLVILGRNGSGKSTIAKHMNALLIPSEG 65 (280)
T ss_pred ceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4889999999998 99999999999999999999999877666
No 440
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=99.03 E-value=9e-09 Score=75.60 Aligned_cols=44 Identities=14% Similarity=0.176 Sum_probs=33.5
Q ss_pred cccccccCCCCC---CceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 7 IDDDWELTSPSN---GERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 7 ~~~~~~~~~~~~---~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
...++++...++ +..+++|+|+||+|||||++.|+|...+..|.
T Consensus 9 ~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~ 55 (246)
T cd03237 9 TLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGD 55 (246)
T ss_pred ccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCe
Confidence 344555555532 33899999999999999999999998766653
No 441
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.03 E-value=2.2e-09 Score=73.55 Aligned_cols=126 Identities=19% Similarity=0.137 Sum_probs=68.4
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.+..+.+++.+++ ..++++|+||+|||||++.|.|...+..|................+ .....++.+ +..
T Consensus 13 ~~l~~~~~~i~~g--~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~-~~~i~~~~q---lS~--- 83 (157)
T cd00267 13 TALDNVSLTLKAG--EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEEL-RRRIGYVPQ---LSG--- 83 (157)
T ss_pred eeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHH-HhceEEEee---CCH---
Confidence 3567778888888 9999999999999999999999875544321111100000000000 111223333 221
Q ss_pred ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHH-HHHHHHHhhhhcCcEEEEEeCc
Q 030624 86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l-~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
. .++....++....+++.+++ ...+..++......+ +.+.+.. .. ..++++++|.
T Consensus 84 --G--~~~r~~l~~~l~~~~~i~il-DEp~~~lD~~~~~~l~~~l~~~~-~~--~~tii~~sh~ 139 (157)
T cd00267 84 --G--QRQRVALARALLLNPDLLLL-DEPTSGLDPASRERLLELLRELA-EE--GRTVIIVTHD 139 (157)
T ss_pred --H--HHHHHHHHHHHhcCCCEEEE-eCCCcCCCHHHHHHHHHHHHHHH-HC--CCEEEEEeCC
Confidence 1 22333444455556665554 344447777775444 4444432 22 2577888774
No 442
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=99.02 E-value=2.9e-09 Score=76.53 Aligned_cols=42 Identities=26% Similarity=0.322 Sum_probs=37.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++++.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 13 ~~l~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G 54 (213)
T cd03235 13 PVLEDVSFEVKPG--EFLAIVGPNGAGKSTLLKAILGLLKPTSG 54 (213)
T ss_pred EeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHcCCCCCCCC
Confidence 4678889999998 99999999999999999999998776555
No 443
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.02 E-value=1.2e-09 Score=73.61 Aligned_cols=56 Identities=30% Similarity=0.457 Sum_probs=39.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFD 82 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 82 (174)
+++++|.+|+|||||+|+|++....... ...+.|... ..+.. +..++++||||+.-
T Consensus 85 ~~~~~G~~~vGKstlin~l~~~~~~~~~-~~~~~~~~~--~~~~~--~~~~~i~DtpG~~~ 140 (141)
T cd01857 85 TIGLVGYPNVGKSSLINALVGKKKVSVS-ATPGKTKHF--QTIFL--TPTITLCDCPGLVF 140 (141)
T ss_pred EEEEECCCCCCHHHHHHHHhCCCceeeC-CCCCcccce--EEEEe--CCCEEEEECCCcCC
Confidence 8999999999999999999987754322 223333332 22333 33689999999863
No 444
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.4e-09 Score=80.21 Aligned_cols=43 Identities=26% Similarity=0.318 Sum_probs=37.6
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++.+.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 15 ~~il~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 57 (255)
T PRK11231 15 KRILNDLSLSLPTG--KITALIGPNGCGKSTLLKCFARLLTPQSG 57 (255)
T ss_pred EEEEeeeeeEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCCc
Confidence 34678889999998 99999999999999999999998766555
No 445
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=2.1e-09 Score=79.33 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=37.4
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.+++++++..+ ..++++|+||+|||||++.|+|..++..|
T Consensus 19 ~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G 60 (255)
T PRK11300 19 LAVNNVNLEVREQ--EIVSLIGPNGAGKTTVFNCLTGFYKPTGG 60 (255)
T ss_pred EEEEeeeeEEcCC--eEEEEECCCCCCHHHHHHHHhCCcCCCcc
Confidence 4678889999988 99999999999999999999999776665
No 446
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.02 E-value=5.9e-09 Score=74.42 Aligned_cols=42 Identities=31% Similarity=0.376 Sum_probs=38.1
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++++.+ .+++++|+||+|||||++.|+|...+..|
T Consensus 19 ~il~~~s~~i~~G--~~~~i~G~nG~GKSTLl~~i~G~~~~~~G 60 (204)
T cd03250 19 FTLKDINLEVPKG--ELVAIVGPVGSGKSSLLSALLGELEKLSG 60 (204)
T ss_pred ceeeeeeEEECCC--CEEEEECCCCCCHHHHHHHHhCcCCCCCC
Confidence 4788999999999 99999999999999999999998776665
No 447
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=99.02 E-value=2.2e-09 Score=78.95 Aligned_cols=39 Identities=26% Similarity=0.287 Sum_probs=35.1
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
..+.++++++++.+ .+++++|+||+|||||++.|+|...
T Consensus 16 ~~~l~~is~~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 16 VEVLDGVNLEIPDN--TITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred eeeeecceeEEcCC--CEEEEECCCCCCHHHHHHHHhccCC
Confidence 34678889999988 9999999999999999999999864
No 448
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.02 E-value=1.6e-09 Score=80.87 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=37.9
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.+++++++..| .+++|+|+||+|||||++.|+|...+..|
T Consensus 19 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (274)
T PRK13647 19 KALKGLSLSIPEG--SKTALLGPNGAGKSTLLLHLNGIYLPQRG 60 (274)
T ss_pred eeeeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCce
Confidence 4788999999999 99999999999999999999998876655
No 449
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=99.02 E-value=1.7e-09 Score=87.09 Aligned_cols=44 Identities=23% Similarity=0.236 Sum_probs=38.4
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++|+...+ ..++++|+||||||||++.|+|...+..|.
T Consensus 17 ~~~l~~is~~i~~G--e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~ 60 (501)
T PRK10762 17 VKALSGAALNVYPG--RVMALVGENGAGKSTMMKVLTGIYTRDAGS 60 (501)
T ss_pred eEEeeeeeEEEcCC--eEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 34678899999998 999999999999999999999988766653
No 450
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=99.01 E-value=1.1e-09 Score=88.83 Aligned_cols=43 Identities=30% Similarity=0.325 Sum_probs=38.6
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| .+++++|++|+|||||++.|+|...+..|.
T Consensus 336 ~il~~i~l~i~~G--~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~ 378 (529)
T TIGR02857 336 PALRPVSFTVPPG--ERVALVGPSGAGKSTLLNLLLGFVDPTEGS 378 (529)
T ss_pred ccccceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 3788899999999 999999999999999999999998776663
No 451
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.01 E-value=1.8e-09 Score=86.80 Aligned_cols=53 Identities=21% Similarity=0.216 Sum_probs=41.3
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE 60 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~ 60 (174)
.+.++.+|....+ .+|+++|+||+|||||++.|+|...+..|....+.+....
T Consensus 336 ~l~~~~s~~i~~g--~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~v~ig 388 (530)
T COG0488 336 LLLKDLSFRIDRG--DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGETVKIG 388 (530)
T ss_pred eeecCceEEecCC--CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCceEEE
Confidence 4677888888888 9999999999999999999999876665544444443333
No 452
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.01 E-value=2.9e-09 Score=79.56 Aligned_cols=42 Identities=21% Similarity=0.287 Sum_probs=38.1
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+.+.| .+++|+|+||+|||||++.|+|...+..|
T Consensus 18 ~~l~~vsl~i~~G--e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G 59 (277)
T PRK13652 18 EALNNINFIAPRN--SRIAVIGPNGAGKSTLFRHFNGILKPTSG 59 (277)
T ss_pred ceeeEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCce
Confidence 3788999999998 99999999999999999999998877666
No 453
>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]
Probab=99.01 E-value=1.7e-09 Score=86.96 Aligned_cols=119 Identities=23% Similarity=0.254 Sum_probs=79.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCC---------------CCcceeeEEEEEEE----eCCcEEEEEeC
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASS---------------SGVTSTCEMQRTVL----KDGQVVNVIDT 77 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~---------------~~~t~~~~~~~~~~----~~~~~~~~iDt 77 (174)
+...+.++++|+-++|||+|+..|..+..+...... .+++....-..... .+.+.+.++||
T Consensus 125 p~~irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDT 204 (971)
T KOG0468|consen 125 PERIRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDT 204 (971)
T ss_pred cceEEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecC
Confidence 344578999999999999999999887654321100 12222222122221 12345799999
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 78 PGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 78 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
||.-.+. .+.. ..++.+|++++++|+.+++.....+.++...+.. .++++|+||+|.+
T Consensus 205 PGHVnF~-------DE~t----a~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~-----~~i~vviNKiDRL 262 (971)
T KOG0468|consen 205 PGHVNFS-------DETT----ASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNR-----LPIVVVINKVDRL 262 (971)
T ss_pred CCcccch-------HHHH----HHhhhcceEEEEEEcccCceeeHHHHHHHHHhcc-----CcEEEEEehhHHH
Confidence 9999832 3333 3445559999999998898888877765544432 5999999999985
No 454
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=99.00 E-value=1.3e-09 Score=89.39 Aligned_cols=43 Identities=28% Similarity=0.237 Sum_probs=38.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| .+++++|++|+|||||++.|+|...+..|.
T Consensus 349 ~iL~~inl~i~~G--~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~ 391 (588)
T PRK13657 349 QGVEDVSFEAKPG--QTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391 (588)
T ss_pred ceecceeEEECCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 4788899999999 999999999999999999999998776653
No 455
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=99.00 E-value=2.7e-09 Score=93.29 Aligned_cols=132 Identities=17% Similarity=0.221 Sum_probs=80.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccc---cC---CCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC----hHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSR---AS---SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG----SEFV 90 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~---~~---~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~----~~~~ 90 (174)
+..+++|++|+||||+++.- |...+-.. .. ..+.|.. +.|.-.....++||+|..-...+ ....
T Consensus 112 PWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-----c~wwf~~~avliDtaG~y~~~~~~~~~~~~~ 185 (1169)
T TIGR03348 112 PWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-----CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAA 185 (1169)
T ss_pred CCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-----cceEecCCEEEEcCCCccccCCCcccccHHH
Confidence 67899999999999999875 44432211 00 1122222 33334556789999997754322 2223
Q ss_pred HHHHHHHHHhc--cCCceEEEEEEeCCCCCC--HH--------HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624 91 GKEIVKCIGMA--KDGIHAVLVVFSVRSRFS--QE--------EEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL 158 (174)
Q Consensus 91 ~~~~~~~~~~~--~~~~~~il~v~~~~~~~~--~~--------~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~ 158 (174)
...+...++.. .+.+++||++++..+-+. .. -+..++.+.+.++.. -|+.+++||+|++.+ .
T Consensus 186 W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll~G----F 259 (1169)
T TIGR03348 186 WLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLLAG----F 259 (1169)
T ss_pred HHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhhcC----H
Confidence 34445544432 356899999999873332 21 144456666666555 599999999999854 4
Q ss_pred HHHhcc
Q 030624 159 EDYLGR 164 (174)
Q Consensus 159 ~~~~~~ 164 (174)
.+|...
T Consensus 260 ~~~f~~ 265 (1169)
T TIGR03348 260 EEFFAD 265 (1169)
T ss_pred HHHHHh
Confidence 555544
No 456
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=99.00 E-value=1.1e-08 Score=74.16 Aligned_cols=45 Identities=27% Similarity=0.288 Sum_probs=39.1
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
|...+.++++|+++.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 33 ~~~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~~G 77 (224)
T cd03220 33 GEFWALKDVSFEVPRG--ERIGLIGRNGAGKSTLLRLLAGIYPPDSG 77 (224)
T ss_pred CCeEEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3455788999999999 99999999999999999999998766555
No 457
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=99.00 E-value=2.3e-09 Score=77.43 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=38.1
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+++.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 18 ~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G 59 (221)
T cd03244 18 PVLKNISFSIKPG--EKVGIVGRTGSGKSSLLLALFRLVELSSG 59 (221)
T ss_pred ccccceEEEECCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCC
Confidence 4788999999999 99999999999999999999998776655
No 458
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=99.00 E-value=2.2e-09 Score=80.38 Aligned_cols=41 Identities=24% Similarity=0.321 Sum_probs=36.8
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 48 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~ 48 (174)
.+.++++++++.+ ..++|+|+||+|||||++.|+|...+..
T Consensus 21 ~~l~~v~l~i~~G--e~~~I~G~nGaGKSTLl~~l~G~~~p~~ 61 (282)
T PRK13640 21 PALNDISFSIPRG--SWTALIGHNGSGKSTISKLINGLLLPDD 61 (282)
T ss_pred cceeeEEEEEcCC--CEEEEECCCCCcHHHHHHHHhcccCCCC
Confidence 3788899999998 9999999999999999999999876544
No 459
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.00 E-value=6.1e-09 Score=75.97 Aligned_cols=41 Identities=27% Similarity=0.234 Sum_probs=36.8
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+.+++++++..+ .+++++|+||+|||||++.|+|...+..|
T Consensus 14 ~l~~is~~i~~G--e~~~i~G~nG~GKStLl~~l~G~~~p~~G 54 (235)
T cd03299 14 KLKNVSLEVERG--DYFVILGPTGSGKSVLLETIAGFIKPDSG 54 (235)
T ss_pred eeeeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 577889999988 99999999999999999999998776665
No 460
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=99.00 E-value=8.6e-10 Score=90.51 Aligned_cols=43 Identities=30% Similarity=0.469 Sum_probs=38.7
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| .+++++|++|+|||||++.|+|...+..|.
T Consensus 355 ~il~~i~l~i~~G--e~iaIvG~SGsGKSTLl~lL~gl~~p~~G~ 397 (592)
T PRK10790 355 LVLQNINLSVPSR--GFVALVGHTGSGKSTLASLLMGYYPLTEGE 397 (592)
T ss_pred ceeeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCce
Confidence 4788999999999 999999999999999999999998776653
No 461
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=98.99 E-value=2.8e-09 Score=76.52 Aligned_cols=41 Identities=24% Similarity=0.200 Sum_probs=37.9
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+.+|++|+...| .+++++|+||||||||++.|.|..+|+.|
T Consensus 42 aL~disf~i~~G--e~vGiiG~NGaGKSTLlkliaGi~~Pt~G 82 (249)
T COG1134 42 ALKDISFEIYKG--ERVGIIGHNGAGKSTLLKLIAGIYKPTSG 82 (249)
T ss_pred EecCceEEEeCC--CEEEEECCCCCcHHHHHHHHhCccCCCCc
Confidence 478899999999 99999999999999999999999987766
No 462
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=98.99 E-value=3.7e-09 Score=77.40 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=37.4
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.+++++++..+ ..++++|+||+|||||++.|+|...+..|
T Consensus 16 ~~l~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~p~~G 57 (242)
T TIGR03411 16 KALNDLSLYVDPG--ELRVIIGPNGAGKTTMMDVITGKTRPDEG 57 (242)
T ss_pred EEeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4678889999988 99999999999999999999998766665
No 463
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.99 E-value=2.1e-09 Score=78.29 Aligned_cols=42 Identities=36% Similarity=0.389 Sum_probs=37.9
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+.+.+ ..++++|+||+|||||++.|+|...+..|
T Consensus 16 ~~l~~i~~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 57 (234)
T cd03251 16 PVLRDISLDIPAG--ETVALVGPSGSGKSTLVNLIPRFYDVDSG 57 (234)
T ss_pred cceeeeeEEEcCC--CEEEEECCCCCCHHHHHHHHhccccCCCC
Confidence 4678899999998 99999999999999999999999876665
No 464
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.99 E-value=1.5e-09 Score=78.86 Aligned_cols=42 Identities=24% Similarity=0.292 Sum_probs=38.0
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++++.+ ..++++|+||+|||||+++|+|..++..|
T Consensus 17 ~~l~~isl~i~~G--~~~~i~G~nGsGKSTLl~~l~G~~~~~~G 58 (229)
T cd03254 17 PVLKDINFSIKPG--ETVAIVGPTGAGKTTLINLLMRFYDPQKG 58 (229)
T ss_pred ccccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 4788999999999 99999999999999999999999876665
No 465
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=98.99 E-value=2.9e-09 Score=74.18 Aligned_cols=34 Identities=32% Similarity=0.349 Sum_probs=31.1
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
+.++++|+++.+ .+++++|+||+|||||++.++.
T Consensus 10 ~l~~isl~i~~G--~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 10 NLQNLDVSIPLN--VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred eecceEEEEcCC--CEEEEECCCCCCHHHHHHHHhh
Confidence 467889999999 9999999999999999999873
No 466
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.99 E-value=3.2e-09 Score=79.35 Aligned_cols=41 Identities=22% Similarity=0.202 Sum_probs=37.6
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+.++++++...| ..++|+|+||+|||||++.|+|...+..|
T Consensus 22 ~l~~v~l~i~~G--e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G 62 (277)
T PRK13642 22 QLNGVSFSITKG--EWVSIIGQNGSGKSTTARLIDGLFEEFEG 62 (277)
T ss_pred eeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 688999999998 99999999999999999999999877665
No 467
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=98.99 E-value=4.2e-09 Score=77.10 Aligned_cols=37 Identities=27% Similarity=0.392 Sum_probs=33.9
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.+.++++++++.| ..++++|+||+|||||++.|+|..
T Consensus 14 ~~l~~isl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 14 EILKGVNLTVKKG--EIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred EEEeccceEEcCC--CEEEEECCCCCCHHHHHHHHhCCC
Confidence 4678889999998 999999999999999999999984
No 468
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=98.99 E-value=5.2e-09 Score=75.76 Aligned_cols=42 Identities=26% Similarity=0.272 Sum_probs=37.6
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.+++++++..+ ..++++|+||+|||||++.|+|...+..|
T Consensus 22 ~il~~vs~~i~~G--e~~~l~G~nGsGKSTLl~~i~G~~~~~~G 63 (224)
T TIGR02324 22 PVLKNVSLTVNAG--ECVALSGPSGAGKSTLLKSLYANYLPDSG 63 (224)
T ss_pred EEEecceEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCC
Confidence 4688899999998 99999999999999999999998766555
No 469
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.98 E-value=2e-09 Score=89.80 Aligned_cols=43 Identities=33% Similarity=0.365 Sum_probs=38.9
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| .+++++|++|||||||++.|+|...+..|.
T Consensus 467 ~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 509 (686)
T TIGR03797 467 LILDDVSLQIEPG--EFVAIVGPSGSGKSTLLRLLLGFETPESGS 509 (686)
T ss_pred cceeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 4788999999999 999999999999999999999998776663
No 470
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=98.98 E-value=2.1e-08 Score=74.43 Aligned_cols=41 Identities=32% Similarity=0.308 Sum_probs=36.7
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+.++++++++.| .+++++|+||+|||||++.|+|..++..|
T Consensus 39 il~~is~~i~~G--e~~~liG~NGsGKSTLlk~L~Gl~~p~~G 79 (264)
T PRK13546 39 ALDDISLKAYEG--DVIGLVGINGSGKSTLSNIIGGSLSPTVG 79 (264)
T ss_pred EEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCcCCCce
Confidence 567889999998 99999999999999999999998766555
No 471
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.98 E-value=4.2e-09 Score=78.92 Aligned_cols=43 Identities=16% Similarity=0.166 Sum_probs=38.4
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.+++++++..| ..++++|+||+|||||++.|+|...+..|
T Consensus 19 ~~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G 61 (283)
T PRK13636 19 THALKGININIKKG--EVTAILGGNGAGKSTLFQNLNGILKPSSG 61 (283)
T ss_pred CeeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCcc
Confidence 34788999999999 99999999999999999999998876655
No 472
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=98.98 E-value=2.5e-09 Score=86.14 Aligned_cols=43 Identities=21% Similarity=0.263 Sum_probs=38.1
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++|+.+.| ..++++|+||+|||||++.|+|...+..|.
T Consensus 18 ~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 60 (501)
T PRK11288 18 KALDDISFDCRAG--QVHALMGENGAGKSTLLKILSGNYQPDAGS 60 (501)
T ss_pred EEEeeeeEEEeCC--cEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 4678899999999 999999999999999999999987766553
No 473
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=98.98 E-value=9.9e-09 Score=74.63 Aligned_cols=37 Identities=35% Similarity=0.431 Sum_probs=33.6
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 46 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~ 46 (174)
.++++++++.+ ..++++|+||+|||||++.|+|...+
T Consensus 2 l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p 38 (230)
T TIGR02770 2 VQDLNLSLKRG--EVLALVGESGSGKSLTCLAILGLLPP 38 (230)
T ss_pred ccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 46788888888 99999999999999999999998765
No 474
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.98 E-value=2.2e-09 Score=73.41 Aligned_cols=56 Identities=29% Similarity=0.447 Sum_probs=39.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~ 80 (174)
..+++++|.+|+|||||+|+|++......+. ..+.|..... ... +..+.++||||+
T Consensus 100 ~~~~~~~G~~~~GKstlin~l~~~~~~~~~~-~~~~t~~~~~--~~~--~~~~~liDtPG~ 155 (155)
T cd01849 100 SITVGVIGYPNVGKSSVINALLNKLKLKVGN-VPGTTTSQQE--VKL--DNKIKLLDTPGI 155 (155)
T ss_pred CcEEEEEccCCCCHHHHHHHHHccccccccC-CCCcccceEE--EEe--cCCEEEEECCCC
Confidence 4889999999999999999999976433321 1233333322 222 356899999996
No 475
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.98 E-value=1.3e-09 Score=76.89 Aligned_cols=56 Identities=32% Similarity=0.423 Sum_probs=37.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccc------cc-CCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKS------RA-SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~------~~-~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~ 80 (174)
.+++++|.+|+|||||+|+|++...... .. ..++.|.. ...+.. +..+.++||||+
T Consensus 128 ~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~--~~~~~~--~~~~~~~DtPG~ 190 (190)
T cd01855 128 GDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLD--LIKIPL--GNGKKLYDTPGI 190 (190)
T ss_pred CcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeee--eEEEec--CCCCEEEeCcCC
Confidence 6899999999999999999998653211 11 22233333 233322 235799999996
No 476
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.97 E-value=5.2e-09 Score=78.54 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=45.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 87 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~ 87 (174)
..+++++|.+|+|||||+|+|++......+. .++.|.... .+.. +..+.++||||+..+....
T Consensus 121 ~~~~~~~G~pnvGKSsliN~l~~~~~~~~~~-~~g~T~~~~--~~~~--~~~~~l~DtPGi~~~~~~~ 183 (287)
T PRK09563 121 AIRAMIIGIPNVGKSTLINRLAGKKIAKTGN-RPGVTKAQQ--WIKL--GKGLELLDTPGILWPKLED 183 (287)
T ss_pred ceEEEEECCCCCCHHHHHHHHhcCCccccCC-CCCeEEEEE--EEEe--CCcEEEEECCCcCCCCCCc
Confidence 3789999999999999999999987544432 344454433 2222 4568999999998765433
No 477
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.97 E-value=1.5e-09 Score=88.90 Aligned_cols=43 Identities=28% Similarity=0.407 Sum_probs=38.6
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++.+++++.| .+++++|++|+|||||++.|+|...+..|.
T Consensus 357 ~il~~i~l~i~~G--~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~ 399 (582)
T PRK11176 357 PALRNINFKIPAG--KTVALVGRSGSGKSTIANLLTRFYDIDEGE 399 (582)
T ss_pred ccccCceEEeCCC--CEEEEECCCCCCHHHHHHHHHhccCCCCce
Confidence 4788899999999 999999999999999999999998776663
No 478
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.97 E-value=7.2e-10 Score=92.74 Aligned_cols=43 Identities=28% Similarity=0.383 Sum_probs=38.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| .+++++|++|||||||++.|+|...+..|.
T Consensus 493 ~vL~~isl~i~~G--e~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 535 (710)
T TIGR03796 493 PLIENFSLTLQPG--QRVALVGGSGSGKSTIAKLVAGLYQPWSGE 535 (710)
T ss_pred CcccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 4678889999999 999999999999999999999998776663
No 479
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.97 E-value=4.2e-09 Score=76.47 Aligned_cols=43 Identities=28% Similarity=0.261 Sum_probs=38.2
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++++.+ ..++++|+||||||||++.+.|..++..|.
T Consensus 18 ~~l~~v~~~i~~G--e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~ 60 (235)
T COG1122 18 AALKDVSLEIEKG--ERVLLIGPNGSGKSTLLKLLNGLLKPTSGE 60 (235)
T ss_pred eeeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHcCcCcCCCCE
Confidence 4667888999988 999999999999999999999998877664
No 480
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.97 E-value=1.7e-09 Score=87.85 Aligned_cols=134 Identities=19% Similarity=0.152 Sum_probs=81.5
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC--
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS-- 84 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~-- 84 (174)
|.++++|+.++| ..+++|||+|+||||+++.|.+.+.|.+|........-.+. ...|.......+-..|=+....
T Consensus 483 Vlk~lsfti~pG--e~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~-~~~~lr~~Ig~V~QEPvLFs~sI~ 559 (716)
T KOG0058|consen 483 VLKNLSFTIRPG--EVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDI-NHKYLRRKIGLVGQEPVLFSGSIR 559 (716)
T ss_pred hhcCceeeeCCC--CEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhc-CHHHHHHHeeeeeccceeecccHH
Confidence 678999999999 99999999999999999999999888777443322211111 1112123333444444332211
Q ss_pred ---------CChHHH----------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHH
Q 030624 85 ---------AGSEFV----------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 121 (174)
Q Consensus 85 ---------~~~~~~----------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~ 121 (174)
.+.+++ .++-+.++++..+++. |+++..+++-++.+
T Consensus 560 eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~-VLILDEATSALDae 638 (716)
T KOG0058|consen 560 ENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPR-VLILDEATSALDAE 638 (716)
T ss_pred HHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCC-EEEEechhhhcchh
Confidence 111111 3445556666666666 44456677688888
Q ss_pred HHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 122 EEAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 122 ~~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
.+..++...+.+.. .++++++.|
T Consensus 639 SE~lVq~aL~~~~~---~rTVlvIAH 661 (716)
T KOG0058|consen 639 SEYLVQEALDRLMQ---GRTVLVIAH 661 (716)
T ss_pred hHHHHHHHHHHhhc---CCeEEEEeh
Confidence 87776554443322 367777766
No 481
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.97 E-value=3.4e-10 Score=87.40 Aligned_cols=121 Identities=20% Similarity=0.216 Sum_probs=62.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccc----cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFK----SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~----~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
..+.++|.+|+|||||+|+|++..... .....++.|.. ...+.. .....++||||+.....-.+.+..+..+
T Consensus 155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~--~~~~~~--~~~~~l~DtPG~~~~~~~~~~l~~~~l~ 230 (360)
T TIGR03597 155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLD--LIEIPL--DDGHSLYDTPGIINSHQMAHYLDKKDLK 230 (360)
T ss_pred CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEee--EEEEEe--CCCCEEEECCCCCChhHhhhhcCHHHHh
Confidence 589999999999999999999854211 11122333333 222322 3446899999998742111212111111
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
.+. -..+.....+.++....+.......++.+... . ..+.+.+++.+..
T Consensus 231 ~~~-~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~---~--~~~~~~~~~~~~~ 279 (360)
T TIGR03597 231 YIT-PKKEIKPKTYQLNPNQTLFLGGLARFDYLKGE---K--TSFTFYVSNELNI 279 (360)
T ss_pred hcC-CCCccCceEEEeCCCCEEEEceEEEEEEecCC---c--eEEEEEccCCcee
Confidence 211 12345666776665433333333333323221 1 2445555555544
No 482
>PRK12288 GTPase RsgA; Reviewed
Probab=98.97 E-value=1.5e-09 Score=83.22 Aligned_cols=61 Identities=28% Similarity=0.455 Sum_probs=41.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----C--cceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
..++|+|.+|+|||||+|+|++......+.... + .|+.... +.+ .....++||||+.+...
T Consensus 206 ki~~~vG~sgVGKSTLiN~Ll~~~~~~t~~is~~~~rGrHTT~~~~l--~~l--~~~~~liDTPGir~~~l 272 (347)
T PRK12288 206 RISIFVGQSGVGKSSLINALLPEAEILVGDVSDNSGLGQHTTTAARL--YHF--PHGGDLIDSPGVREFGL 272 (347)
T ss_pred CCEEEECCCCCCHHHHHHHhccccceeeccccCcCCCCcCceeeEEE--EEe--cCCCEEEECCCCCcccC
Confidence 468999999999999999999877655543322 1 2222222 222 22346999999998655
No 483
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=98.97 E-value=9.4e-09 Score=74.53 Aligned_cols=39 Identities=28% Similarity=0.460 Sum_probs=35.5
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
..+.++++++...+ ..++++|+||+|||||++.|+|..+
T Consensus 20 ~~~l~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 20 ARILNDVSLHVESG--QVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred cccccCceEEEcCC--eEEEEECCCCCCHHHHHHHHhCccC
Confidence 35678889999998 9999999999999999999999876
No 484
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.97 E-value=1.5e-08 Score=74.88 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=38.2
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
...+.++++|+...+ ..++|+|+||+|||||++.|+|...+..|
T Consensus 22 ~~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~iaG~~~~~~G 65 (257)
T PRK14246 22 DKAILKDITIKIPNN--SIFGIMGPSGSGKSTLLKVLNRLIEIYDS 65 (257)
T ss_pred CceeEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCcC
Confidence 345678889999988 99999999999999999999998876554
No 485
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=98.97 E-value=9e-09 Score=76.55 Aligned_cols=43 Identities=28% Similarity=0.413 Sum_probs=38.2
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|++..+ .+++|+|+||+|||||++.|+|...+.+|
T Consensus 25 ~~il~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG 67 (268)
T PRK10419 25 QTVLNNVSLSLKSG--ETVALLGRSGCGKSTLARLLVGLESPSQG 67 (268)
T ss_pred eeeEeceeEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34788999999999 99999999999999999999998766555
No 486
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.97 E-value=3.4e-09 Score=85.52 Aligned_cols=40 Identities=25% Similarity=0.279 Sum_probs=36.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 46 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~ 46 (174)
..+.++++|++..+ ..++++|+||||||||++.|+|..++
T Consensus 18 ~~il~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~~ 57 (506)
T PRK13549 18 VKALDNVSLKVRAG--EIVSLCGENGAGKSTLMKVLSGVYPH 57 (506)
T ss_pred eEeecceeEEEeCC--eEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 34678899999998 99999999999999999999998764
No 487
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.96 E-value=2.5e-09 Score=77.96 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=38.1
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.+ ..++++|+||+|||||+++|+|..++..|
T Consensus 14 ~~~l~~i~~~i~~G--e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G 56 (236)
T cd03253 14 RPVLKDVSFTIPAG--KKVAIVGPSGSGKSTILRLLFRFYDVSSG 56 (236)
T ss_pred CceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcccCCCCC
Confidence 34778899999998 99999999999999999999998876665
No 488
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=98.96 E-value=4.8e-10 Score=78.56 Aligned_cols=42 Identities=26% Similarity=0.322 Sum_probs=37.1
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++.+.+ .+++++|+||+|||||++.|+|...+..|
T Consensus 13 ~~l~~~~~~i~~G--~~~~l~G~nGsGKStLl~~i~G~~~~~~G 54 (180)
T cd03214 13 TVLDDLSLSIEAG--EIVGILGPNGAGKSTLLKTLAGLLKPSSG 54 (180)
T ss_pred eeEeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 4678889999988 99999999999999999999998766555
No 489
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=98.96 E-value=3.2e-09 Score=77.02 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=34.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..+.+++++++..+ ..++++|+||+|||||++.|+|..
T Consensus 13 ~~~l~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 13 KHALKDISLDIPKG--EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred ceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 34678899999998 999999999999999999999987
No 490
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.96 E-value=8.3e-09 Score=76.07 Aligned_cols=40 Identities=23% Similarity=0.286 Sum_probs=35.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 46 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~ 46 (174)
..+.+++++++..| .+++++|+||+|||||++.|+|...+
T Consensus 17 ~~~l~~is~~i~~G--e~~~l~G~nGsGKSTLl~~l~G~~~~ 56 (253)
T PRK14267 17 NHVIKGVDLKIPQN--GVFALMGPSGCGKSTLLRTFNRLLEL 56 (253)
T ss_pred eeeeecceEEEcCC--CEEEEECCCCCCHHHHHHHHhccCCc
Confidence 35678899999998 99999999999999999999998754
No 491
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.96 E-value=1.5e-09 Score=90.75 Aligned_cols=43 Identities=21% Similarity=0.241 Sum_probs=38.8
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.++| .+++++|++|+|||||++.|+|...+..|.
T Consensus 495 ~vL~~isl~i~~G--e~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 537 (711)
T TIGR00958 495 PVLKGLTFTLHPG--EVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537 (711)
T ss_pred ccccCceEEEcCC--CEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 4788999999999 999999999999999999999998776663
No 492
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=98.96 E-value=3.6e-09 Score=85.05 Aligned_cols=43 Identities=23% Similarity=0.255 Sum_probs=38.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++|+.+.+ ..++++|+||||||||++.|+|...+..|
T Consensus 11 ~~il~~vs~~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 53 (491)
T PRK10982 11 VKALDNVNLKVRPH--SIHALMGENGAGKSTLLKCLFGIYQKDSG 53 (491)
T ss_pred EEeeeeeeEEEcCC--cEEEEECCCCCCHHHHHHHHcCCCCCCce
Confidence 34678899999999 99999999999999999999998766555
No 493
>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]
Probab=98.96 E-value=3.1e-10 Score=77.37 Aligned_cols=116 Identities=22% Similarity=0.158 Sum_probs=80.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE--EEE-EeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ--RTV-LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~--~~~-~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
..+++++|.-++||||+|...+... |..+.. .|....+. .+. ...+....+|||.|..+ +-.
T Consensus 20 aiK~vivGng~VGKssmiqryCkgi-fTkdyk---ktIgvdflerqi~v~~Edvr~mlWdtagqeE-----------fDa 84 (246)
T KOG4252|consen 20 AIKFVIVGNGSVGKSSMIQRYCKGI-FTKDYK---KTIGVDFLERQIKVLIEDVRSMLWDTAGQEE-----------FDA 84 (246)
T ss_pred hEEEEEECCCccchHHHHHHHhccc-cccccc---cccchhhhhHHHHhhHHHHHHHHHHhccchh-----------HHH
Confidence 4789999999999999999998654 222211 11111111 010 11234567899999887 555
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+.++.++++.+.++|++.+++.+.+. .+|-+.++...+. .|+++|-||+|+.++
T Consensus 85 ItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlved 139 (246)
T KOG4252|consen 85 ITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVED 139 (246)
T ss_pred HHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHh
Confidence 55678899999999999987766664 6777777766433 599999999999864
No 494
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=98.96 E-value=9.4e-09 Score=75.51 Aligned_cols=41 Identities=24% Similarity=0.313 Sum_probs=36.6
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 47 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~ 47 (174)
..+.++++++.+.| ..++++|+||+|||||++.|+|...+.
T Consensus 14 ~~~l~~vs~~i~~G--e~~~i~G~nGsGKSTLl~~l~G~~~p~ 54 (247)
T TIGR00972 14 KEALKNINLDIPKN--QVTALIGPSGCGKSTLLRSLNRMNDLV 54 (247)
T ss_pred eeeecceeEEECCC--CEEEEECCCCCCHHHHHHHHhccCCCC
Confidence 34678899999999 999999999999999999999987654
No 495
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.95 E-value=2e-09 Score=79.83 Aligned_cols=63 Identities=30% Similarity=0.357 Sum_probs=41.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----CcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.+.+++|++|+|||||+|+|........+..+. +.-+.+...-+.+ .....++|||||.+...
T Consensus 165 ~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l--~~gG~iiDTPGf~~~~l 231 (301)
T COG1162 165 KITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPL--PGGGWIIDTPGFRSLGL 231 (301)
T ss_pred CeEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEc--CCCCEEEeCCCCCccCc
Confidence 688999999999999999999855444442221 1111122222222 35678999999998554
No 496
>PRK14845 translation initiation factor IF-2; Provisional
Probab=98.95 E-value=1.3e-08 Score=87.15 Aligned_cols=120 Identities=17% Similarity=0.167 Sum_probs=78.5
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-----------------CcEEE
Q 030624 11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-----------------GQVVN 73 (174)
Q Consensus 11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----------------~~~~~ 73 (174)
|+++.+.-.-.-.+++++ ||||+.+|.+...... ...+.|.......+.+.. -..+.
T Consensus 456 ~~~~~~~~~~~~~~~~~~----KTtLLD~iR~t~v~~~--EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~ 529 (1049)
T PRK14845 456 YDLTTETHNFIANGILVH----NTTLLDKIRKTRVAKK--EAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLL 529 (1049)
T ss_pred EEEEeccCcceeeeeecc----cccHHHHHhCCCcccc--cCCCceeccceEEEEecccccccccccccccccCCcCcEE
Confidence 344444322233344433 9999999999887433 345555555444443311 01379
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 74 VIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 74 ~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
++||||+.++ ..........+|++++|+|+++++...+.+.++.+... . .|+++++||+|+..
T Consensus 530 fiDTPGhe~F-----------~~lr~~g~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~---~--iPiIVViNKiDL~~ 592 (1049)
T PRK14845 530 FIDTPGHEAF-----------TSLRKRGGSLADLAVLVVDINEGFKPQTIEAINILRQY---K--TPFVVAANKIDLIP 592 (1049)
T ss_pred EEECCCcHHH-----------HHHHHhhcccCCEEEEEEECcccCCHhHHHHHHHHHHc---C--CCEEEEEECCCCcc
Confidence 9999997652 22222345668999999999878888888887766653 2 58999999999864
No 497
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.95 E-value=8.6e-09 Score=77.39 Aligned_cols=42 Identities=26% Similarity=0.242 Sum_probs=38.2
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|++..| ..++|+|+||+|||||++.|+|...+..|
T Consensus 21 ~~l~~vs~~i~~G--e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G 62 (287)
T PRK13637 21 KALDNVNIEIEDG--EFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62 (287)
T ss_pred ceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCcc
Confidence 4788999999999 99999999999999999999998877665
No 498
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=98.95 E-value=1.8e-09 Score=88.22 Aligned_cols=43 Identities=19% Similarity=0.176 Sum_probs=38.3
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| .+++++|++|+|||||++.|+|...+..|.
T Consensus 329 ~~l~~i~~~i~~G--~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~ 371 (569)
T PRK10789 329 PALENVNFTLKPG--QMLGICGPTGSGKSTLLSLIQRHFDVSEGD 371 (569)
T ss_pred ccccCeeEEECCC--CEEEEECCCCCCHHHHHHHHhcccCCCCCE
Confidence 4678889999998 999999999999999999999998776663
No 499
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=98.95 E-value=3.9e-09 Score=83.44 Aligned_cols=43 Identities=26% Similarity=0.228 Sum_probs=38.7
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
...++++|+...+ ...+++|.||+|||||++.|+|...+++|.
T Consensus 22 ~AL~~v~l~v~~G--EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~ 64 (500)
T COG1129 22 KALDGVSLTVRPG--EVHALLGENGAGKSTLMKILSGVYPPDSGE 64 (500)
T ss_pred eeeccceeEEeCc--eEEEEecCCCCCHHHHHHHHhCcccCCCce
Confidence 4578889999999 999999999999999999999999887764
No 500
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.95 E-value=1.7e-08 Score=71.23 Aligned_cols=41 Identities=27% Similarity=0.371 Sum_probs=35.0
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
|...+.+++++.++.+ ...+++||+|||||||++++....-
T Consensus 18 g~~~aL~~i~l~i~~~--~VTAlIGPSGcGKST~LR~lNRmnd 58 (253)
T COG1117 18 GDKHALKDINLDIPKN--KVTALIGPSGCGKSTLLRCLNRMND 58 (253)
T ss_pred CchhhhccCceeccCC--ceEEEECCCCcCHHHHHHHHHhhcc
Confidence 4455678899999998 9999999999999999999877653
Done!