Query 030624
Match_columns 174
No_of_seqs 124 out of 1404
Neff 10.1
Searched_HMMs 29240
Date Tue Mar 26 03:06:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030624.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030624hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxx_A GTPase IMAP family memb 99.9 1.6E-24 5.6E-29 157.1 14.5 143 17-163 26-168 (239)
2 3lxw_A GTPase IMAP family memb 99.9 3.5E-23 1.2E-27 150.9 12.6 142 18-164 19-162 (247)
3 2xtp_A GTPase IMAP family memb 99.9 1.4E-21 4.9E-26 143.2 16.0 135 17-153 19-154 (260)
4 3def_A T7I23.11 protein; chlor 99.9 1.7E-20 5.7E-25 137.8 16.8 143 18-164 34-177 (262)
5 1h65_A Chloroplast outer envel 99.9 3.3E-20 1.1E-24 136.8 15.9 141 19-163 38-179 (270)
6 1wf3_A GTP-binding protein; GT 99.8 3.8E-19 1.3E-23 132.9 16.2 127 19-153 6-132 (301)
7 3iev_A GTP-binding protein ERA 99.8 2E-19 6.9E-24 134.9 14.0 129 15-151 5-135 (308)
8 4dhe_A Probable GTP-binding pr 99.8 6E-19 2.1E-23 126.0 13.8 132 17-153 26-159 (223)
9 1svi_A GTP-binding protein YSX 99.8 8.9E-18 3E-22 117.4 16.3 127 18-153 21-149 (195)
10 2gj8_A MNME, tRNA modification 99.8 2.4E-18 8.3E-23 118.6 12.7 126 20-152 4-129 (172)
11 2dyk_A GTP-binding protein; GT 99.8 4.7E-18 1.6E-22 115.1 13.0 122 21-153 2-123 (161)
12 1mky_A Probable GTP-binding pr 99.8 2.7E-18 9.1E-23 134.5 13.0 123 21-152 2-124 (439)
13 1ksh_A ARF-like protein 2; sma 99.8 8.5E-18 2.9E-22 116.8 13.5 118 18-153 16-134 (186)
14 2lkc_A Translation initiation 99.8 2.3E-18 7.9E-23 118.6 10.3 125 19-162 7-131 (178)
15 3pqc_A Probable GTP-binding pr 99.8 5.3E-17 1.8E-21 113.2 17.1 126 18-153 21-148 (195)
16 1z08_A RAS-related protein RAB 99.8 3.7E-18 1.3E-22 116.7 10.7 118 20-153 6-126 (170)
17 2efe_B Small GTP-binding prote 99.8 5.2E-18 1.8E-22 117.1 10.1 121 18-153 10-132 (181)
18 1z0f_A RAB14, member RAS oncog 99.8 2.7E-18 9.3E-23 118.2 8.6 120 19-153 14-135 (179)
19 3tw8_B RAS-related protein RAB 99.8 5.8E-18 2E-22 116.7 10.1 120 17-153 6-128 (181)
20 1z0j_A RAB-22, RAS-related pro 99.8 3.2E-18 1.1E-22 116.9 8.6 120 19-153 5-126 (170)
21 2bme_A RAB4A, RAS-related prot 99.8 2E-17 6.9E-22 114.7 12.7 119 18-152 8-129 (186)
22 2fg5_A RAB-22B, RAS-related pr 99.8 3.6E-18 1.2E-22 119.5 8.9 119 19-152 22-142 (192)
23 1ek0_A Protein (GTP-binding pr 99.8 2.9E-18 9.8E-23 117.0 8.1 118 20-153 3-123 (170)
24 1upt_A ARL1, ADP-ribosylation 99.8 1.4E-17 4.8E-22 113.8 11.6 116 20-153 7-123 (171)
25 1r2q_A RAS-related protein RAB 99.7 3.8E-18 1.3E-22 116.4 8.6 119 20-153 6-126 (170)
26 1zbd_A Rabphilin-3A; G protein 99.7 1.3E-17 4.3E-22 117.5 11.3 119 20-153 8-128 (203)
27 3tkl_A RAS-related protein RAB 99.7 1.7E-17 5.7E-22 116.1 11.7 121 18-154 14-137 (196)
28 2g6b_A RAS-related protein RAB 99.7 3E-17 1E-21 113.2 12.7 120 19-153 9-131 (180)
29 2qu8_A Putative nucleolar GTP- 99.7 7.5E-17 2.6E-21 115.8 15.1 131 18-153 27-157 (228)
30 1ega_A Protein (GTP-binding pr 99.7 1.4E-17 4.8E-22 124.5 11.6 123 19-152 7-130 (301)
31 3t5d_A Septin-7; GTP-binding p 99.7 4.3E-17 1.5E-21 120.3 14.1 130 18-153 6-159 (274)
32 2bcg_Y Protein YP2, GTP-bindin 99.7 9.7E-18 3.3E-22 118.4 10.1 119 19-153 7-128 (206)
33 4bas_A ADP-ribosylation factor 99.7 3.7E-17 1.3E-21 114.5 13.0 124 15-153 12-142 (199)
34 1r8s_A ADP-ribosylation factor 99.7 5.4E-17 1.8E-21 110.3 12.7 114 22-153 2-116 (164)
35 2il1_A RAB12; G-protein, GDP, 99.7 5.6E-18 1.9E-22 118.6 8.0 120 18-153 24-146 (192)
36 2gf9_A RAS-related protein RAB 99.7 1.1E-17 3.8E-22 116.6 9.3 119 20-153 22-142 (189)
37 2oil_A CATX-8, RAS-related pro 99.7 5.3E-18 1.8E-22 118.6 7.6 120 19-153 24-145 (193)
38 2hjg_A GTP-binding protein ENG 99.7 4.4E-18 1.5E-22 133.2 7.7 123 21-153 4-126 (436)
39 2hjg_A GTP-binding protein ENG 99.7 6.8E-18 2.3E-22 132.1 8.7 129 19-154 174-302 (436)
40 4dcu_A GTP-binding protein ENG 99.7 2.8E-18 9.5E-23 135.0 6.4 125 19-153 22-146 (456)
41 1wms_A RAB-9, RAB9, RAS-relate 99.7 4E-17 1.4E-21 112.3 11.5 120 19-152 6-130 (177)
42 2y8e_A RAB-protein 6, GH09086P 99.7 5.9E-18 2E-22 116.5 7.3 119 19-153 13-134 (179)
43 2p5s_A RAS and EF-hand domain 99.7 6.4E-18 2.2E-22 118.8 7.6 117 19-151 27-146 (199)
44 1ky3_A GTP-binding protein YPT 99.7 2E-17 6.7E-22 114.2 9.8 122 18-152 6-132 (182)
45 1z06_A RAS-related protein RAB 99.7 1.4E-17 4.7E-22 116.1 9.0 120 19-153 19-142 (189)
46 1u8z_A RAS-related protein RAL 99.7 6.4E-17 2.2E-21 110.0 12.0 119 19-153 3-124 (168)
47 3bc1_A RAS-related protein RAB 99.7 2.7E-17 9.3E-22 114.5 10.2 119 19-152 10-141 (195)
48 2h57_A ADP-ribosylation factor 99.7 4.8E-17 1.7E-21 113.4 11.4 120 19-153 20-141 (190)
49 1m2o_B GTP-binding protein SAR 99.7 7.6E-17 2.6E-21 112.7 12.4 125 8-153 14-139 (190)
50 1zd9_A ADP-ribosylation factor 99.7 6.2E-17 2.1E-21 112.8 11.9 117 20-153 22-139 (188)
51 2erx_A GTP-binding protein DI- 99.7 2.8E-17 9.7E-22 112.3 9.9 119 20-153 3-124 (172)
52 2ew1_A RAS-related protein RAB 99.7 2.8E-17 9.7E-22 116.0 10.1 117 20-152 26-145 (201)
53 2h17_A ADP-ribosylation factor 99.7 3E-17 1E-21 113.7 10.0 117 19-153 20-137 (181)
54 2a9k_A RAS-related protein RAL 99.7 8.1E-17 2.8E-21 111.5 12.1 121 17-153 15-138 (187)
55 4dcu_A GTP-binding protein ENG 99.7 2.2E-17 7.5E-22 129.9 10.2 131 18-159 193-327 (456)
56 2fu5_C RAS-related protein RAB 99.7 2.5E-17 8.6E-22 114.0 9.4 118 20-153 8-128 (183)
57 3t5g_A GTP-binding protein RHE 99.7 2.3E-17 7.8E-22 114.0 9.2 118 19-153 5-126 (181)
58 1f6b_A SAR1; gtpases, N-termin 99.7 2.7E-17 9.2E-22 115.7 9.5 136 7-163 15-152 (198)
59 3iby_A Ferrous iron transport 99.7 1.3E-16 4.3E-21 116.7 13.2 122 21-153 2-125 (256)
60 2fh5_B SR-beta, signal recogni 99.7 1.4E-16 4.9E-21 113.0 13.0 118 19-153 6-130 (214)
61 3t34_A Dynamin-related protein 99.7 2.3E-16 7.8E-21 120.7 14.9 131 21-154 35-219 (360)
62 1zj6_A ADP-ribosylation factor 99.7 1.1E-16 3.6E-21 111.4 11.8 117 19-153 15-132 (187)
63 1kao_A RAP2A; GTP-binding prot 99.7 1.3E-16 4.4E-21 108.4 12.0 118 20-153 3-123 (167)
64 1z2a_A RAS-related protein RAB 99.7 1.5E-17 5.2E-22 113.3 7.1 119 19-153 4-124 (168)
65 3clv_A RAB5 protein, putative; 99.7 4.7E-17 1.6E-21 114.1 9.8 113 20-150 7-159 (208)
66 2hxs_A RAB-26, RAS-related pro 99.7 6.9E-17 2.4E-21 111.2 10.4 121 19-152 5-129 (178)
67 1fzq_A ADP-ribosylation factor 99.7 1.8E-16 6E-21 110.0 12.5 118 18-153 14-132 (181)
68 2hup_A RAS-related protein RAB 99.7 3.5E-17 1.2E-21 115.4 9.0 117 20-152 29-148 (201)
69 3oes_A GTPase rhebl1; small GT 99.7 2.9E-17 1E-21 115.6 8.6 121 17-153 21-144 (201)
70 1moz_A ARL1, ADP-ribosylation 99.7 5.1E-17 1.8E-21 112.4 9.6 118 18-153 16-134 (183)
71 3i8s_A Ferrous iron transport 99.7 2.3E-16 8E-21 116.4 13.6 123 20-153 3-127 (274)
72 2a5j_A RAS-related protein RAB 99.7 1.4E-17 4.7E-22 116.4 6.7 117 20-152 21-140 (191)
73 1g16_A RAS-related protein SEC 99.7 1.1E-17 3.9E-22 114.1 5.9 118 20-152 3-122 (170)
74 2b6h_A ADP-ribosylation factor 99.7 1.4E-16 4.8E-21 111.5 11.6 118 18-153 27-145 (192)
75 2fn4_A P23, RAS-related protei 99.7 2.9E-17 9.9E-22 113.2 7.9 122 15-153 4-129 (181)
76 3kkq_A RAS-related protein M-R 99.7 3.2E-17 1.1E-21 113.5 8.1 122 15-153 13-138 (183)
77 3q72_A GTP-binding protein RAD 99.7 7E-17 2.4E-21 109.9 9.7 119 20-154 2-122 (166)
78 3cph_A RAS-related protein SEC 99.7 5E-17 1.7E-21 115.1 9.2 118 19-152 19-139 (213)
79 2bov_A RAla, RAS-related prote 99.7 2.2E-16 7.5E-21 111.1 12.4 121 17-153 11-134 (206)
80 4dkx_A RAS-related protein RAB 99.7 4.4E-17 1.5E-21 116.3 8.8 118 18-153 11-133 (216)
81 3r7w_A Gtpase1, GTP-binding pr 99.7 1.5E-16 5.1E-21 119.2 11.9 126 20-152 3-129 (307)
82 3dz8_A RAS-related protein RAB 99.7 9E-18 3.1E-22 117.3 4.9 119 20-153 23-143 (191)
83 1vg8_A RAS-related protein RAB 99.7 3.3E-17 1.1E-21 115.6 7.8 123 18-153 6-132 (207)
84 3gee_A MNME, tRNA modification 99.7 1.6E-16 5.4E-21 125.3 12.5 125 21-154 234-359 (476)
85 2nzj_A GTP-binding protein REM 99.7 2E-16 7E-21 108.4 11.5 121 19-153 3-126 (175)
86 3llu_A RAS-related GTP-binding 99.7 1E-16 3.5E-21 112.5 10.1 128 15-153 15-144 (196)
87 1c1y_A RAS-related protein RAP 99.7 5.8E-17 2E-21 110.3 8.6 118 20-153 3-123 (167)
88 3con_A GTPase NRAS; structural 99.7 4.5E-16 1.5E-20 108.4 13.3 123 14-152 15-140 (190)
89 2x77_A ADP-ribosylation factor 99.7 6E-17 2.1E-21 112.8 8.8 117 19-153 21-138 (189)
90 3reg_A RHO-like small GTPase; 99.7 1.3E-16 4.3E-21 111.6 10.4 115 19-152 22-141 (194)
91 2wji_A Ferrous iron transport 99.7 4.9E-16 1.7E-20 106.1 12.8 120 20-152 3-122 (165)
92 4djt_A GTP-binding nuclear pro 99.7 2.1E-17 7.2E-22 117.7 6.2 120 19-153 10-132 (218)
93 2q3h_A RAS homolog gene family 99.7 5.6E-17 1.9E-21 114.0 8.3 120 15-153 15-139 (201)
94 3cpj_B GTP-binding protein YPT 99.7 4.3E-17 1.5E-21 116.6 7.6 118 19-152 12-132 (223)
95 2o52_A RAS-related protein RAB 99.7 1.8E-17 6.1E-22 116.8 5.5 119 19-153 24-145 (200)
96 1x3s_A RAS-related protein RAB 99.7 1.4E-17 5E-22 116.2 4.9 122 18-153 13-136 (195)
97 2yc2_C IFT27, small RAB-relate 99.7 4.7E-17 1.6E-21 114.7 7.3 118 20-152 20-146 (208)
98 2gf0_A GTP-binding protein DI- 99.7 1.9E-16 6.4E-21 110.9 9.9 120 19-153 7-129 (199)
99 3k53_A Ferrous iron transport 99.7 3E-16 1E-20 115.6 11.3 120 20-151 3-122 (271)
100 3a1s_A Iron(II) transport prot 99.7 9.7E-16 3.3E-20 112.1 13.8 120 20-152 5-124 (258)
101 2fv8_A H6, RHO-related GTP-bin 99.7 1.1E-16 3.6E-21 113.3 8.3 117 18-153 23-144 (207)
102 4dsu_A GTPase KRAS, isoform 2B 99.7 3E-16 1E-20 108.9 10.5 118 20-153 4-124 (189)
103 1lnz_A SPO0B-associated GTP-bi 99.7 6.9E-17 2.4E-21 122.5 7.5 126 22-153 160-289 (342)
104 3q85_A GTP-binding protein REM 99.7 1.2E-16 4.1E-21 109.1 7.9 119 21-153 3-124 (169)
105 3geh_A MNME, tRNA modification 99.7 8.8E-17 3E-21 126.3 8.2 121 21-153 225-345 (462)
106 2atx_A Small GTP binding prote 99.7 3.3E-16 1.1E-20 109.4 10.3 117 19-153 17-137 (194)
107 3t1o_A Gliding protein MGLA; G 99.7 5.4E-16 1.9E-20 108.2 11.3 135 19-164 13-162 (198)
108 1jwy_B Dynamin A GTPase domain 99.7 3.5E-16 1.2E-20 117.4 10.9 138 20-163 24-222 (315)
109 2ce2_X GTPase HRAS; signaling 99.7 3.4E-16 1.2E-20 106.1 9.9 118 20-153 3-123 (166)
110 1mh1_A RAC1; GTP-binding, GTPa 99.7 2.5E-16 8.4E-21 109.0 9.2 117 19-153 4-124 (186)
111 3cbq_A GTP-binding protein REM 99.7 2.5E-16 8.7E-21 110.5 9.3 124 16-153 19-145 (195)
112 1mky_A Probable GTP-binding pr 99.7 2.3E-16 7.8E-21 123.6 10.0 127 20-154 180-308 (439)
113 3p26_A Elongation factor 1 alp 99.7 4.6E-16 1.6E-20 123.2 11.7 120 19-154 32-187 (483)
114 2j1l_A RHO-related GTP-binding 99.7 7.8E-16 2.7E-20 109.4 11.8 117 19-153 33-153 (214)
115 3qq5_A Small GTP-binding prote 99.7 1.8E-16 6.2E-21 123.1 9.0 127 16-154 30-156 (423)
116 4a9a_A Ribosome-interacting GT 99.7 7E-16 2.4E-20 118.0 12.0 124 18-151 70-195 (376)
117 4gzl_A RAS-related C3 botulinu 99.7 4.3E-16 1.5E-20 110.0 9.9 118 18-153 28-149 (204)
118 2f7s_A C25KG, RAS-related prot 99.7 6.6E-17 2.3E-21 115.0 5.7 117 20-153 25-156 (217)
119 2gco_A H9, RHO-related GTP-bin 99.7 4.6E-16 1.6E-20 109.5 9.8 117 19-153 24-144 (201)
120 2wjg_A FEOB, ferrous iron tran 99.7 3.7E-15 1.3E-19 103.5 14.1 122 18-152 5-126 (188)
121 3q3j_B RHO-related GTP-binding 99.7 3.7E-16 1.3E-20 111.2 9.1 117 18-152 25-145 (214)
122 1m7b_A RND3/RHOE small GTP-bin 99.7 2.7E-16 9.3E-21 109.1 8.0 116 19-152 6-125 (184)
123 3gj0_A GTP-binding nuclear pro 99.7 5.7E-17 1.9E-21 115.7 4.5 122 17-153 12-134 (221)
124 3tr5_A RF-3, peptide chain rel 99.7 3.9E-16 1.3E-20 124.5 9.6 119 19-154 12-150 (528)
125 1wb1_A Translation elongation 99.7 7E-16 2.4E-20 122.0 10.9 119 18-153 17-140 (482)
126 1gwn_A RHO-related GTP-binding 99.7 2.3E-16 7.8E-21 111.6 7.4 122 13-152 21-146 (205)
127 3o47_A ADP-ribosylation factor 99.7 1.4E-15 4.8E-20 115.0 12.0 116 20-153 165-281 (329)
128 3j2k_7 ERF3, eukaryotic polype 99.7 1.8E-15 6.1E-20 118.5 13.0 120 17-152 14-169 (439)
129 2atv_A RERG, RAS-like estrogen 99.6 9.6E-16 3.3E-20 107.4 10.1 118 18-153 26-147 (196)
130 3l0i_B RAS-related protein RAB 99.6 8.1E-18 2.8E-22 118.3 -1.0 120 18-153 31-153 (199)
131 2qpt_A EH domain-containing pr 99.6 3.2E-16 1.1E-20 125.6 8.1 134 19-162 64-240 (550)
132 3bwd_D RAC-like GTP-binding pr 99.6 1.8E-16 6E-21 109.5 5.7 117 19-153 7-127 (182)
133 2e87_A Hypothetical protein PH 99.6 1.1E-14 3.7E-19 111.2 16.2 127 19-153 166-295 (357)
134 2ged_A SR-beta, signal recogni 99.6 7.7E-16 2.6E-20 107.4 8.6 121 19-153 47-171 (193)
135 1nrj_B SR-beta, signal recogni 99.6 1.3E-15 4.5E-20 108.3 9.7 122 18-154 10-136 (218)
136 2aka_B Dynamin-1; fusion prote 99.6 4.8E-15 1.7E-19 110.2 13.1 139 19-163 25-216 (299)
137 1zun_B Sulfate adenylate trans 99.6 5.8E-15 2E-19 115.5 14.1 119 19-153 23-172 (434)
138 1d2e_A Elongation factor TU (E 99.6 1.8E-15 6.1E-20 117.1 11.0 116 20-152 3-133 (397)
139 3c5c_A RAS-like protein 12; GD 99.6 2.9E-15 9.9E-20 104.3 11.0 117 19-152 20-141 (187)
140 3izq_1 HBS1P, elongation facto 99.6 3.5E-15 1.2E-19 120.9 13.0 119 19-153 166-320 (611)
141 3lvq_E ARF-GAP with SH3 domain 99.6 4.1E-15 1.4E-19 118.1 13.1 117 19-153 321-438 (497)
142 2iwr_A Centaurin gamma 1; ANK 99.6 1.5E-15 5.3E-20 104.5 9.3 112 19-151 6-121 (178)
143 2h5e_A Peptide chain release f 99.6 2.4E-15 8.3E-20 120.0 11.6 119 19-154 12-150 (529)
144 3b1v_A Ferrous iron uptake tra 99.6 3.3E-15 1.1E-19 110.0 11.2 119 20-152 3-121 (272)
145 2c78_A Elongation factor TU-A; 99.6 1.2E-15 4.3E-20 118.3 9.3 117 19-152 10-142 (405)
146 1xzp_A Probable tRNA modificat 99.6 1.3E-15 4.4E-20 120.2 9.3 120 21-153 244-365 (482)
147 2j0v_A RAC-like GTP-binding pr 99.6 8E-16 2.7E-20 109.0 7.2 117 19-153 8-128 (212)
148 3vqt_A RF-3, peptide chain rel 99.6 8.6E-15 2.9E-19 117.3 13.9 120 19-155 30-169 (548)
149 1pui_A ENGB, probable GTP-bind 99.6 1.7E-14 5.7E-19 101.9 13.7 129 13-153 21-152 (210)
150 2xex_A Elongation factor G; GT 99.6 2.9E-15 9.9E-20 123.1 10.7 121 17-154 7-143 (693)
151 1s0u_A EIF-2-gamma, translatio 99.6 2.1E-14 7.2E-19 111.5 15.1 121 19-154 7-151 (408)
152 3sjy_A Translation initiation 99.6 3.3E-15 1.1E-19 115.8 10.4 120 18-153 6-144 (403)
153 2cxx_A Probable GTP-binding pr 99.6 8.8E-15 3E-19 101.5 11.5 134 21-163 2-147 (190)
154 2qtf_A Protein HFLX, GTP-bindi 99.6 1.1E-14 3.6E-19 111.4 12.9 125 21-153 180-307 (364)
155 1jny_A EF-1-alpha, elongation 99.6 4.2E-15 1.4E-19 116.3 10.9 118 19-152 5-158 (435)
156 1dar_A EF-G, elongation factor 99.6 7.9E-15 2.7E-19 120.4 12.9 127 15-158 7-149 (691)
157 3ihw_A Centg3; RAS, centaurin, 99.6 1E-14 3.5E-19 101.3 11.5 114 16-151 16-132 (184)
158 1f60_A Elongation factor EEF1A 99.6 1.9E-15 6.4E-20 118.9 8.6 118 19-152 6-159 (458)
159 2qag_A Septin-2, protein NEDD5 99.6 1.1E-14 3.8E-19 111.3 12.4 128 20-153 37-189 (361)
160 2zej_A Dardarin, leucine-rich 99.6 1.9E-15 6.6E-20 104.9 7.4 117 21-153 3-127 (184)
161 1kk1_A EIF2gamma; initiation o 99.6 1.3E-14 4.3E-19 112.8 12.7 120 19-153 9-152 (410)
162 2elf_A Protein translation elo 99.6 3.3E-15 1.1E-19 114.5 8.9 102 21-150 22-125 (370)
163 3izy_P Translation initiation 99.6 4.8E-17 1.7E-21 129.5 -2.0 116 20-153 4-119 (537)
164 2x2e_A Dynamin-1; nitration, h 99.6 2.8E-14 9.7E-19 108.8 13.3 139 20-163 31-221 (353)
165 2rdo_7 EF-G, elongation factor 99.6 5.2E-14 1.8E-18 115.8 14.5 120 18-154 8-150 (704)
166 2f9l_A RAB11B, member RAS onco 99.6 3.9E-15 1.3E-19 104.6 6.8 117 20-152 5-124 (199)
167 1zo1_I IF2, translation initia 99.6 2.6E-16 8.8E-21 124.4 0.8 116 19-153 3-118 (501)
168 3zvr_A Dynamin-1; hydrolase, D 99.6 3.9E-14 1.3E-18 116.5 13.5 130 20-154 51-233 (772)
169 3th5_A RAS-related C3 botulinu 99.3 3.3E-16 1.1E-20 110.4 0.0 119 18-153 28-149 (204)
170 2g3y_A GTP-binding protein GEM 99.6 8E-14 2.7E-18 99.0 12.3 120 19-152 36-159 (211)
171 3cb4_D GTP-binding protein LEP 99.5 1.7E-14 5.8E-19 116.4 9.6 119 20-154 4-139 (599)
172 2qag_B Septin-6, protein NEDD5 99.5 4.6E-14 1.6E-18 109.3 11.5 140 8-153 30-191 (427)
173 1udx_A The GTP-binding protein 99.5 3.1E-14 1E-18 110.4 10.5 136 9-153 148-284 (416)
174 2ywe_A GTP-binding protein LEP 99.5 3.3E-14 1.1E-18 114.7 11.0 119 20-154 6-141 (600)
175 3sop_A Neuronal-specific septi 99.5 4.9E-14 1.7E-18 103.7 11.0 127 21-153 3-155 (270)
176 2dy1_A Elongation factor G; tr 99.5 5.7E-14 2E-18 115.0 12.5 115 20-151 9-139 (665)
177 2j69_A Bacterial dynamin-like 99.5 2E-14 6.8E-19 118.2 9.4 120 20-153 69-245 (695)
178 1oix_A RAS-related protein RAB 99.5 4.8E-14 1.6E-18 98.5 9.3 117 20-152 29-148 (191)
179 1g7s_A Translation initiation 99.5 1.5E-14 5E-19 116.8 7.5 115 20-152 5-136 (594)
180 2wkq_A NPH1-1, RAS-related C3 99.5 4.2E-14 1.4E-18 106.4 9.4 115 21-153 156-274 (332)
181 3avx_A Elongation factor TS, e 99.5 6.2E-14 2.1E-18 119.0 11.3 119 18-153 294-427 (1289)
182 3r7w_B Gtpase2, GTP-binding pr 99.5 6.2E-14 2.1E-18 105.1 10.0 121 22-153 1-121 (331)
183 2qag_C Septin-7; cell cycle, c 99.5 1.8E-13 6.2E-18 106.2 12.9 128 20-153 31-182 (418)
184 1r5b_A Eukaryotic peptide chai 99.5 4.2E-14 1.4E-18 111.5 9.1 118 19-152 42-195 (467)
185 1wxq_A GTP-binding protein; st 99.5 2.2E-13 7.4E-18 105.3 12.1 90 22-117 2-114 (397)
186 3mca_A HBS1, elongation factor 99.5 1.4E-15 4.7E-20 122.9 -0.4 119 19-153 176-330 (592)
187 3dpu_A RAB family protein; roc 99.5 5.1E-14 1.7E-18 112.8 7.1 121 18-154 39-166 (535)
188 4fn5_A EF-G 1, elongation fact 99.5 1.3E-12 4.4E-17 107.7 15.1 121 18-154 11-153 (709)
189 1n0u_A EF-2, elongation factor 99.5 1.2E-13 4.1E-18 115.6 8.7 117 19-151 18-163 (842)
190 2cjw_A GTP-binding protein GEM 99.5 1.3E-13 4.5E-18 96.3 7.2 119 20-152 6-128 (192)
191 3j25_A Tetracycline resistance 99.5 5.9E-14 2E-18 114.4 5.8 118 21-155 3-136 (638)
192 2qnr_A Septin-2, protein NEDD5 99.4 5E-12 1.7E-16 94.4 11.4 128 20-153 18-170 (301)
193 3szr_A Interferon-induced GTP- 99.3 2E-11 6.7E-16 99.1 11.0 128 22-153 47-229 (608)
194 3fvq_A Fe(3+) IONS import ATP- 99.3 1.1E-11 3.9E-16 94.1 8.6 139 4-147 16-197 (359)
195 3rlf_A Maltose/maltodextrin im 99.3 8.2E-12 2.8E-16 95.6 7.1 136 4-147 15-192 (381)
196 4g1u_C Hemin import ATP-bindin 99.3 2.1E-12 7.1E-17 94.8 3.6 44 4-49 23-66 (266)
197 1vpl_A ABC transporter, ATP-bi 99.3 7E-12 2.4E-16 91.4 6.4 44 5-50 28-71 (256)
198 3c5h_A Glucocorticoid receptor 99.3 3.1E-12 1E-16 93.3 4.1 49 104-153 162-213 (255)
199 3tui_C Methionine import ATP-b 99.3 1E-11 3.5E-16 94.5 7.0 135 7-147 43-222 (366)
200 3h2y_A GTPase family protein; 99.2 1.8E-13 6.3E-18 104.8 -3.0 123 21-153 161-288 (368)
201 3tif_A Uncharacterized ABC tra 99.2 6.3E-12 2.2E-16 90.6 5.2 42 7-50 20-61 (235)
202 1z47_A CYSA, putative ABC-tran 99.2 2.1E-11 7.3E-16 92.6 8.0 45 4-50 27-71 (355)
203 3ec1_A YQEH GTPase; atnos1, at 99.2 9.2E-14 3.1E-18 106.5 -5.3 133 21-164 163-301 (369)
204 2yyz_A Sugar ABC transporter, 99.2 2.9E-11 9.9E-16 92.0 8.4 43 6-50 17-59 (359)
205 1jal_A YCHF protein; nucleotid 99.2 8.1E-12 2.8E-16 95.1 5.3 90 21-116 3-108 (363)
206 1g29_1 MALK, maltose transport 99.2 4.7E-11 1.6E-15 91.4 9.3 43 6-50 17-59 (372)
207 2pcj_A ABC transporter, lipopr 99.2 5.8E-11 2E-15 85.0 9.0 43 6-50 18-60 (224)
208 2it1_A 362AA long hypothetical 99.2 3.3E-11 1.1E-15 91.8 8.1 44 5-50 16-59 (362)
209 1tq4_A IIGP1, interferon-induc 99.2 3E-11 1E-15 93.5 7.8 117 22-151 71-188 (413)
210 2ohf_A Protein OLA1, GTP-bindi 99.2 2.3E-11 8E-16 93.4 6.8 90 20-115 22-127 (396)
211 1ji0_A ABC transporter; ATP bi 99.2 1.6E-11 5.5E-16 88.8 5.5 43 6-50 20-62 (240)
212 1oxx_K GLCV, glucose, ABC tran 99.2 3.7E-11 1.3E-15 91.4 7.6 42 7-50 20-61 (353)
213 2nq2_C Hypothetical ABC transp 99.2 1.1E-10 3.7E-15 85.0 9.6 43 5-49 18-60 (253)
214 2olj_A Amino acid ABC transpor 99.2 2E-11 6.8E-16 89.4 5.7 44 5-50 37-80 (263)
215 3gfo_A Cobalt import ATP-bindi 99.2 1.3E-11 4.3E-16 91.0 4.5 42 7-50 23-64 (275)
216 1v43_A Sugar-binding transport 99.2 4.1E-11 1.4E-15 91.6 7.2 43 6-50 25-67 (372)
217 2qm8_A GTPase/ATPase; G protei 99.2 3.8E-12 1.3E-16 96.4 1.4 35 7-43 44-78 (337)
218 2j37_W Signal recognition part 99.2 5.8E-10 2E-14 88.3 13.7 123 18-153 99-255 (504)
219 1ni3_A YCHF GTPase, YCHF GTP-b 99.2 6.9E-11 2.4E-15 90.9 8.1 90 20-115 20-126 (392)
220 2dby_A GTP-binding protein; GD 99.2 5.4E-11 1.9E-15 90.9 7.3 90 21-116 2-111 (368)
221 2p67_A LAO/AO transport system 99.2 6.4E-11 2.2E-15 89.8 7.2 33 9-43 47-79 (341)
222 1sgw_A Putative ABC transporte 99.1 8.3E-11 2.8E-15 83.6 7.1 43 6-50 23-65 (214)
223 3d31_A Sulfate/molybdate ABC t 99.1 5.8E-11 2E-15 90.1 6.3 42 7-50 15-56 (348)
224 3nh6_A ATP-binding cassette SU 99.1 1.8E-11 6.2E-16 91.3 3.0 43 6-50 68-110 (306)
225 2ixe_A Antigen peptide transpo 99.1 6.5E-11 2.2E-15 87.0 5.3 44 5-50 32-75 (271)
226 2ff7_A Alpha-hemolysin translo 99.1 4.9E-11 1.7E-15 86.6 4.3 44 5-50 22-65 (247)
227 1mv5_A LMRA, multidrug resista 99.1 4.5E-11 1.6E-15 86.6 3.9 44 5-50 15-58 (243)
228 2pze_A Cystic fibrosis transme 99.1 3.1E-10 1.1E-14 81.5 8.1 43 5-49 21-63 (229)
229 2www_A Methylmalonic aciduria 99.1 1.2E-10 4.1E-15 88.6 6.1 24 20-43 74-97 (349)
230 1b0u_A Histidine permease; ABC 99.1 3E-10 1E-14 83.1 7.0 44 5-50 19-62 (262)
231 2qi9_C Vitamin B12 import ATP- 99.1 4.7E-11 1.6E-15 86.7 2.4 41 7-50 15-55 (249)
232 3p32_A Probable GTPase RV1496/ 99.0 3.9E-10 1.3E-14 85.9 7.2 25 18-42 77-101 (355)
233 2onk_A Molybdate/tungstate ABC 99.0 1.8E-10 6E-15 83.3 4.9 41 7-50 14-54 (240)
234 1f5n_A Interferon-induced guan 99.0 7E-10 2.4E-14 89.3 8.7 109 18-132 36-148 (592)
235 1g6h_A High-affinity branched- 99.0 1.2E-10 4.2E-15 84.9 3.6 44 5-50 20-63 (257)
236 2yhs_A FTSY, cell division pro 99.0 7.6E-10 2.6E-14 87.1 8.2 142 8-162 283-461 (503)
237 1yrb_A ATP(GTP)binding protein 99.0 1.7E-09 5.9E-14 78.7 9.7 77 70-153 109-186 (262)
238 2ihy_A ABC transporter, ATP-bi 99.0 8.9E-11 3.1E-15 86.6 2.7 44 5-50 34-77 (279)
239 3b9q_A Chloroplast SRP recepto 99.0 1.2E-09 4.2E-14 81.4 8.5 133 9-153 91-261 (302)
240 1puj_A YLQF, conserved hypothe 99.0 1.2E-09 4.1E-14 80.7 8.1 63 20-87 120-182 (282)
241 4a82_A Cystic fibrosis transme 99.0 2.1E-10 7.1E-15 92.7 3.9 43 6-50 355-397 (578)
242 2ghi_A Transport protein; mult 99.0 4.2E-10 1.4E-14 82.3 5.2 39 6-46 34-72 (260)
243 3b5x_A Lipid A export ATP-bind 99.0 1.4E-09 4.8E-14 88.0 8.7 44 5-50 356-399 (582)
244 2og2_A Putative signal recogni 99.0 3.2E-09 1.1E-13 80.8 9.7 132 10-153 149-318 (359)
245 2yz2_A Putative ABC transporte 99.0 1.4E-09 4.7E-14 79.8 7.3 43 6-50 21-63 (266)
246 3qf4_A ABC transporter, ATP-bi 99.0 4E-10 1.4E-14 91.2 4.8 43 6-50 357-399 (587)
247 3qf4_B Uncharacterized ABC tra 99.0 5.7E-10 1.9E-14 90.5 5.5 43 6-50 369-411 (598)
248 2pjz_A Hypothetical protein ST 98.9 1.2E-09 4.1E-14 79.9 5.9 41 6-50 19-59 (263)
249 2d2e_A SUFC protein; ABC-ATPas 98.9 1.9E-10 6.4E-15 83.6 1.6 43 5-49 16-60 (250)
250 1rj9_A FTSY, signal recognitio 98.9 7E-09 2.4E-13 77.4 9.7 128 19-153 101-262 (304)
251 2zu0_C Probable ATP-dependent 98.9 5.3E-10 1.8E-14 82.0 3.1 36 6-43 34-69 (267)
252 3dm5_A SRP54, signal recogniti 98.9 1.7E-08 6E-13 78.6 10.9 123 19-153 99-254 (443)
253 3gd7_A Fusion complex of cysti 98.9 3.1E-10 1.1E-14 87.3 1.1 43 4-49 33-75 (390)
254 4f4c_A Multidrug resistance pr 98.9 2.4E-09 8.3E-14 93.6 6.3 43 6-50 1093-1135(1321)
255 3b60_A Lipid A export ATP-bind 98.9 1.4E-09 4.9E-14 87.9 4.5 44 5-50 356-399 (582)
256 3e70_C DPA, signal recognition 98.8 2.5E-09 8.6E-14 80.5 4.7 123 19-153 128-283 (328)
257 3g5u_A MCG1178, multidrug resi 98.8 2.4E-09 8.4E-14 93.4 5.1 43 6-50 404-446 (1284)
258 2yl4_A ATP-binding cassette SU 98.8 1.8E-09 6.3E-14 87.5 3.9 42 7-50 359-400 (595)
259 3cnl_A YLQF, putative uncharac 98.8 4.7E-09 1.6E-13 76.8 5.3 60 21-85 100-159 (262)
260 4f4c_A Multidrug resistance pr 98.8 1.7E-09 5.8E-14 94.6 3.2 43 6-50 432-474 (1321)
261 3bk7_A ABC transporter ATP-bin 98.8 7.6E-08 2.6E-12 78.1 12.6 36 14-51 378-413 (607)
262 3kl4_A SRP54, signal recogniti 98.8 9.8E-09 3.4E-13 79.9 6.1 125 19-153 96-253 (433)
263 1yqt_A RNAse L inhibitor; ATP- 98.8 1.2E-07 4.2E-12 75.9 12.6 35 15-51 309-343 (538)
264 2cbz_A Multidrug resistance-as 98.8 3.9E-09 1.3E-13 76.1 3.3 43 5-49 18-60 (237)
265 4fid_A G protein alpha subunit 98.8 6.2E-08 2.1E-12 73.2 10.0 81 60-152 152-242 (340)
266 3ohm_A Guanine nucleotide-bind 98.7 3.6E-08 1.2E-12 74.1 8.6 82 59-152 157-248 (327)
267 2v3c_C SRP54, signal recogniti 98.7 1.6E-08 5.4E-13 78.9 6.5 124 18-153 97-253 (432)
268 3ozx_A RNAse L inhibitor; ATP 98.7 9.7E-08 3.3E-12 76.4 11.2 36 13-50 289-324 (538)
269 1t9h_A YLOQ, probable GTPase E 98.7 3.5E-09 1.2E-13 79.0 2.2 58 21-83 174-237 (307)
270 2wsm_A Hydrogenase expression/ 98.7 1.7E-08 5.7E-13 71.5 5.5 24 20-43 30-53 (221)
271 1cip_A Protein (guanine nucleo 98.7 5.4E-08 1.8E-12 74.0 8.0 80 60-151 184-273 (353)
272 1j8m_F SRP54, signal recogniti 98.7 2.7E-07 9.1E-12 68.6 11.5 130 11-153 92-254 (297)
273 3j16_B RLI1P; ribosome recycli 98.7 1.8E-07 6.2E-12 75.8 11.2 42 9-50 364-408 (608)
274 4gp7_A Metallophosphoesterase; 98.7 4.8E-09 1.7E-13 71.8 1.7 29 10-40 1-29 (171)
275 2yv5_A YJEQ protein; hydrolase 98.7 3E-08 1E-12 73.9 6.1 58 21-82 166-228 (302)
276 1vma_A Cell division protein F 98.6 4E-08 1.4E-12 73.3 5.9 133 19-162 103-272 (306)
277 2bbs_A Cystic fibrosis transme 98.6 1.3E-08 4.4E-13 75.4 2.9 42 6-49 52-93 (290)
278 1u0l_A Probable GTPase ENGC; p 98.6 3.2E-08 1.1E-12 73.7 4.5 59 21-83 170-234 (301)
279 3g5u_A MCG1178, multidrug resi 98.6 3.8E-08 1.3E-12 86.0 5.5 43 6-50 1047-1089(1284)
280 1ye8_A Protein THEP1, hypothet 98.6 3.3E-07 1.1E-11 63.1 9.2 23 22-44 2-24 (178)
281 1zu4_A FTSY; GTPase, signal re 98.6 1.5E-07 5.2E-12 70.6 8.0 141 9-162 96-277 (320)
282 1htw_A HI0065; nucleotide-bind 98.6 3.3E-08 1.1E-12 66.8 3.5 40 8-50 23-62 (158)
283 1z6g_A Guanylate kinase; struc 98.5 4.5E-08 1.5E-12 69.6 2.6 35 8-44 13-47 (218)
284 2rcn_A Probable GTPase ENGC; Y 98.5 6E-08 2.1E-12 73.7 3.3 60 21-83 216-281 (358)
285 3q5d_A Atlastin-1; G protein, 98.5 8.9E-07 3.1E-11 69.2 9.7 107 17-133 64-197 (447)
286 2jeo_A Uridine-cytidine kinase 98.5 9.1E-08 3.1E-12 69.1 3.3 39 3-43 10-48 (245)
287 2px0_A Flagellar biosynthesis 98.4 7.2E-08 2.4E-12 71.7 2.7 131 20-164 105-264 (296)
288 3thx_A DNA mismatch repair pro 98.4 3.7E-06 1.3E-10 71.2 12.8 34 5-40 649-682 (934)
289 2pt7_A CAG-ALFA; ATPase, prote 98.4 1.1E-07 3.8E-12 71.7 3.1 39 9-49 162-200 (330)
290 2xxa_A Signal recognition part 98.4 4.1E-06 1.4E-10 65.3 12.1 124 18-153 98-255 (433)
291 2ffh_A Protein (FFH); SRP54, s 98.4 1.9E-06 6.6E-11 66.9 9.4 123 19-153 97-252 (425)
292 3thx_B DNA mismatch repair pro 98.3 2.3E-06 7.9E-11 72.3 9.8 37 4-42 659-695 (918)
293 2v9p_A Replication protein E1; 98.3 1.2E-07 4.1E-12 70.6 1.7 36 7-44 115-150 (305)
294 1yqt_A RNAse L inhibitor; ATP- 98.3 4.8E-07 1.6E-11 72.5 4.9 41 7-50 37-77 (538)
295 2hf9_A Probable hydrogenase ni 98.3 6.7E-07 2.3E-11 63.4 4.9 24 20-43 38-61 (226)
296 1znw_A Guanylate kinase, GMP k 98.3 4E-07 1.4E-11 64.0 3.0 30 13-44 15-44 (207)
297 3bk7_A ABC transporter ATP-bin 98.3 7.4E-07 2.5E-11 72.3 4.9 41 7-50 107-147 (607)
298 3lnc_A Guanylate kinase, GMP k 98.2 2.6E-07 9E-12 66.0 1.7 36 7-44 16-52 (231)
299 3tr0_A Guanylate kinase, GMP k 98.2 6.2E-07 2.1E-11 62.6 3.2 24 21-44 8-31 (205)
300 1ls1_A Signal recognition part 98.2 5.8E-06 2E-10 61.3 8.6 123 19-153 97-252 (295)
301 3b85_A Phosphate starvation-in 98.2 2.8E-07 9.7E-12 65.0 1.0 30 21-51 23-52 (208)
302 2iw3_A Elongation factor 3A; a 98.2 3.7E-07 1.3E-11 77.3 1.5 42 6-49 687-728 (986)
303 3ux8_A Excinuclease ABC, A sub 98.2 5.7E-06 1.9E-10 68.0 8.3 30 6-37 32-61 (670)
304 2eyu_A Twitching motility prot 98.2 5E-07 1.7E-11 65.9 1.8 37 7-47 16-52 (261)
305 3j16_B RLI1P; ribosome recycli 98.2 1.8E-06 6.1E-11 70.1 5.1 35 15-51 100-134 (608)
306 3a00_A Guanylate kinase, GMP k 98.2 5.8E-07 2E-11 62.1 2.0 25 21-45 2-26 (186)
307 1wb9_A DNA mismatch repair pro 98.2 1.4E-05 4.8E-10 66.8 10.4 39 3-44 593-631 (800)
308 2o8b_B DNA mismatch repair pro 98.2 2.3E-05 7.9E-10 67.1 11.9 40 5-45 769-813 (1022)
309 3ozx_A RNAse L inhibitor; ATP 98.2 1.8E-06 6E-11 69.2 4.8 30 21-50 26-55 (538)
310 1lvg_A Guanylate kinase, GMP k 98.1 7.9E-07 2.7E-11 62.1 2.4 24 21-44 5-28 (198)
311 2npi_A Protein CLP1; CLP1-PCF1 98.1 4.5E-07 1.5E-11 71.3 1.0 38 10-49 130-167 (460)
312 1s96_A Guanylate kinase, GMP k 98.1 1.1E-06 3.8E-11 62.4 2.9 25 21-45 17-41 (219)
313 2gza_A Type IV secretion syste 98.1 4.2E-07 1.4E-11 69.4 0.5 39 9-49 166-204 (361)
314 3jvv_A Twitching mobility prot 98.1 8.1E-06 2.8E-10 62.1 7.6 27 21-47 124-150 (356)
315 1ewq_A DNA mismatch repair pro 98.1 2.8E-05 9.5E-10 64.7 11.0 35 5-44 566-600 (765)
316 1zp6_A Hypothetical protein AT 98.1 2.6E-06 8.7E-11 58.8 4.1 23 21-43 10-32 (191)
317 1kgd_A CASK, peripheral plasma 98.1 1.8E-06 6.2E-11 59.3 3.0 24 21-44 6-29 (180)
318 3euj_A Chromosome partition pr 98.1 1.6E-06 5.5E-11 68.3 2.9 41 7-50 19-59 (483)
319 3ec2_A DNA replication protein 98.1 2.2E-05 7.7E-10 53.6 8.4 25 21-45 39-63 (180)
320 3asz_A Uridine kinase; cytidin 98.1 2.1E-06 7.3E-11 60.2 3.1 25 20-44 6-30 (211)
321 3c8u_A Fructokinase; YP_612366 98.0 2.7E-06 9.3E-11 59.7 3.2 27 19-45 21-47 (208)
322 2j41_A Guanylate kinase; GMP, 98.0 3E-06 1E-10 59.1 3.3 28 15-44 3-30 (207)
323 3vaa_A Shikimate kinase, SK; s 98.0 3.5E-06 1.2E-10 58.7 3.5 35 6-42 13-47 (199)
324 1zcb_A G alpha I/13; GTP-bindi 98.0 1.8E-05 6.1E-10 60.4 7.6 80 59-151 191-281 (362)
325 1lw7_A Transcriptional regulat 98.0 2.4E-06 8.1E-11 65.2 2.6 40 9-48 159-198 (365)
326 2obl_A ESCN; ATPase, hydrolase 98.0 1.2E-06 4.2E-11 66.4 0.9 39 7-48 61-99 (347)
327 3ney_A 55 kDa erythrocyte memb 98.0 4.2E-06 1.4E-10 58.4 3.3 27 18-44 17-43 (197)
328 2iw3_A Elongation factor 3A; a 98.0 1.7E-06 5.7E-11 73.4 1.4 37 5-43 448-484 (986)
329 4ido_A Atlastin-1; GTPase, GTP 98.0 0.00027 9.3E-09 55.2 13.5 127 17-150 64-221 (457)
330 2dpy_A FLII, flagellum-specifi 98.0 2E-06 6.9E-11 67.2 1.7 40 7-49 147-186 (438)
331 2bbw_A Adenylate kinase 4, AK4 97.9 5.1E-06 1.7E-10 59.8 3.5 29 20-48 27-58 (246)
332 1knq_A Gluconate kinase; ALFA/ 97.9 6.7E-06 2.3E-10 55.9 3.7 26 17-42 5-30 (175)
333 3aez_A Pantothenate kinase; tr 97.9 6.6E-06 2.3E-10 61.5 3.6 28 19-46 89-116 (312)
334 2i3b_A HCR-ntpase, human cance 97.9 2.9E-06 9.8E-11 58.9 1.4 28 21-49 2-29 (189)
335 3tau_A Guanylate kinase, GMP k 97.9 8.1E-06 2.8E-10 57.3 3.6 25 21-45 9-33 (208)
336 4eun_A Thermoresistant glucoki 97.9 6.8E-06 2.3E-10 57.3 3.1 23 21-43 30-52 (200)
337 2oap_1 GSPE-2, type II secreti 97.9 2.6E-06 8.9E-11 67.8 0.7 36 11-48 253-288 (511)
338 1azs_C GS-alpha; complex (lyas 97.9 2.4E-05 8.2E-10 60.4 6.0 80 59-151 207-297 (402)
339 3uie_A Adenylyl-sulfate kinase 97.9 4.8E-06 1.7E-10 58.1 1.9 31 12-44 19-49 (200)
340 3ux8_A Excinuclease ABC, A sub 97.8 3.9E-06 1.3E-10 69.0 1.6 33 7-41 337-369 (670)
341 2ehv_A Hypothetical protein PH 97.8 1.1E-05 3.9E-10 57.7 3.8 26 14-41 26-51 (251)
342 1sq5_A Pantothenate kinase; P- 97.8 8.5E-06 2.9E-10 60.8 2.9 27 18-44 78-104 (308)
343 2bdt_A BH3686; alpha-beta prot 97.8 9.4E-06 3.2E-10 55.9 2.9 22 21-42 3-24 (189)
344 4e22_A Cytidylate kinase; P-lo 97.8 1.2E-05 4.1E-10 58.2 3.5 30 20-49 27-59 (252)
345 3kta_A Chromosome segregation 97.8 1.4E-05 4.7E-10 54.7 3.5 32 9-43 18-49 (182)
346 4a74_A DNA repair and recombin 97.8 1.1E-05 3.6E-10 57.1 3.0 28 15-44 22-49 (231)
347 1p9r_A General secretion pathw 97.8 9.7E-06 3.3E-10 62.9 2.7 27 21-47 168-194 (418)
348 1cr0_A DNA primase/helicase; R 97.8 7E-06 2.4E-10 60.7 1.6 39 7-47 24-62 (296)
349 2ewv_A Twitching motility prot 97.8 1.3E-05 4.6E-10 61.3 3.0 26 21-46 137-162 (372)
350 2vp4_A Deoxynucleoside kinase; 97.7 2.1E-05 7.2E-10 56.1 3.9 29 13-43 15-43 (230)
351 1tf7_A KAIC; homohexamer, hexa 97.7 7E-06 2.4E-10 65.6 1.1 39 5-45 25-66 (525)
352 1kag_A SKI, shikimate kinase I 97.7 1.5E-05 5E-10 54.0 2.4 23 21-43 5-27 (173)
353 3pih_A Uvrabc system protein A 97.7 0.00081 2.8E-08 57.0 13.2 30 7-38 599-628 (916)
354 2x8a_A Nuclear valosin-contain 97.7 8E-06 2.7E-10 59.9 0.8 33 8-44 36-68 (274)
355 4dzz_A Plasmid partitioning pr 97.6 7.5E-05 2.6E-09 51.8 5.4 82 69-164 75-156 (206)
356 1nij_A Hypothetical protein YJ 97.6 3.2E-05 1.1E-09 57.9 3.3 25 20-44 4-28 (318)
357 2qt1_A Nicotinamide riboside k 97.6 5.1E-05 1.8E-09 53.0 4.2 25 20-44 21-45 (207)
358 3nwj_A ATSK2; P loop, shikimat 97.6 7.3E-06 2.5E-10 59.4 -0.3 34 7-42 34-70 (250)
359 2f1r_A Molybdopterin-guanine d 97.6 1.2E-05 4E-10 55.0 0.6 26 21-46 3-28 (171)
360 1svm_A Large T antigen; AAA+ f 97.6 2.4E-05 8.2E-10 59.9 2.4 33 9-43 160-192 (377)
361 3tqc_A Pantothenate kinase; bi 97.6 4.1E-05 1.4E-09 57.4 3.6 26 18-43 90-115 (321)
362 2qor_A Guanylate kinase; phosp 97.6 3.4E-05 1.2E-09 53.9 3.0 25 20-44 12-36 (204)
363 1jjv_A Dephospho-COA kinase; P 97.6 4.4E-05 1.5E-09 53.3 3.5 22 21-42 3-24 (206)
364 3qf7_A RAD50; ABC-ATPase, ATPa 97.6 2.1E-05 7.3E-10 60.0 1.9 29 10-41 16-44 (365)
365 1rz3_A Hypothetical protein rb 97.6 4.6E-05 1.6E-09 53.1 3.5 24 19-42 21-44 (201)
366 1sxj_E Activator 1 40 kDa subu 97.6 0.00013 4.6E-09 54.9 6.3 22 21-42 37-58 (354)
367 2xtz_A Guanine nucleotide-bind 97.6 0.00011 3.8E-09 55.8 5.7 72 69-151 182-263 (354)
368 1y63_A LMAJ004144AAA protein; 97.6 5.8E-05 2E-09 51.8 3.8 31 11-43 3-33 (184)
369 1ex7_A Guanylate kinase; subst 97.6 2.7E-05 9.2E-10 53.8 2.1 24 21-44 2-25 (186)
370 1cke_A CK, MSSA, protein (cyti 97.6 3.8E-05 1.3E-09 54.3 2.9 23 21-43 6-28 (227)
371 2if2_A Dephospho-COA kinase; a 97.5 3.8E-05 1.3E-09 53.4 2.7 22 21-42 2-23 (204)
372 1ixz_A ATP-dependent metallopr 97.5 3.4E-05 1.2E-09 55.6 2.5 31 10-44 43-73 (254)
373 2kjq_A DNAA-related protein; s 97.5 3.1E-05 1.1E-09 51.6 2.0 26 20-45 36-61 (149)
374 4aby_A DNA repair protein RECN 97.5 1.1E-05 3.7E-10 62.4 -0.6 33 7-42 50-82 (415)
375 1f2t_A RAD50 ABC-ATPase; DNA d 97.5 8.2E-05 2.8E-09 49.5 3.6 21 21-41 24-44 (149)
376 1iy2_A ATP-dependent metallopr 97.5 4.7E-05 1.6E-09 55.7 2.6 31 10-44 67-97 (278)
377 1e69_A Chromosome segregation 97.5 6.8E-05 2.3E-09 56.2 3.3 33 6-41 13-45 (322)
378 1np6_A Molybdopterin-guanine d 97.5 6E-05 2.1E-09 51.5 2.8 23 21-43 7-29 (174)
379 4b4t_L 26S protease subunit RP 97.5 0.0011 3.7E-08 51.7 10.1 23 21-43 216-238 (437)
380 1odf_A YGR205W, hypothetical 3 97.4 8.7E-05 3E-09 54.9 3.6 28 17-44 28-55 (290)
381 1uj2_A Uridine-cytidine kinase 97.4 9E-05 3.1E-09 53.5 3.6 26 17-42 19-44 (252)
382 4b4t_K 26S protease regulatory 97.4 0.0013 4.4E-08 51.2 10.0 23 21-43 207-229 (428)
383 2w0m_A SSO2452; RECA, SSPF, un 97.4 6.2E-05 2.1E-09 53.1 2.5 29 14-44 19-47 (235)
384 1qhl_A Protein (cell division 97.4 8.7E-06 3E-10 58.1 -2.1 29 21-49 28-56 (227)
385 3t61_A Gluconokinase; PSI-biol 97.4 6.3E-05 2.1E-09 52.3 2.3 23 21-43 19-41 (202)
386 4b4t_I 26S protease regulatory 97.4 0.0017 5.8E-08 50.4 10.3 23 21-43 217-239 (437)
387 3kb2_A SPBC2 prophage-derived 97.4 0.0001 3.5E-09 49.6 3.2 23 21-43 2-24 (173)
388 2qz4_A Paraplegin; AAA+, SPG7, 97.4 0.0017 5.7E-08 46.6 9.7 23 21-43 40-62 (262)
389 2o5v_A DNA replication and rep 97.4 0.00012 4.1E-09 55.7 3.6 32 8-42 17-48 (359)
390 3lw7_A Adenylate kinase relate 97.4 0.00012 3.9E-09 49.3 3.2 20 21-40 2-21 (179)
391 4b4t_J 26S protease regulatory 97.4 0.002 6.8E-08 49.7 10.2 23 21-43 183-205 (405)
392 3cm0_A Adenylate kinase; ATP-b 97.3 0.00015 5.1E-09 49.5 3.5 23 20-42 4-26 (186)
393 1ly1_A Polynucleotide kinase; 97.3 0.00015 5.2E-09 49.1 3.5 22 21-42 3-24 (181)
394 2pez_A Bifunctional 3'-phospho 97.3 0.00013 4.6E-09 49.6 3.2 24 20-43 5-28 (179)
395 4b4t_M 26S protease regulatory 97.3 0.00062 2.1E-08 53.0 7.2 23 21-43 216-238 (434)
396 2ygr_A Uvrabc system protein A 97.3 5.9E-05 2E-09 64.0 1.5 33 7-41 657-689 (993)
397 2yvu_A Probable adenylyl-sulfa 97.3 0.00022 7.6E-09 48.8 4.2 26 19-44 12-37 (186)
398 3h4m_A Proteasome-activating n 97.3 0.0012 4.3E-08 48.0 8.3 23 21-43 52-74 (285)
399 4b4t_H 26S protease regulatory 97.3 0.0014 4.9E-08 51.3 8.9 23 21-43 244-266 (467)
400 2wwf_A Thymidilate kinase, put 97.3 0.0002 6.9E-09 49.9 3.9 25 19-43 9-33 (212)
401 1qhx_A CPT, protein (chloramph 97.3 0.00017 5.7E-09 48.9 3.3 23 21-43 4-26 (178)
402 1kht_A Adenylate kinase; phosp 97.3 0.00017 5.7E-09 49.4 3.3 22 21-42 4-25 (192)
403 3qks_A DNA double-strand break 97.3 0.00021 7.1E-09 50.0 3.6 21 21-41 24-44 (203)
404 2jaq_A Deoxyguanosine kinase; 97.2 0.0002 6.7E-09 49.6 3.2 21 22-42 2-22 (205)
405 2cvh_A DNA repair and recombin 97.2 0.00017 5.9E-09 50.5 2.9 26 15-42 17-42 (220)
406 1uf9_A TT1252 protein; P-loop, 97.2 0.00024 8.2E-09 49.1 3.6 26 18-43 6-31 (203)
407 2rhm_A Putative kinase; P-loop 97.2 0.00022 7.7E-09 48.9 3.4 22 21-42 6-27 (193)
408 2r6f_A Excinuclease ABC subuni 97.2 5.9E-05 2E-09 63.9 0.5 33 7-41 639-671 (972)
409 1gvn_B Zeta; postsegregational 97.2 0.00027 9.1E-09 52.1 4.0 26 17-42 30-55 (287)
410 1in4_A RUVB, holliday junction 97.2 0.00016 5.3E-09 54.5 2.5 24 21-44 52-75 (334)
411 1xjc_A MOBB protein homolog; s 97.2 0.00026 8.8E-09 48.1 3.3 23 21-43 5-27 (169)
412 3trf_A Shikimate kinase, SK; a 97.2 0.00025 8.5E-09 48.4 3.3 22 21-42 6-27 (185)
413 1nks_A Adenylate kinase; therm 97.2 0.00025 8.6E-09 48.5 3.3 23 21-43 2-24 (194)
414 4eaq_A DTMP kinase, thymidylat 97.2 0.00034 1.2E-08 49.8 4.0 33 11-43 16-49 (229)
415 1n0w_A DNA repair protein RAD5 97.2 0.0002 7E-09 50.9 2.9 23 21-43 25-47 (243)
416 1ukz_A Uridylate kinase; trans 97.2 0.00036 1.2E-08 48.4 4.1 24 19-42 14-37 (203)
417 2plr_A DTMP kinase, probable t 97.2 0.0003 1E-08 48.9 3.6 23 21-43 5-27 (213)
418 3fb4_A Adenylate kinase; psych 97.2 0.00025 8.6E-09 49.7 3.2 21 22-42 2-22 (216)
419 1tev_A UMP-CMP kinase; ploop, 97.2 0.0003 1E-08 48.2 3.5 23 20-42 3-25 (196)
420 2cdn_A Adenylate kinase; phosp 97.1 0.00036 1.2E-08 48.3 3.9 24 19-42 19-42 (201)
421 3qkt_A DNA double-strand break 97.1 0.00029 9.9E-09 53.1 3.6 21 21-41 24-44 (339)
422 2ze6_A Isopentenyl transferase 97.1 0.0003 1E-08 50.9 3.4 23 21-43 2-24 (253)
423 2vf7_A UVRA2, excinuclease ABC 97.1 4.9E-05 1.7E-09 63.7 -0.8 34 7-42 512-546 (842)
424 1w1w_A Structural maintenance 97.1 0.00022 7.5E-09 55.5 2.9 24 21-44 27-50 (430)
425 2v54_A DTMP kinase, thymidylat 97.1 0.00032 1.1E-08 48.5 3.4 23 21-43 5-27 (204)
426 3dl0_A Adenylate kinase; phosp 97.1 0.00029 1E-08 49.4 3.2 21 22-42 2-22 (216)
427 1nlf_A Regulatory protein REPA 97.1 0.00023 8E-09 52.0 2.7 23 21-43 31-53 (279)
428 2c95_A Adenylate kinase 1; tra 97.1 0.00033 1.1E-08 48.1 3.3 22 21-42 10-31 (196)
429 1vht_A Dephospho-COA kinase; s 97.1 0.00037 1.3E-08 48.9 3.6 22 21-42 5-26 (218)
430 3iij_A Coilin-interacting nucl 97.1 0.00038 1.3E-08 47.3 3.5 22 21-42 12-33 (180)
431 1via_A Shikimate kinase; struc 97.1 0.00028 9.6E-09 47.8 2.8 22 21-42 5-26 (175)
432 1aky_A Adenylate kinase; ATP:A 97.1 0.0004 1.4E-08 48.9 3.4 22 21-42 5-26 (220)
433 1nn5_A Similar to deoxythymidy 97.0 0.00039 1.3E-08 48.5 3.3 22 21-42 10-31 (215)
434 1pzn_A RAD51, DNA repair and r 97.0 0.00014 4.7E-09 55.2 1.0 31 12-44 125-155 (349)
435 1u0l_A Probable GTPase ENGC; p 97.0 0.00045 1.5E-08 51.2 3.7 66 70-153 63-130 (301)
436 1fnn_A CDC6P, cell division co 97.0 0.0096 3.3E-07 45.1 11.2 23 22-44 46-68 (389)
437 2p5t_B PEZT; postsegregational 97.0 0.00031 1.1E-08 50.7 2.8 26 18-43 30-55 (253)
438 1zd8_A GTP:AMP phosphotransfer 97.0 0.00038 1.3E-08 49.2 3.2 22 21-42 8-29 (227)
439 3tlx_A Adenylate kinase 2; str 97.0 0.00048 1.6E-08 49.4 3.6 24 19-42 28-51 (243)
440 3cr8_A Sulfate adenylyltranfer 97.0 0.0002 6.8E-09 57.5 1.7 26 20-45 369-394 (552)
441 1m7g_A Adenylylsulfate kinase; 97.0 0.00041 1.4E-08 48.6 3.1 24 21-44 26-49 (211)
442 1gtv_A TMK, thymidylate kinase 97.0 0.00015 5E-09 50.7 0.8 22 22-43 2-23 (214)
443 2pt5_A Shikimate kinase, SK; a 97.0 0.00046 1.6E-08 46.2 3.2 21 22-42 2-22 (168)
444 1xwi_A SKD1 protein; VPS4B, AA 97.0 0.0075 2.6E-07 45.0 10.2 23 21-43 46-68 (322)
445 1qf9_A UMP/CMP kinase, protein 97.0 0.00067 2.3E-08 46.3 4.1 22 21-42 7-28 (194)
446 2vli_A Antibiotic resistance p 97.0 0.00032 1.1E-08 47.7 2.3 23 20-42 5-27 (183)
447 2ce7_A Cell division protein F 97.0 0.0047 1.6E-07 48.7 9.2 22 22-43 51-72 (476)
448 3r20_A Cytidylate kinase; stru 97.0 0.0005 1.7E-08 49.1 3.3 22 21-42 10-31 (233)
449 2z0h_A DTMP kinase, thymidylat 97.0 0.00049 1.7E-08 47.3 3.2 22 22-43 2-23 (197)
450 2bwj_A Adenylate kinase 5; pho 97.0 0.0005 1.7E-08 47.3 3.2 22 21-42 13-34 (199)
451 1zak_A Adenylate kinase; ATP:A 97.0 0.00043 1.5E-08 48.8 2.8 22 21-42 6-27 (222)
452 2pbr_A DTMP kinase, thymidylat 96.9 0.00054 1.8E-08 46.9 3.2 21 22-42 2-22 (195)
453 1q3t_A Cytidylate kinase; nucl 96.9 0.00063 2.1E-08 48.5 3.5 24 19-42 15-38 (236)
454 1e4v_A Adenylate kinase; trans 96.9 0.00052 1.8E-08 48.1 3.1 21 22-42 2-22 (214)
455 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00036 1.2E-08 52.9 2.3 34 10-43 14-47 (359)
456 2iyv_A Shikimate kinase, SK; t 96.9 0.00048 1.6E-08 47.0 2.7 22 21-42 3-24 (184)
457 1njg_A DNA polymerase III subu 96.9 0.00056 1.9E-08 48.0 3.2 24 21-44 46-69 (250)
458 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00068 2.3E-08 49.1 3.6 22 21-42 5-26 (260)
459 1e6c_A Shikimate kinase; phosp 96.9 0.00052 1.8E-08 46.1 2.8 22 21-42 3-24 (173)
460 2grj_A Dephospho-COA kinase; T 96.9 0.00072 2.5E-08 46.9 3.5 25 19-43 11-35 (192)
461 2f6r_A COA synthase, bifunctio 96.9 0.00077 2.6E-08 49.5 3.7 23 19-41 74-96 (281)
462 2chg_A Replication factor C sm 96.9 0.012 4.1E-07 40.5 9.8 22 22-43 40-61 (226)
463 2xb4_A Adenylate kinase; ATP-b 96.9 0.0007 2.4E-08 47.9 3.2 21 22-42 2-22 (223)
464 1lv7_A FTSH; alpha/beta domain 96.8 0.00051 1.7E-08 49.5 2.5 23 21-43 46-68 (257)
465 2dhr_A FTSH; AAA+ protein, hex 96.8 0.00068 2.3E-08 53.8 3.2 32 9-44 57-88 (499)
466 3auy_A DNA double-strand break 96.8 0.0005 1.7E-08 52.5 2.3 29 10-41 18-46 (371)
467 3be4_A Adenylate kinase; malar 96.8 0.00078 2.7E-08 47.3 3.1 22 21-42 6-27 (217)
468 1jbk_A CLPB protein; beta barr 96.8 0.00096 3.3E-08 45.1 3.4 24 21-44 44-67 (195)
469 3umf_A Adenylate kinase; rossm 96.8 0.0011 3.6E-08 46.9 3.7 24 20-43 29-52 (217)
470 3cf2_A TER ATPase, transitiona 96.8 0.0064 2.2E-07 50.9 8.7 70 20-115 238-307 (806)
471 3lv8_A DTMP kinase, thymidylat 96.8 0.00093 3.2E-08 47.8 3.2 34 9-42 16-49 (236)
472 3sr0_A Adenylate kinase; phosp 96.7 0.00099 3.4E-08 46.7 3.2 23 21-43 1-23 (206)
473 1ak2_A Adenylate kinase isoenz 96.7 0.0011 3.7E-08 47.1 3.4 23 20-42 16-38 (233)
474 1a7j_A Phosphoribulokinase; tr 96.7 0.00054 1.9E-08 50.6 1.8 23 20-42 5-27 (290)
475 1zuh_A Shikimate kinase; alpha 96.7 0.0011 3.9E-08 44.4 3.3 22 21-42 8-29 (168)
476 3k1j_A LON protease, ATP-depen 96.7 0.00024 8.2E-09 57.7 -0.2 36 8-45 50-85 (604)
477 2qmh_A HPR kinase/phosphorylas 96.7 0.0014 4.7E-08 45.7 3.6 23 21-43 35-57 (205)
478 3ake_A Cytidylate kinase; CMP 96.7 0.0011 3.8E-08 45.8 3.2 21 22-42 4-24 (208)
479 1puj_A YLQF, conserved hypothe 96.7 0.002 6.7E-08 47.4 4.6 51 96-153 15-65 (282)
480 1sxj_C Activator 1 40 kDa subu 96.7 0.0002 6.9E-09 53.8 -0.7 23 22-44 48-70 (340)
481 2dr3_A UPF0273 protein PH0284; 96.7 0.00079 2.7E-08 47.9 2.4 25 15-41 20-44 (247)
482 3exa_A TRNA delta(2)-isopenten 96.7 0.0013 4.4E-08 49.0 3.6 25 20-44 3-27 (322)
483 3a8t_A Adenylate isopentenyltr 96.7 0.0015 5E-08 49.2 3.8 24 21-44 41-64 (339)
484 3bos_A Putative DNA replicatio 96.7 0.0012 4.2E-08 46.5 3.3 25 20-44 52-76 (242)
485 1sxj_D Activator 1 41 kDa subu 96.6 0.00071 2.4E-08 50.8 2.1 24 21-44 59-82 (353)
486 1ltq_A Polynucleotide kinase; 96.6 0.0014 4.7E-08 48.3 3.5 22 21-42 3-24 (301)
487 2w58_A DNAI, primosome compone 96.6 0.0014 4.7E-08 45.3 3.3 24 21-44 55-78 (202)
488 3cf0_A Transitional endoplasmi 96.6 0.0011 3.8E-08 49.0 2.9 23 21-43 50-72 (301)
489 3ice_A Transcription terminati 96.6 0.00082 2.8E-08 51.6 2.2 31 13-43 167-197 (422)
490 4fcw_A Chaperone protein CLPB; 96.6 0.0017 5.9E-08 47.8 3.8 24 21-44 48-71 (311)
491 3vfd_A Spastin; ATPase, microt 96.6 0.012 4E-07 45.1 8.6 23 21-43 149-171 (389)
492 1tf7_A KAIC; homohexamer, hexa 96.6 0.001 3.4E-08 53.1 2.5 31 14-46 277-307 (525)
493 3b9p_A CG5977-PA, isoform A; A 96.5 0.0013 4.3E-08 48.4 2.8 23 21-43 55-77 (297)
494 3d3q_A TRNA delta(2)-isopenten 96.5 0.0016 5.6E-08 49.0 3.4 23 21-43 8-30 (340)
495 4ad8_A DNA repair protein RECN 96.5 0.00052 1.8E-08 54.7 0.7 31 8-41 51-81 (517)
496 3m6a_A ATP-dependent protease 96.5 0.0013 4.3E-08 52.8 2.9 25 20-44 108-132 (543)
497 2p65_A Hypothetical protein PF 96.5 0.0013 4.4E-08 44.4 2.5 25 20-44 43-67 (187)
498 3foz_A TRNA delta(2)-isopenten 96.5 0.0022 7.6E-08 47.7 3.9 23 21-43 11-33 (316)
499 3zvl_A Bifunctional polynucleo 96.5 0.0024 8.2E-08 49.5 4.2 25 19-43 257-281 (416)
500 3crm_A TRNA delta(2)-isopenten 96.5 0.002 6.8E-08 48.2 3.5 23 21-43 6-28 (323)
No 1
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.92 E-value=1.6e-24 Score=157.07 Aligned_cols=143 Identities=41% Similarity=0.722 Sum_probs=102.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
.....+|+++|++|+|||||+|+|++...+..+....+.|..+......+ .+..+.+|||||+.+...........+.+
T Consensus 26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~~ 104 (239)
T 3lxx_A 26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEIIR 104 (239)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEe-CCceEEEEECCCccCCCCCHHHHHHHHHH
Confidence 34458999999999999999999999887655433335566565555666 77899999999999877667777788888
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 163 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 163 (174)
++..+.+++|++|+|+|++ +++..+..+++.+.+.++.....|+++|+||+|+... ..+++++.
T Consensus 105 ~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~--~~~~~~i~ 168 (239)
T 3lxx_A 105 CILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGD--TNLHDYLR 168 (239)
T ss_dssp HHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------
T ss_pred HHHhcCCCCcEEEEEeeCC-CCCHHHHHHHHHHHHHhhhhccceEEEEEeCCccCCc--ccHHHHHH
Confidence 8888889999999999998 7778888888888888777655799999999999865 34554443
No 2
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.90 E-value=3.5e-23 Score=150.86 Aligned_cols=142 Identities=35% Similarity=0.557 Sum_probs=102.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh-HHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVGKEIVK 96 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~-~~~~~~~~~ 96 (174)
.+..+|+++|.+|+|||||+|+|++...+.......+.|..+......+ .+..+.++||||+.+..... +.....+.+
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~~ 97 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERGH 97 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHHH
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEE-CCcEEEEEECCCCCCCCCCcHHHHHHHHHH
Confidence 4458999999999999999999999886654433334565565555656 78899999999998643322 233445556
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhh-cCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI-FDYMIVVFTGGDELEDNDETLEDYLGR 164 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~-~~~~~iv~tk~D~~~~~~~~~~~~~~~ 164 (174)
++..+.+++|++|+|+|++ +++..+..+++.+.+.++... ..|++++.||.|+... .++++++.
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~---~~~~~l~~ 162 (247)
T 3lxw_A 98 CYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG---SLHDYVSN 162 (247)
T ss_dssp HHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHH
T ss_pred HHHhcCCCCCEEEEEEeCC-CCCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCCC---CHHHHHhh
Confidence 6555679999999999998 788888999999999887653 3588999999998654 45555543
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.88 E-value=1.4e-21 Score=143.16 Aligned_cols=135 Identities=33% Similarity=0.584 Sum_probs=103.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
..+..+|+++|++|+|||||+|+|++...+.......+.|..+......+ .+..+.+|||||+.++....+...+.+.+
T Consensus 19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~~ 97 (260)
T 2xtp_A 19 SRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQR 97 (260)
T ss_dssp --CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEe-CCCEEEEEECcCCCCCCCCHHHHHHHHHH
Confidence 34458999999999999999999999875544322222455555555555 67889999999999876666666667777
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEe-CcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~t-k~D~~~~ 153 (174)
.+..+++.+|++++|+|++ .++..+..+++.+.+.++.....|.++++| |+|+...
T Consensus 98 ~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~ 154 (260)
T 2xtp_A 98 CYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG 154 (260)
T ss_dssp HHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC
T ss_pred HHHhcCCCCcEEEEEEeCC-CCCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCc
Confidence 7777889999999999999 588888888888888877654467888888 9999754
No 4
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.86 E-value=1.7e-20 Score=137.78 Aligned_cols=143 Identities=22% Similarity=0.314 Sum_probs=105.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+..+|+++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.+|||||+.++....+...+.+.++
T Consensus 34 ~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~~ 111 (262)
T 3def_A 34 MNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKGF 111 (262)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC-SSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCcceeeEEEEEEE-CCeeEEEEECCCCCCcccchHHHHHHHHHH
Confidence 34589999999999999999999997743222 2233344444455555 678999999999988655555555545544
Q ss_pred HHhccCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhcc
Q 030624 98 IGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 164 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 164 (174)
+ ...++|++++|++.+. .++..+..+++.+.+.++.....|+++|+||+|+...+...+++|+++
T Consensus 112 l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 112 L--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp T--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred H--hcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCCCCccHHHHHHh
Confidence 4 2457899999988753 577777899999999887766579999999999975555677777754
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.85 E-value=3.3e-20 Score=136.75 Aligned_cols=141 Identities=23% Similarity=0.333 Sum_probs=98.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
...+|+++|.+|+|||||+|+|++....... ...+.|.......... .+..+.+|||||+.++..........+.+++
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~ 115 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSFL 115 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhCCCccccc-CCCCcceeeEEEEEee-CCeEEEEEECCCCCCCccchHHHHHHHHHHh
Confidence 4589999999999999999999987643222 1223333333334444 6778999999999875443333333333322
Q ss_pred HhccCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624 99 GMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 163 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 163 (174)
...++|+++||++.+. .++..+..+++.+.+.++...+.|+++|+||+|+..++...+++|++
T Consensus 116 --~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~ 179 (270)
T 1h65_A 116 --LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS 179 (270)
T ss_dssp --TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHH
T ss_pred --hcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcCCCCHHHHHH
Confidence 2457899999988753 57777788999998887765556999999999987654335666553
No 6
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.83 E-value=3.8e-19 Score=132.91 Aligned_cols=127 Identities=21% Similarity=0.180 Sum_probs=91.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+...|+++|.+|+|||||+|+|++....... ...+.|.........+ .+..+.++||||+.+.. +.+.+.+....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs-~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~ 80 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEV 80 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHH
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCceeeec-CCCCceeEEEEEEEEe-CCcEEEEecCccccchh---hHHHHHHHHHH
Confidence 3468999999999999999999997643221 1122233222222223 67789999999998743 34555667777
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++..+|++++|+|++++++..+..+++.+.+.. ...|+++|+||+|+...
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~---~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLV---GKVPILLVGNKLDAAKY 132 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT---TTSCEEEEEECGGGCSS
T ss_pred HHHHhcCCEEEEEEECCCCCChHHHHHHHHHHhhc---CCCCEEEEEECcccCCc
Confidence 77889999999999998788877766666665532 12699999999999765
No 7
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.82 E-value=2e-19 Score=134.87 Aligned_cols=129 Identities=19% Similarity=0.298 Sum_probs=92.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHH
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKE 93 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~ 93 (174)
.++.+...|+++|.+|+|||||+|+|++....... ...+.|.......... . +..+.++||||+.++. ........
T Consensus 5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~~ 81 (308)
T 3iev_A 5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGHS 81 (308)
T ss_dssp --CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHHH
T ss_pred CCCCCCCEEEEECCCCCcHHHHHHHHhCCCccccC-CCCCceeeEEEEEEec-CCCCeEEEEECcCCCccc-cchhHHHH
Confidence 34555679999999999999999999998743221 2233343333333334 5 7789999999998754 23456666
Q ss_pred HHHHHHhccCCceEEEEEEeCCCCCCHHHHHH-HHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~-l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
+...+..++..+|++++|+|++++.+..+... ++.+... ..|+++|+||+|+.
T Consensus 82 ~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 82 MVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKI 135 (308)
T ss_dssp HHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGS
T ss_pred HHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHHHhc-----CCCEEEEEECccCC
Confidence 77777777788899999999997888777655 5555442 26999999999997
No 8
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.81 E-value=6e-19 Score=126.03 Aligned_cols=132 Identities=12% Similarity=0.170 Sum_probs=88.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHH--HHHHH
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEF--VGKEI 94 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~--~~~~~ 94 (174)
.....+|+++|.+|+|||||+|+|++...........+.|............+..+.+|||||+.+....... ....+
T Consensus 26 ~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~ 105 (223)
T 4dhe_A 26 PTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQL 105 (223)
T ss_dssp CCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHH
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHH
Confidence 3445899999999999999999999976211111233344444444443224578999999998765333221 11222
Q ss_pred HHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 95 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..........+|++++|+|++++++..+..+++.+... ..|+++|+||+|+...
T Consensus 106 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~-----~~p~i~v~nK~Dl~~~ 159 (223)
T 4dhe_A 106 LSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPT-----GKPIHSLLTKCDKLTR 159 (223)
T ss_dssp HHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGG-----CCCEEEEEECGGGSCH
T ss_pred HHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhc-----CCCEEEEEeccccCCh
Confidence 22222235668999999999878887777777666552 2689999999999865
No 9
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.79 E-value=8.9e-18 Score=117.43 Aligned_cols=127 Identities=20% Similarity=0.271 Sum_probs=79.3
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH--HHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIV 95 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~ 95 (174)
....+|+++|++|+|||||+|+|++...........+.|....... . +..+.+|||||+.+...... .....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~--~--~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~ 96 (195)
T 1svi_A 21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYI--I--NDELHFVDVPGYGFAKVSKSEREAWGRMI 96 (195)
T ss_dssp SCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEE--E--TTTEEEEECCCBCCCSSCHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEE--E--CCcEEEEECCCCCccccCHHHHHHHHHHH
Confidence 3458999999999999999999998752222122233333333222 2 34689999999876543322 1111222
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.........+|++++|+|++++.+..+...++.+... ..|+++|+||+|+...
T Consensus 97 ~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~ 149 (195)
T 1svi_A 97 ETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYY-----GIPVIVIATKADKIPK 149 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG
T ss_pred HHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEECcccCCh
Confidence 2222233566999999999877877776666666542 2699999999999865
No 10
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.79 E-value=2.4e-18 Score=118.56 Aligned_cols=126 Identities=21% Similarity=0.183 Sum_probs=82.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|++|+|||||+|+|++....... ...+.|.......+.+ ++..+.++||||+.+... ...........
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~ 78 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGREAAIVT-DIAGTTRDVLREHIHI-DGMPLHIIDTAGLREASD---EVERIGIERAW 78 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSTTCCCSCEEEEEEE-TTEEEEEEECCCCSCCSS---HHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcceee-CCCCceeceeeEEEEE-CCeEEEEEECCCcccchh---HHHHHHHHHHH
Confidence 379999999999999999999987532111 1223333333334444 566789999999976421 11111111112
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
..+..+|++++|+|++++.+.....+++.+.+.... ..|+++|+||+|+..
T Consensus 79 ~~~~~ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 79 QEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPA--KLPITVVRNKADITG 129 (172)
T ss_dssp HHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCT--TCCEEEEEECHHHHC
T ss_pred HHHHhCCEEEEEEECCCCCCHHHHHHHHHHHHhccc--CCCEEEEEECccCCc
Confidence 245678999999999866655556666666654322 268999999999854
No 11
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.78 E-value=4.7e-18 Score=115.14 Aligned_cols=122 Identities=25% Similarity=0.268 Sum_probs=83.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
++|+++|++|+|||||+|++++....... ...+.+.........+ .+..+.++||||...... ....+...+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~-~~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~----~~~~~~~~~~~ 75 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKKRSAVVA-DVPGVTRDLKEGVVET-DRGRFLLVDTGGLWSGDK----WEKKIQEKVDR 75 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHCCC------------CCEEEEEEE-TTEEEEEEECGGGCSSSS----CCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCeeecc-CCCCceecceEEEEEe-CCceEEEEECCCCCCccc----hHHHHHHHHHH
Confidence 68999999999999999999987632111 2223333344444444 567899999999987432 22334444455
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|.+++++..+..+.+.+... . .|+++|+||+|+...
T Consensus 76 ~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~---~--~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 76 ALEDAEVVLFAVDGRAELTQADYEVAEYLRRK---G--KPVILVATKVDDPKH 123 (161)
T ss_dssp HTTTCSEEEEEEESSSCCCHHHHHHHHHHHHH---T--CCEEEEEECCCSGGG
T ss_pred HHHhCCEEEEEEECCCcccHhHHHHHHHHHhc---C--CCEEEEEECcccccc
Confidence 67788999999999877777766666655552 2 689999999999754
No 12
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.78 E-value=2.7e-18 Score=134.53 Aligned_cols=123 Identities=22% Similarity=0.282 Sum_probs=85.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
++|+++|.+|+|||||+|.|++....... ...+.|.........+ .+..+.+|||||+.... .+.....+...+..
T Consensus 2 ~~v~ivG~pnvGKStL~nrl~~~~~~~v~-~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~~ 77 (439)
T 1mky_A 2 ATVLIVGRPNVGKSTLFNKLVKKKKAIVE-DEEGVTRDPVQDTVEW-YGKTFKLVDTCGVFDNP--QDIISQKMKEVTLN 77 (439)
T ss_dssp CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEE-TTEEEEEEECTTTTSSG--GGCCCHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCceec-CCCCCccceeeEEEEE-CCeEEEEEECCCccccc--cchHHHHHHHHHHH
Confidence 57999999999999999999987643222 3345566555666666 77889999999988531 12223445666666
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
++..+|++++|+|++++++..+..+.++++.. ..|+++|+||+|+.+
T Consensus 78 ~~~~ad~il~V~D~~~~~~~~d~~i~~~l~~~-----~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 78 MIREADLVLFVVDGKRGITKEDESLADFLRKS-----TVDTILVANKAENLR 124 (439)
T ss_dssp HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHH-----TCCEEEEEESCCSHH
T ss_pred HHHhCCEEEEEEECCCCCCHHHHHHHHHHHHc-----CCCEEEEEeCCCCcc
Confidence 78889999999999878888887776666553 268999999999853
No 13
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.77 E-value=8.5e-18 Score=116.78 Aligned_cols=118 Identities=14% Similarity=0.108 Sum_probs=80.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+..+|+++|++|+|||||+|++++.. ... ..+|.........+ ++..+.++||||..+ +...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~ 78 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGED-VDT----ISPTLGFNIKTLEH-RGFKLNIWDVGGQKS-----------LRSY 78 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTCC-CSS----CCCCSSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcCC-CCc----ccccCccceEEEEE-CCEEEEEEECCCCHh-----------HHHH
Confidence 345899999999999999999999876 211 22233333444555 678899999999854 4445
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+...+..+|++++|+|.+++.+... ..++..+..... ....|+++|+||+|+...
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 79 WRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEER-LAGATLLIFANKQDLPGA 134 (186)
T ss_dssp GGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-cCCCcEEEEEeCccCCCC
Confidence 5667889999999999985543333 233333332211 123699999999999765
No 14
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.77 E-value=2.3e-18 Score=118.63 Aligned_cols=125 Identities=17% Similarity=0.253 Sum_probs=83.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+..+|+++|++|+|||||+|++++....... ....+.........+ .+..+.++||||..+.... .
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~-----------~ 72 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSKVTEQE--AGGITQHIGAYQVTV-NDKKITFLDTPGHEAFTTM-----------R 72 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTCSSCSS--CCSSSTTCCCCEEEE-TTEEEEESCCCSSSSSSCS-----------C
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCccccCC--CCceeEeeeEEEEEe-CCceEEEEECCCCHHHHHH-----------H
Confidence 3479999999999999999999987643221 122222223333444 6678899999998764321 2
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 162 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~ 162 (174)
...+..+|++++|+|.+++......+.+..+. ... .|+++|+||+|+.......+.+.+
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~~~~~~~~l~~~~---~~~--~p~ilv~nK~Dl~~~~~~~~~~~~ 131 (178)
T 2lkc_A 73 ARGAQVTDIVILVVAADDGVMPQTVEAINHAK---AAN--VPIIVAINKMDKPEANPDRVMQEL 131 (178)
T ss_dssp CSSCCCCCEEEEEEETTCCCCHHHHHHHHHHG---GGS--CCEEEEEETTTSSCSCHHHHHHHH
T ss_pred HHHHhhCCEEEEEEECCCCCcHHHHHHHHHHH---hCC--CCEEEEEECccCCcCCHHHHHHHH
Confidence 24567889999999998666666555544332 222 689999999999875333444444
No 15
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.77 E-value=5.3e-17 Score=113.23 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=83.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH--HHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIV 95 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~ 95 (174)
....+|+++|++|+|||||+|++++...... ....+.|....... .+..+.++||||+........ .....+.
T Consensus 21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~-~~~~~~t~~~~~~~----~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ 95 (195)
T 3pqc_A 21 PLKGEVAFVGRSNVGKSSLLNALFNRKIAFV-SKTPGKTRSINFYL----VNSKYYFVDLPGYGYAKVSKKERMLWKRLV 95 (195)
T ss_dssp CTTCEEEEEEBTTSSHHHHHHHHHTSCCSCC-CSSCCCCCCEEEEE----ETTTEEEEECCCBSSSCCCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHcCccccc-cCCCCCccCeEEEE----ECCcEEEEECCCCccccCChhhHHHHHHHH
Confidence 3457999999999999999999999863222 12223333322211 345688999999876433221 1122233
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.........+|++++|+|+++.........++++... ..|+++|+||+|+...
T Consensus 96 ~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 96 EDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSL-----NIPFTIVLTKMDKVKM 148 (195)
T ss_dssp HHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCG
T ss_pred HHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHc-----CCCEEEEEEChhcCCh
Confidence 3333344677999999999877777777766666654 2699999999999764
No 16
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.77 E-value=3.7e-18 Score=116.69 Aligned_cols=118 Identities=14% Similarity=0.138 Sum_probs=75.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|++|+|||||+|++++........ ...+.......... ++ ..+.++||||..+ +...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 71 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHI--TTLGASFLTKKLNI-GGKRVNLAIWDTAGQER-----------FHAL 71 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHCCCCSSCC--CCCSCEEEEEEEES-SSCEEEEEEEECCCC-----------------
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCCCCcCCC--CccceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------hhhh
Confidence 4799999999999999999999765432211 11222222222333 22 3678999999765 3334
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...++..+|++++|+|.++..+... ..+++.+....... .|+++|+||+|+...
T Consensus 72 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 72 GPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKE 126 (170)
T ss_dssp -CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGG
T ss_pred HHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccc
Confidence 4556788999999999985433222 45555665554333 689999999999753
No 17
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.75 E-value=5.2e-18 Score=117.12 Aligned_cols=121 Identities=22% Similarity=0.196 Sum_probs=77.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
....+|+++|++|+|||||+|++++...........+.+ .......+.. ...+.++||||... +..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~ 76 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA--FFSQTLAVNDATVKFEIWDTAGQER-----------YHS 76 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCS--EEEEEEEETTEEEEEEEEECCCSGG-----------GGG
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeE--EEEEEEEECCEEEEEEEEeCCCChh-----------hhh
Confidence 334789999999999999999999876432221122222 2222233311 24789999999765 222
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+...
T Consensus 77 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 77 LAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNP--NMVMALAGNKSDLLDA 132 (181)
T ss_dssp GTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred hhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCccccc
Confidence 23345677899999999985433222 4555555554322 2689999999999754
No 18
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.75 E-value=2.7e-18 Score=118.19 Aligned_cols=120 Identities=16% Similarity=0.167 Sum_probs=76.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
...+|+++|.+|+|||||+|.+++...........+.+. ........ ....+.++||||..+. ...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~~~~~~~~~l~Dt~G~~~~-----------~~~ 80 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEF--GTRIIEVSGQKIKLQIWDTAGQERF-----------RAV 80 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCE--EEEEEEETTEEEEEEEEECTTGGGT-----------CHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEE--EEEEEEECCeEEEEEEEECCCChHh-----------hhh
Confidence 358999999999999999999998764322111112122 22222231 1246899999997652 222
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+..+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+...
T Consensus 81 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 81 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNP--NTVIILIGNKADLEAQ 135 (179)
T ss_dssp HHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred HHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECcccccc
Confidence 3334556799999999985433222 4555555554322 2689999999999653
No 19
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.75 E-value=5.8e-18 Score=116.72 Aligned_cols=120 Identities=21% Similarity=0.202 Sum_probs=79.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 94 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~ 94 (174)
.....+|+++|++|+|||||+|+|++...... .....+.........+ .+ ..+.++||||.....
T Consensus 6 ~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~---------- 72 (181)
T 3tw8_B 6 YDHLFKLLIIGDSGVGKSSLLLRFADNTFSGS--YITTIGVDFKIRTVEI-NGEKVKLQIWDTAGQERFR---------- 72 (181)
T ss_dssp CCEEEEEEEECCTTSCHHHHHHHHCSCC---C--CTTTBSEEEEEEEEEE-TTEEEEEEEEEETTGGGCS----------
T ss_pred cCcceEEEEECCCCCCHHHHHHHHhcCCCCCc--cCCCceeEEEEEEEEE-CCEEEEEEEEcCCCchhhh----------
Confidence 34458999999999999999999998764322 2233344444444444 44 468999999966532
Q ss_pred HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......+..+|++++|+|++++.+... ..++..+.... ...|+++|+||+|+...
T Consensus 73 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 73 -TITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC---DDVCRILVGNKNDDPER 128 (181)
T ss_dssp -SCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---TTSEEEEEEECTTCGGG
T ss_pred -hhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECCCCchh
Confidence 223346778899999999985432222 33444444432 23689999999998654
No 20
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.75 E-value=3.2e-18 Score=116.87 Aligned_cols=120 Identities=17% Similarity=0.110 Sum_probs=77.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
+..+|+++|++|+|||||+|++++...........+.+ .......+. ....+.++||||+.+ +...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~Dt~G~~~-----------~~~~ 71 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGAS--FMTKTVQYQNELHKFLIWDTAGLER-----------FRAL 71 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEE--EEEEEEEETTEEEEEEEEEECCSGG-----------GGGG
T ss_pred cceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEE--EEEEEEEECCeEEEEEEEcCCCchh-----------hhcc
Confidence 34799999999999999999999876432211122222 222223331 124688999999864 2223
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+..+|++++|+|.+++.+... ..+++.+....... .|+++|.||+|+...
T Consensus 72 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 72 APMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDV 126 (170)
T ss_dssp THHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGG
T ss_pred cHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccccc
Confidence 3345677899999999985433333 45556665542222 589999999999753
No 21
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.75 E-value=2e-17 Score=114.70 Aligned_cols=119 Identities=16% Similarity=0.145 Sum_probs=79.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
....+|+++|++|+|||||+|.+++...... .....+.......... .+ ..+.++||||..+ +.
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~ 73 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDD--SNHTIGVEFGSKIINV-GGKYVKLQIWDTAGQER-----------FR 73 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCSEEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCccceEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HH
Confidence 3458999999999999999999997664322 1122222222333333 33 4789999999765 34
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
..+...+..+|++++|+|.+++.+... ..++..+...... ..|+++|+||+|+..
T Consensus 74 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~ 129 (186)
T 2bme_A 74 SVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ--NIVIILCGNKKDLDA 129 (186)
T ss_dssp HHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred HHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECccccc
Confidence 455667889999999999985332222 3455555554322 368999999999964
No 22
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=3.6e-18 Score=119.49 Aligned_cols=119 Identities=18% Similarity=0.116 Sum_probs=76.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
+..+|+++|++|+|||||+|++++...........+.+.. ....... ....+.++||||..+. ...
T Consensus 22 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~~ 88 (192)
T 2fg5_A 22 RELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFM--TKTVPCGNELHKFLIWDTAGQERF-----------HSL 88 (192)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEE--EEEEECSSSEEEEEEEEECCSGGG-----------GGG
T ss_pred CceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEE--EEEEEeCCEEEEEEEEcCCCchhh-----------Hhh
Confidence 3479999999999999999999987643221122222222 2222221 2347899999997652 222
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
....+..+|++++|+|.++..+... ..++..+.+.... ..|+++|+||+|+..
T Consensus 89 ~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~--~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 89 APMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPE--NIVMAIAGNKCDLSD 142 (192)
T ss_dssp THHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCT--TCEEEEEEECGGGGG
T ss_pred hHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECccccc
Confidence 3345667899999999985433232 4555555554322 269999999999974
No 23
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.75 E-value=2.9e-18 Score=117.04 Aligned_cols=118 Identities=19% Similarity=0.170 Sum_probs=76.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|++|+|||||+|++++........ ...+.......... .+ ..+.++||||..+ +...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~-----------~~~~ 68 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKE--PTIGAAFLTQRVTI-NEHTVKFEIWDTAGQER-----------FASL 68 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCC--CCSSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GGGG
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCCCCCCCC--CccceeEEEEEEEE-CCEEEEEEEEECCCChh-----------hhhh
Confidence 4789999999999999999999876432211 12222222223333 32 3689999999764 2222
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+...
T Consensus 69 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 69 APXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGS
T ss_pred hhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccc
Confidence 3345577899999999985433322 34555555543222 689999999999754
No 24
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.75 E-value=1.4e-17 Score=113.85 Aligned_cols=116 Identities=16% Similarity=0.081 Sum_probs=79.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|++|+|||||+|++++..... ..+|.........+ +...+.++||||... +...+.
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~~~Dt~G~~~-----------~~~~~~ 69 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVGEVVT-----TIPTIGFNVETVTY-KNLKFQVWDLGGLTS-----------IRPYWR 69 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHSSCCC-----CCCCSSEEEEEEEE-TTEEEEEEEECCCGG-----------GGGGGG
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCCCCC-----cCCcCccceEEEEE-CCEEEEEEECCCChh-----------hhHHHH
Confidence 4899999999999999999998765321 12233334444555 678899999999875 333345
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+...
T Consensus 70 ~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 70 CYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEE-LRKAILVVFANKQDMEQA 123 (171)
T ss_dssp GGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred HHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchh-hCCCEEEEEEECCCCcCC
Confidence 57788999999999985543333 233332222111 123699999999999765
No 25
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.75 E-value=3.8e-18 Score=116.43 Aligned_cols=119 Identities=18% Similarity=0.152 Sum_probs=75.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..+|+++|++|+|||||+|++++.......... .+........... ....+.++||||..+ +....
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~D~~G~~~-----------~~~~~ 72 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQEST--IGAAFLTQTVCLDDTTVKFEIWDTAGQER-----------YHSLA 72 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCC--SSEEEEEEEEEETTEEEEEEEEEECCSGG-----------GGGGH
T ss_pred eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCc--cceEEEEEEEEECCEEEEEEEEeCCCcHH-----------hhhhh
Confidence 478999999999999999999976543221111 2222222223331 134689999999765 22223
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.+++.+... ..++..+....... .|+++|.||+|+...
T Consensus 73 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 73 PMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANK 126 (170)
T ss_dssp HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccc
Confidence 345677899999999985432222 34444454432222 588999999998653
No 26
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.75 E-value=1.3e-17 Score=117.51 Aligned_cols=119 Identities=11% Similarity=0.058 Sum_probs=77.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..+|+++|++|+|||||+|.+++........... +........... ....+.+|||||... +...+
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~~~~ 74 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTIYRNDKRIKLQIWDTAGLER-----------YRTIT 74 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCC--SEEEEEEEEEETTEEEEEEEEEECCSGG-----------GHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcc--ceeEEEEEEEECCeEEEEEEEECCCchh-----------hcchH
Confidence 4799999999999999999999876432211111 222222233331 134789999999865 33445
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+...
T Consensus 75 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~--~~~piilv~nK~Dl~~~ 128 (203)
T 1zbd_A 75 TAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSW--DNAQVLLVGNKCDMEDE 128 (203)
T ss_dssp HTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--SSCEEEEEEECTTCTTS
T ss_pred HHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC--CCCCEEEEEECcccCcc
Confidence 566778899999999985432222 345555544321 23689999999999764
No 27
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.75 E-value=1.7e-17 Score=116.05 Aligned_cols=121 Identities=20% Similarity=0.213 Sum_probs=80.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
....+|+++|++|+|||||+|+|++...... .....+.........+ .+ ..+.++||||.....
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~----------- 79 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTES--YISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFR----------- 79 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHSCCCSC--CCCCSSEEEEEEEEEE-TTEEEEEEEEEECCSGGGC-----------
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEE-CCEEEEEEEEECCCcHhhh-----------
Confidence 3457999999999999999999998664322 2233333344444444 33 468999999976522
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
.....++..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+....
T Consensus 80 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~ 137 (196)
T 3tkl_A 80 TITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKK 137 (196)
T ss_dssp TTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTC
T ss_pred hhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccccccc
Confidence 222345577899999999985332222 45555565543323 6899999999997653
No 28
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=3e-17 Score=113.16 Aligned_cols=120 Identities=18% Similarity=0.151 Sum_probs=75.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+..+|+++|++|+|||||+|++++....... .....+.......... .+ ..+.++||||... +..
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-~~~t~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~-----------~~~ 75 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDGAFLAGT-FISTVGIDFRNKVLDV-DGVKVKLQMWDTAGQER-----------FRS 75 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCCC-CCCCCSCEEEEEEEEE-TTEEEEEEEEECCCC----------------
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCCCC-cCCceeeEEEEEEEEE-CCEEEEEEEEeCCCcHH-----------HHH
Confidence 3479999999999999999999987643211 1122222222222233 33 3689999999765 333
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+...+..+|++++|+|++++.+... ..++..+...... ..|+++|+||+|+...
T Consensus 76 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 131 (180)
T 2g6b_A 76 VTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQH--DVALMLLGNKVDSAHE 131 (180)
T ss_dssp ---CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECCSTTSC
T ss_pred HHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC--CCcEEEEEECcccCcc
Confidence 44556778899999999985433222 4555555554322 2699999999999764
No 29
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.74 E-value=7.5e-17 Score=115.80 Aligned_cols=131 Identities=16% Similarity=0.106 Sum_probs=78.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
....+|+++|.+|+|||||+|+|++.... .. .....|.........+ ....+.+|||||+.+......... ....
T Consensus 27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~~~~--~~~~ 101 (228)
T 2qu8_A 27 PHKKTIILSGAPNVGKSSFMNIVSRANVD-VQ-SYSFTTKNLYVGHFDH-KLNKYQIIDTPGLLDRAFENRNTI--EMTT 101 (228)
T ss_dssp TTSEEEEEECSTTSSHHHHHHHHTTTCEE-EE-CC-----CEEEEEEEE-TTEEEEEEECTTTTTSCGGGCCHH--HHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCCcceeeeeeeeec-CCCeEEEEECCCCcCcccchhhhH--HHHH
Confidence 34589999999999999999999987643 21 1223344444444444 567899999999975321111000 0111
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+......+|++++|+|++++.+.....+...+..........|+++|+||+|+...
T Consensus 102 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 102 ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 22234667999999999865443323333333333222113699999999999764
No 30
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.74 E-value=1.4e-17 Score=124.48 Aligned_cols=123 Identities=19% Similarity=0.227 Sum_probs=83.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCC-CCCCChHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFVGKEIVKC 97 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~-~~~~~~~~~~~~~~~~ 97 (174)
+...++++|++|+|||||+|+|++....... ...+.|.........+ .+..+.++||||+. .. .....+.+...
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~~~i~s-~~~~tTr~~~~gi~~~-~~~~i~~iDTpG~~~~~---~~~l~~~~~~~ 81 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQKISITS-RKAQTTRHRIVGIHTE-GAYQAIYVDTPGLHMEE---KRAINRLMNKA 81 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCSEEECC-CCSSCCSSCEEEEEEE-TTEEEEEESSSSCCHHH---HHHHHHHHTCC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCCccccC-CCCCcceeeEEEEEEE-CCeeEEEEECcCCCccc---hhhHHHHHHHH
Confidence 4478999999999999999999998643221 1122333222222333 66789999999987 21 12233344444
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+..++..+|++++|+|+++ ++..+...++.+.. ...|+++++||+|+..
T Consensus 82 ~~~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~-----~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 82 ASSSIGDVELVIFVVEGTR-WTPDDEMVLNKLRE-----GKAPVILAVNKVDNVQ 130 (301)
T ss_dssp TTSCCCCEEEEEEEEETTC-CCHHHHHHHHHHHS-----SSSCEEEEEESTTTCC
T ss_pred HHHHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHh-----cCCCEEEEEECcccCc
Confidence 5567788999999999985 88777655554432 1269999999999976
No 31
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.74 E-value=4.3e-17 Score=120.30 Aligned_cols=130 Identities=20% Similarity=0.266 Sum_probs=79.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccC----CCCcceeeEEEEEEEe-CC--cEEEEEeCCCCCCCCCCh---
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS----SSGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSAGS--- 87 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~----~~~~t~~~~~~~~~~~-~~--~~~~~iDtpG~~~~~~~~--- 87 (174)
+...+|+++|.+|+|||||+|+|++...+..... ....|........... ++ ..+.++||||+.++....
T Consensus 6 g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~ 85 (274)
T 3t5d_A 6 GFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCW 85 (274)
T ss_dssp -CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTT
T ss_pred ccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhH
Confidence 4458999999999999999999998776543210 0022222222323221 22 378999999997654322
Q ss_pred HHHH----HHHHHHHHh---------ccCCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 88 EFVG----KEIVKCIGM---------AKDGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 88 ~~~~----~~~~~~~~~---------~~~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+. .++...+.. ...++|+++++++.. .++...+..+++.+.. ..|+++|+||+|+...
T Consensus 86 ~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~------~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 86 QPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE------KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT------TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc------cCCEEEEEeccCCCCH
Confidence 2222 122222221 124578999999665 3678888887776655 2699999999999865
No 32
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.74 E-value=9.7e-18 Score=118.42 Aligned_cols=119 Identities=18% Similarity=0.190 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
...+|+++|++|+|||||+|+|++....... ....+.......+.+ .+ ..+.++||||..+...
T Consensus 7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~----------- 72 (206)
T 2bcg_Y 7 YLFKLLLIGNSGVGKSCLLLRFSDDTYTNDY--ISTIGVDFKIKTVEL-DGKTVKLQIWDTAGQERFRT----------- 72 (206)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHCCCCTTC--CCSSCCCEEEEEEEE-TTEEEEEEEECCTTTTTTTC-----------
T ss_pred cceEEEEECCCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEeCCChHHHHH-----------
Confidence 3479999999999999999999987643221 122222222333333 33 3689999999876322
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|.+++.+... ..++..+...... ..|+++|+||+|+...
T Consensus 73 ~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 128 (206)
T 2bcg_Y 73 ITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS--TVLKLLVGNKCDLKDK 128 (206)
T ss_dssp CCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEECTTCTTT
T ss_pred HHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCCCccc
Confidence 23346778899999999985433332 3455555554322 2689999999999764
No 33
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.74 E-value=3.7e-17 Score=114.52 Aligned_cols=124 Identities=14% Similarity=0.072 Sum_probs=80.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEI 94 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 94 (174)
.+.....+|+++|.+|+|||||++.+++....... ...|.......+.. ....+.+|||||... +
T Consensus 12 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~ 76 (199)
T 4bas_A 12 GQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKH---ITATVGYNVETFEK-GRVAFTVFDMGGAKK-----------F 76 (199)
T ss_dssp ----CEEEEEEECCTTSCHHHHHHHHSCCC----C---CCCCSSEEEEEEEE-TTEEEEEEEECCSGG-----------G
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccc---cccccceeEEEEEe-CCEEEEEEECCCCHh-----------H
Confidence 34445689999999999999999999987743311 12233333344444 678899999999875 3
Q ss_pred HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhh------hcCcEEEEEeCcCCCCC
Q 030624 95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK------IFDYMIVVFTGGDELED 153 (174)
Q Consensus 95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~------~~~~~~iv~tk~D~~~~ 153 (174)
...+..++..+|++++|+|+++.-+... ..++..+....... ...|+++|+||+|+...
T Consensus 77 ~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 77 RGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp GGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 3444567789999999999985543333 34444333321110 13699999999999865
No 34
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.74 E-value=5.4e-17 Score=110.28 Aligned_cols=114 Identities=13% Similarity=0.046 Sum_probs=76.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+|+++|++|+|||||+|++++...... .+|.........+ .+..+.++||||..+ +.......
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~~~~ 64 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDK-----------IRPLWRHY 64 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHCSSCC-----CCCSSCCEEEEEC-SSCEEEEEECCCCGG-----------GHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcCCcCcc-----cCcCceeEEEEEE-CCEEEEEEEcCCChh-----------hHHHHHHH
Confidence 789999999999999999987653211 1232233334444 667899999999865 33444556
Q ss_pred cCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+..+|++++|+|.+++-+... ..++..+.... .....|+++|+||+|+...
T Consensus 65 ~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 65 FQNTQGLIFVVDSNDRERVNEAREELMRMLAED-ELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp TTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTCEEEEEEECTTSTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHhch-hhcCCeEEEEEECcCCcCC
Confidence 788999999999985433222 23333332211 1123699999999999764
No 35
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.74 E-value=5.6e-18 Score=118.56 Aligned_cols=120 Identities=13% Similarity=0.189 Sum_probs=75.1
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
....+|+++|.+|+|||||+|+|++...... .....+.........+ ++ ..+.++||||... +.
T Consensus 24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~ 89 (192)
T 2il1_A 24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEA--CKSTVGVDFKIKTVEL-RGKKIRLQIWDTAGQER-----------FN 89 (192)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHCC----------CCTTEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcC--CCCccceeEEEEEEEE-CCeEEEEEEEeCCCcHH-----------HH
Confidence 3457899999999999999999998764322 1222233333334444 33 3689999999764 22
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......+..+|++++|+|.++..+... ..+++.+....... .|+++|+||+|+...
T Consensus 90 ~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 90 SITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETD 146 (192)
T ss_dssp HHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGG
T ss_pred HHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccc
Confidence 223334456699999999985433333 44555555543222 689999999998653
No 36
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.73 E-value=1.1e-17 Score=116.58 Aligned_cols=119 Identities=13% Similarity=0.084 Sum_probs=77.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..+|+++|++|+|||||+|++++........... +........... ....+.++||||...... ..
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~~ 88 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTV--GIDFKVKTVYRHDKRIKLQIWDTAGQERYRT-----------IT 88 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCC--CCEEEEEEEEETTEEEEEEEEECCSCCSSCC-----------SG
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCce--eEEEEEEEEEECCeEEEEEEEeCCCcHHHhh-----------hH
Confidence 4799999999999999999999876432211112 222222222221 134689999999876322 23
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.+++.+... ..++..+...... ..|+++|+||+|+...
T Consensus 89 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 89 TAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWD--NAQVILVGNKCDLEDE 142 (189)
T ss_dssp GGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGGG
T ss_pred HHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccccc
Confidence 456778899999999985332222 3455555554212 2699999999999753
No 37
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.73 E-value=5.3e-18 Score=118.56 Aligned_cols=120 Identities=18% Similarity=0.160 Sum_probs=75.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
...+|+++|++|+|||||+|+|++...........+ ........... ....+.++||||..+.. ..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~ 90 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG--VEFSTRTVMLGTAAVKAQIWDTAGLERYR-----------AI 90 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSS--EEEEEEEEEETTEEEEEEEEEESCCCTTC-----------TT
T ss_pred cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccc--eeEEEEEEEECCEEEEEEEEeCCCchhhh-----------hh
Confidence 347899999999999999999998764322111112 11122222221 23467899999987632 12
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+..+|++++|+|++++.+... ..++..+..... ...|+++|+||+|+...
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~--~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAE--ATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSC--TTCEEEEEEECGGGGGG
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC--CCCeEEEEEECCCcccc
Confidence 2334567899999999985332222 344444443321 23689999999999753
No 38
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=4.4e-18 Score=133.21 Aligned_cols=123 Identities=23% Similarity=0.186 Sum_probs=78.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+|+++|.+|+|||||+|.|++...... ....+.|.........+ .+..+.+|||||+.... ......+...+..
T Consensus 4 ~~V~ivG~~nvGKStL~n~l~~~~~~~v-~~~~g~T~d~~~~~~~~-~~~~~~l~DT~G~~~~~---~~~~~~~~~~~~~ 78 (436)
T 2hjg_A 4 PVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIGD---EPFLAQIRQQAEI 78 (436)
T ss_dssp CEEEEECSTTSSHHHHHHHHEEEECC------------CEEEECTT-CSSCCEEEC------------CHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCceee-cCCCCCccceEEEEEEE-CCceEEEEECCCCCCcc---hhHHHHHHHHHHH
Confidence 6899999999999999999998754222 22344555544444445 56789999999997432 1244556666666
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
++..+|++++|+|+.++++..+..+.+.++. ...|+++|+||+|+...
T Consensus 79 ~~~~ad~il~vvD~~~~~~~~d~~~~~~l~~-----~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 79 AMDEADVIIFMVNGREGVTAADEEVAKILYR-----TKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp HHHHCSEEEEEEETTTCSCHHHHHHHHHHTT-----CCSCEEEEEECCCC---
T ss_pred HHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH-----cCCCEEEEEECccCccc
Confidence 7778899999999988888887766655543 12699999999998754
No 39
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.73 E-value=6.8e-18 Score=132.12 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=82.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
...+++++|.+|+|||||+|+|++....... ...+.|.......+.+ ++..+.+|||||+.+.....+...+......
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred cCcEEEEEcCCCCCHHHHHHHHhCCCceeec-CCCCceeeeeEEEEEE-CCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence 3489999999999999999999987643222 2233444444444555 6778999999998653321111111000001
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
..++..+|++++|+|++++.+..+..++..+.+. . .++++|+||+|+....
T Consensus 252 ~~~~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~~~~ 302 (436)
T 2hjg_A 252 LKAIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA---G--KAVVIVVNKWDAVDKD 302 (436)
T ss_dssp HHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSCCC
T ss_pred HHHHHhCCEEEEEEcCCcCCcHHHHHHHHHHHHc---C--CcEEEEEECccCCCcc
Confidence 1234456999999999988888887776665542 2 6899999999998754
No 40
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.73 E-value=2.8e-18 Score=135.03 Aligned_cols=125 Identities=23% Similarity=0.202 Sum_probs=81.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..++|+++|.+|+|||||+|+|++...... ....+.|.........+ .+..+.+|||||+... .+....++...+
T Consensus 22 ~~~~V~lvG~~nvGKSTL~n~l~~~~~~~v-~~~~g~t~~~~~~~~~~-~~~~~~liDT~G~~~~---~~~~~~~~~~~~ 96 (456)
T 4dcu_A 22 GKPVVAIVGRPNVGKSTIFNRIAGERISIV-EDTPGVTRDRIYSSAEW-LNYDFNLIDTGGIDIG---DEPFLAQIRQQA 96 (456)
T ss_dssp -CCEEEEECSSSSSHHHHHHHHEEEEEC------------CEEEECTT-CSSCCEEECCCC---------CCHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCccc-CCCCCcceeEEEEEEEE-CCceEEEEECCCCCCc---chHHHHHHHHHH
Confidence 347899999999999999999999764322 23344555555555545 5678999999998742 223345566666
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++..+|++|+|+|..++++..+..+.+.+++. ..|+++|+||+|+...
T Consensus 97 ~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~~-----~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 97 EIAMDEADVIIFMVNGREGVTAADEEVAKILYRT-----KKPVVLAVNKLDNTEM 146 (456)
T ss_dssp HHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTTC-----CSCEEEEEECC-----
T ss_pred HhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHHc-----CCCEEEEEECccchhh
Confidence 6677788999999999878988888777766542 2699999999998653
No 41
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.73 E-value=4e-17 Score=112.26 Aligned_cols=120 Identities=18% Similarity=0.070 Sum_probs=78.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
...+|+++|++|+|||||+|++++....... ....+.........+ ++ ..+.++||||... +..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~~ 71 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQL--FHTIGVEFLNKDLEV-DGHFVTMQIWDTAGQER-----------FRS 71 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHSCCCC------CCSEEEEEEEEEE-TTEEEEEEEEECCCCGG-----------GHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCceeeeEEEEEEEE-CCEEEEEEEEeCCCchh-----------hhh
Confidence 3578999999999999999999976532221 111222222233333 33 3789999999765 344
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE 152 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~ 152 (174)
.....+..+|++++|+|.++..+... ..+++.+...... ....|+++|+||+|+..
T Consensus 72 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 130 (177)
T 1wms_A 72 LRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE 130 (177)
T ss_dssp HHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS
T ss_pred hHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc
Confidence 55567888999999999985433222 4555666554431 02258999999999874
No 42
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.73 E-value=5.9e-18 Score=116.49 Aligned_cols=119 Identities=14% Similarity=0.126 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+..+|+++|++|+|||||+|++++...... .....+.........+ .+ ..+.++||||.... ..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~~ 78 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNT--YQATIGIDFLSKTMYL-EDRTVRLQLWDTAGQERF-----------RS 78 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGGG-----------GG
T ss_pred cceEEEEECCCCCCHHHHHHHHHcCCCCCC--CCCceeeEEEEEEEEE-CCeEEEEEEEECCCcHHH-----------HH
Confidence 447899999999999999999997653222 1222222333333333 33 36899999997652 12
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+...+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+...
T Consensus 79 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 79 LIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDK 134 (179)
T ss_dssp GSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGG
T ss_pred HHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCccccc
Confidence 22234456799999999984332222 45555555543323 689999999998754
No 43
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.73 E-value=6.4e-18 Score=118.84 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=71.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+..+|+++|++|+|||||+|++++...........+.+. ......+ ++ ..+.++||||..+. ..
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~--~~~~~~~-~~~~~~l~i~Dt~G~~~~-----------~~ 92 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDF--QMKTLIV-DGERTVLQLWDTAGQERF-----------RS 92 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHCCCC----------C--EEEEEEE-TTEEEEEEEEECTTCTTC-----------HH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCcccee--EEEEEEE-CCEEEEEEEEECCCCcch-----------hh
Confidence 358999999999999999999998653222111111111 1222223 32 45899999997752 22
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
.....+..+|++++|+|++++.+... ..+++.+....... .|+++|+||+|+.
T Consensus 93 ~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~ 146 (199)
T 2p5s_A 93 IAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIR 146 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGH
T ss_pred hHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccc
Confidence 22333445699999999985433332 45555555543222 6999999999986
No 44
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.73 E-value=2e-17 Score=114.15 Aligned_cols=122 Identities=13% Similarity=0.090 Sum_probs=72.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe--CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--DGQVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
....+|+++|++|+|||||+|.+++....... ....+.........+. ....+.++||||... +.
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~-----------~~ 72 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQY--KATIGADFLTKEVTVDGDKVATMQVWDTAGQER-----------FQ 72 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC-----CCCSCEEEEECCSSSCCEEEEEECCC-----------------
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhCcCCccc--CCccceEEEEEEEEEcCCcEEEEEEEECCCChH-----------hh
Confidence 34589999999999999999999986533221 1111122222233331 134689999999665 33
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELE 152 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~ 152 (174)
......+..+|++++|+|.+++.+... ..++..+...... ....|+++|+||+|+..
T Consensus 73 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 132 (182)
T 1ky3_A 73 SLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEE 132 (182)
T ss_dssp ----CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCG
T ss_pred hhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccc
Confidence 444567788999999999985432222 4555555554321 12369999999999854
No 45
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.73 E-value=1.4e-17 Score=116.12 Aligned_cols=120 Identities=15% Similarity=0.103 Sum_probs=77.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH-
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV- 95 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~- 95 (174)
+..+|+++|.+|+|||||+|++++....... ....+.........+ ++ ..+.++||||..+ +.
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~ 84 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAGRFPDRT--EATIGVDFRERAVDI-DGERIKIQLWDTAGQER-----------FRK 84 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCCSSC--CCCCSCCEEEEEEEE-TTEEEEEEEEECCCSHH-----------HHT
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECCCchh-----------hhh
Confidence 4589999999999999999999976543221 122222222233333 33 4789999999653 22
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....++..+|++++|+|+++..+... ..++..+..... ....|+++|+||+|+...
T Consensus 85 ~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 85 SMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL-ANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp TTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC-CSCCCEEEEEECTTCGGG
T ss_pred hhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence 233445678899999999985332222 445555555431 123689999999999653
No 46
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.73 E-value=6.4e-17 Score=109.98 Aligned_cols=119 Identities=19% Similarity=0.173 Sum_probs=73.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+..+|+++|++|+|||||+|++++....... .+.+.......... .+ ..+.++||||..+. ..
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~ 67 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDY---EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY-----------AA 67 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSCCCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCC---C-----------HH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhCccCCCC---CCCcceEEEEEEEE-CCEEEEEEEEECCCcchh-----------HH
Confidence 4589999999999999999999986632221 11111111222233 33 36889999997652 22
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....++..+|++++|+|.++.-+... ..++..+...... ...|+++|+||+|+...
T Consensus 68 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 68 IRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTSCEEEEEECGGGGGG
T ss_pred HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECcccccc
Confidence 22333445699999999984432222 4555555554321 13699999999998653
No 47
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.73 E-value=2.7e-17 Score=114.53 Aligned_cols=119 Identities=13% Similarity=0.009 Sum_probs=77.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeC-----------CcEEEEEeCCCCCCCCCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKD-----------GQVVNVIDTPGLFDFSAG 86 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~-----------~~~~~~iDtpG~~~~~~~ 86 (174)
...+|+++|++|+|||||+|++++........ ........ ...... . ...+.++||||...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~Dt~G~~~---- 82 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDGKFNSKFI--TTVGIDFREKRVVYR-ANGPDGAVGRGQRIHLQLWDTAGLER---- 82 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCCSCC--CCCSEEEEEEEEEEC-TTSCCCSSCCCEEEEEEEEEECCSGG----
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcCCCCcCcc--cccceeeeeEEEEEe-cCCcccccccCcEEEEEEEeCCCcHH----
Confidence 35899999999999999999999765322211 11111111 122222 2 23789999999865
Q ss_pred hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+.......+..+|++++|+|++++.+... ..++..+...... ...|+++|+||+|+..
T Consensus 83 -------~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~ 141 (195)
T 3bc1_A 83 -------FRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYS-ENPDIVLCGNKSDLED 141 (195)
T ss_dssp -------GHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSS-SSCCEEEEEECTTCGG
T ss_pred -------HHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccc
Confidence 34445567788999999999985433332 4555555543221 2368999999999975
No 48
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.73 E-value=4.8e-17 Score=113.42 Aligned_cols=120 Identities=14% Similarity=0.051 Sum_probs=79.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+..+|+++|.+|+|||||+|++++...+... ...|.......+.+ ++..+.++||||..+. ...+
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~-----------~~~~ 84 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSNAQSQN---ILPTIGFSIEKFKS-SSLSFTVFDMSGQGRY-----------RNLW 84 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGGGCCSS---CCCCSSEEEEEEEC-SSCEEEEEEECCSTTT-----------GGGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCC---cCCccceeEEEEEE-CCEEEEEEECCCCHHH-----------HHHH
Confidence 4589999999999999999999987632221 22333344444555 5688999999998762 2333
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh-hhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+...
T Consensus 85 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 141 (190)
T 2h57_A 85 EHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA 141 (190)
T ss_dssp GGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence 456678899999999985322222 2333333332111 023699999999999764
No 49
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.73 E-value=7.6e-17 Score=112.68 Aligned_cols=125 Identities=10% Similarity=0.014 Sum_probs=77.7
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 87 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~ 87 (174)
.+++++..+. .+|+++|++|+|||||++.+++..... ...|.......+.+ ++..+.++||||....
T Consensus 14 l~~~~~~~~~---~ki~~vG~~~vGKSsli~~l~~~~~~~-----~~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~---- 80 (190)
T 1m2o_B 14 LASLGLWNKH---GKLLFLGLDNAGKTTLLHMLKNDRLAT-----LQPTWHPTSEELAI-GNIKFTTFDLGGHIQA---- 80 (190)
T ss_dssp -------------CEEEEEESTTSSHHHHHHHHHHSCCCC-----CCCCCSCEEEEEEE-TTEEEEEEECCCSGGG----
T ss_pred HHHhhccCCc---cEEEEECCCCCCHHHHHHHHhcCCCCc-----cccCCCCCeEEEEE-CCEEEEEEECCCCHHH----
Confidence 3444444433 689999999999999999999865321 11222223344445 6688999999998762
Q ss_pred HHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 88 EFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......++..+|++++|+|.+++-+... ..++..+.+... ....|+++|.||+|+...
T Consensus 81 -------~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 139 (190)
T 1m2o_B 81 -------RRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAE-LKDVPFVILGNKIDAPNA 139 (190)
T ss_dssp -------TTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC
T ss_pred -------HHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchh-hcCCCEEEEEECCCCcCC
Confidence 2233456778999999999985543333 334433333211 123699999999999763
No 50
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.72 E-value=6.2e-17 Score=112.81 Aligned_cols=117 Identities=17% Similarity=0.073 Sum_probs=77.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|++|+|||||+|.+++...... ...|.......... ....+.++||||..+ +...+.
T Consensus 22 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~----~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~~ 85 (188)
T 1zd9_A 22 EMELTLVGLQYSGKTTFVNVIASGQFNED----MIPTVGFNMRKITK-GNVTIKLWDIGGQPR-----------FRSMWE 85 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSCCCCS----CCCCCSEEEEEEEE-TTEEEEEEEECCSHH-----------HHTTHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHcCCCCCc----cCCCCceeEEEEEe-CCEEEEEEECCCCHh-----------HHHHHH
Confidence 47899999999999999999997654311 12233333334444 677899999999764 333344
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+...
T Consensus 86 ~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 86 RYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQ-LQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp HHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCCEEEEEECTTSTTC
T ss_pred HHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcc-cCCCCEEEEEECCCCccC
Confidence 45678899999999985433222 233333322111 123689999999999765
No 51
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.8e-17 Score=112.27 Aligned_cols=119 Identities=23% Similarity=0.193 Sum_probs=73.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|++|+|||||+|++++...........+.+. ...... .. ..+.++||||..+. ...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~~~Dt~G~~~~-----------~~~ 67 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY---RQVISC-DKSICTLQITDTTGSHQF-----------PAM 67 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE---EEEEEE-TTEEEEEEEEECCSCSSC-----------HHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccE---EEEEEE-CCEEEEEEEEECCCchhh-----------HHH
Confidence 47899999999999999999998654322111111111 111222 22 35799999998762 122
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+..+|++++|+|.+++.+... ..++..+.+........|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 68 QRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred HHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 2223345699999999984432222 4555555554332223689999999998653
No 52
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.72 E-value=2.8e-17 Score=116.02 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=79.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|++|+|||||+|++++...... .....+.......+.+ ++ ..+.++||||... +...
T Consensus 26 ~~ki~lvG~~~vGKSsLi~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~~ 91 (201)
T 2ew1_A 26 LFKIVLIGNAGVGKTCLVRRFTQGLFPPG--QGATIGVDFMIKTVEI-NGEKVKLQIWDTAGQER-----------FRSI 91 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCTT--CCCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCC--CCCccceeEEEEEEEE-CCEEEEEEEEECCCcHH-----------HHHH
Confidence 47999999999999999999987653211 1122222222333334 33 3689999999764 4445
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
...++..+|++++|+|.+++.+... ..++..+....... .|+++|+||+|+..
T Consensus 92 ~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~ 145 (201)
T 2ew1_A 92 TQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAE 145 (201)
T ss_dssp HGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGG
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence 5667889999999999985432222 45666565543222 68999999999974
No 53
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.72 E-value=3e-17 Score=113.73 Aligned_cols=117 Identities=15% Similarity=0.110 Sum_probs=78.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+..+|+++|.+|+|||||+|++++....... ...+ .....+.+ ++..+.++||||..+ +...+
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~-~t~~----~~~~~~~~-~~~~~~i~Dt~G~~~-----------~~~~~ 82 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-PTIG----SNVEEIVI-NNTRFLMWDIGGQES-----------LRSSW 82 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTSCEEEE-CCSS----SSCEEEEE-TTEEEEEEEESSSGG-----------GTCGG
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCCCCccC-CcCc----eeeEEEEE-CCEEEEEEECCCCHh-----------HHHHH
Confidence 4589999999999999999999987642111 1122 22233444 678899999999865 22233
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.++..+... ..++..+..... ....|+++|+||+|+...
T Consensus 83 ~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 137 (181)
T 2h17_A 83 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC 137 (181)
T ss_dssp GGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChh-hCCCeEEEEEECCCcccC
Confidence 456788999999999986544333 333333332211 123689999999999764
No 54
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.72 E-value=8.1e-17 Score=111.48 Aligned_cols=121 Identities=20% Similarity=0.168 Sum_probs=75.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 94 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~ 94 (174)
..+..+|+++|++|+|||||+|+|++....... ...+.......... .+ ..+.++||||..+.
T Consensus 15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----------- 79 (187)
T 2a9k_A 15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY---EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY----------- 79 (187)
T ss_dssp --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC-----------
T ss_pred CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcC---CCccceEEEEEEEE-CCEEEEEEEEECCCCccc-----------
Confidence 344589999999999999999999986632221 11111112222333 33 36889999998762
Q ss_pred HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......++..+|++++|+|.++.-.... ..++..+...... ...|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 80 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCC-TTCCEEEEEECGGGGGG
T ss_pred HHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECcccccc
Confidence 1222233445699999999984332222 4555555554321 13689999999998653
No 55
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.72 E-value=2.2e-17 Score=129.93 Aligned_cols=131 Identities=18% Similarity=0.227 Sum_probs=86.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC----hHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG----SEFVGKE 93 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~----~~~~~~~ 93 (174)
....+++++|.+|+|||||+|++++....... ...+.|.......+.+ ++..+.+|||||+.+.... .......
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-C------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred cccceeEEecCCCCCHHHHHHHHhCCCccccC-CCCCeEEEEEEEEEEE-CCceEEEEECCCCCcCcccchHHHHHHHHH
Confidence 34589999999999999999999987533222 2233344433344445 6778999999997653221 1111111
Q ss_pred HHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHH
Q 030624 94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE 159 (174)
Q Consensus 94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~ 159 (174)
... ++..+|++++|+|+++++...+..++..+.+.. .|+++|+||+|+........+
T Consensus 271 ~~~----~~~~ad~~llviD~~~~~~~~~~~~~~~~~~~~-----~~~ilv~NK~Dl~~~~~~~~~ 327 (456)
T 4dcu_A 271 ALK----AIDRSEVVAVVLDGEEGIIEQDKRIAGYAHEAG-----KAVVIVVNKWDAVDKDESTMK 327 (456)
T ss_dssp HHH----HHHHCSEEEEEEETTTCCCHHHHHHHHHHHHTT-----CEEEEEEECGGGSCCCSSHHH
T ss_pred HHH----HHhhCCEEEEEEeCCCCcCHHHHHHHHHHHHcC-----CCEEEEEEChhcCCCchHHHH
Confidence 122 344569999999999888888888887776632 689999999999865433333
No 56
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.72 E-value=2.5e-17 Score=114.03 Aligned_cols=118 Identities=14% Similarity=0.131 Sum_probs=57.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|++|+|||||+|.+++...... .....+.........+ ++ ..+.++||||... +...
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~~~~~~~--~~~t~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~-----------~~~~ 73 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSEDAFNST--FISTIGIDFKIRTIEL-DGKRIKLQIWDTAGQER-----------FRTI 73 (183)
T ss_dssp EEEEEEECCCCC----------------C--HHHHHCEEEEEEEEEE-TTEEEEEEEEEC--------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCCC--CCCcccceeEEEEEEE-CCEEEEEEEEcCCCChh-----------hhhh
Confidence 48999999999999999999997653211 1111122222223333 33 5689999999765 3334
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...++..+|++++|+|.+++.+... ..++..+...... ..|+++|+||+|+...
T Consensus 74 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~nK~Dl~~~ 128 (183)
T 2fu5_C 74 TTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASA--DVEKMILGNKCDVNDK 128 (183)
T ss_dssp CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT--TCEEEEEEEC--CCSC
T ss_pred HHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECccCCcc
Confidence 4557788999999999985432222 3455555543222 2699999999999754
No 57
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.72 E-value=2.3e-17 Score=114.03 Aligned_cols=118 Identities=20% Similarity=0.201 Sum_probs=74.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
+..+|+++|++|+|||||+|.+++....... ..|.... ...... ++ ..+.++||||..+...
T Consensus 5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~~---------- 69 (181)
T 3t5g_A 5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSY----DPTIENTFTKLITV-NGQEYHLQLVDTAGQDEYSI---------- 69 (181)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSCC----CTTCCEEEEEEEEE-TTEEEEEEEEECCCCCTTCC----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCC----CCCccccEEEEEEE-CCEEEEEEEEeCCCchhhhH----------
Confidence 4589999999999999999999965532111 1122222 222223 33 3568999999887432
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|.++.-+... ..++..+.+.... ...|+++|+||+|+...
T Consensus 70 -~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 126 (181)
T 3t5g_A 70 -FPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGK-VQIPIMLVGNKKDLHME 126 (181)
T ss_dssp -CCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-----CCEEEEEECTTCTTT
T ss_pred -HHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccchhc
Confidence 22345678899999999984332222 3444444443322 22689999999998654
No 58
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.72 E-value=2.7e-17 Score=115.74 Aligned_cols=136 Identities=15% Similarity=0.116 Sum_probs=80.6
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCC
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG 86 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~ 86 (174)
+.++++++.+. .+|+++|++|+|||||++++++...... ..|.......+.+ ++..+.++||||.....
T Consensus 15 ~l~~~~~~~~~---~ki~lvG~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-- 83 (198)
T 1f6b_A 15 VLQFLGLYKKT---GKLVFLGLDNAGKTTLLHMLKDDRLGQH-----VPTLHPTSEELTI-AGMTFTTFDLGGHIQAR-- 83 (198)
T ss_dssp HHHHHTCTTCC---EEEEEEEETTSSHHHHHHHHSCC-----------CCCCCSCEEEEE-TTEEEEEEEECC----C--
T ss_pred HHHHhhccCCC---cEEEEECCCCCCHHHHHHHHhcCCCCcc-----CCCCCceeEEEEE-CCEEEEEEECCCcHhhH--
Confidence 33444555443 6899999999999999999998653211 1122222334444 56789999999987632
Q ss_pred hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC-ChhhHHHHhc
Q 030624 87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED-NDETLEDYLG 163 (174)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~-~~~~~~~~~~ 163 (174)
..+...+..+|++++|+|.+++-+... ..++..+.+.. .....|+++|.||+|+... ....+.++++
T Consensus 84 ---------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~-~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 152 (198)
T 1f6b_A 84 ---------RVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDE-TIANVPILILGNKIDRPEAISEERLREMFG 152 (198)
T ss_dssp ---------CGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCG-GGTTSCEEEEEECTTSTTCCCHHHHHHHHT
T ss_pred ---------HHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCc-ccCCCcEEEEEECCCccccCCHHHHHHHhC
Confidence 233445678899999999985433332 33443333221 1123699999999999753 1133444444
No 59
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.72 E-value=1.3e-16 Score=116.71 Aligned_cols=122 Identities=17% Similarity=0.221 Sum_probs=78.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH--HHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE--FVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~--~~~~~~~~~~ 98 (174)
++|+++|.+|+|||||+|+|++.... .+ ..++.|.........+ .+..+.++||||+.+...... .....+.+..
T Consensus 2 ~kI~lvG~~n~GKSTL~n~L~g~~~~-v~-~~pg~Tv~~~~~~~~~-~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~ 78 (256)
T 3iby_A 2 THALLIGNPNCGKTTLFNALTNANQR-VG-NWPGVTVEKKTGEFLL-GEHLIEITDLPGVYSLVANAEGISQDEQIAAQS 78 (256)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTSEE-EE-ECTTSSSEEEEEEEEE-TTEEEEEEECCCCSSCC------CHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-cc-CCCCceEEEEEEEEEE-CCeEEEEEeCCCcccccccccCCCHHHHHHHHH
Confidence 58999999999999999999998643 22 2345565555555655 677899999999987543100 1111222211
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
. ....+|++++|+|+++ . .....+. ..... ...|+++|+||+|+...
T Consensus 79 ~-~~~~~d~vi~VvDas~-~-~~~~~l~---~~l~~--~~~pvilv~NK~Dl~~~ 125 (256)
T 3iby_A 79 V-IDLEYDCIINVIDACH-L-ERHLYLT---SQLFE--LGKPVVVALNMMDIAEH 125 (256)
T ss_dssp H-HHSCCSEEEEEEEGGG-H-HHHHHHH---HHHTT--SCSCEEEEEECHHHHHH
T ss_pred H-hhCCCCEEEEEeeCCC-c-hhHHHHH---HHHHH--cCCCEEEEEEChhcCCc
Confidence 1 1267899999999984 2 1112222 22221 12699999999998653
No 60
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.72 E-value=1.4e-16 Score=113.01 Aligned_cols=118 Identities=19% Similarity=0.207 Sum_probs=76.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC--CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+..+|+++|++|+|||||++++++....... . +.........+.. ...+.+|||||..+ +..
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~---~--~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~~~ 69 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQ---T--SITDSSAIYKVNNNRGNSLTLIDLPGHES-----------LRF 69 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHSCCCCBC---C--CCSCEEEEEECSSTTCCEEEEEECCCCHH-----------HHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCccccc---C--CcceeeEEEEecCCCccEEEEEECCCChh-----------HHH
Confidence 3479999999999999999999987632221 1 1222233344422 46799999999864 222
Q ss_pred -HHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhh----hhcCcEEEEEeCcCCCCC
Q 030624 97 -CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK----KIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 -~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~iv~tk~D~~~~ 153 (174)
....++..+|++++|+|.++ +........+.+...+.. ....|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~~~i~v~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (214)
T 2fh5_B 70 QLLDRFKSSARAVVFVVDSAA-FQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMA 130 (214)
T ss_dssp HHHHHHGGGEEEEEEEEETTT-HHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTC
T ss_pred HHHHHHHhhCCEEEEEEECCC-cCHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCc
Confidence 33345678899999999983 322233344444433222 223699999999999765
No 61
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.72 E-value=2.3e-16 Score=120.65 Aligned_cols=131 Identities=17% Similarity=0.164 Sum_probs=83.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC--Ccce-----------------------------------------
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS--GVTS----------------------------------------- 57 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~--~~t~----------------------------------------- 57 (174)
++|+++|++|||||||+|+|+|......+.... .++.
T Consensus 35 p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~ 114 (360)
T 3t34_A 35 PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETDRE 114 (360)
T ss_dssp CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHHHh
Confidence 489999999999999999999976433321111 0000
Q ss_pred ---------eeEEEEEEEeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHH
Q 030624 58 ---------TCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAAL 126 (174)
Q Consensus 58 ---------~~~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l 126 (174)
......+.......+.+|||||+.+... ........+...+..++.++|+++++++.. ........++
T Consensus 115 ~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~-~~~~~~~~~~ 193 (360)
T 3t34_A 115 TGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPA-NQDLATSDAI 193 (360)
T ss_dssp SCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEET-TSCGGGCHHH
T ss_pred cCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecc-cCCcCCHHHH
Confidence 0001111111244689999999987532 223455566677777788899999999765 2233334455
Q ss_pred HHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 127 HSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 127 ~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
..+....... .++++|+||+|+....
T Consensus 194 ~l~~~~~~~~--~~~i~V~nK~Dl~~~~ 219 (360)
T 3t34_A 194 KISREVDPSG--DRTFGVLTKIDLMDKG 219 (360)
T ss_dssp HHHHHSCTTC--TTEEEEEECGGGCCTT
T ss_pred HHHHHhcccC--CCEEEEEeCCccCCCc
Confidence 5555543222 5899999999998654
No 62
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.71 E-value=1.1e-16 Score=111.43 Aligned_cols=117 Identities=15% Similarity=0.094 Sum_probs=75.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+..+|+++|.+|+|||||+|.+++....... . |.........+ ++..+.++||||..+.. ...
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~-~----t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~~ 77 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSMNEVVHTS-P----TIGSNVEEIVI-NNTRFLMWDIGGQESLR-----------SSW 77 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHTTSCEEEE-C----CSCSSCEEEEE-TTEEEEEEECCC----C-----------GGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCcCc-C----CCccceEEEEE-CCEEEEEEECCCCHhHH-----------HHH
Confidence 3489999999999999999999976543221 1 22222333444 67889999999987522 222
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+...
T Consensus 78 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 132 (187)
T 1zj6_A 78 NTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHED-LRKAGLLIFANKQDVKEC 132 (187)
T ss_dssp HHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGG-GTTCEEEEEEECTTSTTC
T ss_pred HHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchh-hCCCeEEEEEECCCCcCC
Confidence 344577899999999985543333 334433333211 123699999999999764
No 63
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.71 E-value=1.3e-16 Score=108.36 Aligned_cols=118 Identities=18% Similarity=0.166 Sum_probs=73.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|++|+|||||+|++++........ ..+.......... .+ ..+.++||||..+. ...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~l~D~~G~~~~-----------~~~ 67 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYD---PTIEDFYRKEIEV-DSSPSVLEILDTAGTEQF-----------ASM 67 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSCCCSCCC---TTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC-----------HHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHcCCCcccCC---CCcceeEEEEEEE-CCEEEEEEEEECCCchhh-----------HHH
Confidence 4789999999999999999999765432211 1111112223333 33 34889999997752 112
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+..+|++++|+|.++..+... ..++..+.+.... ...|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 68 RDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRY-EKVPVILVGNKVDLESE 123 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECGGGGGG
T ss_pred HHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECCccccc
Confidence 2223445699999999984332222 3444444444321 23699999999998653
No 64
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.71 E-value=1.5e-17 Score=113.29 Aligned_cols=119 Identities=21% Similarity=0.107 Sum_probs=74.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
...+|+++|++|+|||||+|++++....... ....+............ ...+.++||||..+... .
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-----------~ 70 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDY--KKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDA-----------I 70 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHCCCCCCS--SCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTC-----------C
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcCCCCCCC--CCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHH-----------H
Confidence 3479999999999999999999986532221 11111222222333311 24689999999765321 1
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+..+|++++|+|.+++.+... ..++..+.... ...|+++|+||+|+...
T Consensus 71 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~---~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 71 TKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV---GDIPTALVQNKIDLLDD 124 (168)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH---CSCCEEEEEECGGGGGG
T ss_pred HHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC---CCCCEEEEEECcccCcc
Confidence 2234567899999999985322222 34555554443 23699999999998753
No 65
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.71 E-value=4.7e-17 Score=114.13 Aligned_cols=113 Identities=16% Similarity=0.205 Sum_probs=71.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC------------------------------
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG------------------------------ 69 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~------------------------------ 69 (174)
..+|+++|++|+|||||+|+|++........ .............+ .+
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKDTFHENTN--TTIGASFCTYVVNL-NDINIKNNSNNEKNNNINSINDDNNVIITNQH 83 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHSCCCSSCC--CCCSCEEEEEEEET-TC------------------------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCcCCCCcC--ccccceeEEEEEEe-cCcccccccccccccccccccccccccccccc
Confidence 4899999999999999999999876432211 11111111222222 11
Q ss_pred ---------cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcC
Q 030624 70 ---------QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFD 139 (174)
Q Consensus 70 ---------~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~ 139 (174)
..+.++||||..... ......+..+|++++|+|++++.+... ..++..+....+ .
T Consensus 84 ~~~~~~~~~~~~~i~Dt~G~~~~~-----------~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~ 148 (208)
T 3clv_A 84 NNYNENLCNIKFDIWDTAGQERYA-----------SIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN----Y 148 (208)
T ss_dssp -CCCTTTCEEEEEEEECTTGGGCT-----------TTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----C
T ss_pred ccccCccceeEEEEEECCCcHHHH-----------HHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----C
Confidence 578999999976532 122334567899999999985433332 344444444321 6
Q ss_pred cEEEEEeCcCC
Q 030624 140 YMIVVFTGGDE 150 (174)
Q Consensus 140 ~~~iv~tk~D~ 150 (174)
|+++|+||+|.
T Consensus 149 piilv~NK~D~ 159 (208)
T 3clv_A 149 IIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTC
T ss_pred cEEEEEECCCc
Confidence 99999999993
No 66
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.71 E-value=6.9e-17 Score=111.17 Aligned_cols=121 Identities=15% Similarity=0.108 Sum_probs=76.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC--CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD--GQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~--~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+..+|+++|++|+|||||+|.+++.......... .+.......+.+.. ...+.++||||......
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t--~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~----------- 71 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQT--IGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGK----------- 71 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHT--TTSSEEEEEEEETTTEEEEEEEEECTTCCTTCT-----------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCc--eeEEEEEEEEEeCCCCEEEEEEEECCCCccccc-----------
Confidence 4589999999999999999999986532111111 11122223333422 25789999999876321
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCc-EEEEEeCcCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDY-MIVVFTGGDELE 152 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~ 152 (174)
....++..+|++++|+|.+++.+... ..++..+..........| +++|+||+|+..
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~ 129 (178)
T 2hxs_A 72 MLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEH 129 (178)
T ss_dssp THHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGG
T ss_pred hhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEcccccc
Confidence 12234567899999999985433222 455555655432211234 789999999965
No 67
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.71 E-value=1.8e-16 Score=109.97 Aligned_cols=118 Identities=17% Similarity=0.112 Sum_probs=77.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
....+|+++|++|+|||||++.+++...... ..|.......+.+ ++..+.++||||... +...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~~~~-----~~t~g~~~~~~~~-~~~~l~i~Dt~G~~~-----------~~~~ 76 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASEDISHI-----TPTQGFNIKSVQS-QGFKLNVWDIGGQRK-----------IRPY 76 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECSSCGG-----------GHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcCCCCcc-----cCcCCeEEEEEEE-CCEEEEEEECCCCHH-----------HHHH
Confidence 3458999999999999999999998753211 1122222334444 577899999999765 3333
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+...+..+|++++|+|.+++-+... ..++..+..... ....|+++|.||+|+...
T Consensus 77 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 77 WRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEK-LSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp HHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGG-GTTCCEEEEEECTTSTTC
T ss_pred HHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChh-hcCCCEEEEEECcCcccC
Confidence 4455678899999999985433332 233332222111 123699999999999765
No 68
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.71 E-value=3.5e-17 Score=115.40 Aligned_cols=117 Identities=15% Similarity=0.130 Sum_probs=75.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|.+|+|||||+|.+++....... ....+.......+.+ ++ ..+.++||||..+ +...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~~ 94 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTGAFSERQ--GSTIGVDFTMKTLEI-QGKRVKLQIWDTAGQER-----------FRTI 94 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCC------------CEEEEEEEE-TTEEEEEEEECCTTCGG-----------GHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHhhCCCCCCC--CCCcceEEEEEEEEE-CCEEEEEEEEECCCcHh-----------HHHH
Confidence 478999999999999999999876532111 111111222223333 33 4789999999765 3334
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+..++..+|++++|+|.+++.+... ..+++.+...... ..|+++|+||+|+..
T Consensus 95 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~--~~piilv~NK~Dl~~ 148 (201)
T 2hup_A 95 TQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGS--NIVQLLIGNKSDLSE 148 (201)
T ss_dssp HHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred HHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECCcccc
Confidence 4456678899999999984332222 4555555554322 268999999999975
No 69
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.71 E-value=2.9e-17 Score=115.62 Aligned_cols=121 Identities=22% Similarity=0.197 Sum_probs=74.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEI 94 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 94 (174)
..+..+|+++|.+|+|||||+|+|++....... ..|...... .... .....+.++||||..+...
T Consensus 21 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------- 87 (201)
T 3oes_A 21 LVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY----DPTVENTYSKIVTLGKDEFHLHLVDTAGQDEYSI--------- 87 (201)
T ss_dssp --CEEEEEEEESTTSSHHHHHHHHHHSCCCSCC----CCCSEEEEEEEEC----CEEEEEEEECCCCTTCC---------
T ss_pred CCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCC----CCccceEEEEEEEECCEEEEEEEEECCCccchHH---------
Confidence 344589999999999999999999987643221 122222211 1111 1345679999999876432
Q ss_pred HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....++..+|++++|+|.++.-+... ..++..+...... ...|+++|+||+|+...
T Consensus 88 --~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 88 --LPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGK-TRVPVVLVGNKADLSPE 144 (201)
T ss_dssp --CCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC------CCCEEEEEECTTCGGG
T ss_pred --HHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccCccc
Confidence 23356778999999999984322222 3444444333211 23689999999998743
No 70
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.71 E-value=5.1e-17 Score=112.36 Aligned_cols=118 Identities=15% Similarity=0.105 Sum_probs=74.9
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+..+|+++|++|+|||||+|++++....... .|.........+ ++..+.++||||..+.. ..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 78 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQIGEVVTTK-----PTIGFNVETLSY-KNLKLNVWDLGGQTSIR-----------PY 78 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCCSEEEEEC-----SSTTCCEEEEEE-TTEEEEEEEEC----CC-----------TT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcCCcCccC-----CcCccceEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence 34589999999999999999999976542121 111122333444 57889999999987632 22
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+...+..+|++++|+|.+++-+... ..++..+..... ....|+++|+||+|+...
T Consensus 79 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 134 (183)
T 1moz_A 79 WRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEE-LQDAALLVFANKQDQPGA 134 (183)
T ss_dssp GGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSST-TSSCEEEEEEECTTSTTC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChh-hCCCeEEEEEECCCCCCC
Confidence 3456778999999999985543333 333333322110 123699999999999764
No 71
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.71 E-value=2.3e-16 Score=116.39 Aligned_cols=123 Identities=20% Similarity=0.227 Sum_probs=81.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh--HHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS--EFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~--~~~~~~~~~~ 97 (174)
..+|+++|.+|+|||||+|+|++... ..+ ...+.|.......+.+ .+..+.++||||+.+..... ......+.+.
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~~~-~v~-~~~g~t~~~~~~~~~~-~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~ 79 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGSRQ-RVG-NWAGVTVERKEGQFST-TDHQVTLVDLPGTYSLTTISSQTSLDEQIACH 79 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTTCE-EEE-ECTTSSSEEEEEEEEC-SSCEEEEEECCCCSCSCC----CCHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCc-ccC-CCCCeeEEEEEEEEEe-CCCceEEEECcCCCccccccccCCHHHHHHHH
Confidence 47899999999999999999999873 233 2345566555555655 67789999999998855211 1111222222
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
. .....+|++++|+|+++ . .....+...+.+. . .|+++|+||+|+...
T Consensus 80 ~-~~~~~~d~ii~VvD~~~-~-~~~~~~~~~l~~~---~--~p~ivv~NK~Dl~~~ 127 (274)
T 3i8s_A 80 Y-ILSGDADLLINVVDASN-L-ERNLYLTLQLLEL---G--IPCIVALNMLDIAEK 127 (274)
T ss_dssp H-HHHTCCSEEEEEEEGGG-H-HHHHHHHHHHHHH---T--CCEEEEEECHHHHHH
T ss_pred H-HhhcCCCEEEEEecCCC-h-HHHHHHHHHHHhc---C--CCEEEEEECccchhh
Confidence 1 13468899999999983 2 2223344444433 2 699999999998643
No 72
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.71 E-value=1.4e-17 Score=116.37 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=74.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|++|+|||||+|.+++........ ...+.......... ++ ..+.++||||..+... .
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~--~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~-----------~ 86 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHD--LTIGVEFGARMVNI-DGKQIKLQIWDTAGQESFRS-----------I 86 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-------CCSSEEEEEEEE-TTEEEEEEEECCTTGGGTSC-----------C
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCCC--CcccceeEEEEEEE-CCEEEEEEEEECCCchhhhh-----------h
Confidence 4789999999999999999999866432211 11222222223333 33 4789999999765322 1
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
....+..+|++++|+|.++..+... ..++..+...... ..|+++|+||+|+..
T Consensus 87 ~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~ 140 (191)
T 2a5j_A 87 TRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSS--NMVIMLIGNKSDLES 140 (191)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT--TCEEEEEEECTTCGG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC--CCCEEEEEECcccCC
Confidence 2234567899999999985332222 3455555543222 268999999999965
No 73
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.71 E-value=1.1e-17 Score=114.12 Aligned_cols=118 Identities=13% Similarity=0.161 Sum_probs=73.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..+|+++|++|+|||||+|++++....... ....+.........+.. ...+.++||||..+.... .
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~-----------~ 69 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSF--ITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTI-----------T 69 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHCCCCC---------CCEEEEEEESSSCEEEEEEECCTTGGGTSCC-----------C
T ss_pred ceEEEEECcCCCCHHHHHHHHHhCCCCCCC--CCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhh-----------H
Confidence 378999999999999999999976532221 12222222223333311 236899999997653221 2
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
...+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+..
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~ 122 (170)
T 1g16_A 70 TAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMET 122 (170)
T ss_dssp HHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTT
T ss_pred HHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCCc
Confidence 234567899999999985432222 45555555543222 68999999999943
No 74
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.71 E-value=1.4e-16 Score=111.52 Aligned_cols=118 Identities=12% Similarity=0.046 Sum_probs=73.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+..+|+++|++|+|||||+|.+++...... .+|.........+ .+..+.++||||..+.. ..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~~-----~~t~~~~~~~~~~-~~~~~~i~Dt~G~~~~~-----------~~ 89 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNICFTVWDVGGQDKIR-----------PL 89 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----C-----------TT
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhCCcccc-----CCcCceeEEEEEE-CCEEEEEEECCCCHhHH-----------HH
Confidence 4458999999999999999999987664321 1232233334444 67789999999987632 12
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+...+..+|++++|+|.+++-+... ..++..+..... ....|+++|+||+|+...
T Consensus 90 ~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~-~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 90 WRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDE-LRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccc-cCCCeEEEEEECCCCCCC
Confidence 2234457799999999985533332 233333322111 123699999999999764
No 75
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.70 E-value=2.9e-17 Score=113.19 Aligned_cols=122 Identities=22% Similarity=0.237 Sum_probs=75.2
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHH
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVG 91 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~ 91 (174)
.+..+..+|+++|++|+|||||+|++++...... ...|..... ....+ ++ ..+.++||||..+......
T Consensus 4 ~~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~~~~--- 75 (181)
T 2fn4_A 4 PPPSETHKLVVVGGGGVGKSALTIQFIQSYFVSD----YDPTIEDSYTKICSV-DGIPARLDILDTAGQEEFGAMRE--- 75 (181)
T ss_dssp CCSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSS----CCTTCCEEEEEEEEE-TTEEEEEEEEECCCTTTTSCCHH---
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhCcCccc----cCCCcCceEEEEEEE-CCEEEEEEEEECCCchhhHHHHH---
Confidence 3445568999999999999999999998753221 112222222 22333 33 3678999999876432211
Q ss_pred HHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 92 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.++..+|++++|+|.++.-+... ..++..+..... ....|+++|+||+|+...
T Consensus 76 --------~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 76 --------QYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKD-RDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp --------HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHT-SSCCCEEEEEECGGGGGG
T ss_pred --------HHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccccc
Confidence 12334699999999984322222 344444433322 122689999999998753
No 76
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.70 E-value=3.2e-17 Score=113.48 Aligned_cols=122 Identities=25% Similarity=0.212 Sum_probs=74.5
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE-EEEEEEeCCc--EEEEEeCCCCCCCCCChHHHH
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE-MQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVG 91 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~-~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~ 91 (174)
.+..+..+|+++|++|+|||||+|++++....... ..|.... ...... .+. .+.++||||..+....
T Consensus 13 ~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~----- 82 (183)
T 3kkq_A 13 SENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDY----DPTIEDSYLKHTEI-DNQWAILDVLDTAGQEEFSAM----- 82 (183)
T ss_dssp -CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEE-TTEEEEEEEEECCSCGGGCSS-----
T ss_pred ccCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCC----CCCccceeEEEEEe-CCcEEEEEEEECCCchhhHHH-----
Confidence 34445689999999999999999999976532221 1122112 222223 443 3567999997653211
Q ss_pred HHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 92 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...++..+|++++|+|.+++-+... ..++..+...... ...|+++|+||+|+...
T Consensus 83 ------~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 138 (183)
T 3kkq_A 83 ------REQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDR-ESFPMILVANKVDLMHL 138 (183)
T ss_dssp ------HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTS-SCCCEEEEEECTTCSTT
T ss_pred ------HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECCCchhc
Confidence 1122344699999999985422222 4455555443222 23689999999998753
No 77
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.70 E-value=7e-17 Score=109.93 Aligned_cols=119 Identities=21% Similarity=0.081 Sum_probs=63.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..+|+++|++|+|||||+|++++....... ...+.+. . ...... ....+.++||||... +....
T Consensus 2 ~~ki~~vG~~~~GKSsli~~l~~~~~~~~~-~~~~~~~-~--~~~~~~~~~~~~~i~D~~g~~~-----------~~~~~ 66 (166)
T 3q72_A 2 VYKVLLLGAPGVGKSALARIFGGVEDGPEA-EAAGHTY-D--RSIVVDGEEASLMVYDIWEQDG-----------GRWLP 66 (166)
T ss_dssp CCEEEEEESTTSSHHHHHHHHCCC-----------CEE-E--EEEEETTEEEEEEEEECC--------------------
T ss_pred eEEEEEECCCCCCHHHHHHHHcCccccCCC-Cccccce-E--EEEEECCEEEEEEEEECCCCcc-----------chhhh
Confidence 368999999999999999999986643221 1122222 1 122221 234678999999876 22333
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
...+..+|++++|+|.+++-+... ..++..+..... ....|+++|+||+|+....
T Consensus 67 ~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~nK~Dl~~~~ 122 (166)
T 3q72_A 67 GHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQ-TDDVPIILVGNKSDLVRSR 122 (166)
T ss_dssp ------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCCEEEEEECTTCCSSC
T ss_pred hhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEecccccccc
Confidence 345677899999999985432222 344444443311 1236999999999997543
No 78
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.70 E-value=5e-17 Score=115.09 Aligned_cols=118 Identities=14% Similarity=0.194 Sum_probs=76.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
...+|+++|++|+|||||+|++++...... .....+.......+.+ .+ ..+.+|||||..... .
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~~-----------~ 84 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVEDKFNPS--FITTIGIDFKIKTVDI-NGKKVKLQLWDTAGQERFR-----------T 84 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHHCCCCCS--SSCCCSCCEEEEEEEE-TTEEEEEEEECCTTGGGGT-----------C
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCCCCcc--cCCcccceEEEEEEEE-CCEEEEEEEEeCCCcHHHH-----------H
Confidence 348999999999999999999997653222 1122222333333444 33 468999999976532 1
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.+...+..+|++++|+|++++.+... ..++..+....... .|+++|+||+|+..
T Consensus 85 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~ 139 (213)
T 3cph_A 85 ITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDMET 139 (213)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCSS
T ss_pred HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCcc
Confidence 22334567899999999984332222 45555555543322 68999999999943
No 79
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.70 E-value=2.2e-16 Score=111.14 Aligned_cols=121 Identities=20% Similarity=0.168 Sum_probs=76.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 94 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~ 94 (174)
..+..+|+++|++|+|||||+|.+++....... .+.+.........+ .+ ..+.++||||..+.
T Consensus 11 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~----------- 75 (206)
T 2bov_A 11 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDY---EPTKADSYRKKVVL-DGEEVQIDILDTAGQEDY----------- 75 (206)
T ss_dssp CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCTTCC-----------
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCccceEEEEEEEE-CCEEEEEEEEcCCChhhh-----------
Confidence 344589999999999999999999976632211 11111112223333 33 36889999998762
Q ss_pred HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......++..+|++++|+|.++.-+... ..++..+...... ...|+++|+||+|+...
T Consensus 76 ~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 76 AAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKED-ENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp HHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEeccCcccc
Confidence 1222233445699999999984322222 4455555554321 13699999999999753
No 80
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.70 E-value=4.4e-17 Score=116.28 Aligned_cols=118 Identities=17% Similarity=0.157 Sum_probs=77.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE--EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM--QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE 93 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~ 93 (174)
.+..+|+++|.+|+|||||++.++....... ..+|....+ ..... .+ ..+.+|||+|..+.
T Consensus 11 ~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~----~~~Tig~d~~~k~~~~-~~~~v~l~iwDtaGqe~~---------- 75 (216)
T 4dkx_A 11 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNT----YQATIGIDFLSKTMYL-EDRTIRLQLWDTAGLERF---------- 75 (216)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCC--------------CEEEEEEC-SSCEEEEEEECCSCTTTC----------
T ss_pred CCcEEEEEECcCCcCHHHHHHHHHhCCCCCC----cCCccceEEEEEEEEe-cceEEEEEEEECCCchhh----------
Confidence 3457999999999999999999987653222 112222221 12222 22 35789999998873
Q ss_pred HHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......++..++++++|+|.+++-+... ..|+..+....+.. .|++||.||+|+...
T Consensus 76 -~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 76 -RSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADK 133 (216)
T ss_dssp -GGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGG
T ss_pred -hhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhc
Confidence 2333456778899999999985443333 56777777765544 589999999998754
No 81
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.70 E-value=1.5e-16 Score=119.24 Aligned_cols=126 Identities=20% Similarity=0.199 Sum_probs=84.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|.+|+|||||+|.+++....... ...+.|.........+.....+.+|||||..+. ..........
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~-~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~------~~~~~~~~~~ 75 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYSAFDT-RRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF------MENYFTKQKD 75 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCCTGGG-GGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH------HHHHHTTTHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCCccc-cCcCCccceEEEEEEeCCceEEEEEECCCcHHH------hhhhhhhHHH
Confidence 378999999999999999999887432221 134455555555555435668999999997641 1111123344
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
..+.++|++++|+|+++.-+..+ ..+.+.+.+........|+++|+||+|+..
T Consensus 76 ~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 76 HIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp HHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred HHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 45678899999999985544444 344455555432222369999999999976
No 82
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.70 E-value=9e-18 Score=117.31 Aligned_cols=119 Identities=13% Similarity=0.094 Sum_probs=76.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
..+|+++|++|+|||||+|.+++...........+.+... ...... ....+.++||||... +....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~--~~~~~~~~~~~~~i~Dt~G~~~-----------~~~~~ 89 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKV--KTVYRHEKRVKLQIWDTAGQER-----------YRTIT 89 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEE--EEEEETTTTEEEEEECHHHHHH-----------CHHHH
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEE--EEEEECCEEEEEEEEeCCChHH-----------HHHHH
Confidence 4799999999999999999999765322211111222222 222221 345789999999543 33444
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.+++-+... ..+++.+....... .|+++|+||+|+...
T Consensus 90 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 90 TAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEE 143 (191)
T ss_dssp HHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGG
T ss_pred HHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence 556778899999999985322222 45555555543222 689999999998643
No 83
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.70 E-value=3.3e-17 Score=115.57 Aligned_cols=123 Identities=14% Similarity=0.104 Sum_probs=77.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC-CcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
....+|+++|++|+|||||+|+|++...... .....+............ ...+.++||||..... .
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~--~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~ 72 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQ--YKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQ-----------S 72 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHSCCCSS--CCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGS-----------C
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcCCCCCC--CCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHH-----------H
Confidence 3458999999999999999999998764322 112222223333333311 2468999999976522 2
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 153 (174)
....++..+|++++|+|++++.+... ..++..+...... ....|+++|+||+|+...
T Consensus 73 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (207)
T 1vg8_A 73 LGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR 132 (207)
T ss_dssp SCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred hHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence 22345678899999999985432222 3455555544321 023699999999999743
No 84
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.70 E-value=1.6e-16 Score=125.30 Aligned_cols=125 Identities=18% Similarity=0.178 Sum_probs=66.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+|+++|++|+|||||+|+|++....... ...+.|.......+.+ ++..+.+|||||+.++. +.+.....+....
T Consensus 234 ~kV~ivG~~nvGKSSLln~L~~~~~a~vs-~~~gtT~d~~~~~i~~-~g~~l~liDT~G~~~~~---~~ve~~gi~~~~~ 308 (476)
T 3gee_A 234 VSTVIAGKPNAGKSTLLNTLLGQERAIVS-HMPGTTRDYIEECFIH-DKTMFRLTDTAGLREAG---EEIEHEGIRRSRM 308 (476)
T ss_dssp EEEEEECCTTSSHHHHHHHCC-------------------CEEEEE-TTEEEEEEC-----------------------C
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCcccC-CCCCceEEEEEEEEEE-CCeEEEEEECCCCCcch---hHHHHHHHHHHHh
Confidence 67999999999999999999987532121 2233444444445555 67889999999997632 2222222344455
Q ss_pred ccCCceEEEEEEeCCCCCCHHHH-HHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEE-AALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
.+..+|++++|+|++++.+.... ...+.+... . ..|+++|+||+|+....
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l-~---~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAH-P---AAKFLTVANKLDRAANA 359 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC-T---TSEEEEEEECTTSCTTT
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhc-C---CCCEEEEEECcCCCCcc
Confidence 77899999999999877666321 222222222 2 26999999999998764
No 85
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.70 E-value=2e-16 Score=108.41 Aligned_cols=121 Identities=21% Similarity=0.161 Sum_probs=70.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+..+|+++|++|+|||||+|.+++....... ...+.+.. .....+ ++ ..+.++||||..... ...
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~-~~~~~~~~--~~~~~~-~~~~~~~~~~D~~g~~~~~---------~~~ 69 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH-EQLGEDVY--ERTLTV-DGEDTTLVVVDTWEAEKLD---------KSW 69 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCC-----C-CCSSSSEE--EEEEEE-TTEEEEEEEECCC----------------CH
T ss_pred eEEEEEEECCCCccHHHHHHHHhcCCCcccc-Ccccccee--EEEEEE-CCEEEEEEEEecCCCCccc---------hhh
Confidence 3479999999999999999999987643222 22222222 222333 33 367899999987520 112
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|.+++-+... ..++..+..... ....|+++|+||+|+...
T Consensus 70 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~-~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 70 SQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQ-ADHVPIILVGNKADLARC 126 (175)
T ss_dssp HHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC-----CCEEEEEECTTCTTT
T ss_pred hHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhc-cCCCCEEEEEEChhhccc
Confidence 22345677899999999985332222 344444444311 113689999999999764
No 86
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.70 E-value=1e-16 Score=112.48 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=76.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE--eCCcEEEEEeCCCCCCCCCChHHHHH
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL--KDGQVVNVIDTPGLFDFSAGSEFVGK 92 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~~~~~~iDtpG~~~~~~~~~~~~~ 92 (174)
.+..+..+|+++|.+|+|||||++.+.+....... .+............ .....+.+|||||..........
T Consensus 15 ~~~~~~~ki~~vG~~~vGKTsLi~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~--- 88 (196)
T 3llu_A 15 YFQGSKPRILLMGLRRSGKSSIQKVVFHKMSPNET---LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFD--- 88 (196)
T ss_dssp -----CCEEEEEESTTSSHHHHHHHHHSCCCGGGG---GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCC---
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHHhcCCCcce---eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhh---
Confidence 34445689999999999999999999986432211 11111111122221 13467899999998764322100
Q ss_pred HHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 93 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
. ..++.++|++++|+|.+++.......+.+++.+........|+++|.||+|+...
T Consensus 89 -~----~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 89 -Y----EMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp -H----HHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred -c----ccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 0 1234567999999999866333335555555554222223699999999998753
No 87
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.70 E-value=5.8e-17 Score=110.29 Aligned_cols=118 Identities=17% Similarity=0.170 Sum_probs=73.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|++|+|||||+|++++....... ..|..... ...... ....+.++||||..+... .
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~-----------~ 67 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKY----DPTIEDSYRKQVEVDCQQCMLEILDTAGTEQFTA-----------M 67 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHCCCCCSC----CCCSEEEEEEEEESSSCEEEEEEEEECSSCSSTT-----------H
T ss_pred eeEEEEECCCCCCHHHHHHHHHcCCCCCCC----CCCccceEEEEEEECCEEEEEEEEECCChHHHHH-----------H
Confidence 478999999999999999999986532211 12222221 222221 123688999999876321 1
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....+..+|++++|+|.+++-+... ..+++.+...... ...|+++|+||+|+...
T Consensus 68 ~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 68 RDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDT-EDVPMILVGNKCDLEDE 123 (167)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCC-SCCCEEEEEECTTCGGG
T ss_pred HHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCc-CCCcEEEEEECcccccc
Confidence 1122334699999999985322222 3455555554321 23689999999999754
No 88
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.70 E-value=4.5e-16 Score=108.35 Aligned_cols=123 Identities=18% Similarity=0.146 Sum_probs=72.0
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHH
Q 030624 14 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVG 91 (174)
Q Consensus 14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~ 91 (174)
+.+..+..+|+++|.+|+|||||+|.|++....... ...+.......... .+ ..+.++||||..+
T Consensus 15 ~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~--------- 81 (190)
T 3con_A 15 YFQGMTEYKLVVVGAGGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEE--------- 81 (190)
T ss_dssp ----CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCC------------
T ss_pred cccccceeEEEEECcCCCCHHHHHHHHHcCCCcccc---CCccceEEEEEEEE-CCEEEEEEEEECCChHH---------
Confidence 344455689999999999999999999976532211 11111111222333 33 3488999999765
Q ss_pred HHHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 92 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+......++..+|++++|+|.++..+..+ ..++..+...... ...|+++|+||+|+..
T Consensus 82 --~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 82 --YSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDS-DDVPMVLVGNKCDLPT 140 (190)
T ss_dssp ----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSC
T ss_pred --HHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCC-CCCeEEEEEECCcCCc
Confidence 23334456778899999999985433222 4455555554321 1268999999999875
No 89
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.70 E-value=6e-17 Score=112.79 Aligned_cols=117 Identities=13% Similarity=0.033 Sum_probs=77.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+..+|+++|++|+|||||+|++++....... +|.........+ ++..+.++||||..+.... .
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~-----~t~~~~~~~~~~-~~~~~~~~Dt~G~~~~~~~-----------~ 83 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHLGDVVTTV-----PTVGVNLETLQY-KNISFEVWDLGGQTGVRPY-----------W 83 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCCSCCEEEC-----SSTTCCEEEEEE-TTEEEEEEEECCSSSSCCC-----------C
T ss_pred CceEEEEECCCCCCHHHHHHHHHcCCCCCcC-----CCCceEEEEEEE-CCEEEEEEECCCCHhHHHH-----------H
Confidence 4589999999999999999999876643221 122223334444 6778999999998763321 2
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|++++-+... ..++..+..... ....|+++|+||+|+...
T Consensus 84 ~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 84 RCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDE-LRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp SSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCST-TTTCEEEEEEECTTSTTC
T ss_pred HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhh-cCCCeEEEEEECCCCcCC
Confidence 345678999999999985543333 233322222110 123699999999999765
No 90
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.70 E-value=1.3e-16 Score=111.64 Aligned_cols=115 Identities=15% Similarity=0.089 Sum_probs=76.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
+..+|+++|.+|+|||||+|.+++...... ...|...... .... .+. .+.++||||..+ +.
T Consensus 22 ~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~----~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~-----------~~ 85 (194)
T 3reg_A 22 KALKIVVVGDGAVGKTCLLLAFSKGEIPTA----YVPTVFENFSHVMKY-KNEEFILHLWDTAGQEE-----------YD 85 (194)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEEE-TTEEEEEEEEEECCSGG-----------GT
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCc----cCCeeeeeeEEEEEE-CCEEEEEEEEECCCcHH-----------HH
Confidence 457999999999999999999998764211 1122222222 2222 333 468999999765 33
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.....++..+|++++|+|.+++-+... ..++..+.... . ..|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~p~ilv~nK~Dl~~ 141 (194)
T 3reg_A 86 RLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-D--TAKTVLVGLKVDLRK 141 (194)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-T--TSEEEEEEECGGGCC
T ss_pred HHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEChhhcc
Confidence 344557788999999999985433333 34555555442 1 259999999999874
No 91
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.69 E-value=4.9e-16 Score=106.12 Aligned_cols=120 Identities=18% Similarity=0.254 Sum_probs=73.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+++++|++|+|||||+|++++...... ...+.|.......+.+ ++..+.++||||+.+..... ..+.+.....
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~l~i~Dt~G~~~~~~~~--~~~~~~~~~~ 77 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANS--IDEIIARDYI 77 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHCCSSSCC-------CCCCCEEEEEE-TTEEEEEEECCCCSCSSSSS--HHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhCCCeecc--CCCCcceeeeEEEEEE-CCcEEEEEECCCcccCCCcc--hhHHHHHHHH
Confidence 47899999999999999999998653322 1122233333333444 56789999999998743221 1111211111
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
...++|++++++|.++ .. ....++..+.+ . ..|+++|.||+|+..
T Consensus 78 -~~~~~~~~i~v~D~~~-~~-~~~~~~~~~~~---~--~~p~ilv~nK~Dl~~ 122 (165)
T 2wji_A 78 -INEKPDLVVNIVDATA-LE-RNLYLTLQLME---M--GANLLLALNKMDLAK 122 (165)
T ss_dssp -HHHCCSEEEEEEETTC-HH-HHHHHHHHHHH---T--TCCEEEEEECHHHHH
T ss_pred -hcCCCCEEEEEecCCc-hh-HhHHHHHHHHh---c--CCCEEEEEEchHhcc
Confidence 1136799999999983 21 12334333332 1 269999999999853
No 92
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.69 E-value=2.1e-17 Score=117.66 Aligned_cols=120 Identities=21% Similarity=0.222 Sum_probs=76.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
...+|+++|.+|+|||||+|+|++...........+ ............. ..+.++||||........
T Consensus 10 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~--~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------- 78 (218)
T 4djt_A 10 LTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVG--AVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLK--------- 78 (218)
T ss_dssp CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTT--EEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCC---------
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccc--eeeEEEEEEeCCCcEEEEEEEecCCchhhchHH---------
Confidence 347999999999999999999997653322111111 1111111211112 468999999977533221
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.+++.+..+ ..++..+....... .|+++|+||+|+...
T Consensus 79 --~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 79 --DVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNR 132 (218)
T ss_dssp --HHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC--
T ss_pred --HHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccc
Confidence 224566899999999985543333 45666666654333 699999999998754
No 93
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.69 E-value=5.6e-17 Score=114.01 Aligned_cols=120 Identities=23% Similarity=0.160 Sum_probs=73.8
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCCc--EEEEEeCCCCCCCCCChHHHH
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVG 91 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~ 91 (174)
....+..+|+++|.+|+|||||++.+++.... .. ...|..... ..... ++. .+.++||||..+...
T Consensus 15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~-~~---~~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~------ 83 (201)
T 2q3h_A 15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYP-TE---YIPTAFDNFSAVVSV-DGRPVRLQLCDTAGQDEFDK------ 83 (201)
T ss_dssp -----CEEEEEECSTTSSHHHHHHHHHC------------CCSSEEEEEEEEE-TTEEEEEEEEECCCSTTCSS------
T ss_pred CCCCcceEEEEECCCCCCHHHHHHHHHhCCCC-CC---CCCcccceeEEEEEE-CCEEEEEEEEECCCCHHHHH------
Confidence 34445589999999999999999999987632 21 111221111 22223 343 567999999976432
Q ss_pred HHHHHHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 92 KEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....++..+|++++|+|.+++.+... ..++..+..... ..|+++|+||+|+...
T Consensus 84 -----~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 139 (201)
T 2q3h_A 84 -----LRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCP---KAPIILVGTQSDLRED 139 (201)
T ss_dssp -----SGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCS---SSCEEEEEECGGGGGC
T ss_pred -----HhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEECHhhhhc
Confidence 23346778899999999985433333 245555555432 3699999999999753
No 94
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.69 E-value=4.3e-17 Score=116.64 Aligned_cols=118 Identities=17% Similarity=0.134 Sum_probs=75.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
...+|+++|++|+|||||+|.|++....... ....+.......+.+ .+ ..+.+|||||..... .
T Consensus 12 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~ 77 (223)
T 3cpj_B 12 LLFKIVLIGDSGVGKSNLLSRFTKNEFNMDS--KSTIGVEFATRTLEI-EGKRIKAQIWDTAGQERYR-----------A 77 (223)
T ss_dssp EEEEEEEESCTTSSHHHHHHHHHHCCCCC--------CCSEEEEEEEE-TTEEEEEEEECCTTTTTTT-----------C
T ss_pred eeeEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCcccceeEEEEEEE-CCEEEEEEEEECCCccchh-----------h
Confidence 3479999999999999999999987643221 111222222223333 33 478999999987632 2
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
....++..+|++++|+|.+++.+... ..++..+...... ..|+++|+||+|+..
T Consensus 78 ~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~--~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 78 ITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADD--NVAVGLIGNKSDLAH 132 (223)
T ss_dssp CCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGG
T ss_pred hHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCC--CCeEEEEEECccccc
Confidence 23456788999999999985433333 3455555554322 268999999999975
No 95
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.69 E-value=1.8e-17 Score=116.76 Aligned_cols=119 Identities=17% Similarity=0.145 Sum_probs=72.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
...+|+++|++|+|||||+|.+++....... ....+.......... .+ ..+.++||||... +..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~--~~t~~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 89 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIENKFKQDS--NHTIGVEFGSRVVNV-GGKTVKLQIWDTAGQER-----------FRS 89 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC--------------CCEEEEEEEE-TTEEEEEEEECCTTHHH-----------HSC
T ss_pred cceEEEEECcCCCCHHHHHHHHHhCCCCccC--CCcccceeEEEEEEE-CCeeeEEEEEcCCCcHh-----------HHH
Confidence 3489999999999999999999987643221 111222222223333 33 4789999999643 222
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|.+++.+... ..++..+...... ..|+++|+||+|+...
T Consensus 90 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 90 VTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASP--NIVVILCGNKKDLDPE 145 (200)
T ss_dssp CCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCT--TCEEEEEEECGGGGGG
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCC--CCcEEEEEECCCcccc
Confidence 23345677899999999985432222 4455555544322 2689999999998643
No 96
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.4e-17 Score=116.19 Aligned_cols=122 Identities=16% Similarity=0.141 Sum_probs=75.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
.+..+|+++|++|+|||||+|+|++....... ....+.........+. ....+.++||||..+.. .
T Consensus 13 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~--~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 79 (195)
T 1x3s_A 13 LTTLKILIIGESGVGKSSLLLRFTDDTFDPEL--AATIGVDFKVKTISVDGNKAKLAIWDTAGQERFR-----------T 79 (195)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTC--CCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGC-----------C
T ss_pred CCceEEEEECCCCCCHHHHHHHHHcCCCCccC--CCccceEEEEEEEEECCeEEEEEEEeCCCchhhh-----------h
Confidence 34589999999999999999999987643221 1222222222333331 12468999999977532 1
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|++++.+... ..++..+..... ....|+++|+||+|+...
T Consensus 80 ~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~p~ilv~nK~Dl~~~ 136 (195)
T 1x3s_A 80 LTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT-RNDIVNMLVGNKIDKENR 136 (195)
T ss_dssp SHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS-CSCCEEEEEEECTTSSSC
T ss_pred hhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-cCCCcEEEEEECCcCccc
Confidence 22234567899999999985422222 334444433221 123689999999999543
No 97
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.69 E-value=4.7e-17 Score=114.67 Aligned_cols=118 Identities=22% Similarity=0.159 Sum_probs=56.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC--cccccccCCCCccee--eEEEEEEEeC---CcEEEEEeCCCCCCCCCChHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGR--RAFKSRASSSGVTST--CEMQRTVLKD---GQVVNVIDTPGLFDFSAGSEFVGK 92 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~--~~~~~~~~~~~~t~~--~~~~~~~~~~---~~~~~~iDtpG~~~~~~~~~~~~~ 92 (174)
..+|+++|++|+|||||+|++++. ..... ...|.. .....+.+.. ...+.++||||...
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------- 85 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSKGSKFLKD----YAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDL---------- 85 (208)
T ss_dssp EEEEEEC--------------------------------------CEEEECTTSSEEEEEEEEETTTTHH----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCCcccCC----CCCccceEEEEEEEEECCcccEEEEEEEECCCcHH----------
Confidence 479999999999999999999987 32111 112222 2223333412 34689999999854
Q ss_pred HHHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh-hhcCcEEEEEeCcCCCC
Q 030624 93 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 152 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~iv~tk~D~~~ 152 (174)
+.......+..+|++++|+|.+++.+... ..++..+...... ....|+++|+||+|+..
T Consensus 86 -~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 86 -YKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp -HHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred -HHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 44556667889999999999985433222 4555555554320 01369999999999976
No 98
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.9e-16 Score=110.92 Aligned_cols=120 Identities=23% Similarity=0.185 Sum_probs=74.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
...+|+++|++|+|||||+|+|++.............+. ...... .. ..+.++||||..+. ..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~ 71 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTY---RQVISC-DKSVCTLQITDTTGSHQF-----------PA 71 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEE---EEEEEE-TTEEEEEEEEECCGGGSC-----------HH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccce---eEEEEE-CCEEEEEEEEeCCChHHh-----------HH
Confidence 348999999999999999999998654222111111111 111222 22 36889999997752 12
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|.++..+... ..++..+.+........|+++|+||+|+...
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~ 129 (199)
T 2gf0_A 72 MQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR 129 (199)
T ss_dssp HHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred HHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence 22233445699999999984332222 3455556555332223699999999999753
No 99
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.68 E-value=3e-16 Score=115.59 Aligned_cols=120 Identities=22% Similarity=0.271 Sum_probs=78.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|++|+|||||+|+|++.... .+ ...+.|.........+ ++..+.++||||+.+...... ...+.+..
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~~~~~~~~- 76 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGLRQH-VG-NWPGVTVEKKEGIMEY-REKEFLVVDLPGIYSLTAHSI--DELIARNF- 76 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTTCEE-EE-ECTTSSCEEEEEEEEE-TTEEEEEEECCCCSCCCSSCH--HHHHHHHH-
T ss_pred eeEEEEECCCCCCHHHHHHHHhCCCcc-cC-CCCCeEEEeeEEEEEE-CCceEEEEeCCCccccccCCH--HHHHHHHh-
Confidence 479999999999999999999998652 33 2344555555555556 677899999999987543221 11111111
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
....++|++++|+|+++ . .....+ +.+..... ..|+++++||+|+.
T Consensus 77 ~~~~~~d~vi~v~D~~~-~-~~~~~~---~~~~~~~~-~~p~ilv~NK~Dl~ 122 (271)
T 3k53_A 77 ILDGNADVIVDIVDSTC-L-MRNLFL---TLELFEME-VKNIILVLNKFDLL 122 (271)
T ss_dssp HHTTCCSEEEEEEEGGG-H-HHHHHH---HHHHHHTT-CCSEEEEEECHHHH
T ss_pred hhccCCcEEEEEecCCc-c-hhhHHH---HHHHHhcC-CCCEEEEEEChhcC
Confidence 12467899999999983 2 122222 22322111 15899999999965
No 100
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.68 E-value=9.7e-16 Score=112.14 Aligned_cols=120 Identities=23% Similarity=0.254 Sum_probs=78.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|.+|+|||||+|+|++.... .+ ..++.|.........+ .+..+.++||||+.+...... ...+.+...
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~-~~-~~pg~tv~~~~~~~~~-~~~~~~l~DtpG~~~~~~~~~--~e~v~~~~~ 79 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTGTKQY-VA-NWPGVTVEKKEGVFTY-KGYTINLIDLPGTYSLGYSSI--DEKIARDYL 79 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHTTCEE-EE-ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSSCCSSSH--HHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-cc-CCCCceEEEEEEEEEE-CCeEEEEEECCCcCccCCCCH--HHHHHHHHH
Confidence 478999999999999999999997743 22 2335555555555555 577899999999987543221 111211111
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
....+|++++|+|++ .+.. ...+...+.+ .. .|+++|+||+|+..
T Consensus 80 -~~~~~d~ii~V~D~t-~~~~-~~~~~~~l~~---~~--~pvilv~NK~Dl~~ 124 (258)
T 3a1s_A 80 -LKGDADLVILVADSV-NPEQ-SLYLLLEILE---ME--KKVILAMTAIDEAK 124 (258)
T ss_dssp -HHSCCSEEEEEEETT-SCHH-HHHHHHHHHT---TT--CCEEEEEECHHHHH
T ss_pred -hhcCCCEEEEEeCCC-chhh-HHHHHHHHHh---cC--CCEEEEEECcCCCC
Confidence 125789999999998 4322 2223333322 22 69999999999864
No 101
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.68 E-value=1.1e-16 Score=113.31 Aligned_cols=117 Identities=21% Similarity=0.147 Sum_probs=75.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 94 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~ 94 (174)
....+|+++|.+|+|||||+|++++....... ..|..... ..... .+ ..+.++||||..+..
T Consensus 23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~---------- 87 (207)
T 2fv8_A 23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVY----VPTVFENYVADIEV-DGKQVELALWDTAGQEDYD---------- 87 (207)
T ss_dssp SEEEEEEEEECTTSSHHHHHHHHHHSSCC-----------CCEEEEEEEE-TTEEEEEEEEECTTCTTCT----------
T ss_pred ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcC----CCcccceEEEEEEE-CCEEEEEEEEECCCcHHHH----------
Confidence 33489999999999999999999987643221 11111111 12233 33 368899999987632
Q ss_pred HHHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......+..+|++++|+|.++.-+... ..++..+.... . ..|+++|+||+|+...
T Consensus 88 -~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 88 -RLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-P--NVPIILVANKKDLRSD 144 (207)
T ss_dssp -TTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T--TCCEEEEEECGGGGGC
T ss_pred -HHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEchhhhcc
Confidence 233346788999999999984322222 35555555542 1 2699999999999765
No 102
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.68 E-value=3e-16 Score=108.85 Aligned_cols=118 Identities=21% Similarity=0.228 Sum_probs=72.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|++|+|||||+|+|++....... .+.+.......... .+. .+.++||||..+....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~~----------- 68 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNHFVDEY---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYSAM----------- 68 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSSCCCCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCC---CTT-----------
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCCCCCCC---CCCchheEEEEEEE-CCcEEEEEEEECCCcHHHHHH-----------
Confidence 479999999999999999999976632221 11122222222333 343 4678999997763321
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...++..+|++++|+|.++.-+... ..++..+...... ...|+++|+||+|+...
T Consensus 69 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~i~v~nK~Dl~~~ 124 (189)
T 4dsu_A 69 RDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDS-EDVPMVLVGNKCDLPSR 124 (189)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTC-SCCCEEEEEECTTSSSC
T ss_pred HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEECccCccc
Confidence 1123344699999999985432222 4455555554222 23689999999999754
No 103
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.68 E-value=6.9e-17 Score=122.48 Aligned_cols=126 Identities=17% Similarity=0.108 Sum_probs=80.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
.|+++|.+|||||||+|+|++..+... .....|.......+.+.....+.++||||+.+.......+...+.+.+..
T Consensus 160 ~V~lvG~~nvGKSTLln~L~~~~~~i~--~~~ftTl~p~~g~v~~~~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~- 236 (342)
T 1lnz_A 160 DVGLVGFPSVGKSTLLSVVSSAKPKIA--DYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAHQGVGLGHQFLRHIER- 236 (342)
T ss_dssp CEEEESSTTSSHHHHHHHSEEECCEES--STTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHH-
T ss_pred eeeeeCCCCCCHHHHHHHHHcCCCccc--cCCccccCceEEEEEeCCCceEEEecCCCCcccccccchhHHHHHHHHHh-
Confidence 589999999999999999998753211 22233444444445553347899999999765322233344445554443
Q ss_pred cCCceEEEEEEeCCCC--CCHH-H-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSR--FSQE-E-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~--~~~~-~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+|++++|+|+++. -... + ..+++.+..+.......|+++|+||+|+...
T Consensus 237 ---~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 237 ---TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp ---CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred ---ccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 4999999999741 2222 2 4455555554221123689999999999754
No 104
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.68 E-value=1.2e-16 Score=109.08 Aligned_cols=119 Identities=23% Similarity=0.123 Sum_probs=67.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|++|+|||||+|.+++....... ....+.......... ++ ..+.++||||..+.... ..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~D~~g~~~~~~~----------~~ 69 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGGLQGDHAH--EMENSEDTYERRIMV-DKEEVTLIVYDIWEQGDAGGW----------LQ 69 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC--------------CEEEEEEEE-TTEEEEEEEECCCCC------------------
T ss_pred EEEEEECCCCCCHHHHHHHHHhccCcccc--cCCCcCCeeeEEEEE-CCeEEEEEEEECCCccccchh----------hh
Confidence 68999999999999999999876532221 122223233333333 33 45789999998763210 11
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++..+|++++|+|.+++-+... ..++..+...... ...|+++|+||+|+...
T Consensus 70 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~p~ilv~nK~Dl~~~ 124 (169)
T 3q85_A 70 DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARS 124 (169)
T ss_dssp CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCGGG
T ss_pred hhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccC-CCCCEEEEeeCcchhhc
Confidence 112334699999999985322222 3444444443221 13699999999998743
No 105
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.68 E-value=8.8e-17 Score=126.30 Aligned_cols=121 Identities=23% Similarity=0.252 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+|+++|++|+|||||+|+|++....... ...+.|.........+ ++..+.++||||+.++. +.......+....
T Consensus 225 ~kV~ivG~~nvGKSSLln~L~~~~~a~v~-~~~gtT~d~~~~~i~~-~g~~v~liDT~G~~~~~---~~ve~~gi~~~~~ 299 (462)
T 3geh_A 225 LKVAIVGRPNVGKSSLLNAWSQSDRAIVT-DLPGTTRDVVESQLVV-GGIPVQVLDTAGIRETS---DQVEKIGVERSRQ 299 (462)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHBSCCS-CCTTCCHHHHHHEEEE-TTEEEEECC-----------------------C
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCCccccc-CCCCeeEEEEEEEEEE-CCEEEEEEECCccccch---hHHHHHHHHHHhh
Confidence 67999999999999999999986532121 2233444433334444 67889999999997632 2222222334445
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|.+++.+..+..+++.+.. .|+++|+||+|+...
T Consensus 300 ~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~~-------~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 300 AANTADLVLLTIDAATGWTTGDQEIYEQVKH-------RPLILVMNKIDLVEK 345 (462)
T ss_dssp CCCSCSEEEEEEETTTCSCHHHHHHHHHHTT-------SCEEEEEECTTSSCG
T ss_pred hhhcCCEEEEEeccCCCCCHHHHHHHHhccC-------CcEEEEEECCCCCcc
Confidence 6788999999999987888777666554432 589999999999764
No 106
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.67 E-value=3.3e-16 Score=109.42 Aligned_cols=117 Identities=18% Similarity=0.111 Sum_probs=77.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
...+|+++|++|+|||||++.+++.......... +.........+ .+ ..+.+|||||..+.. .
T Consensus 17 ~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t---~~~~~~~~~~~-~~~~~~~~i~D~~G~~~~~-----------~ 81 (194)
T 2atx_A 17 LMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPT---VFDHYAVSVTV-GGKQYLLGLYDTAGQEDYD-----------R 81 (194)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCS---SCCCEEEEEES-SSCEEEEEEECCCCSSSST-----------T
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCc---ccceeEEEEEE-CCEEEEEEEEECCCCcchh-----------H
Confidence 4479999999999999999999977532111111 11111122323 33 467899999988632 2
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|.+++-+... ..++..+.+... ..|+++|+||+|+...
T Consensus 82 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 82 LRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYAP---NVPFLLIGTQIDLRDD 137 (194)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TCCEEEEEECTTSTTC
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEEChhhccc
Confidence 33456788999999999985432222 245666665422 2699999999999764
No 107
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.67 E-value=5.4e-16 Score=108.23 Aligned_cols=135 Identities=9% Similarity=0.050 Sum_probs=80.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcceeeEEEEE---EE-eCCcEEEEEeCCCCCCCCCChH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVTSTCEMQRT---VL-KDGQVVNVIDTPGLFDFSAGSE 88 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~------~~~~t~~~~~~~~---~~-~~~~~~~~iDtpG~~~~~~~~~ 88 (174)
...+|+++|++|+|||||++.+.+......... ....|........ .. .....+.++||||....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----- 87 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFY----- 87 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSC-----
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChHHH-----
Confidence 347999999999999999999887543211100 0111222221111 01 01235899999998762
Q ss_pred HHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhh----hhcCcEEEEEeCcCCCCCC-hhhHHHHhc
Q 030624 89 FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK----KIFDYMIVVFTGGDELEDN-DETLEDYLG 163 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~----~~~~~~~iv~tk~D~~~~~-~~~~~~~~~ 163 (174)
......++..+|++++|+|.+++....+...++.+...+.. ....|+++|+||+|+.... ....+++.+
T Consensus 88 ------~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~ 161 (198)
T 3t1o_A 88 ------NASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVEMVRAVVD 161 (198)
T ss_dssp ------SHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTCCCHHHHHHHHC
T ss_pred ------HHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccccCHHHHHHHHH
Confidence 23344467888999999999854444444444444333221 1336999999999997642 123344444
Q ss_pred c
Q 030624 164 R 164 (174)
Q Consensus 164 ~ 164 (174)
+
T Consensus 162 ~ 162 (198)
T 3t1o_A 162 P 162 (198)
T ss_dssp T
T ss_pred h
Confidence 3
No 108
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.67 E-value=3.5e-16 Score=117.37 Aligned_cols=138 Identities=14% Similarity=0.163 Sum_probs=79.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccc--CCCCc----ceee----------------------------------
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA--SSSGV----TSTC---------------------------------- 59 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~--~~~~~----t~~~---------------------------------- 59 (174)
.++|+++|.+|+|||||+|+|+|......+. .+..+ +...
T Consensus 24 ~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (315)
T 1jwy_B 24 LPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREEII 103 (315)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHHHH
T ss_pred CCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHHHH
Confidence 4799999999999999999999987522221 11101 0000
Q ss_pred -----------------EEEEEEEeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCceEEEEEEeC-CCCCC
Q 030624 60 -----------------EMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVLVVFSV-RSRFS 119 (174)
Q Consensus 60 -----------------~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il~v~~~-~~~~~ 119 (174)
....+.......+.++||||+.+... ..+.....+...+..++..+|++++|++. +..+.
T Consensus 104 ~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~ 183 (315)
T 1jwy_B 104 RDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLA 183 (315)
T ss_dssp HHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCST
T ss_pred HHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchh
Confidence 00001122345799999999975221 11223344555555566788999999986 43444
Q ss_pred HHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624 120 QEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 163 (174)
Q Consensus 120 ~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 163 (174)
..+ ..+++.+.. ...|+++|+||+|+.... ....++++
T Consensus 184 ~~~~~~i~~~~~~-----~~~~~i~v~NK~Dl~~~~-~~~~~~~~ 222 (315)
T 1jwy_B 184 NSDALQLAKEVDP-----EGKRTIGVITKLDLMDKG-TDAMEVLT 222 (315)
T ss_dssp TCSHHHHHHHHCS-----SCSSEEEEEECTTSSCSS-CCCHHHHT
T ss_pred hhHHHHHHHHhCC-----CCCcEEEEEcCcccCCcc-hHHHHHHh
Confidence 333 244433322 126999999999998654 22344444
No 109
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.67 E-value=3.4e-16 Score=106.09 Aligned_cols=118 Identities=20% Similarity=0.219 Sum_probs=72.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+|+++|++|+|||||+|.+++....... ...+.......... .+ ..+.++||||..+.. ..
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~---~~~~~~~~~~~~~~-~~~~~~~~~~D~~G~~~~~-----------~~ 67 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEC---DPTIEDSYRKQVVI-DGETCLLDILDTAGQEEYS-----------AM 67 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSSCCSCC---CTTCCEEEEEEEEE-TTEEEEEEEEECCCCSSCC-----------HH
T ss_pred eeEEEEECCCCCCHHHHHHHHHhCcCcccc---CCccceEEEEEEEE-CCEEEEEEEEECCCchhhh-----------HH
Confidence 468999999999999999999976532221 11111111222222 33 347899999987632 11
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...++..+|++++|+|.++..+... ..++..+...... ...|+++|+||+|+...
T Consensus 68 ~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~-~~~p~iiv~nK~Dl~~~ 123 (166)
T 2ce2_X 68 RDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDS-DDVPMVLVGNKSDLAAR 123 (166)
T ss_dssp HHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTC-SCCCEEEEEECTTCSCC
T ss_pred HHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCcEEEEEEchhhhhc
Confidence 1122334699999999984432222 4555555554321 13689999999998763
No 110
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.67 E-value=2.5e-16 Score=109.03 Aligned_cols=117 Identities=20% Similarity=0.098 Sum_probs=76.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+..+|+++|++|+|||||++++++............ ......... .+ ..+.++||||..+. ..
T Consensus 4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~---~~~~~~~~~-~~~~~~~~i~Dt~G~~~~-----------~~ 68 (186)
T 1mh1_A 4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVF---DNYSANVMV-DGKPVNLGLWDTAGQEDY-----------DR 68 (186)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSC---CEEEEEEEE-TTEEEEEEEECCCCSGGG-----------TT
T ss_pred cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccc---ceeEEEEEE-CCEEEEEEEEECCCCHhH-----------HH
Confidence 357999999999999999999997653222111111 111112222 33 34679999998752 23
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|.+++.+... ..++..+..... ..|+++|+||+|+...
T Consensus 69 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 69 LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 124 (186)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHST---TSCEEEEEECHHHHTC
T ss_pred HHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhCC---CCCEEEEeEccccccc
Confidence 33456788999999999985433333 245666655432 3699999999999764
No 111
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.67 E-value=2.5e-16 Score=110.51 Aligned_cols=124 Identities=23% Similarity=0.142 Sum_probs=73.1
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 030624 16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE 93 (174)
Q Consensus 16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~ 93 (174)
+.....+|+++|.+|+|||||+|.+++........ ...+.......+.+ ++ ..+.+|||||..... . .
T Consensus 19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~l~i~Dt~g~~~~~---~----~ 88 (195)
T 3cbq_A 19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHE--PENPEDTYERRIMV-DKEEVTLVVYDIWEQGDAG---G----W 88 (195)
T ss_dssp ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGT--TTSCTTEEEEEEEE-TTEEEEEEEECCCCCSGGG---H----H
T ss_pred CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCC--CCcccceEEEEEEE-CCEEEEEEEEecCCCccch---h----h
Confidence 33445899999999999999999998654221111 11122222222333 33 356789999987521 1 1
Q ss_pred HHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+. ..++..+|++++|+|.+++-+... ..++..+...... ...|+++|.||+|+...
T Consensus 89 ~~---~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~nK~Dl~~~ 145 (195)
T 3cbq_A 89 LR---DHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPH-HDLPVILVGNKSDLARS 145 (195)
T ss_dssp HH---HHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTT-SCCCEEEEEECTTCTTT
T ss_pred hH---HHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEeechhcccc
Confidence 11 123345699999999985332222 3455555443211 23689999999999754
No 112
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.67 E-value=2.3e-16 Score=123.60 Aligned_cols=127 Identities=21% Similarity=0.221 Sum_probs=76.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh-HHHHH-HHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVGK-EIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~-~~~~~-~~~~~ 97 (174)
..+++++|++|+|||||+|+|++....... ...+.|.......+.+ ++..+.++||||+....... +.... ...+
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~- 256 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR- 256 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCSCC-----------CCSCCHH-
T ss_pred CceEEEECCCCCCHHHHHHHHhCCcccccC-CCCCCcCCceEEEEEE-CCEEEEEEECCCCccccccchhhHHHHHHHH-
Confidence 479999999999999999999997642222 2233444433344555 67788999999986422111 00000 0000
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
....+..+|++++++|++++.+..+..+.+.+... ..++++|+||+|+....
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~~~~~~~i~~~l~~~-----~~~~ilv~NK~Dl~~~~ 308 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGITRQDQRMAGLMERR-----GRASVVVFNKWDLVVHR 308 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCCCHHHHHHHHHHHHT-----TCEEEEEEECGGGSTTG
T ss_pred HHHHHhhCCEEEEEEeCCCCCCHHHHHHHHHHHHc-----CCCEEEEEECccCCCch
Confidence 01123446999999999877777665554444432 26899999999998654
No 113
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.67 E-value=4.6e-16 Score=123.20 Aligned_cols=120 Identities=16% Similarity=0.228 Sum_probs=81.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc-----------------------------ccccCCCCcceeeEEEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAF-----------------------------KSRASSSGVTSTCEMQRTVLKDG 69 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~~~~~~~~~ 69 (174)
+..+|+++|.+++|||||+|.|++.... .......+.|.......+.+ .+
T Consensus 32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~ 110 (483)
T 3p26_A 32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 110 (483)
T ss_dssp CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEEC-SS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEec-CC
Confidence 3479999999999999999999754110 00011224555555555555 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHHhhhhcCcEE
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI 142 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~~ 142 (174)
..+.++||||+.+ +...+...+..+|++++|+|++++ +.....+.+..+... + .++++
T Consensus 111 ~~~~iiDTPG~~~-----------f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~-~---~~~iI 175 (483)
T 3p26_A 111 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G---IHNLI 175 (483)
T ss_dssp CEEEEECCCCCGG-----------GHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHHT-T---CCCEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHHc-C---CCcEE
Confidence 8899999999976 344444556778999999999865 345555555544442 2 14799
Q ss_pred EEEeCcCCCCCC
Q 030624 143 VVFTGGDELEDN 154 (174)
Q Consensus 143 iv~tk~D~~~~~ 154 (174)
+|+||+|+....
T Consensus 176 vviNK~Dl~~~~ 187 (483)
T 3p26_A 176 IAMNKMDNVDWS 187 (483)
T ss_dssp EEEECGGGGTTC
T ss_pred EEEECcCcccch
Confidence 999999998643
No 114
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.67 E-value=7.8e-16 Score=109.44 Aligned_cols=117 Identities=21% Similarity=0.127 Sum_probs=64.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+..+|+++|.+|+|||||+|.+++........ . .+.......... ++ ..+.+|||||..+ +..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~--~-t~~~~~~~~~~~-~~~~~~l~l~Dt~G~~~-----------~~~ 97 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFADGAFPESYT--P-TVFERYMVNLQV-KGKPVHLHIWDTAGQDD-----------YDR 97 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC-------C--C-CCCEEEEEEEEE-TTEEEEEEEEEC-------------------
T ss_pred ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCC--C-ccceeEEEEEEE-CCEEEEEEEEECCCchh-----------hhH
Confidence 34789999999999999999999865322111 1 111111122223 33 3688999999775 233
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
....++..+|++++|+|.+++.+... ..++..+.... ...|+++|+||+|+...
T Consensus 98 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 98 LRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC---KKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp -------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECGGGGSC
T ss_pred HHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEEChhhhcc
Confidence 33446678899999999985433222 23555555432 12689999999999765
No 115
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.67 E-value=1.8e-16 Score=123.15 Aligned_cols=127 Identities=20% Similarity=0.185 Sum_probs=83.8
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
+.....+|+++|+.|+|||||+|+|++....... ...+.|.........+.....+.+|||||+.++............
T Consensus 30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~-~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l~~~~~~~~~ 108 (423)
T 3qq5_A 30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVS-DYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGELGRLRVEKAR 108 (423)
T ss_dssp --CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCCTTCCCCHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccC-CCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccchhHHHHHHHH
Confidence 3445689999999999999999999987642222 234455555566666633348999999999876543222222222
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
..+..+|++++|+|+ .....+..+++.+.+.. .|+++|+||+|+....
T Consensus 109 ----~~l~~aD~vllVvD~--~~~~~~~~~l~~l~~~~-----~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 109 ----RVFYRADCGILVTDS--APTPYEDDVVNLFKEME-----IPFVVVVNKIDVLGEK 156 (423)
T ss_dssp ----HHHTSCSEEEEECSS--SCCHHHHHHHHHHHHTT-----CCEEEECCCCTTTTCC
T ss_pred ----HHHhcCCEEEEEEeC--CChHHHHHHHHHHHhcC-----CCEEEEEeCcCCCCcc
Confidence 345677999999998 45566777877777652 6999999999998764
No 116
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=99.67 E-value=7e-16 Score=117.96 Aligned_cols=124 Identities=16% Similarity=0.220 Sum_probs=85.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.-..+|+++|.+++|||||+|+|++.... . ...+..|.......+.+ .+..+.++||||+.+..........++...
T Consensus 70 ~g~a~V~ivG~PNvGKSTL~n~Lt~~~~~-v-~~~pftT~~~~~g~~~~-~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~ 146 (376)
T 4a9a_A 70 TGVASVGFVGFPSVGKSTLLSKLTGTESE-A-AEYEFTTLVTVPGVIRY-KGAKIQMLDLPGIIDGAKDGRGRGKQVIAV 146 (376)
T ss_dssp CSSEEEEEECCCCHHHHHHHHHHHSBCCC-G-GGTCSSCCCEEEEEEEE-TTEEEEEEECGGGCCC-----CHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHhCCCCc-c-cCCCCceeeeeeEEEEe-CCcEEEEEeCCCccCCchhhhHHHHHHHHH
Confidence 33478999999999999999999997642 2 24456777777666666 788999999999998655555566667766
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHHHHH-HHHHHHHhhh-hcCcEEEEEeCcCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEEAAL-HSLQTLFGKK-IFDYMIVVFTGGDEL 151 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l-~~l~~~~~~~-~~~~~~iv~tk~D~~ 151 (174)
++.+ |++++|+|+.+++ .+.+.+ ..|... +.. ..+|.++++||.|..
T Consensus 147 i~~a----d~il~vvD~~~p~--~~~~~i~~EL~~~-~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 147 ARTC----NLLFIILDVNKPL--HHKQIIEKELEGV-GIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp HHHC----SEEEEEEETTSHH--HHHHHHHHHHHHT-TEEETCCCCCEEEEECSSS
T ss_pred HHhc----CccccccccCccH--HHHHHHHHHHHHh-hHhhccCChhhhhhHhhhh
Confidence 6655 9999999998543 222222 233332 332 235788999999974
No 117
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.66 E-value=4.3e-16 Score=110.01 Aligned_cols=118 Identities=20% Similarity=0.098 Sum_probs=76.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
.+..+|+++|.+|+|||||++.+++....... .+.+.......... ++. .+.++||||..+ +.
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~ 92 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGLED-----------YD 92 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHSCCCC-C---CCCSEEEEEEEEEC-C-CEEEEEEEEECCSGG-----------GT
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCc---CCeecceeEEEEEE-CCEEEEEEEEECCCchh-----------hH
Confidence 44589999999999999999999976532121 11122222222223 333 456999999865 23
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......+..+|++++|+|.+++.+.... .++..+.... ...|+++|+||+|+...
T Consensus 93 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 93 RLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC---PNTPIILVGTKLDLRDD 149 (204)
T ss_dssp TTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC---SSCCEEEEEECHHHHTC
T ss_pred HHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC---CCCCEEEEEechhhccc
Confidence 3444577889999999999854333332 4555555542 22699999999999765
No 118
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.66 E-value=6.6e-17 Score=114.97 Aligned_cols=117 Identities=14% Similarity=0.067 Sum_probs=73.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeE--EEEEEEeC-----------CcEEEEEeCCCCCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCE--MQRTVLKD-----------GQVVNVIDTPGLFDFSAG 86 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~~~-----------~~~~~~iDtpG~~~~~~~ 86 (174)
..+|+++|++|+|||||+|+|++...... ...|.... ...+.+.. ...+.+|||||..+
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~---- 96 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDNKFNPK----FITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQER---- 96 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCSCCCCE----EEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHH----
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCcC----CCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHh----
Confidence 47899999999999999999998653211 11222211 12222312 35689999999542
Q ss_pred hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhh--hcCcEEEEEeCcCCCCC
Q 030624 87 SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKK--IFDYMIVVFTGGDELED 153 (174)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~--~~~~~~iv~tk~D~~~~ 153 (174)
+...+...+..+|++++|+|+++..+... ...++....... ...|+++|+||+|+...
T Consensus 97 -------~~~~~~~~~~~~d~iilV~D~~~~~s~~~--~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 97 -------FRSLTTAFFRDAMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp -------HHHHHHHHHTTCCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred -------HHhHHHHHhcCCCEEEEEEECcCHHHHHH--HHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 44445556778899999999984322222 112233222111 23689999999999653
No 119
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.66 E-value=4.6e-16 Score=109.51 Aligned_cols=117 Identities=19% Similarity=0.128 Sum_probs=76.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
...+|+++|.+|+|||||++.+++............... ...... .+ ..+.++||||..+ +..
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~---~~~~~~-~~~~~~l~i~Dt~G~~~-----------~~~ 88 (201)
T 2gco_A 24 IRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY---IADIEV-DGKQVELALWDTAGQED-----------YDR 88 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC---EEEEEE-TTEEEEEEEECCCCSGG-----------GTT
T ss_pred cceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceE---EEEEEE-CCEEEEEEEEECCCchh-----------HHH
Confidence 347899999999999999999998664322111111111 112233 33 3688999999765 223
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|.++.-+... ..++..+.... . ..|+++|+||+|+...
T Consensus 89 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~--~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 89 LRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-P--NVPIILVGNKKDLRQD 144 (201)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T--TCCEEEEEECGGGTTC
T ss_pred HHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEecHHhhcC
Confidence 33456788999999999985322222 34555555542 1 2699999999999765
No 120
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.66 E-value=3.7e-15 Score=103.45 Aligned_cols=122 Identities=17% Similarity=0.224 Sum_probs=76.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
.+..+|+++|++|+|||||+|+|++...+.. ...+.|.......+.+ ++..+.++||||..+...... ...+...
T Consensus 5 ~~~~~i~lvG~~gvGKStL~~~l~~~~~~~~--~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~--~~~~~~~ 79 (188)
T 2wjg_A 5 MKSYEIALIGNPNVGKSTIFNALTGENVYIG--NWPGVTVEKKEGEFEY-NGEKFKVVDLPGVYSLTANSI--DEIIARD 79 (188)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHTTCEEEE--ECTTSCCEEEEEEEEE-TTEEEEEEECCCCSCCSSSSH--HHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcccc--CCCCeeccceEEEEEe-CCcEEEEEECCCcCccccccH--HHHHHHH
Confidence 3558999999999999999999998754322 1233344444444555 678899999999987532211 1111111
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.. ....+|++++++|.+ .+ .....++..+.. . ..|+++|.||+|+..
T Consensus 80 ~~-~~~~~~~~i~v~d~~-~~-~~~~~~~~~~~~---~--~~piilv~nK~Dl~~ 126 (188)
T 2wjg_A 80 YI-INEKPDLVVNIVDAT-AL-ERNLYLTLQLME---M--GANLLLALNKMDLAK 126 (188)
T ss_dssp HH-HHHCCSEEEEEEEGG-GH-HHHHHHHHHHHT---T--TCCEEEEEECHHHHH
T ss_pred HH-hccCCCEEEEEecch-hH-HHHHHHHHHHHh---c--CCCEEEEEEhhhccc
Confidence 11 113469999999987 32 112333333322 2 268999999999854
No 121
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.66 E-value=3.7e-16 Score=111.17 Aligned_cols=117 Identities=14% Similarity=0.030 Sum_probs=77.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
....+|+++|.+|+|||||++.+++....... ..|...... ..... ....+.+|||||... +.
T Consensus 25 ~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~ 89 (214)
T 3q3j_B 25 VARCKLVLVGDVQCGKTAMLQVLAKDCYPETY----VPTVFENYTACLETEEQRVELSLWDTSGSPY-----------YD 89 (214)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEEC--CEEEEEEEEECCSGG-----------GT
T ss_pred cceEEEEEECcCCCCHHHHHHHHhcCCCCCCc----CCeeeeeEEEEEEECCEEEEEEEEECCCCHh-----------HH
Confidence 34589999999999999999999987642221 122222211 12221 234688999999875 23
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.....++..+|++++|+|.++.-+... ..|++.+.... . ..|+++|.||+|+..
T Consensus 90 ~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 90 NVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-P--STRVLLIGCKTDLRT 145 (214)
T ss_dssp TTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-T--TSEEEEEEECGGGGG
T ss_pred HHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-C--CCCEEEEEEChhhcc
Confidence 344457788999999999985443333 45666666653 2 269999999999965
No 122
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.66 E-value=2.7e-16 Score=109.12 Aligned_cols=116 Identities=16% Similarity=0.078 Sum_probs=75.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
...+|+++|++|+|||||+|.+++....... ..|..... ...... ....+.+|||||.... ..
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~-----------~~ 70 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKDCFPENY----VPTVFENYTASFEIDTQRIELSLWDTSGSPYY-----------DN 70 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSC----CCCSEEEEEEEEECSSCEEEEEEEEECCSGGG-----------TT
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCccceeEEEEEEECCEEEEEEEEECCCChhh-----------hh
Confidence 4589999999999999999999986532111 11211111 122221 1246899999997652 22
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
....++..+|++++|+|.+++.+... ..++..+.+.. . ..|+++|.||+|+..
T Consensus 71 ~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 71 VRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P--NTKMLLVGCKSDLRT 125 (184)
T ss_dssp TGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-T--TCEEEEEEECGGGGG
T ss_pred hHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C--CCCEEEEEEcchhhc
Confidence 23446788999999999985433232 34555555542 1 269999999999974
No 123
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.65 E-value=5.7e-17 Score=115.75 Aligned_cols=122 Identities=20% Similarity=0.108 Sum_probs=75.6
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
.....+|+++|.+|+|||||+|.++............+.+.......... ....+.++||||.......
T Consensus 12 ~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~-~~~~~~i~Dt~G~~~~~~~---------- 80 (221)
T 3gj0_A 12 PQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNR-GPIKFNVWDTAGQEKFGGL---------- 80 (221)
T ss_dssp CCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETT-EEEEEEEEEECSGGGTSCC----------
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECC-EEEEEEEEeCCChHHHhHH----------
Confidence 34458999999999999999999654332211112222233222222211 2346899999997653221
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...++..+|++++|+|.++..+... ..++..+..... ..|+++|+||+|+...
T Consensus 81 -~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 81 -RDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCE---NIPIVLCGNKVDIKDR 134 (221)
T ss_dssp -CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHST---TCCEEEEEECTTSSSC
T ss_pred -HHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCC---CCCEEEEEECCccccc
Confidence 2234567899999999985433222 455555555431 2699999999998754
No 124
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.65 E-value=3.9e-16 Score=124.48 Aligned_cols=119 Identities=14% Similarity=0.192 Sum_probs=83.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc--cc------------------cCCCCcceeeEEEEEEEeCCcEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFK--SR------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTP 78 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~--~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtp 78 (174)
+.++|+++|++|+|||||+|+|+...... .+ ....+.|.........+ .+..+.+||||
T Consensus 12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~liDTP 90 (528)
T 3tr5_A 12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPY-KDYLINLLDTP 90 (528)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEE-TTEEEEEECCC
T ss_pred cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEe-CCEEEEEEECC
Confidence 34899999999999999999996211000 00 00123344444555666 77889999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 79 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
|+.++. ..+...+..+|++++|+|++++....+...+..+... . .|+++++||+|+...+
T Consensus 91 G~~df~-----------~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~~~~---~--iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 91 GHADFT-----------EDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVCRLR---H--TPIMTFINKMDRDTRP 150 (528)
T ss_dssp CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHHTT---T--CCEEEEEECTTSCCSC
T ss_pred CchhHH-----------HHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHHc---C--CCEEEEEeCCCCcccc
Confidence 998743 2233455677999999999988888887776655443 2 6999999999997654
No 125
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.65 E-value=7e-16 Score=122.01 Aligned_cols=119 Identities=18% Similarity=0.255 Sum_probs=82.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccc-----ccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAF-----KSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGK 92 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~-----~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~ 92 (174)
.+..+|+++|+.++|||||+++|++.... .......+.|.........+ .+..+.++||||+.+
T Consensus 17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~i~iiDtPGh~~---------- 85 (482)
T 1wb1_A 17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKL-ENYRITLVDAPGHAD---------- 85 (482)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEE-TTEEEEECCCSSHHH----------
T ss_pred CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEE-CCEEEEEEECCChHH----------
Confidence 44589999999999999999999986510 01112234555555555555 677899999999753
Q ss_pred HHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 93 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+...+...+..+|++++|+|++++....+.+.+..+... + .|.++++||+|+...
T Consensus 86 -~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~-~----ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 86 -LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHF-N----IPIIVVITKSDNAGT 140 (482)
T ss_dssp -HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHT-T----CCBCEEEECTTSSCH
T ss_pred -HHHHHHHHHhhCCEEEEEEecCCCccHHHHHHHHHHHHc-C----CCEEEEEECCCcccc
Confidence 444445567788999999999878888888887765543 1 467999999999863
No 126
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.65 E-value=2.3e-16 Score=111.65 Aligned_cols=122 Identities=16% Similarity=0.091 Sum_probs=76.2
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEe-CCcEEEEEeCCCCCCCCCChHHH
Q 030624 13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLK-DGQVVNVIDTPGLFDFSAGSEFV 90 (174)
Q Consensus 13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~-~~~~~~~iDtpG~~~~~~~~~~~ 90 (174)
++.......+|+++|++|+|||||+|.+++...... ...|..... ..+... ....+.+|||||....
T Consensus 21 m~~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~----~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~------- 89 (205)
T 1gwn_A 21 MDPNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPEN----YVPTVFENYTASFEIDTQRIELSLWDTSGSPYY------- 89 (205)
T ss_dssp ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSS----CCCCSEEEEEEEEESSSSEEEEEEEEECCSGGG-------
T ss_pred CCcccceeeEEEEECCCCCCHHHHHHHHhcCCCCCC----cCCccceeEEEEEEECCEEEEEEEEeCCCcHhh-------
Confidence 444445568999999999999999999998654211 111221111 122221 1246899999997652
Q ss_pred HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 91 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
......++..+|++++|+|.+++.+... ..|+..+.+.. . ..|+++|.||+|+..
T Consensus 90 ----~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~--~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 90 ----DNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-P--NTKMLLVGCKSDLRT 146 (205)
T ss_dssp ----TTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-T--TCEEEEEEECGGGGG
T ss_pred ----hHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-C--CCCEEEEEechhhcc
Confidence 2223446788999999999985433222 34555555542 1 268999999999974
No 127
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.65 E-value=1.4e-15 Score=114.98 Aligned_cols=116 Identities=13% Similarity=0.042 Sum_probs=74.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|.+|+|||||++.|++...... .+|.........+ .+..+.++||||..... ....
T Consensus 165 ~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-----~pT~~~~~~~~~~-~~~~l~i~Dt~G~~~~~-----------~~~~ 227 (329)
T 3o47_A 165 EMRILMVGLDAAGKTTILYKLKLGEIVTT-----IPTIGFNVETVEY-KNISFTVWDVGGQDKIR-----------PLWR 227 (329)
T ss_dssp SEEEEEEESTTSSHHHHHHHTCSSCCEEE-----EEETTEEEEEEEE-TTEEEEEEECC-----C-----------CSHH
T ss_pred cceEEEECCCCccHHHHHHHHhCCCCCCc-----ccccceEEEEEec-CcEEEEEEECCCCHhHH-----------HHHH
Confidence 35899999999999999999998764221 1244444455555 67889999999976532 2233
Q ss_pred hccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.++..+|++++|+|+++.-+... ..++..+..... ....|+++|+||+|+...
T Consensus 228 ~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~-~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 228 HYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDE-LRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp HHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGG-GTTCEEEEEEECTTSTTC
T ss_pred HHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhc-cCCCeEEEEEECccCCcc
Confidence 45567899999999975444333 222222222111 113689999999999765
No 128
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.65 E-value=1.8e-15 Score=118.47 Aligned_cols=120 Identities=18% Similarity=0.213 Sum_probs=82.3
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccccc-----------------------------ccCCCCcceeeEEEEEEEe
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKS-----------------------------RASSSGVTSTCEMQRTVLK 67 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~-----------------------------~~~~~~~t~~~~~~~~~~~ 67 (174)
.....+++++|+.++|||||++.|++...... .....+.|.......+.+
T Consensus 14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~- 92 (439)
T 3j2k_7 14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFET- 92 (439)
T ss_pred CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEec-
Confidence 34458999999999999999999965421000 001134566666666666
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCC-------HHHHHHHHHHHHHHhhhhcCc
Q 030624 68 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS-------QEEEAALHSLQTLFGKKIFDY 140 (174)
Q Consensus 68 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~-------~~~~~~l~~l~~~~~~~~~~~ 140 (174)
.+..+.++||||+.+ +.+.+...+..+|++++|+|++++.. ..+.+.+..+... + .++
T Consensus 93 ~~~~~~iiDTPGh~~-----------f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~-~---v~~ 157 (439)
T 3j2k_7 93 EKKHFTILDAPGHKS-----------FVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA-G---VKH 157 (439)
T ss_pred CCeEEEEEECCChHH-----------HHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHHc-C---CCe
Confidence 677899999999875 34444445667899999999986643 4566665544443 1 134
Q ss_pred EEEEEeCcCCCC
Q 030624 141 MIVVFTGGDELE 152 (174)
Q Consensus 141 ~~iv~tk~D~~~ 152 (174)
+++++||+|+..
T Consensus 158 iIvviNK~Dl~~ 169 (439)
T 3j2k_7 158 LIVLINKMDDPT 169 (439)
T ss_pred EEEEeecCCCcc
Confidence 899999999964
No 129
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.65 E-value=9.6e-16 Score=107.36 Aligned_cols=118 Identities=21% Similarity=0.176 Sum_probs=73.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEI 94 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~ 94 (174)
.+..+|+++|.+|+|||||+|++++....... ..|..... ..... .+ ..+.++||||..+ .. ..
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~----~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~----~~----~~ 92 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTKRFIWEY----DPTLESTYRHQATI-DDEVVSMEILDTAGQED----TI----QR 92 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHSCCCSCC----CTTCCEEEEEEEEE-TTEEEEEEEEECCCCCC----CH----HH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhCCCCccc----CCCCCceEEEEEEE-CCEEEEEEEEECCCCCc----cc----ch
Confidence 34589999999999999999999987542221 11111111 12223 33 4588999999885 11 11
Q ss_pred HHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
. .++..+|++++|+|++++-+... ..+++.+...... ...|+++|+||+|+...
T Consensus 93 ~----~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~-~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 93 E----GHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKP-KNVTLILVGNKADLDHS 147 (196)
T ss_dssp H----HHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTT-SCCCEEEEEECGGGGGG
T ss_pred h----hhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCC-CCCcEEEEEECcccccc
Confidence 1 22334599999999984332222 4455555554321 23689999999999753
No 130
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.64 E-value=8.1e-18 Score=118.32 Aligned_cols=120 Identities=20% Similarity=0.204 Sum_probs=73.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
....+|+++|.+|+|||||+|+|++....... ....+.......+.+ ++ ..+.++||||......
T Consensus 31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~--~~~~~~~~~~~~~~~-~~~~~~~~i~Dt~G~~~~~~---------- 97 (199)
T 3l0i_B 31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESY--ISTIGVDFKIRTIEL-DGKTIKLQIWDTAGQERFRT---------- 97 (199)
T ss_dssp SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHH--HHHHCCSEEEEEEEE-TTEEEEEEEECCTTCTTCCC----------
T ss_pred CcceEEEEECCCCCCHHHHHHHHhcCCCCCCc--CCcccceEEEEEEEE-CCEEEEEEEEECCCcHhHHH----------
Confidence 34589999999999999999999986532221 112222333333434 33 4689999999776332
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|+++..+... ..++..+...... ..|+++|+||+|+...
T Consensus 98 -~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~--~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 98 -ITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASE--NVNKLLVGNKCDLTTK 153 (199)
T ss_dssp -CSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-C--CSEEEEC-CCSSCC--
T ss_pred -HHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccC--CCCEEEEEECccCCcc
Confidence 22345678899999999985433222 3444444433221 3689999999998654
No 131
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.64 E-value=3.2e-16 Score=125.60 Aligned_cols=134 Identities=20% Similarity=0.327 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCccee-eEEE-----------------------------------
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTST-CEMQ----------------------------------- 62 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~-~~~~----------------------------------- 62 (174)
...+|+++|.+|+|||||+|+|++.............|.. ..+.
T Consensus 64 ~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~~~ 143 (550)
T 2qpt_A 64 GKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLNRF 143 (550)
T ss_dssp SCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCTTE
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccccc
Confidence 3479999999999999999999998743100111111111 0000
Q ss_pred -EEEEeCC---cEEEEEeCCCCCCCCCChHHHHH--HHHHHHHhccCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhh
Q 030624 63 -RTVLKDG---QVVNVIDTPGLFDFSAGSEFVGK--EIVKCIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGK 135 (174)
Q Consensus 63 -~~~~~~~---~~~~~iDtpG~~~~~~~~~~~~~--~~~~~~~~~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~ 135 (174)
...+ .. ..+.+|||||+.+.... ...+ .+...+..++..+|++++|+|+++ .....+..+++.+...
T Consensus 144 ~~~~~-~~~ll~~l~lIDTPG~~~~~~~--~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~--- 217 (550)
T 2qpt_A 144 MCAQL-PNQVLESISIIDTPGILSGAKQ--RVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGH--- 217 (550)
T ss_dssp EEEEC-CCHHHHHCEEEECCCBCC---------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTC---
T ss_pred eEEec-cccccCCEEEEECcCCCCcchh--HHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhc---
Confidence 0000 00 35889999999863211 0110 022333344556799999999985 3566667776655432
Q ss_pred hhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624 136 KIFDYMIVVFTGGDELEDNDETLEDYL 162 (174)
Q Consensus 136 ~~~~~~~iv~tk~D~~~~~~~~~~~~~ 162 (174)
. .++++|+||+|+... ..+.+.+
T Consensus 218 ~--~pvilVlNK~Dl~~~--~el~~~~ 240 (550)
T 2qpt_A 218 E--DKIRVVLNKADMVET--QQLMRVY 240 (550)
T ss_dssp G--GGEEEEEECGGGSCH--HHHHHHH
T ss_pred C--CCEEEEEECCCccCH--HHHHHHH
Confidence 1 589999999999865 3444433
No 132
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.64 E-value=1.8e-16 Score=109.48 Aligned_cols=117 Identities=20% Similarity=0.110 Sum_probs=71.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE-EEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ-RTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+..+|+++|++|+|||||++++++....... ..|...... .... .....+.++||||..+.. .
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~----~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~-----------~ 71 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSNTFPTDY----VPTVFDNFSANVVVNGATVNLGLWDTAGQEDYN-----------R 71 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHSCCC--------------CBCCCC-------CEEECCCC-CTTT-----------T
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCCCC----CCeeeeeEEEEEEECCEEEEEEEEECCCChhhh-----------h
Confidence 3489999999999999999999976532111 111111110 0111 023346699999987632 3
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|.+++.+... ..++..+..... ..|+++|+||+|+...
T Consensus 72 ~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 72 LRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAP---GVPIVLVGTKLDLRDD 127 (182)
T ss_dssp TGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC
T ss_pred hHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEechhhhcC
Confidence 33456778899999999985433333 245666655432 3699999999998765
No 133
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.64 E-value=1.1e-14 Score=111.22 Aligned_cols=127 Identities=19% Similarity=0.113 Sum_probs=82.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
...+++++|++|+|||||+|.|++.... .+ .....|.......... ....+.++||||+.+.......... ....
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~~-~~-~~~~~t~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~--~~~~ 240 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKPE-IA-SYPFTTRGINVGQFED-GYFRYQIIDTPGLLDRPISERNEIE--KQAI 240 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCCE-EE-CCTTCSSCEEEEEEEE-TTEEEEEEECTTTSSSCSTTSCHHH--HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCc-cC-CCCCeeeceeEEEEEe-cCceEEEEeCCCccccchhhhhHHH--HHHH
Confidence 3479999999999999999999997732 22 1223344444444434 5677899999999764322111111 1122
Q ss_pred HhccCCceEEEEEEeCCCCC--CHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRF--SQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~--~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......+|++++|+|+++.. +... ..++..+....+ ..|+++|+||+|+...
T Consensus 241 ~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~---~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 241 LALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK---DLPFLVVINKIDVADE 295 (357)
T ss_dssp HGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT---TSCEEEEECCTTTCCH
T ss_pred HHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC---CCCEEEEEECcccCCh
Confidence 23445689999999987443 4444 566666665443 2699999999999764
No 134
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.64 E-value=7.7e-16 Score=107.41 Aligned_cols=121 Identities=10% Similarity=0.110 Sum_probs=70.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
...+|+++|++|+|||||+|.|++....... .....+... .+ ....+.+|||||........ ...+
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~-~~~~~~~~~-----~~-~~~~~~l~Dt~G~~~~~~~~-------~~~~ 112 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDSVRPTV-VSQEPLSAA-----DY-DGSGVTLVDFPGHVKLRYKL-------SDYL 112 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSSCC------------------CC-CCTTCSEEEETTCCBSSCCH-------HHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCccc-ccCCCceee-----ee-cCCeEEEEECCCCchHHHHH-------HHHH
Confidence 4479999999999999999999987632211 111111111 11 45678899999998743221 1222
Q ss_pred HhccCCceEEEEEEeCC-CCCCHHH-HHHHHHHHHHHhh--hhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVR-SRFSQEE-EAALHSLQTLFGK--KIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~-~~~~~~~-~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~~ 153 (174)
......+|++++|+|.+ +.-+... ..++..+...... ....|+++|+||+|+...
T Consensus 113 ~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 171 (193)
T 2ged_A 113 KTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 171 (193)
T ss_dssp HHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred HhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCC
Confidence 22334579999999997 2211111 2333333322111 113689999999999865
No 135
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.63 E-value=1.3e-15 Score=108.28 Aligned_cols=122 Identities=10% Similarity=0.186 Sum_probs=74.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
....+|+++|++|+|||||+++|++...... ......+.... + ....+.++||||+.... ..+...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~-~~~~~~~~~~~-----~-~~~~~~l~Dt~G~~~~~-------~~~~~~ 75 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPT-VVSQEPLSAAD-----Y-DGSGVTLVDFPGHVKLR-------YKLSDY 75 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSSCCCB-CCCSSCEEETT-----G-GGSSCEEEECCCCGGGT-------HHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCe-eeecCceEEEE-----e-eCceEEEEECCCcHHHH-------HHHHHH
Confidence 3458999999999999999999998763211 11112222111 1 44578899999997631 112223
Q ss_pred HHhccCCceEEEEEEeCC-C--CCCHHHHHHHHHHHHHHhh--hhcCcEEEEEeCcCCCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVR-S--RFSQEEEAALHSLQTLFGK--KIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~-~--~~~~~~~~~l~~l~~~~~~--~~~~~~~iv~tk~D~~~~~ 154 (174)
+......+|++++|+|.+ + .+... ..++..+...... ....|+++|+||+|+....
T Consensus 76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 136 (218)
T 1nrj_B 76 LKTRAKFVKGLIFMVDSTVDPKKLTTT-AEFLVDILSITESSCENGIDILIACNKSELFTAR 136 (218)
T ss_dssp HHHHGGGEEEEEEEEETTSCTTCCHHH-HHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred HHhccccCCEEEEEEECCCChHHHHHH-HHHHHHHHhcccccccCCCCEEEEEEchHhcccC
Confidence 333234479999999998 3 33222 3343333332211 1236899999999998764
No 136
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.63 E-value=4.8e-15 Score=110.24 Aligned_cols=139 Identities=14% Similarity=0.145 Sum_probs=79.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccc--CCCCcc-----------------------e-e--------------
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA--SSSGVT-----------------------S-T-------------- 58 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~--~~~~~t-----------------------~-~-------------- 58 (174)
...+|+++|.+|+|||||+|+|++......+. ....++ + .
T Consensus 25 ~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~i~ 104 (299)
T 2aka_B 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT 104 (299)
T ss_dssp CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHHhc
Confidence 34799999999999999999999987432211 000011 0 0
Q ss_pred ---------eEEEEEEEeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhccCCceEEE-EEEeCCCCCCHHHH-HH
Q 030624 59 ---------CEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMAKDGIHAVL-VVFSVRSRFSQEEE-AA 125 (174)
Q Consensus 59 ---------~~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~il-~v~~~~~~~~~~~~-~~ 125 (174)
.............+.+|||||+..... ..+.....+...+..++..++.++ +|+|+++.+...+. .+
T Consensus 105 g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~ 184 (299)
T 2aka_B 105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKI 184 (299)
T ss_dssp SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHH
T ss_pred ccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHH
Confidence 000011111236799999999986321 112222334444444555666555 78899766655543 33
Q ss_pred HHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624 126 LHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 163 (174)
Q Consensus 126 l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 163 (174)
++.+.. . ..|+++|+||+|+.... ....++++
T Consensus 185 ~~~~~~---~--~~~~i~V~NK~Dl~~~~-~~~~~~~~ 216 (299)
T 2aka_B 185 AKEVDP---Q--GQRTIGVITKLDLMDEG-TDARDVLE 216 (299)
T ss_dssp HHHHCT---T--CSSEEEEEECGGGSCTT-CCCHHHHT
T ss_pred HHHhCC---C--CCeEEEEEEccccCCCC-chHHHHHh
Confidence 333321 1 26999999999998653 22344444
No 137
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.63 E-value=5.8e-15 Score=115.47 Aligned_cols=119 Identities=13% Similarity=0.156 Sum_probs=80.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc--ccc------------cc-----------------CCCCcceeeEEEEEEEe
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRA--FKS------------RA-----------------SSSGVTSTCEMQRTVLK 67 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~--~~~------------~~-----------------~~~~~t~~~~~~~~~~~ 67 (174)
...+++++|+.++|||||+|+|++... +.. +. ...+.|.........+
T Consensus 23 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~- 101 (434)
T 1zun_B 23 EMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST- 101 (434)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC-
T ss_pred CceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec-
Confidence 347999999999999999999986431 000 00 0012343333334444
Q ss_pred CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 68 DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 68 ~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
....+.+|||||+.+ +...+...+..+|++++|+|++++....+.+++..+... + .+++++|+||
T Consensus 102 ~~~~~~iiDtpGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~~~~~-~---~~~iIvviNK 166 (434)
T 1zun_B 102 AKRKFIIADTPGHEQ-----------YTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLL-G---IKHIVVAINK 166 (434)
T ss_dssp SSEEEEEEECCCSGG-----------GHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHT-T---CCEEEEEEEC
T ss_pred CCceEEEEECCChHH-----------HHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHc-C---CCeEEEEEEc
Confidence 567899999999875 222233345778999999999878877777777655443 2 1468999999
Q ss_pred cCCCCC
Q 030624 148 GDELED 153 (174)
Q Consensus 148 ~D~~~~ 153 (174)
+|+...
T Consensus 167 ~Dl~~~ 172 (434)
T 1zun_B 167 MDLNGF 172 (434)
T ss_dssp TTTTTS
T ss_pred CcCCcc
Confidence 999864
No 138
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.63 E-value=1.8e-15 Score=117.10 Aligned_cols=116 Identities=16% Similarity=0.161 Sum_probs=81.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccc--------------ccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKS--------------RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~--------------~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
..+|+++|+.++|||||+++|++...... .....+.|.......+.. .+..+.++||||+.+
T Consensus 3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~-~~~~~~iiDtpG~~~--- 78 (397)
T 1d2e_A 3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYST-AARHYAHTDCPGHAD--- 78 (397)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEEC-SSCEEEEEECSSHHH---
T ss_pred eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEecc-CCeEEEEEECCChHH---
Confidence 47899999999999999999987421000 001223444443333333 567899999999864
Q ss_pred ChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCC
Q 030624 86 GSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELE 152 (174)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~ 152 (174)
+...+...+..+|++++|+|++++....+.+.+..+... . .| +++++||+|+..
T Consensus 79 --------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~---~--vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 79 --------YVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQI---G--VEHVVVYVNKADAVQ 133 (397)
T ss_dssp --------HHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCCEEEEEECGGGCS
T ss_pred --------HHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHc---C--CCeEEEEEECcccCC
Confidence 444445567889999999999878878877777555442 1 35 789999999975
No 139
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.63 E-value=2.9e-15 Score=104.31 Aligned_cols=117 Identities=25% Similarity=0.176 Sum_probs=72.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
+..+|+++|.+|+|||||++.+++.... .. ...|..... ..... +. ..+.++||||.......
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~~~~-~~---~~~t~~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~~~~--------- 85 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTKRFI-SE---YDPNLEDTYSSEETV-DHQPVHLRVMDTADLDTPRNC--------- 85 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHSSCC-SC---CCTTCCEEEEEEEEE-TTEEEEEEEEECCC---CCCT---------
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhCCCC-cc---cCCCccceeeEEEEE-CCEEEEEEEEECCCCCcchhH---------
Confidence 3489999999999999999999986632 21 112222111 12222 32 35789999998764321
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhh-hhcCcEEEEEeCcCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGK-KIFDYMIVVFTGGDELE 152 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~-~~~~~~~iv~tk~D~~~ 152 (174)
..++..+|++++|+|.+++-+... ..++..+...... ....|+++|+||+|+..
T Consensus 86 ---~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 141 (187)
T 3c5c_A 86 ---ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQ 141 (187)
T ss_dssp ---HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGG
T ss_pred ---HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhh
Confidence 123456799999999985433332 3455555554321 12368999999999864
No 140
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.63 E-value=3.5e-15 Score=120.92 Aligned_cols=119 Identities=16% Similarity=0.224 Sum_probs=83.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccc--------------c---------------CCCCcceeeEEEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------A---------------SSSGVTSTCEMQRTVLKDG 69 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~--------------~---------------~~~~~t~~~~~~~~~~~~~ 69 (174)
+..+|+++|++|+|||||+|.|++....... . ...+.|.......+.+ .+
T Consensus 166 ~~lkV~ivG~~n~GKSTLin~Ll~~~~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~-~~ 244 (611)
T 3izq_1 166 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFST-HR 244 (611)
T ss_dssp CCCEEEEECCSSSCHHHHHHHHHSCSSCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEEC-SS
T ss_pred CceEEEEEECCCCCHHHHHHHHHHhcCCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEec-CC
Confidence 3579999999999999999999876321000 0 0124455555555555 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHHhhhhcCcEE
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI 142 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~~ 142 (174)
..+.+|||||+.+ +...+...+..+|++|+|+|++++ ....+.+.+..+... + .++++
T Consensus 245 ~~~~iiDTPG~e~-----------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~l-g---i~~iI 309 (611)
T 3izq_1 245 ANFTIVDAPGHRD-----------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSL-G---IHNLI 309 (611)
T ss_dssp CEEEEEECCSSSC-----------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTT-T---CCEEE
T ss_pred ceEEEEECCCCcc-----------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHc-C---CCeEE
Confidence 8899999999976 566666778899999999999843 334555555444432 2 14699
Q ss_pred EEEeCcCCCCC
Q 030624 143 VVFTGGDELED 153 (174)
Q Consensus 143 iv~tk~D~~~~ 153 (174)
+|+||+|+...
T Consensus 310 VVvNKiDl~~~ 320 (611)
T 3izq_1 310 IAMNKMDNVDW 320 (611)
T ss_dssp EEEECTTTTTT
T ss_pred EEEecccccch
Confidence 99999999863
No 141
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.63 E-value=4.1e-15 Score=118.10 Aligned_cols=117 Identities=15% Similarity=0.113 Sum_probs=81.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+..+|+++|.+|+|||||+|.|++.... . ...|.......+.+ ++..+.++||||..+ +...+
T Consensus 321 ~~~ki~lvG~~nvGKSsLl~~l~~~~~~-~----~~~T~~~~~~~~~~-~~~~~~l~Dt~G~~~-----------~~~~~ 383 (497)
T 3lvq_E 321 KEMRILMLGLDAAGKTTILYKLKLGQSV-T----TIPTVGFNVETVTY-KNVKFNVWDVGGQDK-----------IRPLW 383 (497)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHSSCC-C----CCCCSSEEEEEEES-SSCEEEEEEECCCGG-----------GSGGG
T ss_pred cceeEEEEcCCCCCHHHHHHHHhcCCCC-C----cCCccceeEEEEEe-CCEEEEEEECCCcHH-----------HHHHH
Confidence 3478999999999999999999987632 1 22355555555655 678899999999765 23334
Q ss_pred HhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..++..+|++|+|+|.+++-.... ..++..+.+... ....|+++|+||+|+...
T Consensus 384 ~~~~~~ad~~i~V~D~~~~~s~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~~~ 438 (497)
T 3lvq_E 384 RHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDRE-MRDAIILIFANKQDLPDA 438 (497)
T ss_dssp GGGGTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGG-GTTCEEEEEEECCSSSSC
T ss_pred HHHhccCCEEEEEEECcchhHHHHHHHHHHHHhhhhh-cCCCcEEEEEECCCCCcC
Confidence 567788999999999985433333 233333322111 123699999999999764
No 142
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.63 E-value=1.5e-15 Score=104.50 Aligned_cols=112 Identities=20% Similarity=0.134 Sum_probs=71.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
+..+|+++|.+|+|||||++.+++..... .....+ .. ....... ++ ..+.+|||||... .
T Consensus 6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~-~~--~~~~~~~-~~~~~~l~i~Dt~G~~~------------~- 67 (178)
T 2iwr_A 6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTES-EQ--YKKEMLV-DGQTHLVLIREEAGAPD------------A- 67 (178)
T ss_dssp CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSS-SE--EEEEEEE-TTEEEEEEEEECSSSCC------------H-
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcc-ee--EEEEEEE-CCEEEEEEEEECCCCch------------h-
Confidence 45899999999999999999999866432 111111 11 1222333 33 3578999999875 1
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhh-hcCcEEEEEeCcCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKK-IFDYMIVVFTGGDEL 151 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~-~~~~~~iv~tk~D~~ 151 (174)
.++..+|++++|+|.+++.+... ..+++.+....... ...|+++|.||+|+.
T Consensus 68 ---~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 68 ---KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp ---HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred ---HHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 12334699999999985443333 34444555543211 236899999999984
No 143
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.63 E-value=2.4e-15 Score=119.98 Aligned_cols=119 Identities=16% Similarity=0.205 Sum_probs=79.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc--cc------------------cCCCCcceeeEEEEEEEeCCcEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFK--SR------------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTP 78 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~--~~------------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtp 78 (174)
+.++|+++|++|+|||||+++|+...... .+ ....+.|.......+.+ ++..+.+||||
T Consensus 12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~-~~~~i~liDTP 90 (529)
T 2h5e_A 12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPY-HDCLVNLLDTP 90 (529)
T ss_dssp TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEE-TTEEEEEECCC
T ss_pred CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEE-CCeEEEEEECC
Confidence 34899999999999999999998632110 00 00122333333444555 67889999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 79 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
|+.++. ......+..+|++++|+|++++.......++..+... . .|+++++||+|+...+
T Consensus 91 G~~df~-----------~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~~~~~~~---~--ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 91 GHEDFS-----------EDTYRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTRLR---D--TPILTFMNKLDRDIRD 150 (529)
T ss_dssp CSTTCC-----------HHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHHTTT---T--CCEEEEEECTTSCCSC
T ss_pred CChhHH-----------HHHHHHHHHCCEEEEEEeCCccchHHHHHHHHHHHHc---C--CCEEEEEcCcCCcccc
Confidence 998742 1222345677999999999877777666665444322 2 5899999999998764
No 144
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.62 E-value=3.3e-15 Score=110.03 Aligned_cols=119 Identities=17% Similarity=0.165 Sum_probs=73.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
..+|+++|++|+|||||+|+|++...+ .+ ..++.|.......+.+ +..+.++||||..+..... ....+.+...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~~~~-v~-~~pg~tv~~~~~~~~~--~~~l~l~DtpG~~~~~~~~--~~e~v~~~~~ 76 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGHNQR-VG-NWPGVTVERKSGLVKK--NKDLEIQDLPGIYSMSPYS--PEAKVARDYL 76 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCCCCC-CC-SSSCCCCSCEEEECTT--CTTEEEEECCCCSCSSCSS--HHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHCCCCc-cc-CCCCCcEEEEEEEEec--CCeEEEEECCCcCccCCCC--hHHHHHHHHH
Confidence 378999999999999999999997633 22 2233444333222211 5678999999998753221 1111222111
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
....+|++++|+|+++ .. ....+...+.+ ...|+++++||+|+..
T Consensus 77 -~~~~~d~vi~V~D~t~-~e-~~~~~~~~l~~-----~~~p~ilv~NK~Dl~~ 121 (272)
T 3b1v_A 77 -LSQRADSILNVVDATN-LE-RNLYLTTQLIE-----TGIPVTIALNMIDVLD 121 (272)
T ss_dssp -HTTCCSEEEEEEEGGG-HH-HHHHHHHHHHH-----TCSCEEEEEECHHHHH
T ss_pred -hcCCCCEEEEEecCCc-hH-hHHHHHHHHHh-----cCCCEEEEEEChhhCC
Confidence 1247899999999983 21 12233333332 1269999999999854
No 145
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.62 E-value=1.2e-15 Score=118.27 Aligned_cols=117 Identities=15% Similarity=0.159 Sum_probs=81.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc-------cccc--------cCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRA-------FKSR--------ASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~-------~~~~--------~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
...+|+++|+.++|||||+++|++... +... ....+.|.......+.+ ....+.++||||+.+
T Consensus 10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~-~~~~~~iiDtpG~~~- 87 (405)
T 2c78_A 10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYET-AKRHYSHVDCPGHAD- 87 (405)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEEC-SSCEEEEEECCCSGG-
T ss_pred CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEecc-CCeEEEEEECCChHH-
Confidence 458999999999999999999987310 0000 00123344433333444 567899999999886
Q ss_pred CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCC
Q 030624 84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELE 152 (174)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~ 152 (174)
+.......+..+|++++|+|++++....+.+++..+... . .| +++++||+|+..
T Consensus 88 ----------f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~~~~~---~--ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 88 ----------YIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQV---G--VPYIVVFMNKVDMVD 142 (405)
T ss_dssp ----------GHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHT---T--CCCEEEEEECGGGCC
T ss_pred ----------HHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHc---C--CCEEEEEEECccccC
Confidence 233333456678999999999878777777777665543 1 35 889999999985
No 146
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.62 E-value=1.3e-15 Score=120.23 Aligned_cols=120 Identities=22% Similarity=0.296 Sum_probs=80.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCC-CCCCChHHH-HHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF-DFSAGSEFV-GKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~-~~~~~~~~~-~~~~~~~~ 98 (174)
.+|+++|.+|+|||||+|+|++....... ...+.|.......+.+ ++..+.++||||+. ++....+.. ......
T Consensus 244 ~kV~ivG~pnvGKSSLln~L~~~~~a~vs-~~~gTT~d~~~~~i~~-~g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~-- 319 (482)
T 1xzp_A 244 LRMVIVGKPNVGKSTLLNRLLNEDRAIVT-DIPGTTRDVISEEIVI-RGILFRIVDTAGVRSETNDLVERLGIERTLQ-- 319 (482)
T ss_dssp EEEEEECCHHHHTCHHHHHHHHHTBCCCC-CSSCCSSCSCCEEEEE-TTEEEEEEESSCCCSSCCTTCCCCCHHHHHH--
T ss_pred CEEEEECcCCCcHHHHHHHHHCCCCCccC-CCCCeeeeeEEEEEec-CCeEEEEEECCCccccchhhHHHHHHHHHHH--
Confidence 68999999999999999999987532121 2234454444445555 67889999999998 543221111 111222
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|++++.+..+.++++.+ . . .|+++|+||+|+...
T Consensus 320 --~~~~aD~vl~VvD~s~~~s~~~~~il~~l----~-~--~piivV~NK~DL~~~ 365 (482)
T 1xzp_A 320 --EIEKADIVLFVLDASSPLDEEDRKILERI----K-N--KRYLVVINKVDVVEK 365 (482)
T ss_dssp --HHHHCSEEEEEEETTSCCCHHHHHHHHHH----T-T--SSEEEEEEECSSCCC
T ss_pred --HhhcccEEEEEecCCCCCCHHHHHHHHHh----c-C--CCEEEEEECcccccc
Confidence 23456999999999877776665554332 1 2 689999999999754
No 147
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.62 E-value=8e-16 Score=108.97 Aligned_cols=117 Identities=20% Similarity=0.135 Sum_probs=75.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
...+|+++|.+|+|||||++.+++.............. ....... ++ ..+.+|||||..... .
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~---~~~~~~~-~~~~~~~~i~Dt~G~~~~~-----------~ 72 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDN---FSANVAV-DGQIVNLGLWDTAGQEDYS-----------R 72 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCC---EEEEEEC-SSCEEEEEEECCCCCCCCC-----------C
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCcccee---EEEEEEE-CCEEEEEEEEECCCcHHHH-----------H
Confidence 34899999999999999999999765321111111111 1112223 33 378999999997633 1
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|.+++-+... ..++..+..... ..|+++|+||+|+...
T Consensus 73 ~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~---~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 73 LRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAP---NVPIVLVGTKLDLRDD 128 (212)
T ss_dssp --CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TCCEEEEEECHHHHTC
T ss_pred HHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCC---CCCEEEEEeCHHhhhC
Confidence 22346778899999999985433333 246666655422 2699999999998764
No 148
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.62 E-value=8.6e-15 Score=117.30 Aligned_cols=120 Identities=18% Similarity=0.263 Sum_probs=88.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc--------------------cccccCCCCcceeeEEEEEEEeCCcEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRA--------------------FKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTP 78 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~--------------------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtp 78 (174)
+.++|+|+|+.++|||||..+|+-... ....+...++|.......+.| ++..+.+||||
T Consensus 30 r~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTP 108 (548)
T 3vqt_A 30 RRRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPY-RDRVVNLLDTP 108 (548)
T ss_dssp TEEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEE-TTEEEEEECCC
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEE-CCEEEEEEeCC
Confidence 458899999999999999999862110 001122335677777777888 88999999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh
Q 030624 79 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 155 (174)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~ 155 (174)
|+.++. .++.+.++.+ |.+|+|+|+.++....++..++...+.. .|.++++||+|....+.
T Consensus 109 GHvDF~-------~Ev~raL~~~----DgAvlVvda~~GV~~qT~~v~~~a~~~~-----lp~i~fINK~Dr~~ad~ 169 (548)
T 3vqt_A 109 GHQDFS-------EDTYRVLTAV----DSALVVIDAAKGVEAQTRKLMDVCRMRA-----TPVMTFVNKMDREALHP 169 (548)
T ss_dssp CGGGCS-------HHHHHHHHSC----SEEEEEEETTTBSCHHHHHHHHHHHHTT-----CCEEEEEECTTSCCCCH
T ss_pred CcHHHH-------HHHHHHHHhc----CceEEEeecCCCcccccHHHHHHHHHhC-----CceEEEEecccchhcch
Confidence 999964 4455665555 9999999999899999988877666653 68999999999987653
No 149
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.61 E-value=1.7e-14 Score=101.93 Aligned_cols=129 Identities=16% Similarity=0.244 Sum_probs=73.3
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh---HH
Q 030624 13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS---EF 89 (174)
Q Consensus 13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~---~~ 89 (174)
++.+.+ .+++++|++|||||||+|.|++...........+.+.... ...+ .+ .+.++||||+....... +.
T Consensus 21 ~~~~~~--~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~--~~~~-~~-~~~l~Dt~G~~~~~~~~~~~~~ 94 (210)
T 1pui_A 21 LPSDTG--IEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN--LFEV-AD-GKRLVDLPGYGYAEVPEEMKRK 94 (210)
T ss_dssp SSCSCS--EEEEEEECTTSSHHHHHTTTCCC-------------CCEE--EEEE-ET-TEEEEECCCCC------CCHHH
T ss_pred CCCCCC--cEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeE--EEEe-cC-CEEEEECcCCcccccCHHHHHH
Confidence 566665 9999999999999999999998762111111122222221 1222 22 57799999986522111 11
Q ss_pred HHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 90 VGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+...+.... .....++.+++++|.+.+....+.+..+.+... ..|++++.||+|+...
T Consensus 95 ~~~~~~~~~-~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~-----~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 95 WQRALGEYL-EKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDS-----NIAVLVLLTKADKLAS 152 (210)
T ss_dssp HHHHHHHHH-HHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHT-----TCCEEEEEECGGGSCH
T ss_pred HHHHHHHHH-HhhhcccEEEEEEECCCCCchhHHHHHHHHHHc-----CCCeEEEEecccCCCc
Confidence 111111222 223567999999999866665554444444322 2578899999998764
No 150
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.61 E-value=2.9e-15 Score=123.06 Aligned_cols=121 Identities=25% Similarity=0.341 Sum_probs=81.2
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCccc--ccc-c-------------CCCCcceeeEEEEEEEeCCcEEEEEeCCCC
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRRAF--KSR-A-------------SSSGVTSTCEMQRTVLKDGQVVNVIDTPGL 80 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~--~~~-~-------------~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~ 80 (174)
....++|+++|++|+|||||+|+|++.... ..+ . ...+.|.........+ ++..+.+|||||+
T Consensus 7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~-~~~~i~liDTPG~ 85 (693)
T 2xex_A 7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAW-EGHRVNIIDTPGH 85 (693)
T ss_dssp STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEE-TTEEEEEECCCCC
T ss_pred cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEE-CCeeEEEEECcCC
Confidence 344589999999999999999999842100 000 0 0123344444445556 6788999999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
.++. .+..+.+. .+|++++|+|++++....+...+..+... . .|+++++||+|+...+
T Consensus 86 ~df~-------~~~~~~l~----~aD~~llVvDa~~g~~~~~~~~~~~~~~~---~--~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 86 VDFT-------VEVERSLR----VLDGAVTVLDAQSGVEPQTETVWRQATTY---G--VPRIVFVNKMDKLGAN 143 (693)
T ss_dssp SSCC-------HHHHHHHH----HCSEEEEEEETTTBSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTCC
T ss_pred cchH-------HHHHHHHH----HCCEEEEEECCCCCCcHHHHHHHHHHHHc---C--CCEEEEEECCCccccc
Confidence 8742 22333333 35999999999878888887776655543 2 6899999999998764
No 151
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.61 E-value=2.1e-14 Score=111.45 Aligned_cols=121 Identities=17% Similarity=0.289 Sum_probs=79.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEEe--------------C--------CcEEEEE
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLK--------------D--------GQVVNVI 75 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~--------------~--------~~~~~~i 75 (174)
+..+|+++|+.++|||||+++|++..... ......+.|....+...... . ...+.+|
T Consensus 7 ~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 86 (408)
T 1s0u_A 7 AEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFV 86 (408)
T ss_dssp CCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEE
T ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEE
Confidence 34899999999999999999999754211 11112233443332222110 0 1578999
Q ss_pred eCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 76 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 76 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
||||+.+ +.......+..+|++++|+|++++. ...+.+.+..+... +. +|+++++||+|+...+
T Consensus 87 DtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l-~~---~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 87 DSPGHET-----------LMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEIL-GI---DKIIIVQNKIDLVDEK 151 (408)
T ss_dssp ECSSHHH-----------HHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHT-TC---CCEEEEEECTTSSCTT
T ss_pred ECCCHHH-----------HHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHc-CC---CeEEEEEEccCCCCHH
Confidence 9999653 4444445667889999999998776 67777777655432 21 4799999999998653
No 152
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.61 E-value=3.3e-15 Score=115.81 Aligned_cols=120 Identities=16% Similarity=0.193 Sum_probs=77.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccccc-ccC------------CCCcceee-----EEEEEEEeCCcEEEEEeCCC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKS-RAS------------SSGVTSTC-----EMQRTVLKDGQVVNVIDTPG 79 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~-~~~------------~~~~t~~~-----~~~~~~~~~~~~~~~iDtpG 79 (174)
.+..+|+++|++|+|||||+|+|++...... +.. ....+... ....... ....+.++||||
T Consensus 6 ~~~~~I~vvG~~~~GKSTLi~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iiDtPG 84 (403)
T 3sjy_A 6 QPEVNIGVVGHVDHGKTTLVQAITGIWTSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPK-FLRRISFIDAPG 84 (403)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHSCCCCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCE-EEEEEEEEECCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCcccccccCccccceeeccccccccceeccccccccccccccc-ccceEEEEECCC
Confidence 3458999999999999999999998532110 000 00000000 0000000 125789999999
Q ss_pred CCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 80 LFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+.+ +.......+..+|++++|+|++++. .....+++..+... +. +|+++++||+|+...
T Consensus 85 h~~-----------~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~-~~---~~iivviNK~Dl~~~ 144 (403)
T 3sjy_A 85 HEV-----------LMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGII-GV---KNLIIVQNKVDVVSK 144 (403)
T ss_dssp CGG-----------GHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH
T ss_pred cHH-----------HHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHc-CC---CCEEEEEECccccch
Confidence 765 3334444556789999999998776 66677777666554 22 489999999999865
No 153
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.61 E-value=8.8e-15 Score=101.54 Aligned_cols=134 Identities=17% Similarity=0.169 Sum_probs=74.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHH----
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK---- 96 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~---- 96 (174)
.+|+++|++|+|||||+|++++.... .. ...+.+... ....+ . .+.++||||+.............+..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~~~~-~~-~~~~~t~~~--~~~~~-~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~ 74 (190)
T 2cxx_A 2 ATIIFAGRSNVGKSTLIYRLTGKKVR-RG-KRPGVTRKI--IEIEW-K--NHKIIDMPGFGFMMGLPKEVQERIKDEIVH 74 (190)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHSCCCS-SS-SSTTCTTSC--EEEEE-T--TEEEEECCCBSCCTTSCHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhCcCCc-cC-CCCCcccee--EEEec-C--CEEEEECCCccccccCCHHHHHHHHHHHHH
Confidence 57999999999999999999987632 22 122333322 22223 2 68899999976533222211222222
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHHHHHHHH--------HHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEEEAALHS--------LQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 163 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~--------l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 163 (174)
.+......++++++++|.. .+......+... +...... ...|+++|+||+|+........+++.+
T Consensus 75 ~~~~~~~~~~~v~~v~d~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~piilv~nK~Dl~~~~~~~~~~~~~ 147 (190)
T 2cxx_A 75 FIEDNAKNIDVAVLVVDGK-AAPEIIKRWEKRGEIPIDVEFYQFLRE-LDIPTIVAVNKLDKIKNVQEVINFLAE 147 (190)
T ss_dssp HHHHHGGGCCEEEEEEETT-HHHHHHHHHHHTTCCCHHHHHHHHHHH-TTCCEEEEEECGGGCSCHHHHHHHHHH
T ss_pred HHHhhhccCCEEEEEEcch-hhhhHHHhhhccCccHHHHHHHHHHHh-cCCceEEEeehHhccCcHHHHHHHHHH
Confidence 2222245567888888876 332221222211 1111111 126999999999998753223444433
No 154
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.61 E-value=1.1e-14 Score=111.44 Aligned_cols=125 Identities=15% Similarity=0.170 Sum_probs=75.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
++++++|++|+|||||+|.|++...... .....|.......+.+ .+..+.++||||+.... .......+...+.
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~--~~~~~T~d~~~~~i~~-~g~~v~l~DT~G~i~~l--p~~lve~f~~tl~- 253 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVD--TKLFTTMSPKRYAIPI-NNRKIMLVDTVGFIRGI--PPQIVDAFFVTLS- 253 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEE-TTEEEEEEECCCBCSSC--CGGGHHHHHHHHH-
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCcccc--CCcccccCCEEEEEEE-CCEEEEEEeCCCchhcC--CHHHHHHHHHHHH-
Confidence 3599999999999999999999764221 2233444333444555 56788999999986521 1223333333333
Q ss_pred ccCCceEEEEEEeCCCCCC--HHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFS--QEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~--~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+..+|++++|+|++++.+ ... ..+.+.+... +.. ..|+++|.||+|+...
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l-~~~-~~p~ilV~NK~Dl~~~ 307 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREI-GVS-GKPILVTLNKIDKING 307 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHH-TCC-SCCEEEEEECGGGCCS
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHh-CcC-CCCEEEEEECCCCCCc
Confidence 4677899999999974421 111 2233334433 211 2589999999999865
No 155
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.61 E-value=4.2e-15 Score=116.28 Aligned_cols=118 Identities=23% Similarity=0.309 Sum_probs=76.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc-ccc-c---------------------------ccCCCCcceeeEEEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRR-AFK-S---------------------------RASSSGVTSTCEMQRTVLKDG 69 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~-~~~-~---------------------------~~~~~~~t~~~~~~~~~~~~~ 69 (174)
+..+++++|+.++|||||+++|++.. .+. . .....+.|.......+.+ .+
T Consensus 5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~-~~ 83 (435)
T 1jny_A 5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFET-KK 83 (435)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEEC-SS
T ss_pred CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEec-CC
Confidence 34899999999999999999998641 010 0 001233455555455555 67
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-------CCHHHHHHHHHHHHHHhhhhcCcEE
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-------FSQEEEAALHSLQTLFGKKIFDYMI 142 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-------~~~~~~~~l~~l~~~~~~~~~~~~~ 142 (174)
..+.+|||||+.+ +...+...+..+|++++|+|+++. ......+.+..+... + .++++
T Consensus 84 ~~~~iiDtpG~~~-----------f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~-~---~~~ii 148 (435)
T 1jny_A 84 YFFTIIDAPGHRD-----------FVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM-G---LDQLI 148 (435)
T ss_dssp CEEEECCCSSSTT-----------HHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT-T---CTTCE
T ss_pred eEEEEEECCCcHH-----------HHHHHHhhhhhcCEEEEEEECCCCccccccccchHHHHHHHHHHHc-C---CCeEE
Confidence 7899999999987 444455677899999999999864 333444444433332 1 13689
Q ss_pred EEEeCcCCCC
Q 030624 143 VVFTGGDELE 152 (174)
Q Consensus 143 iv~tk~D~~~ 152 (174)
+++||+|+..
T Consensus 149 vviNK~Dl~~ 158 (435)
T 1jny_A 149 VAVNKMDLTE 158 (435)
T ss_dssp EEEECGGGSS
T ss_pred EEEEcccCCC
Confidence 9999999986
No 156
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.61 E-value=7.9e-15 Score=120.43 Aligned_cols=127 Identities=20% Similarity=0.236 Sum_probs=82.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCccc--ccc--------------cCCCCcceeeEEEEEEEeCCcEEEEEeCC
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAF--KSR--------------ASSSGVTSTCEMQRTVLKDGQVVNVIDTP 78 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~--~~~--------------~~~~~~t~~~~~~~~~~~~~~~~~~iDtp 78 (174)
.+..+.++|+++|+.|+|||||+++|+..... ..+ ....+.|.........+ ++..+.+||||
T Consensus 7 ~~~~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~-~~~~i~liDTP 85 (691)
T 1dar_A 7 YDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFW-KDHRINIIDTP 85 (691)
T ss_dssp CCGGGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEE-TTEEEEEECCC
T ss_pred CccccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEE-CCeEEEEEECc
Confidence 33445689999999999999999999832100 000 00123444455555556 67889999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCChhhH
Q 030624 79 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETL 158 (174)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~ 158 (174)
|+.++ ..+..+. +..+|++++|+|++++....+...+..+... . .|+++++||+|+...+....
T Consensus 86 G~~df-------~~~~~~~----l~~aD~~ilVvDa~~g~~~~t~~~~~~~~~~---~--~p~ivviNKiD~~~~~~~~~ 149 (691)
T 1dar_A 86 GHVDF-------TIEVERS----MRVLDGAIVVFDSSQGVEPQSETVWRQAEKY---K--VPRIAFANKMDKTGADLWLV 149 (691)
T ss_dssp SSTTC-------HHHHHHH----HHHCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECTTSTTCCHHHH
T ss_pred Cccch-------HHHHHHH----HHHCCEEEEEEECCCCcchhhHHHHHHHHHc---C--CCEEEEEECCCcccCCHHHH
Confidence 99862 1223333 3345999999999878888777666554442 2 68999999999987643333
No 157
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.60 E-value=1e-14 Score=101.33 Aligned_cols=114 Identities=21% Similarity=0.139 Sum_probs=73.7
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC--cEEEEEeCCCCCCCCCChHHHHHH
Q 030624 16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG--QVVNVIDTPGLFDFSAGSEFVGKE 93 (174)
Q Consensus 16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~iDtpG~~~~~~~~~~~~~~ 93 (174)
+..+..+|+++|.+|+|||||+|.+++....... ..|.......+.+ ++ ..+.+|||||....
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~----~~t~~~~~~~~~~-~~~~~~l~i~Dt~G~~~~---------- 80 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEE----SPEGGRFKKEIVV-DGQSYLLLIRDEGGPPEL---------- 80 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCC----CTTCEEEEEEEEE-TTEEEEEEEEECSSSCCH----------
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCc----CCCcceEEEEEEE-CCEEEEEEEEECCCChhh----------
Confidence 4455689999999999999999999876533211 1122222233333 44 35678999998762
Q ss_pred HHHHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
. ++..+|++++|+|.+++-+... ..++..+..... ....|+++|.||+|+.
T Consensus 81 -~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~~~~piilv~nK~Dl~ 132 (184)
T 3ihw_A 81 -Q-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRN-ASEVPMVLVGTQDAIS 132 (184)
T ss_dssp -H-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSC-GGGSCEEEEEECTTCB
T ss_pred -h-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcC-CCCCCEEEEEECcccc
Confidence 1 2234699999999985443333 445555544321 1236999999999984
No 158
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.60 E-value=1.9e-15 Score=118.91 Aligned_cols=118 Identities=19% Similarity=0.226 Sum_probs=78.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc-cccc-------------cc---------------CCCCcceeeEEEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRR-AFKS-------------RA---------------SSSGVTSTCEMQRTVLKDG 69 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~-~~~~-------------~~---------------~~~~~t~~~~~~~~~~~~~ 69 (174)
+..+|+++|+.++|||||+|+|++.. .+.. |. ...+.|.......+.+ .+
T Consensus 6 ~~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~-~~ 84 (458)
T 1f60_A 6 SHINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFET-PK 84 (458)
T ss_dssp EEEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEEC-SS
T ss_pred ceeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEec-CC
Confidence 34789999999999999999998641 0000 00 0123455444445554 56
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCH-------HHHHHHHHHHHHHhhhhcCcEE
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQ-------EEEAALHSLQTLFGKKIFDYMI 142 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~-------~~~~~l~~l~~~~~~~~~~~~~ 142 (174)
..+.++||||+.+ +...+...+..+|++++|+|++++... .+.+.+..+... . .++++
T Consensus 85 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~---~-v~~ii 149 (458)
T 1f60_A 85 YQVTVIDAPGHRD-----------FIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTL---G-VRQLI 149 (458)
T ss_dssp EEEEEEECCCCTT-----------HHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHT---T-CCEEE
T ss_pred ceEEEEECCCcHH-----------HHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHc---C-CCeEE
Confidence 7899999999875 555555678899999999999854322 344444333321 1 13589
Q ss_pred EEEeCcCCCC
Q 030624 143 VVFTGGDELE 152 (174)
Q Consensus 143 iv~tk~D~~~ 152 (174)
+++||+|+..
T Consensus 150 vviNK~Dl~~ 159 (458)
T 1f60_A 150 VAVNKMDSVK 159 (458)
T ss_dssp EEEECGGGGT
T ss_pred EEEEcccccc
Confidence 9999999984
No 159
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.60 E-value=1.1e-14 Score=111.28 Aligned_cols=128 Identities=21% Similarity=0.286 Sum_probs=69.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCC-----CCcceeeEEEEEEEe-CC--cEEEEEeCCCCCCCCC------
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS-----SGVTSTCEMQRTVLK-DG--QVVNVIDTPGLFDFSA------ 85 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~-----~~~t~~~~~~~~~~~-~~--~~~~~iDtpG~~~~~~------ 85 (174)
..+|+++|++|+|||||+|+|++...+..+... ...|........... .+ ..+.++||||+.+...
T Consensus 37 ~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~ 116 (361)
T 2qag_A 37 EFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 116 (361)
T ss_dssp EECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC--------------C
T ss_pred CEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHH
Confidence 467999999999999999999887655443211 112322222222221 22 2589999999955322
Q ss_pred -ChHHHHHHHHHHHHhc---------cCCceEEEEEEeC-CCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 86 -GSEFVGKEIVKCIGMA---------KDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 86 -~~~~~~~~~~~~~~~~---------~~~~~~il~v~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+.+...+..++... ..++|+++|+++. ...+...+..+++.+. .. .|+++|+||+|+...
T Consensus 117 ~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~----~~--~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 117 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH----NK--VNIVPVIAKADTLTL 189 (361)
T ss_dssp CTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC----S---SCEEEEEECCSSSCH
T ss_pred HHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc----cC--CCEEEEEECCCCCCH
Confidence 2222233333333221 2346789999976 4477777776665542 22 589999999999865
No 160
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.60 E-value=1.9e-15 Score=104.90 Aligned_cols=117 Identities=17% Similarity=0.164 Sum_probs=67.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE------eCCcEEEEEeCCCCCCCCCChHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL------KDGQVVNVIDTPGLFDFSAGSEFVGKEI 94 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~~iDtpG~~~~~~~~~~~~~~~ 94 (174)
.+|+++|++|+|||||++.+++......+. ...|....+..... .....+.++||||... +
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~~~~~~~~~--~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~-----------~ 69 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMKTKKSDLGM--QSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREE-----------F 69 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTCC-------------CSEEEEEEEC---------CEEEEEEECSHHH-----------H
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCccCCC--cceeccEEeEEeeeccccCCCCceEEEEEecCCCHH-----------H
Confidence 689999999999999999999863211211 11222222222111 1345789999999754 1
Q ss_pred HHHHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 95 VKCIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 95 ~~~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
......++.+++++++|+|.+++....+ ..|+..+.... ...|+++|.||+|+...
T Consensus 70 ~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~---~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 70 YSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA---SSSPVILVGTHLDVSDE 127 (184)
T ss_dssp HTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC---TTCEEEEEEECGGGCCH
T ss_pred HHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC---CCCcEEEEEECCCcccc
Confidence 1112223345699999999975422211 34554444432 12689999999998654
No 161
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.60 E-value=1.3e-14 Score=112.77 Aligned_cols=120 Identities=17% Similarity=0.276 Sum_probs=80.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccc-cccCCCCcceeeEEEEEEEeC----------------------CcEEEEE
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFK-SRASSSGVTSTCEMQRTVLKD----------------------GQVVNVI 75 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~----------------------~~~~~~i 75 (174)
+..+|+++|+.++|||||+++|++..... ......+.|....+....+.. ...+.+|
T Consensus 9 ~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~ii 88 (410)
T 1kk1_A 9 AEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFI 88 (410)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEE
T ss_pred CccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEE
Confidence 34789999999999999999999753211 111123334433333222210 1578999
Q ss_pred eCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 76 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 76 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
||||+.+ +.......+..+|++++|+|++++. ...+.+.+..+... +. +++++++||+|+...
T Consensus 89 DtPGh~~-----------f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~-~~---~~iivviNK~Dl~~~ 152 (410)
T 1kk1_A 89 DAPGHEA-----------LMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQII-GQ---KNIIIAQNKIELVDK 152 (410)
T ss_dssp ECSSHHH-----------HHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHH-TC---CCEEEEEECGGGSCH
T ss_pred ECCChHH-----------HHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHc-CC---CcEEEEEECccCCCH
Confidence 9999653 3333444556779999999998776 67777777665543 21 478999999999864
No 162
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.59 E-value=3.3e-15 Score=114.52 Aligned_cols=102 Identities=15% Similarity=0.221 Sum_probs=74.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.+|+++|+.++|||||+++|+. . +.|.......+.+ .+..+.++||||+.++ ...+..
T Consensus 22 ~~i~iiG~~d~GKSTL~~~L~~-----~-----giTi~~~~~~~~~-~~~~i~iiDtPGh~~f-----------~~~~~~ 79 (370)
T 2elf_A 22 ANVAIIGTEKSGRTSLAANLGK-----K-----GTSSDITMYNNDK-EGRNMVFVDAHSYPKT-----------LKSLIT 79 (370)
T ss_dssp EEEEEEESTTSSHHHHHHTTSE-----E-----EEESSSEEEEECS-SSSEEEEEECTTTTTC-----------HHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHh-----C-----CEEEEeeEEEEec-CCeEEEEEECCChHHH-----------HHHHHH
Confidence 3899999999999999999981 1 2333334444444 5678999999999873 222223
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcE-EEEEe-CcCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM-IVVFT-GGDE 150 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~iv~t-k~D~ 150 (174)
.+..+|++++|+| +......+++++..+... + .|. ++++| |+|+
T Consensus 80 ~~~~aD~ailVvd-~~g~~~qt~e~~~~~~~~-~----i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 80 ALNISDIAVLCIP-PQGLDAHTGECIIALDLL-G----FKHGIIALTRSDST 125 (370)
T ss_dssp HHHTCSEEEEEEC-TTCCCHHHHHHHHHHHHT-T----CCEEEEEECCGGGS
T ss_pred HHHHCCEEEEEEc-CCCCcHHHHHHHHHHHHc-C----CCeEEEEEEeccCC
Confidence 3466799999999 767777788877666543 2 344 89999 9999
No 163
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.59 E-value=4.8e-17 Score=129.50 Aligned_cols=116 Identities=16% Similarity=0.257 Sum_probs=82.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.++|+++|++|+|||||+++|++...... ...+.|.........+..+..+.+|||||+.++.. ...
T Consensus 4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~-----------~~~ 70 (537)
T 3izy_P 4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA-----------MRA 70 (537)
T ss_dssp CCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT-----------SBB
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH-----------HHH
Confidence 47899999999999999999997653222 22333443333333332456789999999887432 223
Q ss_pred hccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 100 MAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+..+|++++|+|++++....+.+.+..+... . .|+++++||+|+...
T Consensus 71 ~~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~---~--vPiIVViNKiDl~~~ 119 (537)
T 3izy_P 71 RGTQVTDIVILVVAADDGVMKQTVESIQHAKDA---H--VPIVLAINKCDKAEA 119 (537)
T ss_dssp SSSBSBSSCEEECBSSSCCCHHHHHHHHHHHTT---T--CCEEECCBSGGGTTT
T ss_pred HHHccCCEEEEEEECCCCccHHHHHHHHHHHHc---C--CcEEEEEeccccccc
Confidence 456778999999999888888887776655543 2 589999999999754
No 164
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=99.58 E-value=2.8e-14 Score=108.77 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=77.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccc--CCCCcce----------------------------------------
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA--SSSGVTS---------------------------------------- 57 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~--~~~~~t~---------------------------------------- 57 (174)
.++|+++|.+|+|||||+|+|+|......+. .+..++.
T Consensus 31 ~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i~g 110 (353)
T 2x2e_A 31 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 110 (353)
T ss_dssp CCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHhcc
Confidence 3689999999999999999999976432221 1110110
Q ss_pred -------eeEEEEEEEeCCcEEEEEeCCCCCCCCCC--hHHHHHHHHHHHHhcc-CCceEEEEEEeCCCCCCHHHHHHHH
Q 030624 58 -------TCEMQRTVLKDGQVVNVIDTPGLFDFSAG--SEFVGKEIVKCIGMAK-DGIHAVLVVFSVRSRFSQEEEAALH 127 (174)
Q Consensus 58 -------~~~~~~~~~~~~~~~~~iDtpG~~~~~~~--~~~~~~~~~~~~~~~~-~~~~~il~v~~~~~~~~~~~~~~l~ 127 (174)
......+.......+.+|||||+...... .......+...+..++ ...++++++++++..+...+. .+
T Consensus 111 ~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~--~~ 188 (353)
T 2x2e_A 111 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDA--LK 188 (353)
T ss_dssp TTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHH--HH
T ss_pred cCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHH--HH
Confidence 00001111112467999999999763221 2222223333333333 344667777787654544432 22
Q ss_pred HHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHhc
Q 030624 128 SLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 163 (174)
Q Consensus 128 ~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 163 (174)
.+....... .|+++|+||+|+.... ....++++
T Consensus 189 i~~~~~~~~--~~~i~V~NK~Dl~~~~-~~~~~~~~ 221 (353)
T 2x2e_A 189 VAKEVDPQG--QRTIGVITKLDLMDEG-TDARDVLE 221 (353)
T ss_dssp HHHHHCTTC--TTEEEEEECGGGSCTT-CCCHHHHT
T ss_pred HHHHhCcCC--CceEEEeccccccCcc-hhHHHHHh
Confidence 333332222 6899999999998653 22344444
No 165
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.57 E-value=5.2e-14 Score=115.79 Aligned_cols=120 Identities=21% Similarity=0.271 Sum_probs=80.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcc-c-cccc--------------CCCCcceeeEEEEEEEeCC-------cEEEE
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRA-F-KSRA--------------SSSGVTSTCEMQRTVLKDG-------QVVNV 74 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~-~-~~~~--------------~~~~~t~~~~~~~~~~~~~-------~~~~~ 74 (174)
.+.++|+++|+.|+|||||++.|+.... . ..+. ...+.|.........| ++ ..+.+
T Consensus 8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~-~~~~~~~~~~~i~l 86 (704)
T 2rdo_7 8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFW-SGMAKQYEPHRINI 86 (704)
T ss_pred ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEE-CCccccCCceeEEE
Confidence 4458999999999999999999974311 0 0000 0123444444445555 44 78999
Q ss_pred EeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 75 IDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 75 iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
|||||+.++ ...+..++..+|++|+|+|++++....+...+..+... . .|+++++||+|+...+
T Consensus 87 iDTPG~~df-----------~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~~~~~---~--ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 87 IDTPGHVDF-----------TIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQANKY---K--VPRIAFVNKMDRMGAN 150 (704)
T ss_pred EeCCCccch-----------HHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHHHHHc---C--CCEEEEEeCCCccccc
Confidence 999999873 22222334456999999999877777766665544332 2 5899999999997654
No 166
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.57 E-value=3.9e-15 Score=104.56 Aligned_cols=117 Identities=20% Similarity=0.200 Sum_probs=71.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+++++|++|||||||++.|++....... ....+.......+.+ ++. .+.++||||...... .
T Consensus 5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~-----------~ 70 (199)
T 2f9l_A 5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGQERYRR-----------I 70 (199)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCCSCEEEEEEEEE-TTEEEEEEEEECSSGGGTTC-----------C
T ss_pred eEEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceeEEEEEEEE-CCEEEEEEEEECCCchhhhh-----------h
Confidence 378999999999999999999987642221 111112222223334 443 567899999765321 1
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
....+..++++++|+|..+..+... ..++..+.... ....++++++||+|+..
T Consensus 71 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 71 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp CHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECTTCGG
T ss_pred hHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCeEEEEEECccccc
Confidence 1223456799999999884433222 34444444321 12368999999999864
No 167
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.57 E-value=2.6e-16 Score=124.41 Aligned_cols=116 Identities=16% Similarity=0.231 Sum_probs=80.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
+.++|+++|+.++|||||+++|++...... ...+.|.......+.+ ++..+.+|||||+.++... .
T Consensus 3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~~--e~~GIT~~i~~~~v~~-~~~~i~~iDTPGhe~f~~~-----------~ 68 (501)
T 1zo1_I 3 RAPVVTIMGHVDHGKTSLLEYIRSTKVASG--EAGGITQHIGAYHVET-ENGMITFLDTPGHAAFTSM-----------R 68 (501)
T ss_dssp CCCCEEEEESTTSSSHHHHHHHHHHHHSBT--TBCCCCCCSSCCCCCT-TSSCCCEECCCTTTCCTTS-----------B
T ss_pred CCeEEEEECCCCCCHHHHHHHHHcCCCccc--cCCCeeEeEEEEEEEE-CCEEEEEEECCCcHHHHHH-----------H
Confidence 347899999999999999999987543211 1122333333233333 4567899999999875322 2
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|++++..+.+.+.+..+... . .|+++++||+|+...
T Consensus 69 ~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~---~--vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 69 ARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAA---Q--VPVVVAVNKIDKPEA 118 (501)
T ss_dssp CSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHT---T--CCEEEEEECSSSSTT
T ss_pred HHHHhhCCEEEEEeecccCccHHHHHHHHHHHhc---C--ceEEEEEEecccccc
Confidence 2356778999999999877777777766554432 2 589999999999754
No 168
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=99.57 E-value=3.9e-14 Score=116.50 Aligned_cols=130 Identities=15% Similarity=0.166 Sum_probs=80.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----------------------------------------------
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS---------------------------------------------- 53 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~---------------------------------------------- 53 (174)
.++|+++|..++|||||+|+|+|....+.+....
T Consensus 51 lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~~g 130 (772)
T 3zvr_A 51 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVTG 130 (772)
T ss_dssp CSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhhcC
Confidence 3799999999999999999999987533331110
Q ss_pred ---CcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC--ChHHHHHHHHHHHHhc-cCCceEEEEEEeCCCCCCHHHH-HHH
Q 030624 54 ---GVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA--GSEFVGKEIVKCIGMA-KDGIHAVLVVFSVRSRFSQEEE-AAL 126 (174)
Q Consensus 54 ---~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~--~~~~~~~~~~~~~~~~-~~~~~~il~v~~~~~~~~~~~~-~~l 126 (174)
+.+.......+..+....+.++||||+..... ..+.....+.+.+..+ ...+|++++|+|++..+...+. .++
T Consensus 131 ~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll 210 (772)
T 3zvr_A 131 TNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIA 210 (772)
T ss_dssp STTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHH
T ss_pred CCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHH
Confidence 00001111222232345689999999987432 1222222233333222 2678999999999866666665 454
Q ss_pred HHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 127 HSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 127 ~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
+.+... ..|+++|+||+|+..+.
T Consensus 211 ~~L~~~-----g~pvIlVlNKiDlv~~~ 233 (772)
T 3zvr_A 211 KEVDPQ-----GQRTIGVITKLDLMDEG 233 (772)
T ss_dssp HHHCTT-----CSSEEEEEECTTSSCTT
T ss_pred HHHHhc-----CCCEEEEEeCcccCCcc
Confidence 444332 26999999999998753
No 169
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.32 E-value=3.3e-16 Score=110.40 Aligned_cols=119 Identities=18% Similarity=0.052 Sum_probs=75.6
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEE-eCCcEEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVL-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
.+..+|+++|.+|+|||||++.+++......... .+.......... .....+.+|||||..+ +..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~---t~~~~~~~~~~~~~~~~~l~i~Dt~G~~~-----------~~~ 93 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIP---TVFDNYSANVMVDGKPVNLGLWDTAGQED-----------YDR 93 (204)
Confidence 3458999999999999999999987653211111 111111111111 0234566999999875 233
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH--HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE--EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~--~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.....+..+|++++|+|.+++.+... ..++..+..... ..|+++|+||+|+...
T Consensus 94 ~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~---~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 94 LRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 149 (204)
Confidence 33445677899999999875443333 256666655432 2689999999999754
No 170
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.55 E-value=8e-14 Score=99.05 Aligned_cols=120 Identities=23% Similarity=0.163 Sum_probs=71.4
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
...+|+++|.+|+|||||+|.+++... +.......+.+. ....+.+ ++. .+.++||+|... . ..
T Consensus 36 ~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~--~~~~i~~-~~~~~~l~~~Dt~g~~~-----~-----~~ 102 (211)
T 2g3y_A 36 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDT--YERTLMV-DGESATIILLDMWENKG-----E-----NE 102 (211)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTE--EEEEEEE-TTEEEEEEEECCTTTTH-----H-----HH
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceee--EEEEEEE-CCeeeEEEEeecCCCcc-----h-----hh
Confidence 347899999999999999999997432 211111111111 1222333 333 467899998653 1 11
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.....++..+|++++|+|.+++-+... ..+...+.+... ....|+++|.||+|+..
T Consensus 103 ~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~-~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 103 WLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQ-TEDIPIILVGNKSDLVR 159 (211)
T ss_dssp HHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGG-GTTSCEEEEEECTTCGG
T ss_pred hHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CCCCcEEEEEEChHHhc
Confidence 122445677899999999985332222 234444443211 12368999999999864
No 171
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.55 E-value=1.7e-14 Score=116.40 Aligned_cols=119 Identities=18% Similarity=0.221 Sum_probs=71.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc-cc------------ccCCCCcceeeEEEEEEEeC----CcEEEEEeCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAF-KS------------RASSSGVTSTCEMQRTVLKD----GQVVNVIDTPGLFD 82 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~-~~------------~~~~~~~t~~~~~~~~~~~~----~~~~~~iDtpG~~~ 82 (174)
-++++++|+.++|||||+++|+..... .. .....+.|.........|.. ...+.+|||||+.+
T Consensus 4 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~d 83 (599)
T 3cb4_D 4 IRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVD 83 (599)
T ss_dssp EEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCchH
Confidence 478999999999999999999753210 00 00112344444444555531 25789999999986
Q ss_pred CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
+ ..++.+.+ ..+|++++|+|++++....+...+...... . .|+++++||+|+...+
T Consensus 84 F-------~~ev~~~l----~~aD~aILVVDa~~gv~~qt~~~~~~~~~~---~--ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 84 F-------SYEVSRSL----AACEGALLVVDAGQGVEAQTLANCYTAMEM---D--LEVVPVLNKIDLPAAD 139 (599)
T ss_dssp G-------HHHHHHHH----HHCSEEEEEEETTTCCCTHHHHHHHHHHHT---T--CEEEEEEECTTSTTCC
T ss_pred H-------HHHHHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHHC---C--CCEEEeeeccCccccc
Confidence 2 22333333 345999999999888887776655444332 2 5899999999998754
No 172
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.55 E-value=4.6e-14 Score=109.30 Aligned_cols=140 Identities=14% Similarity=0.163 Sum_probs=79.2
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC---cEEEEEeCCCCCCCC
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG---QVVNVIDTPGLFDFS 84 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~---~~~~~iDtpG~~~~~ 84 (174)
.++++++.+.|....++|+|+||+|||||+|+|+|.....................+..... ..+.++|+||+....
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~ 109 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQI 109 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-C
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhcc
Confidence 56788999999444499999999999999999999853211111101111111222222122 267999999998642
Q ss_pred CCh---HH----HHHHHHHHHHhc---------cCC--ceE-EEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624 85 AGS---EF----VGKEIVKCIGMA---------KDG--IHA-VLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 145 (174)
Q Consensus 85 ~~~---~~----~~~~~~~~~~~~---------~~~--~~~-il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~ 145 (174)
... .. +...+...+... ... +|+ ++|+.|+..++...+.++++.|.. . .++++|+
T Consensus 110 ~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~~----~--~~vI~Vi 183 (427)
T 2qag_B 110 NKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLDS----K--VNIIPII 183 (427)
T ss_dssp CHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTCS----C--SEEEEEE
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHhh----C--CCEEEEE
Confidence 211 11 122222222211 112 344 555557776788888777766652 2 5899999
Q ss_pred eCcCCCCC
Q 030624 146 TGGDELED 153 (174)
Q Consensus 146 tk~D~~~~ 153 (174)
||+|.+.+
T Consensus 184 ~KtD~Lt~ 191 (427)
T 2qag_B 184 AKADAISK 191 (427)
T ss_dssp SCGGGSCH
T ss_pred cchhccch
Confidence 99999876
No 173
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.55 E-value=3.1e-14 Score=110.41 Aligned_cols=136 Identities=15% Similarity=0.105 Sum_probs=80.2
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChH
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSE 88 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~ 88 (174)
.+++++.+.+ ..++++|++|||||||+++|++..+.... ....|.......+.+.....+.++|+||+.+......
T Consensus 148 ~~i~lelk~g--~~VgLVG~~gAGKSTLL~~Lsg~~~~i~~--~~ftTl~p~~G~V~~~~~~~~~l~DtpGli~~a~~~~ 223 (416)
T 1udx_A 148 RRLRLELMLI--ADVGLVGYPNAGKSSLLAAMTRAHPKIAP--YPFTTLSPNLGVVEVSEEERFTLADIPGIIEGASEGK 223 (416)
T ss_dssp EEEEEEECCS--CSEEEECCGGGCHHHHHHHHCSSCCEECC--CTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGGGSC
T ss_pred eeeeeEEcCC--CEEEEECCCCCcHHHHHHHHHcCCccccC--cccceecceeeEEEecCcceEEEEeccccccchhhhh
Confidence 4455555555 67999999999999999999998642221 1222333333334442237899999999976321111
Q ss_pred HHHHHHHHHHHhccCCceEEEEEEeCCCCCCHH-HHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 89 FVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE-EEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~-~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+...+.+. ..+++.+++++|++ .-... ...+.+.+..+...-..+|.++++||+|....
T Consensus 224 ~L~~~fl~~----~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 224 GLGLEFLRH----IARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp CSCHHHHHH----HTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred hhhHHHHHH----HHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 111222222 34679999999996 21111 13333344433222123688999999998754
No 174
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.55 E-value=3.3e-14 Score=114.66 Aligned_cols=119 Identities=18% Similarity=0.277 Sum_probs=74.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc-ccc-c-----------cCCCCcceeeEEEEEEEeC----CcEEEEEeCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRA-FKS-R-----------ASSSGVTSTCEMQRTVLKD----GQVVNVIDTPGLFD 82 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~-~~~-~-----------~~~~~~t~~~~~~~~~~~~----~~~~~~iDtpG~~~ 82 (174)
.++++++|+.++|||||+++|+.... ... + ....+.|.........|.. ...+.+|||||+.+
T Consensus 6 irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh~d 85 (600)
T 2ywe_A 6 VRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGHVD 85 (600)
T ss_dssp EEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCSGG
T ss_pred ceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCcHh
Confidence 47899999999999999999975311 000 0 0112334333333444421 24688999999987
Q ss_pred CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
+ ..++.+. +..+|++++|+|++++....+...+...... . .|+++++||+|+...+
T Consensus 86 F-------~~ev~r~----l~~aD~aILVVDa~~gv~~qt~~~~~~a~~~---~--ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 86 F-------SYEVSRA----LAACEGALLLIDASQGIEAQTVANFWKAVEQ---D--LVIIPVINKIDLPSAD 141 (600)
T ss_dssp G-------HHHHHHH----HHTCSEEEEEEETTTBCCHHHHHHHHHHHHT---T--CEEEEEEECTTSTTCC
T ss_pred H-------HHHHHHH----HHhCCEEEEEEECCCCccHHHHHHHHHHHHC---C--CCEEEEEeccCccccC
Confidence 2 1223333 3456999999999888888776665444332 2 5899999999997654
No 175
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.54 E-value=4.9e-14 Score=103.68 Aligned_cols=127 Identities=20% Similarity=0.261 Sum_probs=75.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC-----CcceeeEEEEEEEeC---CcEEEEEeCCCCCCCCCCh---HH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS-----GVTSTCEMQRTVLKD---GQVVNVIDTPGLFDFSAGS---EF 89 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~-----~~t~~~~~~~~~~~~---~~~~~~iDtpG~~~~~~~~---~~ 89 (174)
.+++++|+||||||||+|+|+|...+..|.... ..+............ ...+.++|+||+....... ..
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~~~ 82 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCWEP 82 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCSHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHHHH
Confidence 689999999999999999999987666552211 111111111111101 2367999999997643211 11
Q ss_pred HH----HHHHHHHHh----------ccCCceEEEEEEeC-CCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 90 VG----KEIVKCIGM----------AKDGIHAVLVVFSV-RSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 90 ~~----~~~~~~~~~----------~~~~~~~il~v~~~-~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+. ..+...... ...++++.++++|. ++++++.+.+.++.+.+. .++++|+||+|.+..
T Consensus 83 i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~------~~vI~Vi~K~D~lt~ 155 (270)
T 3sop_A 83 IEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV------VNIIPVIAKADTMTL 155 (270)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT------SEEEEEETTGGGSCH
T ss_pred HHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc------CcEEEEEeccccCCH
Confidence 11 112222111 23456888998885 468999997777766653 489999999999876
No 176
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.54 E-value=5.7e-14 Score=114.97 Aligned_cols=115 Identities=27% Similarity=0.304 Sum_probs=80.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccc--ccccC--------------CCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAF--KSRAS--------------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~--~~~~~--------------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
.++++++|++|+|||||++.|++.... ..+.. ..+.+.........+ ....+.++||||+.++
T Consensus 9 ~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~-~~~~~nliDTpG~~~f 87 (665)
T 2dy1_A 9 IRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLF-RGHRVFLLDAPGYGDF 87 (665)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEE-TTEEEEEEECCCSGGG
T ss_pred CcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEee-CCEEEEEEeCCCccch
Confidence 489999999999999999999854321 11100 012344444444445 6778999999998762
Q ss_pred CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
.......+ ..+|.+++|+|+++++......+++.+... . .|+++++||+|+.
T Consensus 88 -------~~~~~~~l----~~ad~~ilVvD~~~g~~~qt~~~~~~~~~~---~--ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 88 -------VGEIRGAL----EAADAALVAVSAEAGVQVGTERAWTVAERL---G--LPRMVVVTKLDKG 139 (665)
T ss_dssp -------HHHHHHHH----HHCSEEEEEEETTTCSCHHHHHHHHHHHHT---T--CCEEEEEECGGGC
T ss_pred -------HHHHHHHH----hhcCcEEEEEcCCcccchhHHHHHHHHHHc---c--CCEEEEecCCchh
Confidence 12333333 345999999999888888888777666553 2 5899999999997
No 177
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.54 E-value=2e-14 Score=118.16 Aligned_cols=120 Identities=18% Similarity=0.196 Sum_probs=75.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcce-------------ee---------------------------
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTS-------------TC--------------------------- 59 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~-------------~~--------------------------- 59 (174)
..+|+++|.+|+|||||+|+|+|......+.. +.|. ..
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg~~~~~v~~~--p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~~ 146 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIGENLLPSDVN--PCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAEA 146 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHTSSCSCCCCC--TTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCCCC--CCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHHH
Confidence 37999999999999999999999875433321 1120 00
Q ss_pred --------------EEEEEEEeCC---cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHH
Q 030624 60 --------------EMQRTVLKDG---QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE 122 (174)
Q Consensus 60 --------------~~~~~~~~~~---~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~ 122 (174)
....+.++.. ..+.+|||||+.+... ....+..++..+|++++|+|+++.++..+
T Consensus 147 ~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~~--------~~~~~~~~i~~aD~vL~Vvda~~~~s~~e 218 (695)
T 2j69_A 147 KKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEA--------RNELSLGYVNNCHAILFVMRASQPCTLGE 218 (695)
T ss_dssp HHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHHT--------CHHHHTHHHHSSSEEEEEEETTSTTCHHH
T ss_pred HHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchhh--------HHHHHHHHHHhCCEEEEEEeCCCccchhH
Confidence 0000111000 3589999999875211 22333344567899999999987777776
Q ss_pred HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 123 EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 123 ~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+. +.... ...|+++|+||+|+...
T Consensus 219 ~~~l~---~~l~~-~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 219 RRYLE---NYIKG-RGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp HHHHH---HHTTT-SCCCEEEEEECGGGGGG
T ss_pred HHHHH---HHHHh-hCCCEEEEEECcccccc
Confidence 55442 22111 12579999999998754
No 178
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.53 E-value=4.8e-14 Score=98.48 Aligned_cols=117 Identities=21% Similarity=0.215 Sum_probs=71.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~~ 97 (174)
..+++++|++|||||||++.+++....... ....+.......+.+ ++. .+.++||||.......
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~--~~t~~~~~~~~~i~~-~g~~~~~~i~Dt~g~~~~~~~----------- 94 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLES--KSTIGVEFATRSIQV-DGKTIKAQIWDTAGLERYRAI----------- 94 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSCCCCSC--CCCCSEEEEEEEEEE-TTEEEEEEEEEECSCCSSSCC-----------
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCCCCCCC--CCccceEEEEEEEEE-CCEEEEEEEEECCCCcchhhh-----------
Confidence 378999999999999999999987643221 122222222233334 443 3457999998763221
Q ss_pred HHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 98 IGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 98 ~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+......++++++|+|..+..+... ..++..+.... ....++++++||+|+..
T Consensus 95 ~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 95 TSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHA--DSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp CHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS--CTTCEEEEEEECGGGGG
T ss_pred hHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhc--CCCCcEEEEEECccccc
Confidence 1223456688999999874322222 23444443321 12368999999999864
No 179
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.53 E-value=1.5e-14 Score=116.81 Aligned_cols=115 Identities=17% Similarity=0.248 Sum_probs=77.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe-----------------CCcEEEEEeCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK-----------------DGQVVNVIDTPGLFD 82 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-----------------~~~~~~~iDtpG~~~ 82 (174)
.++|+++|+.++|||||+++|++....... ..+.|.........+. ....+.+|||||+.+
T Consensus 5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~~~e--~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~ 82 (594)
T 1g7s_A 5 SPIVSVLGHVDHGKTTLLDHIRGSAVASRE--AGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA 82 (594)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHSCC------CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred CcEEEEECCCCCcHHHHHHHHhcccCcccc--CCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHH
Confidence 478999999999999999999875432111 1112221111111110 112589999999987
Q ss_pred CCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
+.... ...+..+|++++|+|+++++...+.+.+..+... . .|+++++||+|+..
T Consensus 83 F~~~~-----------~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~---~--vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 83 FTTLR-----------KRGGALADLAILIVDINEGFKPQTQEALNILRMY---R--TPFVVAANKIDRIH 136 (594)
T ss_dssp CTTSB-----------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CCEEEEEECGGGST
T ss_pred HHHHH-----------HHHHhhCCEEEEEEECCCCccHhHHHHHHHHHHc---C--CeEEEEeccccccc
Confidence 54221 2345678999999999988888887777765542 2 58999999999964
No 180
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.52 E-value=4.2e-14 Score=106.37 Aligned_cols=115 Identities=20% Similarity=0.112 Sum_probs=75.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcE--EEEEeCCCCCCCCCChHHHHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQV--VNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~--~~~iDtpG~~~~~~~~~~~~~~~~~~~ 98 (174)
.+|+++|.+|+|||||++.+++....... .+.+.......... ++.. +.++||||.... ....
T Consensus 156 ~~i~i~G~~~~GKssli~~~~~~~~~~~~---~~t~~~~~~~~~~~-~~~~~~~~l~Dt~G~~~~-----------~~~~ 220 (332)
T 2wkq_A 156 IKCVVVGDGAVGKTCLLISYTTNAFPGEY---IPTVFDNYSANVMV-DGKPVNLGLWDTAGLEDY-----------DRLR 220 (332)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCCSC---CCCSEEEEEEEEEE-TTEEEEEEEEEECCCGGG-----------TTTG
T ss_pred eEEEEECCCCCChHHHHHHHHhCCCCccc---CCcccceeEEEEEE-CCEEEEEEEEeCCCchhh-----------hHHH
Confidence 78999999999999999999876532121 11122212222223 4443 559999998752 2334
Q ss_pred HhccCCceEEEEEEeCCCCCCHHHH--HHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 99 GMAKDGIHAVLVVFSVRSRFSQEEE--AALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 99 ~~~~~~~~~il~v~~~~~~~~~~~~--~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
...+..+|++++|+|.+++.+..+. .++..+..... ..|+++|+||+|+...
T Consensus 221 ~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~p~ilv~nK~Dl~~~ 274 (332)
T 2wkq_A 221 PLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHCP---NTPIILVGTKLDLRDD 274 (332)
T ss_dssp GGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCT---TSCEEEEEECHHHHTC
T ss_pred HHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCC---CCcEEEEEEchhcccc
Confidence 4567889999999999854433332 45555655432 3699999999998654
No 181
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.52 E-value=6.2e-14 Score=118.98 Aligned_cols=119 Identities=17% Similarity=0.180 Sum_probs=80.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccc--------------cccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFK--------------SRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~--------------~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
.+..+|+++|+.++|||||+++|++...-. ......+.|.......+.. .+..+.+|||||+.+
T Consensus 294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~-~~~kI~IIDTPGHed- 371 (1289)
T 3avx_A 294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDT-PTRHYAHVDCPGHAD- 371 (1289)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEEC-SSCEEEEEECCCHHH-
T ss_pred CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcC-CCEEEEEEECCChHH-
Confidence 345889999999999999999998741100 0011223343333333333 567899999999875
Q ss_pred CCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEEEEeCcCCCCC
Q 030624 84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIVVFTGGDELED 153 (174)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~iv~tk~D~~~~ 153 (174)
+.......+..+|++++|+|++++....+.+++..+... + .| +++++||+|+...
T Consensus 372 ----------F~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~l-g----IP~IIVVINKiDLv~d 427 (1289)
T 3avx_A 372 ----------YVKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQV-G----VPYIIVFLNKCDMVDD 427 (1289)
T ss_dssp ----------HHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHH-T----CSCEEEEEECCTTCCC
T ss_pred ----------HHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHc-C----CCeEEEEEeecccccc
Confidence 444455577889999999999878777777777665543 1 35 7899999999863
No 182
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.52 E-value=6.2e-14 Score=105.13 Aligned_cols=121 Identities=14% Similarity=0.107 Sum_probs=75.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA 101 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~ 101 (174)
+++++|.+|+||||+++.+.+...+.. .....+|.......+ .....+.+|||||..++.... + .....
T Consensus 1 KIvllGdsgvGKTSLl~~~~~~~~~~~-~~~~~~Tig~~~~~v--~~~v~LqIWDTAGQErf~~~~--l------~~~~y 69 (331)
T 3r7w_B 1 MVLLMGVRRCGKSSICKVVFHNMQPLD-TLYLESTSNPSLEHF--STLIDLAVMELPGQLNYFEPS--Y------DSERL 69 (331)
T ss_dssp CEEEECSTTSSTTHHHHHHHSCCCSGG-GTTCCCCCSCCCEEE--CSSSCEEEEECCSCSSSCCCS--H------HHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHcCCCCCc-cceecCeeeeeeEEE--ccEEEEEEEECCCchhccchh--h------hhhhh
Confidence 478999999999999998876543221 112233443333332 244679999999999853211 0 11234
Q ss_pred cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 102 KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 102 ~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+++++++++|+|.++++......+.+.+.+........|++++.||+|+..+
T Consensus 70 yr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 70 FKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp HTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 6788999999999866332223333333332111223689999999999765
No 183
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.52 E-value=1.8e-13 Score=106.16 Aligned_cols=128 Identities=20% Similarity=0.247 Sum_probs=69.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCC----CCcceeeEEEEEEEe---CCcEEEEEeCCCCCCCCCCh---HH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASS----SGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSAGS---EF 89 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~----~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~~~---~~ 89 (174)
...|+++|++|+|||||+|+|+|...+..+... ...+........... ....+.++||||+....... ..
T Consensus 31 sf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~ 110 (418)
T 2qag_C 31 EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQP 110 (418)
T ss_dssp CEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC-----------CHH
T ss_pred CEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHH
Confidence 467899999999999999999998754332110 011222111111110 12367899999998642211 11
Q ss_pred HHH----HHHHH-------HHhcc--CCceEEEEEEeCC-CCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 90 VGK----EIVKC-------IGMAK--DGIHAVLVVFSVR-SRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 90 ~~~----~~~~~-------~~~~~--~~~~~il~v~~~~-~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+.. .+... .+..+ +++|+++|++..+ ..++..+..+++.+.. . .++++|+||+|+...
T Consensus 111 i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~----~--v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 111 VIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLTP 182 (418)
T ss_dssp HHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT----T--SEEEEEEESTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc----c--CcEEEEEEcccCccH
Confidence 111 11111 12223 3456788887765 5788888777766542 2 589999999999864
No 184
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.51 E-value=4.2e-14 Score=111.51 Aligned_cols=118 Identities=19% Similarity=0.205 Sum_probs=67.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc-cc-------------cc---------------cCCCCcceeeEEEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRA-FK-------------SR---------------ASSSGVTSTCEMQRTVLKDG 69 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~-~~-------------~~---------------~~~~~~t~~~~~~~~~~~~~ 69 (174)
+..+|+++|+.++|||||++.|+.... +. .| ....+.|.......+.+ ++
T Consensus 42 ~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~-~~ 120 (467)
T 1r5b_A 42 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFET-EH 120 (467)
T ss_dssp EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEEC-SS
T ss_pred CeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEec-CC
Confidence 457899999999999999999874210 00 00 01123454444444555 56
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-------CHHHHHHHHHHHHHHhhhhcCcEE
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-------SQEEEAALHSLQTLFGKKIFDYMI 142 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-------~~~~~~~l~~l~~~~~~~~~~~~~ 142 (174)
..+.+|||||+.+ +...+...+..+|++++|+|++++. ...+.+.+..+... .. ++++
T Consensus 121 ~~~~iiDtPGh~~-----------f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~---~v-p~ii 185 (467)
T 1r5b_A 121 RRFSLLDAPGHKG-----------YVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQ---GI-NHLV 185 (467)
T ss_dssp EEEEECCCCC----------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHT---TC-SSEE
T ss_pred eEEEEEECCCcHH-----------HHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHc---CC-CEEE
Confidence 7899999999876 3333344567889999999998653 13444554433322 11 2489
Q ss_pred EEEeCcCCCC
Q 030624 143 VVFTGGDELE 152 (174)
Q Consensus 143 iv~tk~D~~~ 152 (174)
+++||+|+..
T Consensus 186 vviNK~Dl~~ 195 (467)
T 1r5b_A 186 VVINKMDEPS 195 (467)
T ss_dssp EEEECTTSTT
T ss_pred EEEECccCCC
Confidence 9999999964
No 185
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=99.50 E-value=2.2e-13 Score=105.26 Aligned_cols=90 Identities=14% Similarity=0.051 Sum_probs=45.5
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe--------------------C---CcEEEEEeCC
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------D---GQVVNVIDTP 78 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~---~~~~~~iDtp 78 (174)
+|+++|.+|+|||||+|+|++... ... ..++.|.........+. + ...+.++|||
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~~-~~~-~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtp 79 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVDV-EIA-NYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVA 79 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC-ccc-CCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECC
Confidence 789999999999999999998762 111 11222322222211110 1 2468999999
Q ss_pred CCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC
Q 030624 79 GLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR 117 (174)
Q Consensus 79 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~ 117 (174)
|+.++.... +.+.......+..+|++++|+|+++.
T Consensus 80 G~~~~a~~~----~~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 80 GLVPGAHEG----RGLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -------------------CCCSSTTCSEEEEEEETTCC
T ss_pred Ccccchhhh----hhHHHHHHHHHhcCCEEEEEEecccc
Confidence 997632211 11222223456889999999999753
No 186
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.50 E-value=1.4e-15 Score=122.92 Aligned_cols=119 Identities=18% Similarity=0.197 Sum_probs=61.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccc--------------c---------------cCCCCcceeeEEEEEEEeCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKS--------------R---------------ASSSGVTSTCEMQRTVLKDG 69 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~--------------~---------------~~~~~~t~~~~~~~~~~~~~ 69 (174)
...+|+++|++++|||||+|.|++...... | ....+.|.......+.+ .+
T Consensus 176 ~~~~I~iiG~~d~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~-~~ 254 (592)
T 3mca_A 176 PVVHLVVTGHVDSGKSTMLGRIMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFES-DK 254 (592)
T ss_dssp CEEEEEEECCSSSTHHHHHHHHHHHHHCC---------------------------------------------------
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEe-CC
Confidence 457899999999999999999964211000 0 01223455444444444 46
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC-----C--CHHHHHHHHHHHHHHhhhhcCcEE
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR-----F--SQEEEAALHSLQTLFGKKIFDYMI 142 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~-----~--~~~~~~~l~~l~~~~~~~~~~~~~ 142 (174)
..+.+|||||+.++ ...+...+..+|++|+|+|++++ + ...+.+.+..+... +. ++++
T Consensus 255 ~~i~iiDTPGh~~f-----------~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~l-gi---p~iI 319 (592)
T 3mca_A 255 KIYEIGDAPGHRDF-----------ISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRAL-GI---SEIV 319 (592)
T ss_dssp ----CCEEESSSEE-----------EEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHS-SC---CCEE
T ss_pred eEEEEEECCChHHH-----------HHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHc-CC---CeEE
Confidence 78899999998863 11222345678999999999753 3 56666666555543 21 3589
Q ss_pred EEEeCcCCCCC
Q 030624 143 VVFTGGDELED 153 (174)
Q Consensus 143 iv~tk~D~~~~ 153 (174)
+|+||+|+...
T Consensus 320 vviNKiDl~~~ 330 (592)
T 3mca_A 320 VSVNKLDLMSW 330 (592)
T ss_dssp EEEECGGGGTT
T ss_pred EEEeccccccc
Confidence 99999999763
No 187
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.48 E-value=5.1e-14 Score=112.79 Aligned_cols=121 Identities=17% Similarity=0.141 Sum_probs=73.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEE----EEEEe---CCcEEEEEeCCCCCCCCCChHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQ----RTVLK---DGQVVNVIDTPGLFDFSAGSEFV 90 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~----~~~~~---~~~~~~~iDtpG~~~~~~~~~~~ 90 (174)
....+|+++|.+|+|||||+|++++...........+.+...... ..... ....+.++||||.........
T Consensus 39 ~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~-- 116 (535)
T 3dpu_A 39 LQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQ-- 116 (535)
T ss_dssp CCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCH--
T ss_pred ccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHH--
Confidence 345899999999999999999999876321111111111111000 00010 246799999999776432221
Q ss_pred HHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 91 GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 91 ~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
.++.++|++++|+|+++ . .....++..+..... . .|+++|.||+|+....
T Consensus 117 ---------~~l~~~d~ii~V~D~s~-~-~~~~~~~~~l~~~~~-~--~pvilV~NK~Dl~~~~ 166 (535)
T 3dpu_A 117 ---------FFMTRSSVYMLLLDSRT-D-SNKHYWLRHIEKYGG-K--SPVIVVMNKIDENPSY 166 (535)
T ss_dssp ---------HHHHSSEEEEEEECGGG-G-GGHHHHHHHHHHHSS-S--CCEEEEECCTTTCTTC
T ss_pred ---------HHccCCcEEEEEEeCCC-c-hhHHHHHHHHHHhCC-C--CCEEEEEECCCccccc
Confidence 22345799999999973 3 334667777766532 2 6999999999997643
No 188
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.47 E-value=1.3e-12 Score=107.74 Aligned_cols=121 Identities=26% Similarity=0.311 Sum_probs=85.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCccc--c-----c---------ccCCCCcceeeEEEEEEEeC------CcEEEEE
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAF--K-----S---------RASSSGVTSTCEMQRTVLKD------GQVVNVI 75 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~--~-----~---------~~~~~~~t~~~~~~~~~~~~------~~~~~~i 75 (174)
.+-++|+|+|+.++|||||..+|+-.... . . .+...++|.........|.. +..+.+|
T Consensus 11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI 90 (709)
T 4fn5_A 11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI 90 (709)
T ss_dssp GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence 44588999999999999999988632110 0 0 01223566666666666631 4579999
Q ss_pred eCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCC
Q 030624 76 DTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 76 DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
||||+.++. .++.+.++.+ |++|+|+|+.+++...++..++...+.. .|.++++||+|....+
T Consensus 91 DTPGHvDF~-------~Ev~~aLr~~----DgavlvVDaveGV~~qT~~v~~~a~~~~-----lp~i~~iNKiDr~~a~ 153 (709)
T 4fn5_A 91 DTPGHVDFT-------IEVERSLRVL----DGAVVVFCGTSGVEPQSETVWRQANKYG-----VPRIVYVNKMDRQGAN 153 (709)
T ss_dssp CCCSCTTCH-------HHHHHHHHHC----SEEEEEEETTTCSCHHHHHHHHHHHHHT-----CCEEEEEECSSSTTCC
T ss_pred eCCCCcccH-------HHHHHHHHHh----CeEEEEEECCCCCchhHHHHHHHHHHcC-----CCeEEEEccccccCcc
Confidence 999999853 5566666666 9999999999899999988877666653 5889999999997764
No 189
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.47 E-value=1.2e-13 Score=115.63 Aligned_cols=117 Identities=23% Similarity=0.315 Sum_probs=77.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccc--------------cCCCCcceeeEEEEEEEe---------------CC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSR--------------ASSSGVTSTCEMQRTVLK---------------DG 69 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~--------------~~~~~~t~~~~~~~~~~~---------------~~ 69 (174)
..++|+++|+.|+|||||+++|+........ ....+.|.........|. .+
T Consensus 18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~ 97 (842)
T 1n0u_A 18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS 97 (842)
T ss_dssp GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence 4578999999999999999999864211000 001223433333444442 14
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcC
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGD 149 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D 149 (174)
..+.+|||||+.++. .+.. .++..+|++++|+|+.++....+...+..+.. .. .|+++++||+|
T Consensus 98 ~~i~liDTPG~~df~-------~~~~----~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~~---~~--~p~ilviNK~D 161 (842)
T 1n0u_A 98 FLINLIDSPGHVDFS-------SEVT----AALRVTDGALVVVDTIEGVCVQTETVLRQALG---ER--IKPVVVINKVD 161 (842)
T ss_dssp EEEEEECCCCCCSSC-------HHHH----HHHHTCSEEEEEEETTTBSCHHHHHHHHHHHH---TT--CEEEEEEECHH
T ss_pred ceEEEEECcCchhhH-------HHHH----HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHH---cC--CCeEEEEECCC
Confidence 578999999999843 1222 23445699999999998888887665543332 22 58899999999
Q ss_pred CC
Q 030624 150 EL 151 (174)
Q Consensus 150 ~~ 151 (174)
+.
T Consensus 162 ~~ 163 (842)
T 1n0u_A 162 RA 163 (842)
T ss_dssp HH
T ss_pred cc
Confidence 86
No 190
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.46 E-value=1.3e-13 Score=96.35 Aligned_cols=119 Identities=23% Similarity=0.174 Sum_probs=67.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEEEeCCc--EEEEEeCCCCCCCCCChHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTVLKDGQ--VVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~--~~~~iDtpG~~~~~~~~~~~~~~~~~ 96 (174)
..+|+++|.+|+|||||+|.+++... +.......+.+. ....+.+ ++. .+.++||+|..... . .
T Consensus 6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~l~~~Dt~~~~~~~---~-----~-- 72 (192)
T 2cjw_A 6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLGEDT--YERTLMV-DGESATIILLDMWENKGEN---E-----W-- 72 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSCCC----GGGCTTE--EEEEEEE-TTEEEEEEEECCCCC-------C-----T--
T ss_pred eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccccceeE--EEEEEEE-CCeEEEEEEEEeccCcchh---h-----h--
Confidence 47999999999999999999986321 111111111111 1222333 343 45789999865410 0 0
Q ss_pred HHHhccCCceEEEEEEeCCCCCCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCC
Q 030624 97 CIGMAKDGIHAVLVVFSVRSRFSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 97 ~~~~~~~~~~~il~v~~~~~~~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
....++..+|++++|+|.+++-+... ..+...+.+.... ...|+++|.||+|+..
T Consensus 73 ~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~-~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 73 LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT-EDIPIILVGNKSDLVR 128 (192)
T ss_dssp TGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTT-SCCCEEEEEECTTCGG
T ss_pred HHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCC-CCCeEEEEEechhhhc
Confidence 01122334699999999985433332 3444445443211 1268999999999864
No 191
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.45 E-value=5.9e-14 Score=114.41 Aligned_cols=118 Identities=18% Similarity=0.256 Sum_probs=86.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC---Cccccc----ccC---------CCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG---RRAFKS----RAS---------SSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFS 84 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~---~~~~~~----~~~---------~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~ 84 (174)
++|+|+|+.++|||||..+|+- ...... +.. ..+.|.......+.| ++..+.+|||||+.++.
T Consensus 3 RNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~-~~~~iNlIDTPGH~DF~ 81 (638)
T 3j25_A 3 INIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQW-ENTKVNIIDTPGHMDFL 81 (638)
T ss_dssp CCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBC-SSCBCCCEECCCSSSTH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEE-CCEEEEEEECCCcHHHH
Confidence 6799999999999999998852 211100 000 015566666666777 78889999999999842
Q ss_pred CChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh
Q 030624 85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND 155 (174)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~ 155 (174)
.++.+.+ +-+|++++|+|+.+++...++..++...+.. .|.++++||+|....+.
T Consensus 82 -------~Ev~raL----~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~-----lp~i~~INKmDr~~a~~ 136 (638)
T 3j25_A 82 -------AEVYRSL----SVLDGAILLISAKDGVQAQTRILFHALRKMG-----IPTIFFINKIDQNGIDL 136 (638)
T ss_dssp -------HHHHHHH----TTCSEEECCEESSCTTCSHHHHHHHHHHHHT-----CSCEECCEECCSSSCCS
T ss_pred -------HHHHHHH----HHhCEEEEEEeCCCCCcHHHHHHHHHHHHcC-----CCeEEEEeccccccCCH
Confidence 3344444 4459999999999899999988887776653 57899999999987653
No 192
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.38 E-value=5e-12 Score=94.36 Aligned_cols=128 Identities=20% Similarity=0.187 Sum_probs=63.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC-cccccccCC----CCcceeeEEEEEEEe---CCcEEEEEeCCCCCCCCC---ChH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGR-RAFKSRASS----SGVTSTCEMQRTVLK---DGQVVNVIDTPGLFDFSA---GSE 88 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~-~~~~~~~~~----~~~t~~~~~~~~~~~---~~~~~~~iDtpG~~~~~~---~~~ 88 (174)
...|+++|++|+|||||+|.|++. ..+..+... ...+........... ....+.++||||+..... ...
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~ 97 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFK 97 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC-----------CT
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHHHHH
Confidence 367899999999999999999986 433333110 011211111122211 124689999999953211 001
Q ss_pred HHHH----HHHHHHHh---------ccCCceEEEEEEeCCC-CCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 89 FVGK----EIVKCIGM---------AKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 89 ~~~~----~~~~~~~~---------~~~~~~~il~v~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.+.. .....+.. ...++++++|+++.+. +++..+.+.+ +... .. .++++|+||.|+...
T Consensus 98 ~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l---~~l~-~~--~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 98 TIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFM---KAIH-NK--VNIVPVIAKADTLTL 170 (301)
T ss_dssp THHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHH---HHHT-TT--SCEEEEECCGGGSCH
T ss_pred HHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHH---HHHH-hc--CCEEEEEEeCCCCCH
Confidence 1111 11111111 1234577888877643 4888775443 3332 22 489999999999764
No 193
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.29 E-value=2e-11 Score=99.11 Aligned_cols=128 Identities=19% Similarity=0.172 Sum_probs=69.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCccc-ccccCCCCccee------------eE----------------------------
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAF-KSRASSSGVTST------------CE---------------------------- 60 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~-~~~~~~~~~t~~------------~~---------------------------- 60 (174)
.++++|++|||||||+++|+|...+ ..|......... ..
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~ 126 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIA 126 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhc
Confidence 4999999999999999999998755 344322211110 00
Q ss_pred -----------EEEEEEeCCcEEEEEeCCCCCCCC--CChHHHHHHHHHHHHhccCCc-eEEEEEEeCCCCCCHHHHHHH
Q 030624 61 -----------MQRTVLKDGQVVNVIDTPGLFDFS--AGSEFVGKEIVKCIGMAKDGI-HAVLVVFSVRSRFSQEEEAAL 126 (174)
Q Consensus 61 -----------~~~~~~~~~~~~~~iDtpG~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~il~v~~~~~~~~~~~~~~l 126 (174)
...........+.++|.||+.... .........+...+..+.... ..++++++++..+ .....+
T Consensus 127 ~~~~~~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~--a~~~~l 204 (608)
T 3szr_A 127 GEGMGISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDI--ATTEAL 204 (608)
T ss_dssp CSSSCCCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCT--TTCHHH
T ss_pred CCccccchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchh--ccHHHH
Confidence 000111122458999999987632 223344556666666644444 4455555544222 233444
Q ss_pred HHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 127 HSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 127 ~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+.+....... .++++|+||+|++..
T Consensus 205 ~la~~v~~~g--~rtI~VlTK~Dlv~~ 229 (608)
T 3szr_A 205 SMAQEVDPEG--DRTIGILTKPDLVDK 229 (608)
T ss_dssp HHHHHHCSSC--CSEEEEEECGGGSSS
T ss_pred HHHHHHhhcC--CceEEEecchhhcCc
Confidence 4455543222 589999999999865
No 194
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=99.28 E-value=1.1e-11 Score=94.14 Aligned_cols=139 Identities=10% Similarity=0.101 Sum_probs=81.6
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEE-EEEEEeCCcEEEEEeCCCCCC
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEM-QRTVLKDGQVVNVIDTPGLFD 82 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~iDtpG~~~ 82 (174)
+..+.++++++.+.+ ..++++||||||||||++.|+|...+..|............ ......+....++.+.+.+..
T Consensus 16 ~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p 93 (359)
T 3fvq_A 16 NTPVLNDISLSLDPG--EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFP 93 (359)
T ss_dssp TEEEEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCT
T ss_pred CEEEEEeeEEEEcCC--CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCC
Confidence 345678899999999 99999999999999999999999877666432211110000 000000123445566665544
Q ss_pred CCCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHH
Q 030624 83 FSAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQE 121 (174)
Q Consensus 83 ~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~ 121 (174)
..+..+.+ .++-...++..+.+++++|+- ..++.++..
T Consensus 94 ~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLD-EPts~LD~~ 172 (359)
T 3fvq_A 94 HLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLD-EPFSALDEQ 172 (359)
T ss_dssp TSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-STTTTSCHH
T ss_pred CCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe-CCcccCCHH
Confidence 32211111 233334445556778866553 344478887
Q ss_pred HHHHH-HHHHHHHhhhhcCcEEEEEeC
Q 030624 122 EEAAL-HSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 122 ~~~~l-~~l~~~~~~~~~~~~~iv~tk 147 (174)
.+..+ +.+.+...+. ..++|++||
T Consensus 173 ~r~~l~~~l~~~~~~~--g~tvi~vTH 197 (359)
T 3fvq_A 173 LRRQIREDMIAALRAN--GKSAVFVSH 197 (359)
T ss_dssp HHHHHHHHHHHHHHHT--TCEEEEECC
T ss_pred HHHHHHHHHHHHHHhC--CCEEEEEeC
Confidence 75554 4566554332 467888888
No 195
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=99.27 E-value=8.2e-12 Score=95.55 Aligned_cols=136 Identities=18% Similarity=0.118 Sum_probs=80.2
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
+..+.++++|+.+.+ ..++++|+||||||||++.|+|...+..|........... ....+....++.+.|.+.+.
T Consensus 15 ~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~---~~~~~r~ig~VfQ~~~l~p~ 89 (381)
T 3rlf_A 15 EVVVSKDINLDIHEG--EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMND---TPPAERGVGMVFQSYALYPH 89 (381)
T ss_dssp TEEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTT---CCGGGSCEEEECTTCCCCTT
T ss_pred CEEEEeeeEEEECCC--CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCC---CCHHHCCEEEEecCCcCCCC
Confidence 344678899999999 9999999999999999999999987766632221110000 00001234566677766654
Q ss_pred CCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH
Q 030624 84 SAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE 122 (174)
Q Consensus 84 ~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~ 122 (174)
.+..+.+ .++....++....+++++|+ ...+..++...
T Consensus 90 ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLL-DEPts~LD~~~ 168 (381)
T 3rlf_A 90 LSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLL-DEPLSNLDAAL 168 (381)
T ss_dssp SCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEE-ESTTTTSCHHH
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEE-ECCCcCCCHHH
Confidence 3322211 22223333333556775554 33444788776
Q ss_pred H-HHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 123 E-AALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 123 ~-~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
+ .+.+.|++...+. ..++|++||
T Consensus 169 ~~~l~~~l~~l~~~~--g~tii~vTH 192 (381)
T 3rlf_A 169 RVQMRIEISRLHKRL--GRTMIYVTH 192 (381)
T ss_dssp HHHHHHHHHHHHHHH--CCEEEEECS
T ss_pred HHHHHHHHHHHHHhC--CCEEEEEEC
Confidence 4 4455555553332 367888888
No 196
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=99.27 E-value=2.1e-12 Score=94.78 Aligned_cols=44 Identities=25% Similarity=0.282 Sum_probs=38.7
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+..+.++++++.+.| ..++++|+||||||||++.|+|...+..|
T Consensus 23 ~~~vL~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 66 (266)
T 4g1u_C 23 QQALINDVSLHIASG--EMVAIIGPNGAGKSTLLRLLTGYLSPSHG 66 (266)
T ss_dssp TEEEEEEEEEEEETT--CEEEEECCTTSCHHHHHHHHTSSSCCSSC
T ss_pred CeeEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 345678899999999 99999999999999999999998877665
No 197
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.26 E-value=7e-12 Score=91.44 Aligned_cols=44 Identities=20% Similarity=0.127 Sum_probs=38.5
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++|+++.| ..++++|+||||||||++.|+|...+..|.
T Consensus 28 ~~vl~~vsl~i~~G--ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~ 71 (256)
T 1vpl_A 28 KEILKGISFEIEEG--EIFGLIGPNGAGKTTTLRIISTLIKPSSGI 71 (256)
T ss_dssp EEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEEEeeEEEEcCC--cEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 34678889999999 999999999999999999999998776653
No 198
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.26 E-value=3.1e-12 Score=93.33 Aligned_cols=49 Identities=18% Similarity=0.152 Sum_probs=32.8
Q ss_pred CceEEEEEEeCCCC--CCHHH-HHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 104 GIHAVLVVFSVRSR--FSQEE-EAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 104 ~~~~il~v~~~~~~--~~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
++|++++|+|.+++ .+... ..++..+...... ...|+++|.||+|+...
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~-~~~piilV~NK~Dl~~~ 213 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAK-TKKPIVVVLTKCDEGVE 213 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHH-TTCCEEEEEECGGGBCH
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhcc-CCCCEEEEEEccccccc
Confidence 58999999999855 44443 4556555554221 22699999999998653
No 199
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=99.25 E-value=1e-11 Score=94.50 Aligned_cols=135 Identities=13% Similarity=0.083 Sum_probs=82.1
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEE---EEeCCcEEEEEeCCCCCCC
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRT---VLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~~~~~~iDtpG~~~~ 83 (174)
+.++++|+.+.| ..++++|+||||||||++.|+|...+..|............... .. +....++.+.|.+...
T Consensus 43 aL~~vsl~i~~G--ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~-r~~Ig~v~Q~~~l~~~ 119 (366)
T 3tui_C 43 ALNNVSLHVPAG--QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKA-RRQIGMIFQHFNLLSS 119 (366)
T ss_dssp EEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHH-HTTEEEECSSCCCCTT
T ss_pred EEEeeEEEEcCC--CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHH-hCcEEEEeCCCccCCC
Confidence 578899999999 99999999999999999999999877665322111100000000 00 1234566677766654
Q ss_pred CCChHHH-----------------------------------------HHHHHHHHHhccCCceEEEEEEeCCCCCCHHH
Q 030624 84 SAGSEFV-----------------------------------------GKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEE 122 (174)
Q Consensus 84 ~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~ 122 (174)
.+..+.+ .++....++..+.++++++ +..+++.+++..
T Consensus 120 ~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLL-lDEPTs~LD~~~ 198 (366)
T 3tui_C 120 RTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLL-CDQATSALDPAT 198 (366)
T ss_dssp SCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEE-EESTTTTSCHHH
T ss_pred CCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEE-EECCCccCCHHH
Confidence 3322211 2333344444466777554 455555888887
Q ss_pred -HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 123 -EAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 123 -~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
..+++.|++...+. ..+++++||
T Consensus 199 ~~~i~~lL~~l~~~~--g~Tii~vTH 222 (366)
T 3tui_C 199 TRSILELLKDINRRL--GLTILLITH 222 (366)
T ss_dssp HHHHHHHHHHHHHHS--CCEEEEEES
T ss_pred HHHHHHHHHHHHHhC--CCEEEEEec
Confidence 55666666654332 367888888
No 200
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=99.24 E-value=1.8e-13 Score=104.78 Aligned_cols=123 Identities=19% Similarity=0.215 Sum_probs=69.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccc----c-ccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFK----S-RASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~----~-~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
.+++++|.+|+|||||+|+|++..... . .....+.|.... .... ...+.++||||+.+.....+.+..+..
T Consensus 161 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l 236 (368)
T 3h2y_A 161 KDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI--DIPL--DEESSLYDTPGIINHHQMAHYVGKQSL 236 (368)
T ss_dssp SCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE--EEES--SSSCEEEECCCBCCTTSGGGGSCHHHH
T ss_pred ceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceE--EEEe--cCCeEEEeCCCcCcHHHHHHHhhHHHH
Confidence 689999999999999999999863211 1 111223333222 2222 334889999999875432332333333
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
..+. ....++.++|+++....+.......++.+.. . ..|+++++||+|....
T Consensus 237 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~---~--~~~~~~v~nk~d~~~~ 288 (368)
T 3h2y_A 237 KLIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSG---G--RRAFTCHFSNRLTIHR 288 (368)
T ss_dssp HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES---S--SEEEEEEECTTSCEEE
T ss_pred HHhc-cccccCceEEEEcCCCEEEEcceEEEEEecC---C--CceEEEEecCcccccc
Confidence 2221 2456788888888742211111111222221 1 2589999999999865
No 201
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=99.24 E-value=6.3e-12 Score=90.64 Aligned_cols=42 Identities=21% Similarity=0.148 Sum_probs=37.9
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+.++++++++.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 20 ~L~~isl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~ 61 (235)
T 3tif_A 20 ALKNVNLNIKEG--EFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61 (235)
T ss_dssp EEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred eEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCceE
Confidence 678899999999 999999999999999999999988776653
No 202
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=99.24 E-value=2.1e-11 Score=92.61 Aligned_cols=45 Identities=20% Similarity=0.204 Sum_probs=39.3
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+..+.++++|+.+.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 27 ~~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 71 (355)
T 1z47_A 27 GARSVRGVSFQIREG--EMVGLLGPSGSGKTTILRLIAGLERPTKGD 71 (355)
T ss_dssp STTCEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred CCEEEeeeEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCccE
Confidence 345778899999998 999999999999999999999998776653
No 203
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=99.23 E-value=9.2e-14 Score=106.49 Aligned_cols=133 Identities=20% Similarity=0.200 Sum_probs=75.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC-----cccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR-----RAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~-----~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~ 95 (174)
.+++++|.+|+|||||+|+|++. .....+ ...+.|..... ... +..+.++||||+.......+.+..+..
T Consensus 163 ~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~-~~~gtT~~~~~--~~~--~~~~~liDtPG~~~~~~~~~~l~~~~l 237 (369)
T 3ec1_A 163 GDVYVVGCTNVGKSTFINRIIEEATGKGNVITTS-YFPGTTLDMIE--IPL--ESGATLYDTPGIINHHQMAHFVDARDL 237 (369)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEE-ECTTSSCEEEE--EEC--STTCEEEECCSCCCCSSGGGGSCTTTH
T ss_pred CcEEEEcCCCCchHHHHHHHHhhccCCccceeec-CCCCeEEeeEE--EEe--CCCeEEEeCCCcCcHHHHHHHHhHHHH
Confidence 57999999999999999999986 222122 22333433222 222 344799999999875432332322233
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCCCh-hhHHHHhcc
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDND-ETLEDYLGR 164 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~~~-~~~~~~~~~ 164 (174)
..+. ...++|.++|+++....+.......++.+.. . ..++++++||+|...... ....+++++
T Consensus 238 ~~~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~---~--~~~~~~v~~k~d~~~~~~~~~~~~~~~~ 301 (369)
T 3ec1_A 238 KIIT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKG---G--RRSFVCYMANELTVHRTKLEKADSLYAN 301 (369)
T ss_dssp HHHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEES---S--SEEEEEEECTTSCEEEEEGGGHHHHHHH
T ss_pred HHHh-cccccCceEEEEcCCceEEECCEEEEEEccC---C--CceEEEEecCCcccccccHHHHHHHHHH
Confidence 2221 1356799999998842211111111222221 1 258999999999975422 233444443
No 204
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=99.23 E-value=2.9e-11 Score=92.04 Aligned_cols=43 Identities=23% Similarity=0.201 Sum_probs=38.1
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 17 ~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 59 (359)
T 2yyz_A 17 KAVDGVSFEVKDG--EFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59 (359)
T ss_dssp EEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEEeeeEEEEcCC--CEEEEEcCCCchHHHHHHHHHCCCCCCccE
Confidence 4678899999998 999999999999999999999998776653
No 205
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=99.23 E-value=8.1e-12 Score=95.09 Aligned_cols=90 Identities=17% Similarity=0.087 Sum_probs=54.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC----------------CcEEEEEeCCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDFS 84 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~iDtpG~~~~~ 84 (174)
.+++++|.+|+|||||+|+|++.... .. ..+..|.......+.+.. ...+.++||||+.++.
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~-v~-~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a 80 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIE-AA-NYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA 80 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCc-cc-CCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence 68999999999999999999986521 11 112233333332333311 1468999999998742
Q ss_pred CChHHHHHHHHHHHHhccCCceEEEEEEeCCC
Q 030624 85 AGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 116 (174)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~ 116 (174)
...+.+...+... ++++|++++|+|+++
T Consensus 81 ~~~~gl~~~fl~~----ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 81 SKGEGLGNKFLAN----IRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHGGGTCCHHHH----HHTCSEEEEEEECSC
T ss_pred cccchHHHHHHHH----HHhcCeEEEEEecCC
Confidence 1111122223322 456799999999974
No 206
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=99.22 E-value=4.7e-11 Score=91.39 Aligned_cols=43 Identities=21% Similarity=0.264 Sum_probs=38.2
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 17 ~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 59 (372)
T 1g29_1 17 TAVREMSLEVKDG--EFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59 (372)
T ss_dssp EEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEEeeeEEEEcCC--CEEEEECCCCcHHHHHHHHHHcCCCCCccE
Confidence 4677889999998 999999999999999999999998776664
No 207
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=99.22 E-value=5.8e-11 Score=84.96 Aligned_cols=43 Identities=21% Similarity=0.139 Sum_probs=37.9
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++|+++.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 18 ~~l~~vsl~i~~G--e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~ 60 (224)
T 2pcj_A 18 EILKGISLSVKKG--EFVSIIGASGSGKSTLLYILGLLDAPTEGK 60 (224)
T ss_dssp EEEEEEEEEEETT--CEEEEEECTTSCHHHHHHHHTTSSCCSEEE
T ss_pred eeEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceE
Confidence 4678889999999 999999999999999999999988766653
No 208
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=99.21 E-value=3.3e-11 Score=91.83 Aligned_cols=44 Identities=23% Similarity=0.217 Sum_probs=38.7
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++++.+.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 16 ~~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 59 (362)
T 2it1_A 16 FTALNNINLKIKDG--EFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59 (362)
T ss_dssp SEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEEEEeeEEEECCC--CEEEEECCCCchHHHHHHHHhcCCCCCceE
Confidence 34678899999998 999999999999999999999998776653
No 209
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.21 E-value=3e-11 Score=93.48 Aligned_cols=117 Identities=21% Similarity=0.201 Sum_probs=69.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceee-EEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh
Q 030624 22 TVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTC-EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM 100 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~ 100 (174)
.++++|+||||||||+|+|+|...+..|......+... ............+.++|+||+...... ..++.+.+.
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~~~----~~~~L~~~~- 145 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFP----PDTYLEKMK- 145 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCC----HHHHHHHTT-
T ss_pred EEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchHHH----HHHHHHHcC-
Confidence 89999999999999999999987766664433221110 111111111235789999998643211 222333222
Q ss_pred ccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCC
Q 030624 101 AKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDEL 151 (174)
Q Consensus 101 ~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~ 151 (174)
....+..++ ++.. +.......+...+... . +|+++|.||.|..
T Consensus 146 -L~~~~~~~~-lS~G-~~~kqrv~la~aL~~~---~--~p~~lV~tkpdll 188 (413)
T 1tq4_A 146 -FYEYDFFII-ISAT-RFKKNDIDIAKAISMM---K--KEFYFVRTKVDSD 188 (413)
T ss_dssp -GGGCSEEEE-EESS-CCCHHHHHHHHHHHHT---T--CEEEEEECCHHHH
T ss_pred -CCccCCeEE-eCCC-CccHHHHHHHHHHHhc---C--CCeEEEEecCccc
Confidence 223355554 6666 3455555555555443 2 6899999999875
No 210
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=99.20 E-value=2.3e-11 Score=93.44 Aligned_cols=90 Identities=18% Similarity=0.182 Sum_probs=47.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeC----------------CcEEEEEeCCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD----------------GQVVNVIDTPGLFDF 83 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~----------------~~~~~~iDtpG~~~~ 83 (174)
..+++++|.+|+|||||+|+|++... ... ..+..|.......+.+.. ...+.++||||+..+
T Consensus 22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~-~~~-~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~ 99 (396)
T 2ohf_A 22 SLKIGIVGLPNVGKSTFFNVLTNSQA-SAE-NFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG 99 (396)
T ss_dssp CCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCc-ccc-CCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence 38899999999999999999999753 111 223333333333333311 234899999999875
Q ss_pred CCChHHHHHHHHHHHHhccCCceEEEEEEeCC
Q 030624 84 SAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 115 (174)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 115 (174)
....+.+...+.. .+..+|++++|+|+.
T Consensus 100 as~~~glg~~~l~----~ir~aD~Il~VvD~~ 127 (396)
T 2ohf_A 100 AHNGQGLGNAFLS----HISACDGIFHLTRAF 127 (396)
T ss_dssp -------CCHHHH----HHHTSSSEEEEEEC-
T ss_pred cchhhHHHHHHHH----HHHhcCeEEEEEecC
Confidence 4332223223333 345669999999986
No 211
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.20 E-value=1.6e-11 Score=88.78 Aligned_cols=43 Identities=26% Similarity=0.356 Sum_probs=37.8
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 20 ~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~ 62 (240)
T 1ji0_A 20 HAIKGIDLKVPRG--QIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62 (240)
T ss_dssp EEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCce
Confidence 3677889999998 999999999999999999999988776653
No 212
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=99.20 E-value=3.7e-11 Score=91.36 Aligned_cols=42 Identities=17% Similarity=0.211 Sum_probs=37.8
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+.++++++.+.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 20 vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 61 (353)
T 1oxx_K 20 ALDNVNINIENG--ERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61 (353)
T ss_dssp EEEEEEEEECTT--CEEEEECSCHHHHHHHHHHHHTSSCCSEEE
T ss_pred eEeceEEEECCC--CEEEEECCCCCcHHHHHHHHhCCCCCCceE
Confidence 667899999998 999999999999999999999998776664
No 213
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=99.19 E-value=1.1e-10 Score=85.02 Aligned_cols=43 Identities=16% Similarity=0.217 Sum_probs=37.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++.+.+ ..++++|+||||||||++.|+|...+..|
T Consensus 18 ~~vl~~isl~i~~G--e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G 60 (253)
T 2nq2_C 18 NFLFQQLNFDLNKG--DILAVLGQNGCGKSTLLDLLLGIHRPIQG 60 (253)
T ss_dssp TEEEEEEEEEEETT--CEEEEECCSSSSHHHHHHHHTTSSCCSEE
T ss_pred CeEEEEEEEEECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCc
Confidence 34678889999998 99999999999999999999998876555
No 214
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=99.19 E-value=2e-11 Score=89.35 Aligned_cols=44 Identities=18% Similarity=0.224 Sum_probs=38.5
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++|+++.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 37 ~~vL~~vsl~i~~G--ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~ 80 (263)
T 2olj_A 37 LEVLKGINVHIREG--EVVVVIGPSGSGKSTFLRCLNLLEDFDEGE 80 (263)
T ss_dssp EEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEEEeeEEEEcCC--CEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Confidence 34678899999999 999999999999999999999998776653
No 215
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=99.19 E-value=1.3e-11 Score=90.95 Aligned_cols=42 Identities=17% Similarity=0.128 Sum_probs=37.9
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+.++++++++.| ..++++|+||||||||++.|+|...+..|.
T Consensus 23 ~L~~isl~i~~G--e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~ 64 (275)
T 3gfo_A 23 ALKGINMNIKRG--EVTAILGGNGVGKSTLFQNFNGILKPSSGR 64 (275)
T ss_dssp EEEEEEEEEETT--SEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHHcCCCCCCeE
Confidence 788999999999 999999999999999999999988766653
No 216
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=99.18 E-value=4.1e-11 Score=91.65 Aligned_cols=43 Identities=26% Similarity=0.292 Sum_probs=38.1
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 25 ~vl~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 67 (372)
T 1v43_A 25 TAVNKLNLTIKDG--EFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67 (372)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEEeeeEEEECCC--CEEEEECCCCChHHHHHHHHHcCCCCCceE
Confidence 4577889999998 999999999999999999999998776663
No 217
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.18 E-value=3.8e-12 Score=96.40 Aligned_cols=35 Identities=23% Similarity=0.145 Sum_probs=29.5
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
+.++++++...+ ..++++|++|||||||+|.|++.
T Consensus 44 ~l~~i~~~~~~g--~~v~i~G~~GaGKSTLl~~l~g~ 78 (337)
T 2qm8_A 44 LIDAVLPQTGRA--IRVGITGVPGVGKSTTIDALGSL 78 (337)
T ss_dssp HHHHHGGGCCCS--EEEEEECCTTSCHHHHHHHHHHH
T ss_pred HHHhCCcccCCC--eEEEEECCCCCCHHHHHHHHHHh
Confidence 345667777777 99999999999999999999854
No 218
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=99.17 E-value=5.8e-10 Score=88.34 Aligned_cols=123 Identities=15% Similarity=0.168 Sum_probs=70.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh------CCcccccccCCCCcce-----------eeEEEEE--------------E-
Q 030624 18 NGERTVVLVGRTGNGKSATGNSIL------GRRAFKSRASSSGVTS-----------TCEMQRT--------------V- 65 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~------~~~~~~~~~~~~~~t~-----------~~~~~~~--------------~- 65 (174)
.+..+|+++|++|+||||+++.|+ |....-.......... ...+... .
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~ 178 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK 178 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence 345789999999999999999998 5432111110000000 0000010 0
Q ss_pred E-eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCc-EEE
Q 030624 66 L-KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDY-MIV 143 (174)
Q Consensus 66 ~-~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-~~i 143 (174)
+ ..+..+.+|||||.... ......++...... ..+|.+++|+|+....+ .....+.+.+. .+ ..+
T Consensus 179 ~~~~~~DvvIIDTpG~~~~---~~~l~~el~~~~~~--i~pd~vllVvDa~~g~~--~~~~a~~~~~~------~~i~gv 245 (504)
T 2j37_W 179 FKNENFEIIIVDTSGRHKQ---EDSLFEEMLQVANA--IQPDNIVYVMDASIGQA--CEAQAKAFKDK------VDVASV 245 (504)
T ss_dssp HHHTTCCEEEEEECCCCTT---CHHHHHHHHHHHHH--HCCSEEEEEEETTCCTT--HHHHHHHHHHH------HCCCCE
T ss_pred HHHCCCcEEEEeCCCCccc---chhHHHHHHHHHhh--hcCceEEEEEecccccc--HHHHHHHHHhh------cCceEE
Confidence 0 04557899999998852 23344445444332 26799999999975543 23333333332 25 488
Q ss_pred EEeCcCCCCC
Q 030624 144 VFTGGDELED 153 (174)
Q Consensus 144 v~tk~D~~~~ 153 (174)
|+||+|....
T Consensus 246 VlNK~D~~~~ 255 (504)
T 2j37_W 246 IVTKLDGHAK 255 (504)
T ss_dssp EEECTTSCCC
T ss_pred EEeCCccccc
Confidence 9999998754
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.17 E-value=6.9e-11 Score=90.93 Aligned_cols=90 Identities=17% Similarity=0.112 Sum_probs=59.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCC-----------------cEEEEEeCCCCCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDG-----------------QVVNVIDTPGLFD 82 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----------------~~~~~iDtpG~~~ 82 (174)
..+++++|++|||||||+|+|++....... ..+..|.......+.+ .+ ..+.++|+||+..
T Consensus 20 g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~-~~p~tTi~p~~G~v~v-~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~ 97 (392)
T 1ni3_A 20 NLKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPEEAKVAV-PDERFDWLCEAYKPKSRVPAFLTVFDIAGLTK 97 (392)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTTEEEEEE-CCHHHHHHHHHHCCSEEECEEEEEECTGGGCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCccccc-CCCceeecceeeeeee-CCcchhhhhhhcccccccCcceEEEecccccc
Confidence 489999999999999999999996531222 1223333333333333 22 3578999999987
Q ss_pred CCCChHHHHHHHHHHHHhccCCceEEEEEEeCC
Q 030624 83 FSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR 115 (174)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~ 115 (174)
+....+.+...+... +..+|.+++++++.
T Consensus 98 ~~s~~e~L~~~fl~~----ir~~d~il~Vvd~~ 126 (392)
T 1ni3_A 98 GASTGVGLGNAFLSH----VRAVDAIYQVVRAF 126 (392)
T ss_dssp CCCSSSSSCHHHHHH----HTTCSEEEEEEECC
T ss_pred CCcHHHHHHHHHHHH----HHHHHHHHHHHhcc
Confidence 655444343344433 34679999999985
No 220
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=99.17 E-value=5.4e-11 Score=90.90 Aligned_cols=90 Identities=21% Similarity=0.187 Sum_probs=57.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEe--------------------CCcEEEEEeCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLK--------------------DGQVVNVIDTPGL 80 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~--------------------~~~~~~~iDtpG~ 80 (174)
.+++++|.+|+|||||+|+|++.... .. ..+..|...+.....+. ....+.++||||+
T Consensus 2 ~~v~IVG~pnvGKSTL~n~L~~~~~~-v~-~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl 79 (368)
T 2dby_A 2 LAVGIVGLPNVGKSTLFNALTRANAL-AA-NYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL 79 (368)
T ss_dssp CSEEEECCSSSSHHHHHHHHHHHHTT-CS-SCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCCc-cc-CCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence 57899999999999999999986421 11 11222332222222221 2346899999999
Q ss_pred CCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCC
Q 030624 81 FDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS 116 (174)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~ 116 (174)
.++....+.+...+...+ ..+|++++|+|+.+
T Consensus 80 ~~~a~~~~~lg~~fl~~i----r~ad~ii~VvD~~~ 111 (368)
T 2dby_A 80 VKGAHKGEGLGNQFLAHI----REVAAIAHVLRCFP 111 (368)
T ss_dssp CCCCCSSSCTTHHHHHHH----HTCSEEEEEEECCC
T ss_pred cccccccchHHHHHHHHH----HhCCEEEEEEECCC
Confidence 876543333444444444 45699999999974
No 221
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=99.16 E-value=6.4e-11 Score=89.83 Aligned_cols=33 Identities=18% Similarity=0.062 Sum_probs=26.1
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.++++....+ .+++++|++|+|||||+|.|++.
T Consensus 47 ~~l~~~~~~~--~~i~i~G~~g~GKSTl~~~l~~~ 79 (341)
T 2p67_A 47 DAIMPYCGNT--LRLGVTGTPGAGKSTFLEAFGML 79 (341)
T ss_dssp HHHGGGCSCS--EEEEEEECTTSCHHHHHHHHHHH
T ss_pred HhCCcccCCC--EEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445555544 89999999999999999999753
No 222
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=99.15 E-value=8.3e-11 Score=83.56 Aligned_cols=43 Identities=16% Similarity=0.103 Sum_probs=37.9
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++++.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 23 ~il~~vsl~i~~G--e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 65 (214)
T 1sgw_A 23 PVLERITMTIEKG--NVVNFHGPNGIGKTTLLKTISTYLKPLKGE 65 (214)
T ss_dssp EEEEEEEEEEETT--CCEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred eEEeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCeE
Confidence 4678889999998 999999999999999999999988766653
No 223
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=99.14 E-value=5.8e-11 Score=90.08 Aligned_cols=42 Identities=29% Similarity=0.267 Sum_probs=38.0
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+.++++++.+.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 15 ~l~~vsl~i~~G--e~~~llGpnGsGKSTLLr~iaGl~~p~~G~ 56 (348)
T 3d31_A 15 SLDNLSLKVESG--EYFVILGPTGAGKTLFLELIAGFHVPDSGR 56 (348)
T ss_dssp EEEEEEEEECTT--CEEEEECCCTHHHHHHHHHHHTSSCCSEEE
T ss_pred EEeeeEEEEcCC--CEEEEECCCCccHHHHHHHHHcCCCCCCcE
Confidence 778899999999 999999999999999999999998776653
No 224
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=99.13 E-value=1.8e-11 Score=91.35 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=38.0
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++|+++.+ .+++|+|+||||||||++.|+|...+..|.
T Consensus 68 ~vL~~isl~i~~G--e~vaivG~sGsGKSTLl~ll~gl~~p~~G~ 110 (306)
T 3nh6_A 68 ETLQDVSFTVMPG--QTLALVGPSGAGKSTILRLLFRFYDISSGC 110 (306)
T ss_dssp EEEEEEEEEECTT--CEEEEESSSCHHHHHHHHHHTTSSCCSEEE
T ss_pred ceeeeeeEEEcCC--CEEEEECCCCchHHHHHHHHHcCCCCCCcE
Confidence 4678899999999 999999999999999999999988766653
No 225
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=99.11 E-value=6.5e-11 Score=87.04 Aligned_cols=44 Identities=18% Similarity=0.195 Sum_probs=38.8
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++|+++.+ ..++|+|+||||||||++.|+|...+..|.
T Consensus 32 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~ 75 (271)
T 2ixe_A 32 VQVLQGLTFTLYPG--KVTALVGPNGSGKSTVAALLQNLYQPTGGK 75 (271)
T ss_dssp SCCEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred ceeeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence 34788899999999 999999999999999999999998776653
No 226
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=99.10 E-value=4.9e-11 Score=86.58 Aligned_cols=44 Identities=25% Similarity=0.293 Sum_probs=38.7
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++++++.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 22 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 65 (247)
T 2ff7_A 22 PVILDNINLSIKQG--EVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 65 (247)
T ss_dssp CEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred cceeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 34788899999999 999999999999999999999998766653
No 227
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=99.10 E-value=4.5e-11 Score=86.56 Aligned_cols=44 Identities=18% Similarity=0.186 Sum_probs=39.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++++++.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 15 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 58 (243)
T 1mv5_A 15 EQILRDISFEAQPN--SIIAFAGPSGGGKSTIFSLLERFYQPTAGE 58 (243)
T ss_dssp SCSEEEEEEEECTT--EEEEEECCTTSSHHHHHHHHTTSSCCSBSC
T ss_pred CceEEEeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 45788899999999 999999999999999999999998776653
No 228
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=99.09 E-value=3.1e-10 Score=81.47 Aligned_cols=43 Identities=19% Similarity=0.270 Sum_probs=38.0
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.+ ..++++|+||||||||++.|+|...+..|
T Consensus 21 ~~il~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 63 (229)
T 2pze_A 21 TPVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEG 63 (229)
T ss_dssp CCSEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEE
T ss_pred ceeeeeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCcCCcc
Confidence 45788899999998 99999999999999999999998876554
No 229
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=99.09 E-value=1.2e-10 Score=88.57 Aligned_cols=24 Identities=29% Similarity=0.148 Sum_probs=22.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..+++|+|++|||||||+|.|++.
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~ 97 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKM 97 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 489999999999999999999974
No 230
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=99.06 E-value=3e-10 Score=83.13 Aligned_cols=44 Identities=18% Similarity=0.182 Sum_probs=38.7
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++|+++.| ..++++|+||||||||++.|+|...+..|.
T Consensus 19 ~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~ 62 (262)
T 1b0u_A 19 HEVLKGVSLQARAG--DVISIIGSSGSGKSTFLRCINFLEKPSEGA 62 (262)
T ss_dssp EEEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCcE
Confidence 34678899999999 999999999999999999999998776653
No 231
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=99.05 E-value=4.7e-11 Score=86.73 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=36.3
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+.++++++.+.+ ..++++|+||||||||++.|+|...+. |.
T Consensus 15 vl~~vsl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~ 55 (249)
T 2qi9_C 15 RLGPLSGEVRAG--EILHLVGPNGAGKSTLLARMAGMTSGK-GS 55 (249)
T ss_dssp TEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCE-EE
T ss_pred EEeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCC-eE
Confidence 567888999988 999999999999999999999988765 53
No 232
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=99.04 E-value=3.9e-10 Score=85.94 Aligned_cols=25 Identities=24% Similarity=0.252 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
+...+|+++|++|+|||||++.|+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~ 101 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGM 101 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHH
Confidence 3458999999999999999999864
No 233
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=99.04 E-value=1.8e-10 Score=83.27 Aligned_cols=41 Identities=24% Similarity=0.194 Sum_probs=33.4
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+.++++++.+. ..++++|+||||||||++.|+|...+..|.
T Consensus 14 ~l~~isl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 54 (240)
T 2onk_A 14 FRLNVDFEMGR---DYCVLLGPTGAGKSVFLELIAGIVKPDRGE 54 (240)
T ss_dssp EEEEEEEEECS---SEEEEECCTTSSHHHHHHHHHTSSCCSEEE
T ss_pred EEeeeEEEECC---EEEEEECCCCCCHHHHHHHHhCCCCCCceE
Confidence 35667777665 588999999999999999999998766653
No 234
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=99.04 E-value=7e-10 Score=89.32 Aligned_cols=109 Identities=21% Similarity=0.196 Sum_probs=61.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCCcceeeEEEEEE--EeCCcEEEEEeCCCCCCCCC-ChHHHHHH
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSGVTSTCEMQRTV--LKDGQVVNVIDTPGLFDFSA-GSEFVGKE 93 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~-~~~~~~~~~~t~~~~~~~~~--~~~~~~~~~iDtpG~~~~~~-~~~~~~~~ 93 (174)
.+..+|+|+|.+|+|||||+|.|+|... +..+....+.|......... ...+..+.++||||+.+... ..... ..
T Consensus 36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~-~~ 114 (592)
T 1f5n_A 36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQND-SW 114 (592)
T ss_dssp SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTH-HH
T ss_pred CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHH-HH
Confidence 3457899999999999999999999763 22222222233222111111 11456899999999987432 11111 11
Q ss_pred HHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHH
Q 030624 94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTL 132 (174)
Q Consensus 94 ~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~ 132 (174)
+....... .+ ++++++...++..+...+..+.+.
T Consensus 115 ~fala~ll---ss--~lv~n~~~~i~~~dl~~l~~v~e~ 148 (592)
T 1f5n_A 115 IFALAVLL---SS--TFVYNSIGTINQQAMDQLYYVTEL 148 (592)
T ss_dssp HHHHHHHH---CS--EEEEEEESCSSHHHHHTTHHHHTH
T ss_pred HHHHHHHh---cC--eEEEECCCCccHHHHHHHHHHHHH
Confidence 21111111 12 345565557888877666655544
No 235
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=99.02 E-value=1.2e-10 Score=84.94 Aligned_cols=44 Identities=20% Similarity=0.216 Sum_probs=38.6
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++++++.| ..++++|+||||||||++.|+|...+..|.
T Consensus 20 ~~vl~~vsl~i~~G--e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~ 63 (257)
T 1g6h_A 20 FKALDGVSISVNKG--DVTLIIGPNGSGKSTLINVITGFLKADEGR 63 (257)
T ss_dssp EEEEEEECCEEETT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EeeEeeeEEEEeCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 34678899999999 999999999999999999999998776653
No 236
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.02 E-value=7.6e-10 Score=87.08 Aligned_cols=142 Identities=14% Similarity=0.146 Sum_probs=79.6
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC--Cccee------------eEEEEEEE-------
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS--GVTST------------CEMQRTVL------- 66 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~--~~t~~------------~~~~~~~~------- 66 (174)
..+++++...+ ..++|+|+||||||||++.|++...+..|.... ..+.. .....+..
T Consensus 283 ~~~Isl~i~~G--eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p 360 (503)
T 2yhs_A 283 DEPLNVEGKAP--FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADS 360 (503)
T ss_dssp BCCCCCCSCTT--EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCH
T ss_pred CCCceeeccCC--eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCH
Confidence 45667776666 999999999999999999998765443332111 00000 00000100
Q ss_pred ------------eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHH---Hhc-cCCceEEEEEEeCCCCCCHHHHHHHHHHH
Q 030624 67 ------------KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI---GMA-KDGIHAVLVVFSVRSRFSQEEEAALHSLQ 130 (174)
Q Consensus 67 ------------~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~---~~~-~~~~~~il~v~~~~~~~~~~~~~~l~~l~ 130 (174)
..+..+.++||+|.... ...++.++.+.. +.. ...++-+++++|++.+ ......++.+.
T Consensus 361 ~~tV~e~l~~a~~~~~DvVLIDTaGrl~~---~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattG--q~al~~ak~f~ 435 (503)
T 2yhs_A 361 ASVIFDAIQAAKARNIDVLIADTAGRLQN---KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG--QNAVSQAKLFH 435 (503)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCSCCC---HHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccch---hhhHHHHHHHHHHHHHHhccCCCCeeEEEecCccc--HHHHHHHHHHH
Confidence 12234789999998753 234444443332 322 2346788889987633 22233333343
Q ss_pred HHHhhhhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624 131 TLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 162 (174)
Q Consensus 131 ~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~ 162 (174)
+.. ....+++||.|....- ..+..+.
T Consensus 436 ~~~-----~itgvIlTKLD~takg-G~~lsi~ 461 (503)
T 2yhs_A 436 EAV-----GLTGITLTKLDGTAKG-GVIFSVA 461 (503)
T ss_dssp HHT-----CCSEEEEECGGGCSCC-THHHHHH
T ss_pred hhc-----CCCEEEEEcCCCcccc-cHHHHHH
Confidence 332 3567889999975432 3444443
No 237
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=99.02 E-value=1.7e-09 Score=78.67 Aligned_cols=77 Identities=14% Similarity=0.015 Sum_probs=42.6
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHH-HHHHHHHHHhhhhcCcEEEEEeCc
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEA-ALHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~-~l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
..+.++||||..+. .....+...+...+.. +++++++|+....+..+.. ......... .....|+++|+||+
T Consensus 109 ~d~iiiDtpG~~~~-----~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~iv~NK~ 181 (262)
T 1yrb_A 109 NDYVLIDTPGQMET-----FLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLID-LRLGATTIPALNKV 181 (262)
T ss_dssp CSEEEEECCSSHHH-----HHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHH-HHHTSCEEEEECCG
T ss_pred CCEEEEeCCCccch-----hhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHh-cccCCCeEEEEecc
Confidence 36899999998741 1111111112223355 8999999886444544422 111111111 11226899999999
Q ss_pred CCCCC
Q 030624 149 DELED 153 (174)
Q Consensus 149 D~~~~ 153 (174)
|+...
T Consensus 182 D~~~~ 186 (262)
T 1yrb_A 182 DLLSE 186 (262)
T ss_dssp GGCCH
T ss_pred ccccc
Confidence 98754
No 238
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=99.02 E-value=8.9e-11 Score=86.62 Aligned_cols=44 Identities=18% Similarity=0.152 Sum_probs=38.6
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++|+++.+ ..++++|+||||||||++.|+|...+..|.
T Consensus 34 ~~vL~~isl~i~~G--e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~ 77 (279)
T 2ihy_A 34 KTILKKISWQIAKG--DKWILYGLNGAGKTTLLNILNAYEPATSGT 77 (279)
T ss_dssp EEEEEEEEEEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSEEE
T ss_pred EEEEEeeeEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCeE
Confidence 34678899999999 999999999999999999999998776653
No 239
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.01 E-value=1.2e-09 Score=81.43 Aligned_cols=133 Identities=14% Similarity=0.163 Sum_probs=74.8
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCc-------ce----eeEEE--EEE-E--
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGV-------TS----TCEMQ--RTV-L-- 66 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~------~~~~-------t~----~~~~~--~~~-~-- 66 (174)
..++++.+.+ ..++++|+||||||||++.|++...+..+.. .... .. ...+. ... .
T Consensus 91 ~~l~~~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~ 168 (302)
T 3b9q_A 91 TELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA 168 (302)
T ss_dssp CSCCCCSSSC--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH
T ss_pred cccccccCCC--cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH
Confidence 3455655555 8999999999999999999988654433311 1000 00 00110 000 0
Q ss_pred ------------eCCcEEEEEeCCCCCCCCCChHHHHHH----HHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHH
Q 030624 67 ------------KDGQVVNVIDTPGLFDFSAGSEFVGKE----IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQ 130 (174)
Q Consensus 67 ------------~~~~~~~~iDtpG~~~~~~~~~~~~~~----~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~ 130 (174)
.......++||.|..... +....+ .....+.....++-+++++|++..++.... ++.+.
T Consensus 169 ~~~v~e~l~~~~~~~~d~~lldt~gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~--~~~~~ 243 (302)
T 3b9q_A 169 ATVLSKAVKRGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFN 243 (302)
T ss_dssp HHHHHHHHHHHHHTTCSEEEECCCCCSSCC---HHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH--HHHHH
T ss_pred HHHHHHHHHHHHHcCCcchHHhcCCCCcch---hHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH--HHHHH
Confidence 011235789999987532 333333 223334455678877888887655555432 22333
Q ss_pred HHHhhhhcCcEEEEEeCcCCCCC
Q 030624 131 TLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 131 ~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+.. ...++++||.|....
T Consensus 244 ~~~-----g~t~iiiThlD~~~~ 261 (302)
T 3b9q_A 244 EVV-----GITGLILTKLDGSAR 261 (302)
T ss_dssp HHT-----CCCEEEEECCSSCSC
T ss_pred Hhc-----CCCEEEEeCCCCCCc
Confidence 221 357888999998643
No 240
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=99.00 E-value=1.2e-09 Score=80.73 Aligned_cols=63 Identities=21% Similarity=0.336 Sum_probs=40.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCCh
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS 87 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~ 87 (174)
..+++++|.+|+|||||+|+|++......+. ..+.|.... .+.. +..+.++||||+.......
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~~~~~-~~g~T~~~~--~~~~--~~~~~l~DtpG~~~~~~~~ 182 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIAKTGD-RPGITTSQQ--WVKV--GKELELLDTPGILWPKFED 182 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-------------C--CEEE--TTTEEEEECCCCCCSCCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCceeecCC-CCCeeeeeE--EEEe--CCCEEEEECcCcCCCCCCC
Confidence 4789999999999999999999977543432 233343332 2222 4578999999998765443
No 241
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=98.99 E-value=2.1e-10 Score=92.69 Aligned_cols=43 Identities=33% Similarity=0.301 Sum_probs=38.1
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| ..++++|+||||||||++.|+|...+..|.
T Consensus 355 ~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 355 PILKDINLSIEKG--ETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CSEEEEEEEECTT--CEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred cceeeeEEEECCC--CEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 4678889999999 999999999999999999999988776653
No 242
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=98.99 E-value=4.2e-10 Score=82.26 Aligned_cols=39 Identities=28% Similarity=0.305 Sum_probs=35.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 46 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~ 46 (174)
.+.++++++++.+ ..++++|+||||||||++.|+|...+
T Consensus 34 ~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~~ 72 (260)
T 2ghi_A 34 RTLKSINFFIPSG--TTCALVGHTGSGKSTIAKLLYRFYDA 72 (260)
T ss_dssp CSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCC
T ss_pred ceeEeeEEEECCC--CEEEEECCCCCCHHHHHHHHhccCCC
Confidence 4788899999999 99999999999999999999998754
No 243
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=98.99 E-value=1.4e-09 Score=87.95 Aligned_cols=44 Identities=30% Similarity=0.387 Sum_probs=38.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++++.+.| ..++++|+||||||||++.|+|...+..|.
T Consensus 356 ~~~l~~i~l~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 399 (582)
T 3b5x_A 356 KPALSHVSFSIPQG--KTVALVGRSGSGKSTIANLFTRFYDVDSGS 399 (582)
T ss_pred ccccccceEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCCE
Confidence 34788899999999 999999999999999999999988776663
No 244
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.97 E-value=3.2e-09 Score=80.82 Aligned_cols=132 Identities=14% Similarity=0.141 Sum_probs=74.9
Q ss_pred ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccCCC---Ccce--------------eeEEEEEEE------
Q 030624 10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSS---GVTS--------------TCEMQRTVL------ 66 (174)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~---~~t~--------------~~~~~~~~~------ 66 (174)
.++++.+.+ ..++++|+||||||||++.|++...+..+.... .... ...+.....
T Consensus 149 ~l~l~~~~g--~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 149 ELQLGFRKP--AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp SCCCCSSSS--EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CcceecCCC--eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 455555555 899999999999999999998865443331100 0000 000100000
Q ss_pred -----------eCCcEEEEEeCCCCCCCCCChHHHHH----HHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHH
Q 030624 67 -----------KDGQVVNVIDTPGLFDFSAGSEFVGK----EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQT 131 (174)
Q Consensus 67 -----------~~~~~~~~iDtpG~~~~~~~~~~~~~----~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~ 131 (174)
.......++||.|..... +.... +.....+.....++-+++++|++..++.... +..+.+
T Consensus 227 ~tv~e~l~~~~~~~~d~~lldt~Gl~~~~---~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~--~~~~~~ 301 (359)
T 2og2_A 227 TVLSKAVKRGKEEGYDVVLCDTSGRLHTN---YSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ--AREFNE 301 (359)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECCCCSSCC---HHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH--HHHHHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHhcCCChhh---hhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH--HHHHHH
Confidence 012235789999987532 22332 2333334456678878888887655554432 222332
Q ss_pred HHhhhhcCcEEEEEeCcCCCCC
Q 030624 132 LFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 132 ~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
.. ....+++||.|....
T Consensus 302 ~~-----g~t~iiiThlD~~~~ 318 (359)
T 2og2_A 302 VV-----GITGLILTKLDGSAR 318 (359)
T ss_dssp HT-----CCCEEEEESCTTCSC
T ss_pred hc-----CCeEEEEecCccccc
Confidence 21 357889999997644
No 245
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.97 E-value=1.4e-09 Score=79.77 Aligned_cols=43 Identities=21% Similarity=0.222 Sum_probs=38.3
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| ..++++|+||||||||++.|+|...+..|.
T Consensus 21 ~vl~~vsl~i~~G--e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~ 63 (266)
T 2yz2_A 21 KALENVSLVINEG--ECLLVAGNTGSGKSTLLQIVAGLIEPTSGD 63 (266)
T ss_dssp EEEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTSSCCSEEE
T ss_pred ceeeeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCCcE
Confidence 3678899999999 999999999999999999999998776653
No 246
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.97 E-value=4e-10 Score=91.18 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=38.2
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| ..++++|+||||||||++.|+|...+..|.
T Consensus 357 ~~l~~isl~i~~G--e~~~ivG~sGsGKSTll~~l~g~~~~~~G~ 399 (587)
T 3qf4_A 357 PVLSGVNFSVKPG--SLVAVLGETGSGKSTLMNLIPRLIDPERGR 399 (587)
T ss_dssp CSEEEEEEEECTT--CEEEEECSSSSSHHHHHHTTTTSSCCSEEE
T ss_pred cceeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCccCCCcE
Confidence 4678899999999 999999999999999999999988776653
No 247
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=98.96 E-value=5.7e-10 Score=90.49 Aligned_cols=43 Identities=23% Similarity=0.305 Sum_probs=38.4
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| ..++++|+||||||||++.|+|...+..|.
T Consensus 369 ~~l~~isl~i~~G--~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 411 (598)
T 3qf4_B 369 PVLKDITFHIKPG--QKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411 (598)
T ss_dssp CSCCSEEEECCTT--CEEEEECCTTSSTTHHHHHHTTSSCCSEEE
T ss_pred ccccceEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCcCCCCeE
Confidence 4678899999999 999999999999999999999998776653
No 248
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.94 E-value=1.2e-09 Score=79.90 Aligned_cols=41 Identities=22% Similarity=0.248 Sum_probs=36.4
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+ + ..++++|+||||||||++.|+|.. +..|.
T Consensus 19 ~il~~vsl~i~-G--e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~ 59 (263)
T 2pjz_A 19 FSLENINLEVN-G--EKVIILGPNGSGKTTLLRAISGLL-PYSGN 59 (263)
T ss_dssp EEEEEEEEEEC-S--SEEEEECCTTSSHHHHHHHHTTSS-CCEEE
T ss_pred eeEEeeeEEEC-C--EEEEEECCCCCCHHHHHHHHhCCC-CCCcE
Confidence 46788899999 8 999999999999999999999988 76653
No 249
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.93 E-value=1.9e-10 Score=83.64 Aligned_cols=43 Identities=26% Similarity=0.397 Sum_probs=36.4
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC--cccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR--RAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~--~~~~~~ 49 (174)
..+.++++|+++.+ ..++++|+||||||||++.|+|. ..+..|
T Consensus 16 ~~vl~~vsl~i~~G--e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G 60 (250)
T 2d2e_A 16 ETILKGVNLVVPKG--EVHALMGPNGAGKSTLGKILAGDPEYTVERG 60 (250)
T ss_dssp EEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHTCTTCEEEEE
T ss_pred EEEEeceEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCce
Confidence 34678889999999 99999999999999999999997 444444
No 250
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.92 E-value=7e-09 Score=77.39 Aligned_cols=128 Identities=15% Similarity=0.075 Sum_probs=70.3
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcc-----------eeeEEEEEE----------------
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVT-----------STCEMQRTV---------------- 65 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~------~~~~t-----------~~~~~~~~~---------------- 65 (174)
+...++++|++|||||||++.|++...+..+.. ..... ....+....
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 457999999999999999999987654433311 00000 000000000
Q ss_pred EeCCcEEEEEeCCCCCCCCCC-hHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEE
Q 030624 66 LKDGQVVNVIDTPGLFDFSAG-SEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVV 144 (174)
Q Consensus 66 ~~~~~~~~~iDtpG~~~~~~~-~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv 144 (174)
........++||+|....... ...+.+......+.....++.+++++|+.... .....+..+.+.. ...+++
T Consensus 181 ~~~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~--~~~~~~~~~~~~~-----~~t~ii 253 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQ--NGLEQAKKFHEAV-----GLTGVI 253 (304)
T ss_dssp HHHTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCT--HHHHHHHHHHHHH-----CCSEEE
T ss_pred HhCCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHH--HHHHHHHHHHHHc-----CCcEEE
Confidence 001224578999998653210 11122222233344566788888899876332 2233333333332 357899
Q ss_pred EeCcCCCCC
Q 030624 145 FTGGDELED 153 (174)
Q Consensus 145 ~tk~D~~~~ 153 (174)
+||.|....
T Consensus 254 vTh~d~~a~ 262 (304)
T 1rj9_A 254 VTKLDGTAK 262 (304)
T ss_dssp EECTTSSCC
T ss_pred EECCccccc
Confidence 999997644
No 251
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=98.91 E-value=5.3e-10 Score=82.02 Aligned_cols=36 Identities=28% Similarity=0.435 Sum_probs=33.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.+.++++|+++.| ..++++|+||||||||++.|+|.
T Consensus 34 ~vl~~vsl~i~~G--e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 34 AILRGLSLDVHPG--EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp EEEEEEEEEECTT--CEEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEeeEEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence 4678889999999 99999999999999999999997
No 252
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.88 E-value=1.7e-08 Score=78.58 Aligned_cols=123 Identities=15% Similarity=0.123 Sum_probs=70.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC------CcccccccCCCCc-----------ceeeEEEEE---------------EE
Q 030624 19 GERTVVLVGRTGNGKSATGNSILG------RRAFKSRASSSGV-----------TSTCEMQRT---------------VL 66 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~------~~~~~~~~~~~~~-----------t~~~~~~~~---------------~~ 66 (174)
+...|+++|++|+||||++..|+. ..+.-........ .....+... ..
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 458999999999999999988873 2211000000000 000000000 00
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624 67 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 145 (174)
Q Consensus 67 -~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~ 145 (174)
..+..+.++||||... .......++...... ..+|.+++|+|+... .......+.+.+.. ....+|+
T Consensus 179 ~~~~~DvVIIDTaGrl~---~d~~lm~el~~i~~~--~~pd~vlLVvDA~~g--q~a~~~a~~f~~~~-----~i~gVIl 246 (443)
T 3dm5_A 179 KSKGVDIIIVDTAGRHK---EDKALIEEMKQISNV--IHPHEVILVIDGTIG--QQAYNQALAFKEAT-----PIGSIIV 246 (443)
T ss_dssp HHTTCSEEEEECCCCSS---CCHHHHHHHHHHHHH--HCCSEEEEEEEGGGG--GGHHHHHHHHHHSC-----TTEEEEE
T ss_pred HhCCCCEEEEECCCccc---chHHHHHHHHHHHHh--hcCceEEEEEeCCCc--hhHHHHHHHHHhhC-----CCeEEEE
Confidence 0225688999999775 234566666554432 357899999998733 22233333333322 4667999
Q ss_pred eCcCCCCC
Q 030624 146 TGGDELED 153 (174)
Q Consensus 146 tk~D~~~~ 153 (174)
||+|....
T Consensus 247 TKlD~~~~ 254 (443)
T 3dm5_A 247 TKLDGSAK 254 (443)
T ss_dssp ECCSSCSS
T ss_pred ECCCCccc
Confidence 99998754
No 253
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.88 E-value=3.1e-10 Score=87.27 Aligned_cols=43 Identities=30% Similarity=0.405 Sum_probs=37.6
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+..+.++++++++.+ ..++++|+||||||||+++|+|... ..|
T Consensus 33 ~~~~L~~vsl~i~~G--e~~~llGpsGsGKSTLLr~iaGl~~-~~G 75 (390)
T 3gd7_A 33 GNAILENISFSISPG--QRVGLLGRTGSGKSTLLSAFLRLLN-TEG 75 (390)
T ss_dssp SCCSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHHTCSE-EEE
T ss_pred CeEEeeceeEEEcCC--CEEEEECCCCChHHHHHHHHhCCCC-CCe
Confidence 345788999999999 9999999999999999999999875 444
No 254
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.87 E-value=2.4e-09 Score=93.60 Aligned_cols=43 Identities=21% Similarity=0.187 Sum_probs=38.6
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.++| .+++++|++|||||||++.|++...+..|.
T Consensus 1093 ~VL~~isl~I~~G--e~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A 1093 EILKGLSFSVEPG--QTLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp CSEEEEEEEECTT--CEEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred ccccceeEEECCC--CEEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence 4788999999999 999999999999999999999988776663
No 255
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=98.86 E-value=1.4e-09 Score=87.86 Aligned_cols=44 Identities=30% Similarity=0.387 Sum_probs=38.7
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+.++++++.+.| ..++++|+||||||||++.|+|...+..|.
T Consensus 356 ~~~l~~v~~~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 399 (582)
T 3b60_A 356 VPALRNINLKIPAG--KTVALVGRSGSGKSTIASLITRFYDIDEGH 399 (582)
T ss_dssp CCSEEEEEEEECTT--CEEEEEECTTSSHHHHHHHHTTTTCCSEEE
T ss_pred CccccceeEEEcCC--CEEEEECCCCCCHHHHHHHHhhccCCCCCe
Confidence 34778899999999 999999999999999999999988776653
No 256
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.83 E-value=2.5e-09 Score=80.55 Aligned_cols=123 Identities=15% Similarity=0.094 Sum_probs=68.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCc--c---------------eeeEEEEEE----------------
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGV--T---------------STCEMQRTV---------------- 65 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~--t---------------~~~~~~~~~---------------- 65 (174)
+...++++|+|||||||+++.|++...+..+...... + ....+....
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~~ 207 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQHA 207 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHHH
Confidence 3489999999999999999999986544333111000 0 000000000
Q ss_pred EeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624 66 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 145 (174)
Q Consensus 66 ~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~ 145 (174)
......+.++||+|..... .....++....+.. .+|..++++|+... ......++.+.+.. ....+++
T Consensus 208 ~~~~~d~vliDtaG~~~~~---~~l~~eL~~i~ral--~~de~llvLDa~t~--~~~~~~~~~~~~~~-----~it~iil 275 (328)
T 3e70_C 208 KARGIDVVLIDTAGRSETN---RNLMDEMKKIARVT--KPNLVIFVGDALAG--NAIVEQARQFNEAV-----KIDGIIL 275 (328)
T ss_dssp HHHTCSEEEEEECCSCCTT---TCHHHHHHHHHHHH--CCSEEEEEEEGGGT--THHHHHHHHHHHHS-----CCCEEEE
T ss_pred HhccchhhHHhhccchhHH---HHHHHHHHHHHHHh--cCCCCEEEEecHHH--HHHHHHHHHHHHhc-----CCCEEEE
Confidence 0012346789999986532 33444444443333 36778888887633 12223333333222 4568999
Q ss_pred eCcCCCCC
Q 030624 146 TGGDELED 153 (174)
Q Consensus 146 tk~D~~~~ 153 (174)
||.|....
T Consensus 276 TKlD~~a~ 283 (328)
T 3e70_C 276 TKLDADAR 283 (328)
T ss_dssp ECGGGCSC
T ss_pred eCcCCccc
Confidence 99998543
No 257
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.83 E-value=2.4e-09 Score=93.35 Aligned_cols=43 Identities=30% Similarity=0.255 Sum_probs=38.2
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| .+++++|++|||||||++.|+|...+..|.
T Consensus 404 ~vL~~isl~i~~G--~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~ 446 (1284)
T 3g5u_A 404 QILKGLNLKVKSG--QTVALVGNSGCGKSTTVQLMQRLYDPLDGM 446 (1284)
T ss_dssp CSEEEEEEEECTT--CEEEEECCSSSSHHHHHHHTTTSSCCSEEE
T ss_pred cceecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeE
Confidence 3678899999999 999999999999999999999988766653
No 258
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=98.83 E-value=1.8e-09 Score=87.46 Aligned_cols=42 Identities=33% Similarity=0.405 Sum_probs=37.7
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+.++++++.+.| ..++++|+||||||||++.|+|...+..|.
T Consensus 359 vl~~isl~i~~G--~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~ 400 (595)
T 2yl4_A 359 IFQDFSLSIPSG--SVTALVGPSGSGKSTVLSLLLRLYDPASGT 400 (595)
T ss_dssp EEEEEEEEECTT--CEEEEECCTTSSSTHHHHHHTTSSCCSEEE
T ss_pred cccceEEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCcE
Confidence 678899999999 999999999999999999999998776653
No 259
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=98.81 E-value=4.7e-09 Score=76.76 Aligned_cols=60 Identities=30% Similarity=0.406 Sum_probs=38.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA 85 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~ 85 (174)
.+++++|.+|+|||||+|+|++......+. ..+.|.... .+. -+..+.++||||+.....
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~-~~g~T~~~~--~~~--~~~~~~l~DtpG~~~~~~ 159 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA-QPGITKGIQ--WFS--LENGVKILDTPGILYKNI 159 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----------CCSC--EEE--CTTSCEEESSCEECCCCC
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC-CCCCccceE--EEE--eCCCEEEEECCCcccCcC
Confidence 489999999999999999999877543332 223333322 121 245788999999998654
No 260
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=98.80 E-value=1.7e-09 Score=94.56 Aligned_cols=43 Identities=28% Similarity=0.280 Sum_probs=38.3
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
-+.++++++.+.| ..++++|++|||||||++.|+|...+..|.
T Consensus 432 ~vL~~isl~i~~G--~~vaivG~sGsGKSTll~ll~~~~~~~~G~ 474 (1321)
T 4f4c_A 432 PILRGMNLRVNAG--QTVALVGSSGCGKSTIISLLLRYYDVLKGK 474 (1321)
T ss_dssp CSEEEEEEEECTT--CEEEEEECSSSCHHHHHHHHTTSSCCSEEE
T ss_pred ceeeceEEeecCC--cEEEEEecCCCcHHHHHHHhccccccccCc
Confidence 4578899999999 999999999999999999999998776663
No 261
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.80 E-value=7.6e-08 Score=78.05 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=30.3
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624 14 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 51 (174)
Q Consensus 14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~ 51 (174)
+...| .+++++|+||+|||||++.|+|...+..|..
T Consensus 378 ~v~~G--ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I 413 (607)
T 3bk7_A 378 EIRKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKV 413 (607)
T ss_dssp EEETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBSCC
T ss_pred ccCCC--CEEEEECCCCCCHHHHHHHHhcCCCCCceEE
Confidence 34556 8999999999999999999999987766643
No 262
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.77 E-value=9.8e-09 Score=79.88 Aligned_cols=125 Identities=18% Similarity=0.144 Sum_probs=69.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC------cccccccCCC---------------CcceeeEE---E-------EEE-E
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGR------RAFKSRASSS---------------GVTSTCEM---Q-------RTV-L 66 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~------~~~~~~~~~~---------------~~t~~~~~---~-------~~~-~ 66 (174)
+...++++|++|+||||++..|+.. .+.-...... +....... . ... .
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHH
Confidence 3589999999999999999988732 1110000000 00000000 0 000 0
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624 67 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 145 (174)
Q Consensus 67 -~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~ 145 (174)
..+..+.++||||..... .......++....... .+|.+++|+|+... .......+.+.+.. ....+++
T Consensus 176 ~~~~~DvvIIDTaGr~~~~-~d~~lm~el~~i~~~~--~pd~vlLVlDa~~g--q~a~~~a~~f~~~~-----~~~gVIl 245 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYG-EETKLLEEMKEMYDVL--KPDDVILVIDASIG--QKAYDLASRFHQAS-----PIGSVII 245 (433)
T ss_dssp TTTTCSEEEEEECCCSSSC-CTTHHHHHHHHHHHHH--CCSEEEEEEEGGGG--GGGHHHHHHHHHHC-----SSEEEEE
T ss_pred HhcCCCEEEEECCCCcccc-CCHHHHHHHHHHHHhh--CCcceEEEEeCccc--hHHHHHHHHHhccc-----CCcEEEE
Confidence 024568899999975411 1234556666554433 46889999998733 22233444444432 4678999
Q ss_pred eCcCCCCC
Q 030624 146 TGGDELED 153 (174)
Q Consensus 146 tk~D~~~~ 153 (174)
||+|....
T Consensus 246 TKlD~~a~ 253 (433)
T 3kl4_A 246 TKMDGTAK 253 (433)
T ss_dssp ECGGGCSC
T ss_pred eccccccc
Confidence 99998643
No 263
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.76 E-value=1.2e-07 Score=75.87 Aligned_cols=35 Identities=17% Similarity=0.194 Sum_probs=30.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 51 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~ 51 (174)
...| .+++|+|+||||||||++.|+|...+..|..
T Consensus 309 i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i 343 (538)
T 1yqt_A 309 IKKG--EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKI 343 (538)
T ss_dssp EETT--CEEEEECCTTSSHHHHHHHHHTSSCCSBCCC
T ss_pred cCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCeEE
Confidence 4556 8999999999999999999999987766643
No 264
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=98.76 E-value=3.9e-09 Score=76.09 Aligned_cols=43 Identities=21% Similarity=0.276 Sum_probs=38.4
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..+.++++++++.+ ..++++|+||||||||++.|+|...+..|
T Consensus 18 ~~vl~~vsl~i~~G--e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G 60 (237)
T 2cbz_A 18 PPTLNGITFSIPEG--ALVAVVGQVGCGKSSLLSALLAEMDKVEG 60 (237)
T ss_dssp CCSEEEEEEEECTT--CEEEEECSTTSSHHHHHHHHTTCSEEEEE
T ss_pred CceeeeeEEEECCC--CEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 45788899999999 99999999999999999999998876555
No 265
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=98.75 E-value=6.2e-08 Score=73.16 Aligned_cols=81 Identities=11% Similarity=0.055 Sum_probs=55.5
Q ss_pred EEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCC-------CCC-HHHHHHHHHHHH
Q 030624 60 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRS-------RFS-QEEEAALHSLQT 131 (174)
Q Consensus 60 ~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~-------~~~-~~~~~~l~~l~~ 131 (174)
....+.. ++..+.+|||+|... .+..+..++.+++++|||+|.++ .-+ ..-.+.+..+..
T Consensus 152 ~~~~~~~-~~v~l~iwDtaGQe~-----------~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~ 219 (340)
T 4fid_A 152 HEYDFVV-KDIPFHLIDVGGQRS-----------ERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKD 219 (340)
T ss_dssp EEEEEES-SSCEEEEEECCSCHH-----------HHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHH
T ss_pred EEEEEEe-eeeeeccccCCCccc-----------ccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHH
Confidence 3444444 567899999999875 77788889999999999999871 001 112344444444
Q ss_pred HHhhh--hcCcEEEEEeCcCCCC
Q 030624 132 LFGKK--IFDYMIVVFTGGDELE 152 (174)
Q Consensus 132 ~~~~~--~~~~~~iv~tk~D~~~ 152 (174)
..... ...|++++.||+|+..
T Consensus 220 i~~~~~~~~~piiLv~NK~DL~~ 242 (340)
T 4fid_A 220 IMTNEFLKGAVKLIFLNKMDLFE 242 (340)
T ss_dssp HHHCGGGTTSEEEEEEECHHHHH
T ss_pred HhhhhccCCCeEEEEEECchhhh
Confidence 44332 2358999999999864
No 266
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.75 E-value=3.6e-08 Score=74.09 Aligned_cols=82 Identities=11% Similarity=0.083 Sum_probs=56.4
Q ss_pred eEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCC-------CCCCHH-HHHHHHHHH
Q 030624 59 CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SRFSQE-EEAALHSLQ 130 (174)
Q Consensus 59 ~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~~~~~-~~~~l~~l~ 130 (174)
.....+.. ++..+.+|||.|... .+..+..++.+++++++|+|.+ +.-+.. -.+.+..+.
T Consensus 157 i~~~~~~~-~~v~l~iwDtgGQe~-----------~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~ 224 (327)
T 3ohm_A 157 IIEYPFDL-QSVIFRMVDVGGQRS-----------ERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFR 224 (327)
T ss_dssp EEEEEEEE-TTEEEEEEEECCSHH-----------HHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHH
T ss_pred EEEEEEEe-eceeeEEEEcCCchh-----------HHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHH
Confidence 34444445 677899999999875 7777788999999999999765 211111 234455555
Q ss_pred HHHhhh--hcCcEEEEEeCcCCCC
Q 030624 131 TLFGKK--IFDYMIVVFTGGDELE 152 (174)
Q Consensus 131 ~~~~~~--~~~~~~iv~tk~D~~~ 152 (174)
+..... ...|++++.||+|+..
T Consensus 225 ~i~~~~~~~~~~iiL~~NK~DL~~ 248 (327)
T 3ohm_A 225 TIITYPWFQNSSVILFLNKKDLLE 248 (327)
T ss_dssp HHHTSGGGTTCEEEEEEECHHHHH
T ss_pred HHhhhhccCCceEEEEEECchhhh
Confidence 554433 2358999999999854
No 267
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.74 E-value=1.6e-08 Score=78.90 Aligned_cols=124 Identities=16% Similarity=0.145 Sum_probs=67.7
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCcccc------cccCC----------------------CC-cceee-EE--EEEE
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRRAFK------SRASS----------------------SG-VTSTC-EM--QRTV 65 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~------~~~~~----------------------~~-~t~~~-~~--~~~~ 65 (174)
++...|+++|++|+||||+++.|+...... ..... .. .+... .. ....
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~ 176 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGME 176 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHH
Confidence 334789999999999999999987632100 00000 00 00000 00 0000
Q ss_pred EeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhc-CcEEEE
Q 030624 66 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIF-DYMIVV 144 (174)
Q Consensus 66 ~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~-~~~~iv 144 (174)
...+..+.++||||.... ......++.. +. ....+|.+++|+|+..+. . .+..+... ... . +...+|
T Consensus 177 ~~~~~D~vIIDT~G~~~~---~~~l~~~l~~-i~-~~~~~d~vllVvda~~g~--~---~~~~~~~~-~~~-~~~i~gvV 244 (432)
T 2v3c_C 177 KFKKADVLIIDTAGRHKE---EKGLLEEMKQ-IK-EITNPDEIILVIDGTIGQ--Q---AGIQAKAF-KEA-VGEIGSII 244 (432)
T ss_dssp TTSSCSEEEEECCCSCSS---HHHHHHHHHH-TT-SSSCCSEEEEEEEGGGGG--G---HHHHHHHH-HTT-SCSCEEEE
T ss_pred HhhCCCEEEEcCCCCccc---cHHHHHHHHH-HH-HHhcCcceeEEeeccccH--H---HHHHHHHH-hhc-ccCCeEEE
Confidence 013456899999998752 2334444432 22 334789999999986443 1 22222222 222 1 237899
Q ss_pred EeCcCCCCC
Q 030624 145 FTGGDELED 153 (174)
Q Consensus 145 ~tk~D~~~~ 153 (174)
+||+|....
T Consensus 245 lnK~D~~~~ 253 (432)
T 2v3c_C 245 VTKLDGSAK 253 (432)
T ss_dssp EECSSSCST
T ss_pred EeCCCCccc
Confidence 999998643
No 268
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.74 E-value=9.7e-08 Score=76.44 Aligned_cols=36 Identities=14% Similarity=0.259 Sum_probs=30.4
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
++.+.+ .+++|+|+||||||||++.|+|...+..|.
T Consensus 289 ~~i~~G--ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~ 324 (538)
T 3ozx_A 289 GEAKEG--EIIGILGPNGIGKTTFARILVGEITADEGS 324 (538)
T ss_dssp EEEETT--CEEEEECCTTSSHHHHHHHHTTSSCCSBCC
T ss_pred ceECCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCcE
Confidence 344556 899999999999999999999998776664
No 269
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=98.72 E-value=3.5e-09 Score=78.96 Aligned_cols=58 Identities=29% Similarity=0.333 Sum_probs=34.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC------CcceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS------GVTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~------~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
.+++++|+||+|||||+|+|++...+..|.... ..|.... .... . ..+++||||+...
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~~--~~~~--~-~g~v~dtpg~~~~ 237 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVE--LIHT--S-GGLVADTPGFSSL 237 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCCC--EEEE--T-TEEEESSCSCSSC
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHHH--Hhhc--C-CEEEecCCCcccc
Confidence 799999999999999999999987665654332 1222111 1111 1 4689999999874
No 270
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.71 E-value=1.7e-08 Score=71.52 Aligned_cols=24 Identities=25% Similarity=0.392 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.+.++++|++|+|||||++.|++.
T Consensus 30 ~~~i~i~G~~g~GKTTl~~~l~~~ 53 (221)
T 2wsm_A 30 TVAVNIMGAIGSGKTLLIERTIER 53 (221)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHH
Confidence 478999999999999999999864
No 271
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=98.69 E-value=5.4e-08 Score=74.01 Aligned_cols=80 Identities=10% Similarity=0.094 Sum_probs=54.9
Q ss_pred EEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC--------CHHHHHHHHHHHH
Q 030624 60 EMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF--------SQEEEAALHSLQT 131 (174)
Q Consensus 60 ~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~--------~~~~~~~l~~l~~ 131 (174)
....+.+ ++..+.+|||+|... .+..+..++.+++++|||+|.++.- ...-.+....+..
T Consensus 184 ~~~~~~~-~~~~l~iwDt~GQe~-----------~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~ 251 (353)
T 1cip_A 184 VETHFTF-KDLHFKMFDVGGQRS-----------ERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDS 251 (353)
T ss_dssp EEEEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHH
T ss_pred EEEEEee-CCeeEEEEeCCCchh-----------hhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHH
Confidence 3334444 577899999999876 5666777899999999999998421 1122344444555
Q ss_pred HHhhh--hcCcEEEEEeCcCCC
Q 030624 132 LFGKK--IFDYMIVVFTGGDEL 151 (174)
Q Consensus 132 ~~~~~--~~~~~~iv~tk~D~~ 151 (174)
..... ...|++++.||+|+.
T Consensus 252 i~~~~~~~~~piiLv~NK~DL~ 273 (353)
T 1cip_A 252 ICNNKWFTDTSIILFLNKKDLF 273 (353)
T ss_dssp HHTCGGGTTSEEEEEEECHHHH
T ss_pred HHcCccccCCcEEEEEECcCch
Confidence 44322 236899999999985
No 272
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.69 E-value=2.7e-07 Score=68.61 Aligned_cols=130 Identities=14% Similarity=0.086 Sum_probs=69.1
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc------cCCCCc-c----------eeeEEEE----------
Q 030624 11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR------ASSSGV-T----------STCEMQR---------- 63 (174)
Q Consensus 11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~------~~~~~~-t----------~~~~~~~---------- 63 (174)
++++.+ ...++++|++|+||||++..|++......+ ...... . ....+..
T Consensus 92 i~~~~~---~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~~a~~ql~~~~~~~~v~v~~~~~~~~p~~~ 168 (297)
T 1j8m_F 92 VIPDKI---PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRPAALEQLQQLGQQIGVPVYGEPGEKDVVGI 168 (297)
T ss_dssp CSCSSS---SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSSHHHHHHHHHHHHHTCCEECCTTCCCHHHH
T ss_pred cccCCC---CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHHHhccCCeEEEecCCCCCHHHH
Confidence 455443 488999999999999999988743211111 000000 0 0000000
Q ss_pred ----EE-Ee-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhh
Q 030624 64 ----TV-LK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI 137 (174)
Q Consensus 64 ----~~-~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~ 137 (174)
.. .. .+..+.++||||.... ...+....++..... ...+|.+++|+++... ... ++.++.. ...
T Consensus 169 ~~~~l~~~~~~~~D~ViIDTpg~~~~-~~~~~l~~el~~i~~--~~~~d~vllVvda~~g--~~~---~~~~~~~-~~~- 238 (297)
T 1j8m_F 169 AKRGVEKFLSEKMEIIIVDTAGRHGY-GEEAALLEEMKNIYE--AIKPDEVTLVIDASIG--QKA---YDLASKF-NQA- 238 (297)
T ss_dssp HHHHHHHHHHTTCSEEEEECCCSCCT-TCHHHHHHHHHHHHH--HHCCSEEEEEEEGGGG--GGH---HHHHHHH-HHT-
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCccc-ccHHHHHHHHHHHHH--HhcCCEEEEEeeCCch--HHH---HHHHHHH-Hhh-
Confidence 00 01 3446899999998751 123334444443322 2257889999998632 222 2223322 222
Q ss_pred cCcEEEEEeCcCCCCC
Q 030624 138 FDYMIVVFTGGDELED 153 (174)
Q Consensus 138 ~~~~~iv~tk~D~~~~ 153 (174)
.+...+++||+|....
T Consensus 239 ~~i~gvVlnk~D~~~~ 254 (297)
T 1j8m_F 239 SKIGTIIITKMDGTAK 254 (297)
T ss_dssp CTTEEEEEECGGGCTT
T ss_pred CCCCEEEEeCCCCCcc
Confidence 1337789999998643
No 273
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.68 E-value=1.8e-07 Score=75.83 Aligned_cols=42 Identities=19% Similarity=0.311 Sum_probs=33.2
Q ss_pred cccccCCCCCC---ceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 9 DDWELTSPSNG---ERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 9 ~~~~~~~~~~~---~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+++++...+. ..+++++|+||||||||++.|+|...+..|.
T Consensus 364 ~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~ 408 (608)
T 3j16_B 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQ 408 (608)
T ss_dssp SSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCC
T ss_pred CceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 45566665552 2679999999999999999999998877764
No 274
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=98.67 E-value=4.8e-09 Score=71.81 Aligned_cols=29 Identities=38% Similarity=0.548 Sum_probs=24.7
Q ss_pred ccccCCCCCCceEEEEEcCCCCCHHHHHHHH
Q 030624 10 DWELTSPSNGERTVVLVGRTGNGKSATGNSI 40 (174)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l 40 (174)
+++|+.+.+ ..++++|+||||||||++.+
T Consensus 1 ~vsl~i~~g--ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 1 SMKLTIPEL--SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp CEEEEEESS--EEEEEECCTTSCHHHHHHHH
T ss_pred CccccCCCC--EEEEEECCCCCCHHHHHHHH
Confidence 356777777 99999999999999999943
No 275
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=98.67 E-value=3e-08 Score=73.88 Aligned_cols=58 Identities=28% Similarity=0.332 Sum_probs=38.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----C-cceeeEEEEEEEeCCcEEEEEeCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----G-VTSTCEMQRTVLKDGQVVNVIDTPGLFD 82 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~----~-~t~~~~~~~~~~~~~~~~~~iDtpG~~~ 82 (174)
..++++|+||+|||||+|+|+ ...+..|.... + .++.. ..... .....+++||||+..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~-~~~~~--~~~~g~v~d~pg~~~ 228 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTG-VRLIP--FGKGSFVGDTPGFSK 228 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCC-EEEEE--ETTTEEEESSCCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceee-EEEEE--cCCCcEEEECcCcCc
Confidence 689999999999999999999 77666664432 1 11111 11111 124578999999874
No 276
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.64 E-value=4e-08 Score=73.32 Aligned_cols=133 Identities=15% Similarity=0.178 Sum_probs=70.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcccccccC------CCCcc-----------eeeEEEEE----------------E
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRAS------SSGVT-----------STCEMQRT----------------V 65 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~------~~~~t-----------~~~~~~~~----------------~ 65 (174)
+...++++|++|+||||++..|++......+.. ..... ........ .
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~a 182 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAHA 182 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHHH
Confidence 348999999999999999999876543222110 00000 00000000 0
Q ss_pred EeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhc----cCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcE
Q 030624 66 LKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMA----KDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYM 141 (174)
Q Consensus 66 ~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~----~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~ 141 (174)
...+..+.++||||... ..+.+..++.+..... ...++.+++++++. +. ...++.+.... +.. ...
T Consensus 183 ~~~~~dvvIiDtpg~~~---~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~---t~--~~~l~~a~~~~-~~~-~i~ 252 (306)
T 1vma_A 183 LARNKDVVIIDTAGRLH---TKKNLMEELRKVHRVVKKKIPDAPHETLLVIDAT---TG--QNGLVQAKIFK-EAV-NVT 252 (306)
T ss_dssp HHTTCSEEEEEECCCCS---CHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGG---GH--HHHHHHHHHHH-HHS-CCC
T ss_pred HhcCCCEEEEECCCchh---hHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECC---CC--HHHHHHHHHHH-hcC-CCC
Confidence 11234589999999643 3444555554433321 24578899999886 12 22222233222 111 345
Q ss_pred EEEEeCcCCCCCChhhHHHHh
Q 030624 142 IVVFTGGDELEDNDETLEDYL 162 (174)
Q Consensus 142 ~iv~tk~D~~~~~~~~~~~~~ 162 (174)
-+++||.|....- ..+....
T Consensus 253 gvVlTk~D~~~~g-G~~l~~~ 272 (306)
T 1vma_A 253 GIILTKLDGTAKG-GITLAIA 272 (306)
T ss_dssp EEEEECGGGCSCT-THHHHHH
T ss_pred EEEEeCCCCccch-HHHHHHH
Confidence 6778999986443 3344443
No 277
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=98.63 E-value=1.3e-08 Score=75.42 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=37.4
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++|+++.| ..++++|+||||||||++.|+|...+..|
T Consensus 52 ~vl~~isl~i~~G--e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G 93 (290)
T 2bbs_A 52 PVLKDINFKIERG--QLLAVAGSTGAGKTSLLMMIMGELEPSEG 93 (290)
T ss_dssp CSEEEEEEEECTT--CEEEEEESTTSSHHHHHHHHTTSSCEEEE
T ss_pred eEEEeeEEEEcCC--CEEEEECCCCCcHHHHHHHHhcCCCCCCc
Confidence 4677889999998 99999999999999999999998876655
No 278
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.60 E-value=3.2e-08 Score=73.73 Aligned_cols=59 Identities=29% Similarity=0.313 Sum_probs=38.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccCCC----C--cceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSS----G--VTSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~----~--~t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
..++++|+||+|||||+|+|++...+..|.... + .|... .... .....+++|+||+...
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~--~~~~--~~~~g~v~q~p~~~~~ 234 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTA--QLLK--FDFGGYVVDTPGFANL 234 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSC--CEEE--CTTSCEEESSCSSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeee--EEEE--cCCCCEEEECcCCCcc
Confidence 689999999999999999999988776664332 1 11111 1111 2345789999998753
No 279
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=98.60 E-value=3.8e-08 Score=85.97 Aligned_cols=43 Identities=21% Similarity=0.206 Sum_probs=38.3
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
.+.++++++.+.| .+++++|++|||||||++.|+|...+..|.
T Consensus 1047 ~~l~~vsl~i~~G--e~v~ivG~sGsGKSTl~~~l~g~~~p~~G~ 1089 (1284)
T 3g5u_A 1047 PVLQGLSLEVKKG--QTLALVGSSGCGKSTVVQLLERFYDPMAGS 1089 (1284)
T ss_dssp CSBSSCCEEECSS--SEEEEECSSSTTHHHHHHHHTTSSCCSEEE
T ss_pred eeecceeEEEcCC--CEEEEECCCCCCHHHHHHHHhcCcCCCCCE
Confidence 3678899999999 999999999999999999999988776663
No 280
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.60 E-value=3.3e-07 Score=63.10 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~ 44 (174)
+++++|+||||||||++.|++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999865
No 281
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.60 E-value=1.5e-07 Score=70.65 Aligned_cols=141 Identities=16% Similarity=0.121 Sum_probs=74.9
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCcc-------e-----eeEEEEE------
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVT-------S-----TCEMQRT------ 64 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~------~~~~~t-------~-----~~~~~~~------ 64 (174)
.+++++...+ ..++++|++|+||||++..|++......+. ...... . .....-+
T Consensus 96 ~~l~~~~~~~--~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 96 YRIDFKENRL--NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp CCCCCCTTSC--EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cCccccCCCC--eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 4566665554 899999999999999998876543221110 000000 0 0001111
Q ss_pred -------------EEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHh----ccCCceEEEEEEeCCCCCCHHHHHHHH
Q 030624 65 -------------VLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGM----AKDGIHAVLVVFSVRSRFSQEEEAALH 127 (174)
Q Consensus 65 -------------~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~----~~~~~~~il~v~~~~~~~~~~~~~~l~ 127 (174)
....+..+.+|||||.... .+..+.++...... ....+|.+++++++... . ..++
T Consensus 174 ~~p~~~~~~~l~~~~~~~yD~VIIDTpg~l~~---~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~---~~l~ 245 (320)
T 1zu4_A 174 ADPASVVFDAIKKAKEQNYDLLLIDTAGRLQN---KTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--Q---NGVI 245 (320)
T ss_dssp CCHHHHHHHHHHHHHHTTCSEEEEECCCCGGG---HHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--H---HHHH
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCCcccc---cHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--H---HHHH
Confidence 0012346899999998752 23344444332221 12347899999988722 2 2333
Q ss_pred HHHHHHhhhhcCcEEEEEeCcCCCCCChhhHHHHh
Q 030624 128 SLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYL 162 (174)
Q Consensus 128 ~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~ 162 (174)
.++.. .... ...=+++||+|..... ..+....
T Consensus 246 ~~~~~-~~~~-~i~GvVltk~d~~~~~-g~~~~~~ 277 (320)
T 1zu4_A 246 QAEEF-SKVA-DVSGIILTKMDSTSKG-GIGLAIK 277 (320)
T ss_dssp HHHHH-TTTS-CCCEEEEECGGGCSCT-THHHHHH
T ss_pred HHHHH-hhcC-CCcEEEEeCCCCCCch-hHHHHHH
Confidence 33333 2221 2345788999975442 3444443
No 282
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=98.57 E-value=3.3e-08 Score=66.81 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=33.9
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..+++++.+.+ ..++++|++|||||||++.|++.. +..|.
T Consensus 23 l~~vsl~i~~G--e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~ 62 (158)
T 1htw_A 23 EILLKLHTEKA--IMVYLNGDLGAGKTTLTRGMLQGI-GHQGN 62 (158)
T ss_dssp HHHHHHCCSSC--EEEEEECSTTSSHHHHHHHHHHHT-TCCSC
T ss_pred HhccccccCCC--CEEEEECCCCCCHHHHHHHHHHhC-CCCCe
Confidence 45677888888 899999999999999999999987 55553
No 283
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.49 E-value=4.5e-08 Score=69.57 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=24.5
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.++++|+.+.+ ..++|+|+||||||||++.|++..
T Consensus 13 l~~isl~i~~G--~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 13 GLVPRGSMNNI--YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp ---------CC--CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccCCceecCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence 56788999888 899999999999999999999865
No 284
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=98.49 E-value=6e-08 Score=73.71 Aligned_cols=60 Identities=32% Similarity=0.454 Sum_probs=37.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc-cccccCCCC--c---ceeeEEEEEEEeCCcEEEEEeCCCCCCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRA-FKSRASSSG--V---TSTCEMQRTVLKDGQVVNVIDTPGLFDF 83 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~-~~~~~~~~~--~---t~~~~~~~~~~~~~~~~~~iDtpG~~~~ 83 (174)
..++++|+||+|||||+|.|++... +..|..... . ++. . ....+ -.+...++||||+.++
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~-~-~~i~~-v~q~~~l~dtpgv~e~ 281 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTT-A-ARLYH-FPHGGDVIDSPGVREF 281 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------C-C-CEEEE-CTTSCEEEECHHHHTC
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceE-E-EEEEE-ECCCCEecCcccHHHh
Confidence 6899999999999999999999876 655533221 0 111 1 11111 2233468999998664
No 285
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=98.48 E-value=8.9e-07 Score=69.16 Aligned_cols=107 Identities=18% Similarity=0.135 Sum_probs=57.7
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCC-----------------cccccccCCCCcceeeEEEEEEEe--------C--C
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGR-----------------RAFKSRASSSGVTSTCEMQRTVLK--------D--G 69 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~-----------------~~~~~~~~~~~~t~~~~~~~~~~~--------~--~ 69 (174)
..+...|+|+|+.++|||||+|.|++. ..+..+.+....|.. -..|. . +
T Consensus 64 ~~~v~vVsV~G~~~~GKStLLN~llg~~~~~~~~~wl~~~~~~~~~f~~~~t~~~~T~G----Iw~~~~p~~~~~~~~~~ 139 (447)
T 3q5d_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTG----IQIWSEIFLINKPDGKK 139 (447)
T ss_dssp TSBEEEEEEEESTTSSHHHHHHHHHHHHHCCSTTTSSCCTTSBCCSSCSCCSSCCCCCE----EEEESSCEEEECSSSCE
T ss_pred CCceEEEEEECCCCCcHHHHHHHHhhhcccccccccccccccccceecCCCCCCCceeE----EEEecCccccccCCCCc
Confidence 344578999999999999999999864 122222111122221 11121 1 2
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHH
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLF 133 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~ 133 (174)
..+.++||||+.+...+ ......+...+.. -.+.+||-+ ...+...+.+.+..+.++.
T Consensus 140 ~~vvllDTeG~~~~~~~-~~~d~~ifal~~l---LSs~~IyN~--~~~i~~~~l~~L~~~~e~~ 197 (447)
T 3q5d_A 140 VAVLLMDTQGTFDSQST-LRDSATVFALSTM---ISSIQVYNL--SQNVQEDDLQHLQLFTEYG 197 (447)
T ss_dssp EEEEEEEEECCCSSHHH-HHHHHHHHHHHHH---HCSEEEEEE--SSSCCHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCcccccccc-hhhhHHHHHHHHH---HhhHHHHhh--cccccHHHHHHHHHHHHHH
Confidence 46899999999874211 1111112211111 124455443 3356777777777666653
No 286
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.45 E-value=9.1e-08 Score=69.10 Aligned_cols=39 Identities=21% Similarity=0.184 Sum_probs=24.3
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
|+..+.++++|+.+.+ ..++|+|++|||||||++.|.+.
T Consensus 10 ~~~~~l~~isl~i~~g--~iigI~G~~GsGKSTl~k~L~~~ 48 (245)
T 2jeo_A 10 GVDLGTENLYFQSMRP--FLIGVSGGTASGKSTVCEKIMEL 48 (245)
T ss_dssp -------------CCS--EEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCceeecceeccCCCC--EEEEEECCCCCCHHHHHHHHHHH
Confidence 3445788899999988 99999999999999999999874
No 287
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.44 E-value=7.2e-08 Score=71.67 Aligned_cols=131 Identities=17% Similarity=0.201 Sum_probs=68.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCccccccc-------CCCCccee-----------eEEEE----------E-EEeCCc
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRA-------SSSGVTST-----------CEMQR----------T-VLKDGQ 70 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~-------~~~~~t~~-----------~~~~~----------~-~~~~~~ 70 (174)
...++++|++|+||||++..|++......|. .....+.. ..... . .. .+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~~~~~l~~al~~~-~~~ 183 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPLEVCYTKEEFQQAKELF-SEY 183 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCCCBCSSHHHHHHHHHHG-GGS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCeEecCCHHHHHHHHHHh-cCC
Confidence 4799999999999999999987644321221 00000000 00000 0 01 345
Q ss_pred EEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCC
Q 030624 71 VVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDE 150 (174)
Q Consensus 71 ~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~ 150 (174)
.+.++||||.... ......++.+.+. ...++.++++++++.. ..+ +..+.+.+.. ....-+++||.|.
T Consensus 184 dlvIiDT~G~~~~---~~~~~~el~~~l~--~~~~~~~~lVl~at~~--~~~---~~~~~~~~~~--l~~~giVltk~D~ 251 (296)
T 2px0_A 184 DHVFVDTAGRNFK---DPQYIDELKETIP--FESSIQSFLVLSATAK--YED---MKHIVKRFSS--VPVNQYIFTKIDE 251 (296)
T ss_dssp SEEEEECCCCCTT---SHHHHHHHHHHSC--CCTTEEEEEEEETTBC--HHH---HHHHTTTTSS--SCCCEEEEECTTT
T ss_pred CEEEEeCCCCChh---hHHHHHHHHHHHh--hcCCCeEEEEEECCCC--HHH---HHHHHHHHhc--CCCCEEEEeCCCc
Confidence 6899999998852 2333444443322 2246778888887632 122 1122222221 1344567799998
Q ss_pred CCCChhhHHHHhcc
Q 030624 151 LEDNDETLEDYLGR 164 (174)
Q Consensus 151 ~~~~~~~~~~~~~~ 164 (174)
.... ..+......
T Consensus 252 ~~~~-g~~~~~~~~ 264 (296)
T 2px0_A 252 TTSL-GSVFNILAE 264 (296)
T ss_dssp CSCC-HHHHHHHHT
T ss_pred ccch-hHHHHHHHH
Confidence 7543 344444433
No 288
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=98.43 E-value=3.7e-06 Score=71.21 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=28.9
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHH
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSI 40 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l 40 (174)
.-+..++++..+.+ ..++|+||||+||||+++.+
T Consensus 649 ~~v~ndisl~~~~g--~i~~ItGpNGsGKSTlLr~i 682 (934)
T 3thx_A 649 AFIPNDVYFEKDKQ--MFHIITGPNMGGKSTYIRQT 682 (934)
T ss_dssp CCCCEEEEEETTTB--CEEEEECCTTSSHHHHHHHH
T ss_pred eeecccceeecCCC--eEEEEECCCCCCHHHHHHHH
Confidence 34566777877776 89999999999999999998
No 289
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=98.42 E-value=1.1e-07 Score=71.72 Aligned_cols=39 Identities=23% Similarity=0.264 Sum_probs=31.1
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+++++..+.+ ..++++|+||||||||+++|++...+..+
T Consensus 162 ~~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~~~~g 200 (330)
T 2pt7_A 162 SAIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEER 200 (330)
T ss_dssp HHHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSCTTSC
T ss_pred hhhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 3445555556 78999999999999999999998766544
No 290
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.42 E-value=4.1e-06 Score=65.33 Aligned_cols=124 Identities=16% Similarity=0.129 Sum_probs=66.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHh-------CCcccccccCCCCc---------ce--eeEEEE--------------E-
Q 030624 18 NGERTVVLVGRTGNGKSATGNSIL-------GRRAFKSRASSSGV---------TS--TCEMQR--------------T- 64 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~-------~~~~~~~~~~~~~~---------t~--~~~~~~--------------~- 64 (174)
.+...|+++|++|+||||+...|+ |..+.-........ .. ...+.. .
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~ 177 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALK 177 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHH
Confidence 445789999999999999998877 33221110000000 00 000000 0
Q ss_pred EEe-CCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEE
Q 030624 65 VLK-DGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIV 143 (174)
Q Consensus 65 ~~~-~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~i 143 (174)
... .+..+.++||||.... .+....++..... ...++.+++|+++....+ .... +..+ .... ...-+
T Consensus 178 ~~~~~~~D~VIIDTpG~l~~---~~~l~~~L~~~~~--~~~p~~vllVvda~~g~~--~~~~---~~~f-~~~l-~i~gv 245 (433)
T 2xxa_A 178 EAKLKFYDVLLVDTAGRLHV---DEAMMDEIKQVHA--SINPVETLFVVDAMTGQD--AANT---AKAF-NEAL-PLTGV 245 (433)
T ss_dssp HHHHTTCSEEEEECCCCCTT---CHHHHHHHHHHHH--HSCCSEEEEEEETTBCTT--HHHH---HHHH-HHHS-CCCCE
T ss_pred HHHhCCCCEEEEECCCcccc---cHHHHHHHHHHHH--hhcCcceeEEeecchhHH--HHHH---HHHH-hccC-CCeEE
Confidence 011 3456899999997652 2334444443322 346788999999873322 2222 2222 2221 22457
Q ss_pred EEeCcCCCCC
Q 030624 144 VFTGGDELED 153 (174)
Q Consensus 144 v~tk~D~~~~ 153 (174)
++||+|....
T Consensus 246 VlnK~D~~~~ 255 (433)
T 2xxa_A 246 VLTKVDGDAR 255 (433)
T ss_dssp EEECTTSSSC
T ss_pred EEecCCCCcc
Confidence 8999998644
No 291
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.38 E-value=1.9e-06 Score=66.93 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=66.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCcc-----------eeeEEEEE--------------E-E
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVT-----------STCEMQRT--------------V-L 66 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~------~~~~~t-----------~~~~~~~~--------------~-~ 66 (174)
+...++++|++|+||||++..|++......+. ...... ....+... . .
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~~gv~v~~~~~~~~p~~i~~~~l~~~ 176 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhcccCCccEEecCCCCCHHHHHHHHHHHH
Confidence 34789999999999999998877543221110 000000 00000000 0 0
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624 67 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 145 (174)
Q Consensus 67 -~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~ 145 (174)
.....+.++||||.... ......++....... .+|.+++|+|+... . ..++.++.+ .... ...-+++
T Consensus 177 ~~~~~DvVIIDTaG~l~~---d~~l~~el~~i~~~~--~pd~vlLVvDa~tg--q---~av~~a~~f-~~~l-~i~GVIl 244 (425)
T 2ffh_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--Q---EALSVARAF-DEKV-GVTGLVL 244 (425)
T ss_dssp HHTTCSEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--T---HHHHHHHHH-HHHT-CCCEEEE
T ss_pred HHCCCCEEEEcCCCcccc---cHHHHHHHHHhhhcc--CCceEEEEEeccch--H---HHHHHHHHH-HhcC-CceEEEE
Confidence 13345899999997753 234455554443322 57888999998622 1 222223322 2221 3466789
Q ss_pred eCcCCCCC
Q 030624 146 TGGDELED 153 (174)
Q Consensus 146 tk~D~~~~ 153 (174)
||+|....
T Consensus 245 TKlD~~~~ 252 (425)
T 2ffh_A 245 TKLDGDAR 252 (425)
T ss_dssp ESGGGCSS
T ss_pred eCcCCccc
Confidence 99997543
No 292
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=98.35 E-value=2.3e-06 Score=72.26 Aligned_cols=37 Identities=19% Similarity=0.296 Sum_probs=31.8
Q ss_pred CCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624 4 GSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
..-+..+++++.+.+ ..++|+||||+|||||++.+.+
T Consensus 659 ~~~V~ndvsl~~~~g--~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 659 DQYVPNNTDLSEDSE--RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SSSCCEEEEECTTSC--CEEEEESCCCHHHHHHHHHHHH
T ss_pred CceecccccccCCCC--eEEEEECCCCCchHHHHHHHHH
Confidence 345777888888877 8999999999999999999864
No 293
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=98.34 E-value=1.2e-07 Score=70.61 Aligned_cols=36 Identities=22% Similarity=0.306 Sum_probs=31.8
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
+.++++++++.+ ..++|+|++|+|||||++.|+|..
T Consensus 115 vL~~vsl~i~~G--e~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 115 ALKLWLKGIPKK--NCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp HHHHHHHTCTTC--SEEEEECSSSSSHHHHHHHHHHHH
T ss_pred hhccceEEecCC--CEEEEECCCCCcHHHHHHHHhhhc
Confidence 356788999998 999999999999999999999754
No 294
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=98.32 E-value=4.8e-07 Score=72.48 Aligned_cols=41 Identities=20% Similarity=0.169 Sum_probs=33.6
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+..+++ +.+.| .+++++|+||||||||++.|+|...+..|.
T Consensus 37 ~l~~vs-~i~~G--e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~ 77 (538)
T 1yqt_A 37 VLYRLP-VVKEG--MVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77 (538)
T ss_dssp EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTT
T ss_pred cccCcC-cCCCC--CEEEEECCCCCCHHHHHHHHhCCCCCCCCc
Confidence 345555 56666 999999999999999999999988776664
No 295
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.31 E-value=6.7e-07 Score=63.36 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..+|+++|.+|+|||||++.++..
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~ 61 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDN 61 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHH
Confidence 488999999999999999999865
No 296
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=98.27 E-value=4e-07 Score=63.98 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=23.9
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 13 LTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.+.+.+ ..++++|+||||||||++.|+|..
T Consensus 15 ~~i~~G--ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 15 QPAAVG--RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp ----CC--CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence 355566 899999999999999999999865
No 297
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=98.27 E-value=7.4e-07 Score=72.33 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=33.5
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
+..+++ +.+.| ..++++|+||||||||++.|+|...+..|.
T Consensus 107 ~l~~vs-~i~~G--e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~ 147 (607)
T 3bk7_A 107 VLYRLP-IVKDG--MVVGIVGPNGTGKTTAVKILAGQLIPNLCE 147 (607)
T ss_dssp EEECCC-CCCTT--SEEEEECCTTSSHHHHHHHHTTSSCCCTTT
T ss_pred eeCCCC-CCCCC--CEEEEECCCCChHHHHHHHHhCCCCCCCCc
Confidence 345555 56666 999999999999999999999988776664
No 298
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.25 E-value=2.6e-07 Score=65.98 Aligned_cols=36 Identities=19% Similarity=0.325 Sum_probs=21.5
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHh-CCc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL-GRR 44 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~-~~~ 44 (174)
..++.+|+.+.+ ..++|+|++|||||||++.|+ +..
T Consensus 16 ~~~~~sl~v~~G--~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 16 TQGPGSMLKSVG--VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ------CCEECC--CEEEEECSCC----CHHHHHHC---
T ss_pred ccCCCCcccCCC--CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 345677888888 899999999999999999999 764
No 299
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.23 E-value=6.2e-07 Score=62.61 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..++++|+||||||||++.|++..
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 789999999999999999999864
No 300
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=98.23 E-value=5.8e-06 Score=61.31 Aligned_cols=123 Identities=20% Similarity=0.213 Sum_probs=66.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccccccc------CCCCcc---------eeeEEEEEE-----------------E
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRA------SSSGVT---------STCEMQRTV-----------------L 66 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~------~~~~~t---------~~~~~~~~~-----------------~ 66 (174)
+...++++|++|+||||++..|++......+. ...... ......... .
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~ 176 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKA 176 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHH
Confidence 34789999999999999999887643322111 000000 000000000 0
Q ss_pred -eCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEE
Q 030624 67 -KDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVF 145 (174)
Q Consensus 67 -~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~ 145 (174)
..+..+.++||||.... ......++....... .++.+++++++... . ..++.++.. .... ...-+++
T Consensus 177 ~~~~~D~viiDtpp~~~~---d~~~~~~l~~~~~~~--~~~~~~lv~~~~~~--~---~~~~~~~~~-~~~~-~i~givl 244 (295)
T 1ls1_A 177 RLEARDLILVDTAGRLQI---DEPLMGELARLKEVL--GPDEVLLVLDAMTG--Q---EALSVARAF-DEKV-GVTGLVL 244 (295)
T ss_dssp HHHTCCEEEEECCCCSSC---CHHHHHHHHHHHHHH--CCSEEEEEEEGGGT--H---HHHHHHHHH-HHHT-CCCEEEE
T ss_pred HhCCCCEEEEeCCCCccc---cHHHHHHHHHHhhhc--CCCEEEEEEeCCCc--H---HHHHHHHHH-hhcC-CCCEEEE
Confidence 02346899999987642 233445554444432 46778888887622 2 222333332 2221 3455789
Q ss_pred eCcCCCCC
Q 030624 146 TGGDELED 153 (174)
Q Consensus 146 tk~D~~~~ 153 (174)
||+|....
T Consensus 245 nk~d~~~~ 252 (295)
T 1ls1_A 245 TKLDGDAR 252 (295)
T ss_dssp ECGGGCSS
T ss_pred ECCCCCcc
Confidence 99998654
No 301
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=98.20 E-value=2.8e-07 Score=65.01 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=26.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRAS 51 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~ 51 (174)
..++++|+||||||||++.|+|. .+..|..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I 52 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQV 52 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH-HHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcC-CCcCCee
Confidence 78999999999999999999999 7766643
No 302
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=98.18 E-value=3.7e-07 Score=77.30 Aligned_cols=42 Identities=21% Similarity=0.256 Sum_probs=37.2
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+.++++++.+.| .+++|+|+||||||||++.|+|...+..|
T Consensus 687 ~iL~dVSl~I~~G--eivaIiGpNGSGKSTLLklLaGll~P~sG 728 (986)
T 2iw3_A 687 PQITDINFQCSLS--SRIAVIGPNGAGKSTLINVLTGELLPTSG 728 (986)
T ss_dssp CSEEEEEEEEETT--CEEEECSCCCHHHHHHHHHHTTSSCCSEE
T ss_pred eeeeccEEEEcCC--CEEEEECCCCCCHHHHHHHHhCCCCCCce
Confidence 3577889999998 99999999999999999999998876655
No 303
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=98.17 E-value=5.7e-06 Score=67.99 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=27.6
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHH
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATG 37 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStli 37 (174)
.+.++++|+++.+ .+++|+|+||||||||+
T Consensus 32 ~~L~~vsl~i~~G--e~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 32 HNLKNIDVEIPRG--KLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp TTCCSEEEEEETT--SEEEEECSTTSSHHHHH
T ss_pred cceeccEEEECCC--CEEEEECCCCCCHHHHh
Confidence 4578999999999 99999999999999996
No 304
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.17 E-value=5e-07 Score=65.94 Aligned_cols=37 Identities=22% Similarity=0.162 Sum_probs=28.9
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 47 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~ 47 (174)
+.++++ .+.+ ..++++|+||||||||++.|++...+.
T Consensus 16 vl~~i~--i~~g--~~v~i~Gp~GsGKSTll~~l~g~~~~~ 52 (261)
T 2eyu_A 16 KVLELC--HRKM--GLILVTGPTGSGKSTTIASMIDYINQT 52 (261)
T ss_dssp HHHHGG--GCSS--EEEEEECSTTCSHHHHHHHHHHHHHHH
T ss_pred HHHHHh--hCCC--CEEEEECCCCccHHHHHHHHHHhCCCC
Confidence 344444 4555 899999999999999999999976543
No 305
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=98.17 E-value=1.8e-06 Score=70.06 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=29.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccccC
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRAS 51 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~ 51 (174)
...| ..++++|+||+|||||++.|+|...+..|..
T Consensus 100 ~~~G--ei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i 134 (608)
T 3j16_B 100 PRPG--QVLGLVGTNGIGKSTALKILAGKQKPNLGRF 134 (608)
T ss_dssp CCTT--SEEEEECCTTSSHHHHHHHHHTSSCCCTTTT
T ss_pred CCCC--CEEEEECCCCChHHHHHHHHhcCCCCCCceE
Confidence 3444 8999999999999999999999988777643
No 306
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.17 E-value=5.8e-07 Score=62.09 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
..++++||||||||||++.|++..+
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5689999999999999999998764
No 307
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=98.16 E-value=1.4e-05 Score=66.80 Aligned_cols=39 Identities=21% Similarity=0.259 Sum_probs=31.9
Q ss_pred CCCCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 3 GGSAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
+..-+..+++++ +.+ ..++|+||||+|||||++.+.+..
T Consensus 593 ~~~~vlndisl~-~~g--~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 593 NEPFIANPLNLS-PQR--RMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp SSCCCCEEEEEC-SSS--CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceeeeccccc-CCC--cEEEEECCCCCChHHHHHHHHHHH
Confidence 344567788888 555 899999999999999999998754
No 308
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=98.16 E-value=2.3e-05 Score=67.10 Aligned_cols=40 Identities=23% Similarity=0.206 Sum_probs=30.9
Q ss_pred CCcccccccCCCC-----CCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 5 SAIDDDWELTSPS-----NGERTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 5 ~~~~~~~~~~~~~-----~~~~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
.-+..++++..+. +....++|+||||+|||||++.+ |...
T Consensus 769 ~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~ 813 (1022)
T 2o8b_B 769 DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLA 813 (1022)
T ss_dssp CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHH
T ss_pred ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHH
Confidence 4467777887765 11389999999999999999998 6554
No 309
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=98.16 E-value=1.8e-06 Score=69.21 Aligned_cols=30 Identities=17% Similarity=0.227 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
..++++|+||||||||++.|+|...+..|.
T Consensus 26 ei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~ 55 (538)
T 3ozx_A 26 TILGVLGKNGVGKTTVLKILAGEIIPNFGD 55 (538)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSCCCTTC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCCCCCCc
Confidence 899999999999999999999998776664
No 310
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.15 E-value=7.9e-07 Score=62.13 Aligned_cols=24 Identities=38% Similarity=0.566 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..++|+||||||||||++.|++..
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998854
No 311
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=98.14 E-value=4.5e-07 Score=71.27 Aligned_cols=38 Identities=16% Similarity=0.218 Sum_probs=32.3
Q ss_pred ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+++++++.| .+++|+|+||||||||++.|+|...+..|
T Consensus 130 ~vsl~i~~G--e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G 167 (460)
T 2npi_A 130 KIRMSNFEG--PRVVIVGGSQTGKTSLSRTLCSYALKFNA 167 (460)
T ss_dssp HHHHHSSSC--CCEEEEESTTSSHHHHHHHHHHTTHHHHC
T ss_pred cCceEeCCC--CEEEEECCCCCCHHHHHHHHhCcccccCC
Confidence 456777777 99999999999999999999998766555
No 312
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.13 E-value=1.1e-06 Score=62.43 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
..++|+||||||||||++.|++..+
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 7899999999999999999999765
No 313
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=98.12 E-value=4.2e-07 Score=69.35 Aligned_cols=39 Identities=23% Similarity=0.395 Sum_probs=32.3
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+++++..+.+ ..++++|+||||||||+++|++...+..+
T Consensus 166 ~~l~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~~~g 204 (361)
T 2gza_A 166 SFLRRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPFDQR 204 (361)
T ss_dssp HHHHHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCTTSC
T ss_pred HHHHHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCCCce
Confidence 4556666677 89999999999999999999998766544
No 314
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=98.12 E-value=8.1e-06 Score=62.12 Aligned_cols=27 Identities=33% Similarity=0.386 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFK 47 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~ 47 (174)
..++++|+||||||||+++|++...+.
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~ 150 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNT 150 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCC
Confidence 689999999999999999999876543
No 315
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=98.10 E-value=2.8e-05 Score=64.68 Aligned_cols=35 Identities=20% Similarity=0.207 Sum_probs=29.2
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.-+..+++++ + ..++|+||||+|||||++.+.+..
T Consensus 566 ~~vl~disl~---g--~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 566 EFVPNDLEMA---H--ELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp CCCCEEEEES---S--CEEEEESCSSSSHHHHHHHHHHHH
T ss_pred ceEeeeccCC---C--cEEEEECCCCCChHHHHHHHHhhh
Confidence 3456677777 4 799999999999999999998865
No 316
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.09 E-value=2.6e-06 Score=58.80 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=22.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..++++|++||||||+++.|++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHhc
Confidence 78999999999999999999986
No 317
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.07 E-value=1.8e-06 Score=59.31 Aligned_cols=24 Identities=29% Similarity=0.639 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..++++|++|||||||++.|++..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 689999999999999999998854
No 318
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=98.07 E-value=1.6e-06 Score=68.33 Aligned_cols=41 Identities=17% Similarity=-0.002 Sum_probs=33.0
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRA 50 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~ 50 (174)
...+++++++. ..++|+|+||||||||+++|+|...+..|.
T Consensus 19 ~l~~vsl~i~~---e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 59 (483)
T 3euj_A 19 GFFARTFDFDE---LVTTLSGGNGAGKSTTMAGFVTALIPDLTL 59 (483)
T ss_dssp TEEEEEEECCS---SEEEEECCTTSSHHHHHHHHHHHHCCCTTT
T ss_pred cccceEEEEcc---ceEEEECCCCCcHHHHHHHHhcCCCCCCCE
Confidence 35566777666 688999999999999999999977665553
No 319
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.06 E-value=2.2e-05 Score=53.60 Aligned_cols=25 Identities=24% Similarity=0.340 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
..++++|++|+|||||++++++...
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999999999998654
No 320
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.05 E-value=2.1e-06 Score=60.23 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
...++|+|++|||||||++.|.+..
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~ 30 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTL 30 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3799999999999999999998853
No 321
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.03 E-value=2.7e-06 Score=59.74 Aligned_cols=27 Identities=33% Similarity=0.539 Sum_probs=23.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
+...++|+|+||||||||++.|.+...
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 348999999999999999999988653
No 322
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.02 E-value=3e-06 Score=59.12 Aligned_cols=28 Identities=25% Similarity=0.393 Sum_probs=23.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.+.+ ..++++|++||||||+++.|.+..
T Consensus 3 i~~g--~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 3 NEKG--LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp -CCC--CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCC--CEEEEECCCCCCHHHHHHHHHHhh
Confidence 4445 789999999999999999998865
No 323
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.01 E-value=3.5e-06 Score=58.72 Aligned_cols=35 Identities=20% Similarity=0.301 Sum_probs=22.1
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
-..++++++.+.+ ..|+++|++||||||+.+.|.+
T Consensus 13 ~~~~~~~~~~~~~--~~i~l~G~~GsGKsTl~~~La~ 47 (199)
T 3vaa_A 13 LGTENLYFQSNAM--VRIFLTGYMGAGKTTLGKAFAR 47 (199)
T ss_dssp -----------CC--CEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCceeEecCCC--CEEEEEcCCCCCHHHHHHHHHH
Confidence 3467888888777 8999999999999999999875
No 324
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.01 E-value=1.8e-05 Score=60.37 Aligned_cols=80 Identities=15% Similarity=0.146 Sum_probs=49.7
Q ss_pred eEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCC---------HHHHHHHHHH
Q 030624 59 CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFS---------QEEEAALHSL 129 (174)
Q Consensus 59 ~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~---------~~~~~~l~~l 129 (174)
.....+.+ ++..+.+|||+|... .+..+..++.+++++|||+|.++ .+ ..-.+....+
T Consensus 191 i~~~~~~~-~~~~l~i~Dt~Gq~~-----------~r~~w~~~f~~~~~iIfv~dls~-~dq~l~ed~~~n~~~es~~~~ 257 (362)
T 1zcb_A 191 IHEYDFEI-KNVPFKMVDVGGQRS-----------ERKRWFECFDSVTSILFLVSSSE-FDQVLMEDRQTNRLTESLNIF 257 (362)
T ss_dssp EEEEEEEE-TTEEEEEEEECC------------------CTTSCTTCCEEEEEEETTC-TTCEETTEEEEEHHHHHHHHH
T ss_pred eEEEEeee-CCeEEEEEeccchhh-----------hhhhHHHHhCCCCEEEEEEECcc-ccccccccccccHHHHHHHHH
Confidence 33344445 677899999999876 56667778899999999999984 21 1123333344
Q ss_pred HHHHhhh--hcCcEEEEEeCcCCC
Q 030624 130 QTLFGKK--IFDYMIVVFTGGDEL 151 (174)
Q Consensus 130 ~~~~~~~--~~~~~~iv~tk~D~~ 151 (174)
....... ...|+++++||.|+.
T Consensus 258 ~~i~~~~~~~~~piILv~NK~DL~ 281 (362)
T 1zcb_A 258 ETIVNNRVFSNVSIILFLNKTDLL 281 (362)
T ss_dssp HHHHTCGGGTTSEEEEEEECHHHH
T ss_pred HHHhcchhhCCCCEEEEEEChhhh
Confidence 4443322 235899999999986
No 325
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=98.00 E-value=2.4e-06 Score=65.22 Aligned_cols=40 Identities=20% Similarity=0.102 Sum_probs=30.0
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 48 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~ 48 (174)
..+.++...--..+++|+|+||||||||++.|+|...+..
T Consensus 159 ~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 159 KFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp GGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 3344555551138999999999999999999999765544
No 326
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.99 E-value=1.2e-06 Score=66.38 Aligned_cols=39 Identities=21% Similarity=0.149 Sum_probs=31.8
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 48 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~ 48 (174)
+.++. ++...| .+++++|+||+|||||++.|++...+..
T Consensus 61 ald~l-l~i~~G--q~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 61 AIDGL-LTCGIG--QRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp HHHHH-SCEETT--CEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred EEEee-eeecCC--CEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 34555 677776 9999999999999999999999865443
No 327
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=97.97 E-value=4.2e-06 Score=58.40 Aligned_cols=27 Identities=37% Similarity=0.741 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.+...++|+||+|||||||++.|++..
T Consensus 17 ~~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 17 QGRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 344889999999999999999999764
No 328
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=97.97 E-value=1.7e-06 Score=73.41 Aligned_cols=37 Identities=22% Similarity=0.226 Sum_probs=32.7
Q ss_pred CCcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 5 SAIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..+.++++|+.+.| .+++++|+||||||||++.|++.
T Consensus 448 ~~iL~~vsl~I~~G--e~v~LiGpNGsGKSTLLk~LagG 484 (986)
T 2iw3_A 448 KILLNKTQLRLKRA--RRYGICGPNGCGKSTLMRAIANG 484 (986)
T ss_dssp EEEEEEEEEEEETT--CEEEEECSTTSSHHHHHHHHHHT
T ss_pred EEeEecceEEEcCC--CEEEEECCCCCCHHHHHHHHhCC
Confidence 34577889999998 99999999999999999999953
No 329
>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*
Probab=97.96 E-value=0.00027 Score=55.18 Aligned_cols=127 Identities=17% Similarity=0.132 Sum_probs=67.0
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhC-----------------CcccccccCCCCcceeeEEE----EEEEeC--CcEEE
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILG-----------------RRAFKSRASSSGVTSTCEMQ----RTVLKD--GQVVN 73 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~-----------------~~~~~~~~~~~~~t~~~~~~----~~~~~~--~~~~~ 73 (174)
..+...|+|+|+.++|||+|+|.|++ ...|..+.....+|...-.- ...... +..+.
T Consensus 64 ~~~v~vvsv~G~~~~gks~l~N~ll~~~~~~~~~~w~~~~~~~~~gF~~~~~~~~~TkGIWmw~~p~~~~~~~g~~~~vl 143 (457)
T 4ido_A 64 DKEVVAVSVAGAFRKGKSFLMDFMLRYMYNQESVDWVGDYNEPLTGFSWRGGSERETTGIQIWSEIFLINKPDGKKVAVL 143 (457)
T ss_dssp TSBEEEEEEEEBTTSSHHHHHHHHHHHHHCTTCTTTTCCTTCCCCSSCCCCSSSCCCCSEEEESSCEEEECTTSCEEEEE
T ss_pred CCceEEEEEECCCCCchhHHHHHHHHHhhcccccccccccccCCCCceeCCCCCCcCceEEEecCcccccCCCCCeeEEE
Confidence 34557899999999999999997752 12333332333333332211 011112 23589
Q ss_pred EEeCCCCCCCCCChHHHHHHHHHHH-HhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhh-------hhcCcEEEEE
Q 030624 74 VIDTPGLFDFSAGSEFVGKEIVKCI-GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGK-------KIFDYMIVVF 145 (174)
Q Consensus 74 ~iDtpG~~~~~~~~~~~~~~~~~~~-~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~-------~~~~~~~iv~ 145 (174)
++||.|+.+...+.. ....+...+ ..+ +.+||=.. ..++..+.+.+..+.++... ..++..+.++
T Consensus 144 llDTEG~~d~~~~~~-~d~~ifaLa~LLS----S~~IyN~~--~~i~~~~L~~L~~~tel~~~i~~~~~~~~Fp~f~wlv 216 (457)
T 4ido_A 144 LMDTQGTFDSQSTLR-DSATVFALSTMIS----SIQVYNLS--QNVQEDDLQHLQLFTEYGRLAMEETFLKPFQSLIFLV 216 (457)
T ss_dssp EEEECCBTCTTCCHH-HHHHHHHHHHHHC----SEEEEEEE--SSCCHHHHHHHHHHHHHHHHHSCCCSSCSEEEEEEEE
T ss_pred EEeccCCCCcccCcc-ccHHHHHHHHHHh----hheeeccc--ccCCHHHHHHHHHHHHHHHHHhhhcccccCCceEEEE
Confidence 999999987654422 222222221 122 45555432 25666776777666655321 1123455666
Q ss_pred eCcCC
Q 030624 146 TGGDE 150 (174)
Q Consensus 146 tk~D~ 150 (174)
=-+-+
T Consensus 217 RDf~l 221 (457)
T 4ido_A 217 RDWSF 221 (457)
T ss_dssp ETCCC
T ss_pred ecCCc
Confidence 55543
No 330
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=97.96 E-value=2e-06 Score=67.17 Aligned_cols=40 Identities=18% Similarity=0.067 Sum_probs=32.9
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
+.+++ ++...| .+++|+|+||+|||||++.|++...+..+
T Consensus 147 vld~v-l~i~~G--q~~~IvG~sGsGKSTLl~~Iag~~~~~~G 186 (438)
T 2dpy_A 147 AINAL-LTVGRG--QRMGLFAGSGVGKSVLLGMMARYTRADVI 186 (438)
T ss_dssp HHHHH-SCCBTT--CEEEEEECTTSSHHHHHHHHHHHSCCSEE
T ss_pred EEeee-EEecCC--CEEEEECCCCCCHHHHHHHHhcccCCCeE
Confidence 45666 777777 99999999999999999999998755443
No 331
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.95 E-value=5.1e-06 Score=59.82 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh---CCccccc
Q 030624 20 ERTVVLVGRTGNGKSATGNSIL---GRRAFKS 48 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~---~~~~~~~ 48 (174)
...++|+|++||||||+++.|+ |...+..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~ 58 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLSS 58 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEecH
Confidence 4689999999999999999999 8765543
No 332
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.93 E-value=6.7e-06 Score=55.92 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
..+...++++|++||||||+.+.|.+
T Consensus 5 ~~~g~~i~l~G~~GsGKSTl~~~l~~ 30 (175)
T 1knq_A 5 NHDHHIYVLMGVSGSGKSAVASEVAH 30 (175)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHH
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 33448999999999999999999865
No 333
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=97.91 E-value=6.6e-06 Score=61.49 Aligned_cols=28 Identities=21% Similarity=0.124 Sum_probs=24.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRRAF 46 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~ 46 (174)
+...++|+|+||||||||++.|.+...+
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 3489999999999999999999986543
No 334
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.90 E-value=2.9e-06 Score=58.92 Aligned_cols=28 Identities=29% Similarity=0.270 Sum_probs=24.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
.+++++|+||+|||||++.|++... ..|
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G 29 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG 29 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC
Confidence 4789999999999999999998765 444
No 335
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.89 E-value=8.1e-06 Score=57.34 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
..++++||+||||||+++.|++...
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 7899999999999999999998754
No 336
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.88 E-value=6.8e-06 Score=57.29 Aligned_cols=23 Identities=30% Similarity=0.638 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..++++|++||||||+++.|.+.
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~ 52 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADE 52 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999998753
No 337
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.86 E-value=2.6e-06 Score=67.80 Aligned_cols=36 Identities=25% Similarity=0.244 Sum_probs=28.2
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCccccc
Q 030624 11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKS 48 (174)
Q Consensus 11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~ 48 (174)
+++..+.+ ..++++|+||||||||+++|++...+..
T Consensus 253 l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i~~~~ 288 (511)
T 2oap_1 253 LWLAIEHK--FSAIVVGETASGKTTTLNAIMMFIPPDA 288 (511)
T ss_dssp HHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred HHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhCCCCC
Confidence 33444555 6799999999999999999999875543
No 338
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=97.86 E-value=2.4e-05 Score=60.38 Aligned_cols=80 Identities=15% Similarity=0.140 Sum_probs=54.4
Q ss_pred eEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCC---------CCHHHHHHHHHH
Q 030624 59 CEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSR---------FSQEEEAALHSL 129 (174)
Q Consensus 59 ~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~---------~~~~~~~~l~~l 129 (174)
.....+.+ ++..+.+|||+|... ++..+..++.+++++|||+|.++. ... -.....++
T Consensus 207 i~~~~~~~-~~v~l~iwDtaGQe~-----------~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns-~~e~~~~~ 273 (402)
T 1azs_C 207 IFETKFQV-DKVNFHMFDVGGQRD-----------ERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNR-LQEALNLF 273 (402)
T ss_dssp EEEEEEEE-TTEEEEEEEECCSGG-----------GGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBH-HHHHHHHH
T ss_pred eEEEEeec-CCccceecccchhhh-----------hhhhhHhhccCCCEEEEEEECcccccccccccccch-HHHHHHHH
Confidence 33344445 567899999999886 566677789999999999999840 111 12334444
Q ss_pred HHHHhhh--hcCcEEEEEeCcCCC
Q 030624 130 QTLFGKK--IFDYMIVVFTGGDEL 151 (174)
Q Consensus 130 ~~~~~~~--~~~~~~iv~tk~D~~ 151 (174)
....... ...|++++.||+|+.
T Consensus 274 ~~i~~~~~~~~~piiLvgNK~DL~ 297 (402)
T 1azs_C 274 KSIWNNRWLRTISVILFLNKQDLL 297 (402)
T ss_dssp HHHHTCTTCSSCCEEEEEECHHHH
T ss_pred HHHHhcccCCCCeEEEEEEChhhh
Confidence 4443321 235899999999974
No 339
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.85 E-value=4.8e-06 Score=58.05 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=25.4
Q ss_pred ccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 12 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 12 ~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.+..+.+ ..++++|++||||||+.+.|.+..
T Consensus 19 ~~~~~~g--~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 19 RLLDQKG--CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp HHHTSCC--EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HhcCCCC--eEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444455 899999999999999999998765
No 340
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=97.85 E-value=3.9e-06 Score=68.95 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=29.5
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~ 41 (174)
..++++++++.+ ..++|+|+||||||||++.++
T Consensus 337 ~L~~vsl~I~~G--e~vaIiGpnGsGKSTLl~~i~ 369 (670)
T 3ux8_A 337 NLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL 369 (670)
T ss_dssp TCCSEEEEEETT--SEEEEECSTTSSHHHHHTTTH
T ss_pred ccccceeEecCC--CEEEEEeeCCCCHHHHHHHHH
Confidence 467889999998 999999999999999998764
No 341
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.85 E-value=1.1e-05 Score=57.70 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=22.8
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624 14 TSPSNGERTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 14 ~~~~~~~~~i~i~G~~g~GKStlin~l~ 41 (174)
..+.+ ..++++|+||||||||++.|+
T Consensus 26 gi~~G--~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEG--TTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETT--CEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCC--cEEEEEeCCCCCHHHHHHHHH
Confidence 34555 899999999999999999988
No 342
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=97.82 E-value=8.5e-06 Score=60.75 Aligned_cols=27 Identities=19% Similarity=0.185 Sum_probs=23.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.+...++|+|++|||||||++.|.+..
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 344899999999999999999998853
No 343
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.82 E-value=9.4e-06 Score=55.93 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..++++|++||||||+++.|++
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~ 24 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAA 24 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHhc
Confidence 5789999999999999999986
No 344
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.82 E-value=1.2e-05 Score=58.21 Aligned_cols=30 Identities=20% Similarity=0.353 Sum_probs=25.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHh---CCcccccc
Q 030624 20 ERTVVLVGRTGNGKSATGNSIL---GRRAFKSR 49 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~---~~~~~~~~ 49 (174)
...|+|+|++||||||+.+.|. |...+..|
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g 59 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSG 59 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence 3789999999999999999999 76655443
No 345
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.80 E-value=1.4e-05 Score=54.70 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=25.4
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
++..+.+..+ ..+|+|+||+||||++++|...
T Consensus 18 ~~~~~~~~~g---~~~i~G~NGsGKStll~ai~~~ 49 (182)
T 3kta_A 18 KKVVIPFSKG---FTAIVGANGSGKSNIGDAILFV 49 (182)
T ss_dssp SCEEEECCSS---EEEEEECTTSSHHHHHHHHHHH
T ss_pred ccEEEecCCC---cEEEECCCCCCHHHHHHHHHHH
Confidence 4555666654 7799999999999999998653
No 346
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.80 E-value=1.1e-05 Score=57.14 Aligned_cols=28 Identities=14% Similarity=0.223 Sum_probs=24.0
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.+.+ ..++|+|+||||||||++.|++..
T Consensus 22 i~~G--~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 22 IETQ--AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EESS--EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCC--cEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445 899999999999999999998843
No 347
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.78 E-value=9.7e-06 Score=62.94 Aligned_cols=27 Identities=30% Similarity=0.309 Sum_probs=23.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFK 47 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~ 47 (174)
..++|+|+||||||||+++|++...+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 689999999999999999999866443
No 348
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.76 E-value=7e-06 Score=60.68 Aligned_cols=39 Identities=15% Similarity=0.079 Sum_probs=31.8
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcccc
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRAFK 47 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~ 47 (174)
..+++.+..+.+ ..++|+|+||+|||||++.|++...+.
T Consensus 24 ~Ld~i~~~l~~G--~~~~i~G~~G~GKTTl~~~ia~~~~~~ 62 (296)
T 1cr0_A 24 GINDKTLGARGG--EVIMVTSGSGMGKSTFVRQQALQWGTA 62 (296)
T ss_dssp THHHHHCSBCTT--CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCCCC--eEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 355667778887 899999999999999999988765443
No 349
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.75 E-value=1.3e-05 Score=61.29 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=23.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAF 46 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~ 46 (174)
..++++|+||||||||++.|++...+
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 78999999999999999999987654
No 350
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.75 E-value=2.1e-05 Score=56.06 Aligned_cols=29 Identities=24% Similarity=0.257 Sum_probs=24.7
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 13 LTSPSNGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.+.+.+ ..++|.|++||||||+++.|.+.
T Consensus 15 ~~~~~g--~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 15 AEGTQP--FTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTTCCC--EEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCCc--eEEEEECCCCCCHHHHHHHHHhc
Confidence 344555 89999999999999999999875
No 351
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.72 E-value=7e-06 Score=65.59 Aligned_cols=39 Identities=23% Similarity=0.221 Sum_probs=32.0
Q ss_pred CCccccccc-CCCCCCceEEEEEcCCCCCHHHHHHH--HhCCcc
Q 030624 5 SAIDDDWEL-TSPSNGERTVVLVGRTGNGKSATGNS--ILGRRA 45 (174)
Q Consensus 5 ~~~~~~~~~-~~~~~~~~~i~i~G~~g~GKStlin~--l~~~~~ 45 (174)
....+++++ ..+.+ ..++++|+||||||||++. +.|...
T Consensus 25 ~~~Ld~i~~G~i~~G--e~~~l~G~nGsGKSTL~~~~ll~Gl~~ 66 (525)
T 1tf7_A 25 IEGFDDISHGGLPIG--RSTLVSGTSGTGKTLFSIQFLYNGIIE 66 (525)
T ss_dssp CTTHHHHTTSSEETT--SEEEEEESTTSSHHHHHHHHHHHHHHH
T ss_pred chhHHHhcCCCCCCC--eEEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence 345677888 88888 9999999999999999999 456543
No 352
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.71 E-value=1.5e-05 Score=54.01 Aligned_cols=23 Identities=39% Similarity=0.702 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..|+++|++||||||+.+.|.+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~ 27 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQ 27 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999999874
No 353
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=97.70 E-value=0.00081 Score=56.99 Aligned_cols=30 Identities=23% Similarity=0.263 Sum_probs=26.7
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHH
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGN 38 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin 38 (174)
..++++++++.+ ..++|+|+||||||||++
T Consensus 599 ~Lk~Vsl~I~~G--eiv~I~G~SGSGKSTLl~ 628 (916)
T 3pih_A 599 NLKNIDVEIPLG--VFVCVTGVSGSGKSSLVM 628 (916)
T ss_dssp TCCSEEEEEESS--SEEEEECSTTSSHHHHHH
T ss_pred cccccceEEcCC--cEEEEEccCCCChhhhHH
Confidence 367888999999 999999999999999973
No 354
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.68 E-value=8e-06 Score=59.93 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=26.0
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.+++.+..+.+ ++++|++|+|||||+++|++..
T Consensus 36 l~~~~l~~~~G----vlL~Gp~GtGKTtLakala~~~ 68 (274)
T 2x8a_A 36 FKALGLVTPAG----VLLAGPPGCGKTLLAKAVANES 68 (274)
T ss_dssp HHHTTCCCCSE----EEEESSTTSCHHHHHHHHHHHT
T ss_pred HHHcCCCCCCe----EEEECCCCCcHHHHHHHHHHHc
Confidence 34455565554 8999999999999999999753
No 355
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=97.65 E-value=7.5e-05 Score=51.82 Aligned_cols=82 Identities=7% Similarity=0.013 Sum_probs=49.3
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCc
Q 030624 69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGG 148 (174)
Q Consensus 69 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~ 148 (174)
...+.++|+|+... . .....+.. +|.+++++..+ ..+......++.+.+........++.+|+|++
T Consensus 75 ~yD~viiD~~~~~~-----~----~~~~~l~~----ad~viiv~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~vv~N~~ 140 (206)
T 4dzz_A 75 DYDFAIVDGAGSLS-----V----ITSAAVMV----SDLVIIPVTPS-PLDFSAAGSVVTVLEAQAYSRKVEARFLITRK 140 (206)
T ss_dssp TSSEEEEECCSSSS-----H----HHHHHHHH----CSEEEEEECSC-TTTHHHHHHHHHHHTTSCGGGCCEEEEEECSB
T ss_pred CCCEEEEECCCCCC-----H----HHHHHHHH----CCEEEEEecCC-HHHHHHHHHHHHHHHHHHhCCCCcEEEEEecc
Confidence 35689999998764 1 12223333 48899999887 44433466666666542212223568999999
Q ss_pred CCCCCChhhHHHHhcc
Q 030624 149 DELEDNDETLEDYLGR 164 (174)
Q Consensus 149 D~~~~~~~~~~~~~~~ 164 (174)
|........+.+++++
T Consensus 141 ~~~~~~~~~~~~~l~~ 156 (206)
T 4dzz_A 141 IEMATMLNVLKESIKD 156 (206)
T ss_dssp CTTEEEEHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHH
Confidence 9654332445666554
No 356
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.62 E-value=3.2e-05 Score=57.94 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=22.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
-+.++|+|++|||||||+|.|++..
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSC
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhc
Confidence 3688999999999999999999864
No 357
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.62 E-value=5.1e-05 Score=52.98 Aligned_cols=25 Identities=16% Similarity=0.234 Sum_probs=22.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
...++++|++||||||+.+.|.+..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3889999999999999999999863
No 358
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.61 E-value=7.3e-06 Score=59.36 Aligned_cols=34 Identities=26% Similarity=0.369 Sum_probs=28.9
Q ss_pred cccccccCCCC---CCceEEEEEcCCCCCHHHHHHHHhC
Q 030624 7 IDDDWELTSPS---NGERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 7 ~~~~~~~~~~~---~~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
+.++++++... + ..|+|+|++||||||+.+.|.+
T Consensus 34 ~l~~~~~~i~~~l~g--~~i~l~G~~GsGKSTl~~~La~ 70 (250)
T 3nwj_A 34 ILKKKAEEVKPYLNG--RSMYLVGMMGSGKTTVGKIMAR 70 (250)
T ss_dssp HHHHHHHTTHHHHTT--CCEEEECSTTSCHHHHHHHHHH
T ss_pred hhhhhhhhhhhhcCC--CEEEEECCCCCCHHHHHHHHHH
Confidence 45667777777 6 7999999999999999999875
No 359
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=97.60 E-value=1.2e-05 Score=54.96 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAF 46 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~ 46 (174)
..++|+|++|||||||++.|++...+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57899999999999999999987644
No 360
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.60 E-value=2.4e-05 Score=59.95 Aligned_cols=33 Identities=18% Similarity=0.261 Sum_probs=28.0
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.++++..+.+ ..++++|++|+|||||++.|++.
T Consensus 160 ~~~~~~i~~~--~~i~l~G~~GsGKSTl~~~l~~~ 192 (377)
T 1svm_A 160 KCMVYNIPKK--RYWLFKGPIDSGKTTLAAALLEL 192 (377)
T ss_dssp HHHHHCCTTC--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred HhcccccCCC--CEEEEECCCCCCHHHHHHHHHhh
Confidence 4456677777 89999999999999999999864
No 361
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=97.60 E-value=4.1e-05 Score=57.37 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=22.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.....++|+|++|||||||++.|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~l 115 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKAL 115 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34578999999999999999988654
No 362
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.59 E-value=3.4e-05 Score=53.86 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.7
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
...++++|++||||||+.+.|....
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3689999999999999999997643
No 363
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.59 E-value=4.4e-05 Score=53.26 Aligned_cols=22 Identities=32% Similarity=0.418 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..++++|++||||||+.+.|.+
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
No 364
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=97.58 E-value=2.1e-05 Score=59.99 Aligned_cols=29 Identities=28% Similarity=0.350 Sum_probs=23.3
Q ss_pred ccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624 10 DWELTSPSNGERTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~ 41 (174)
+..+.++.+ ..+|+|+|||||||++++|+
T Consensus 16 ~~~i~~~~g---~~~i~G~NGaGKTTll~ai~ 44 (365)
T 3qf7_A 16 NVDIEFQSG---ITVVEGPNGAGKSSLFEAIS 44 (365)
T ss_dssp EEEEECCSE---EEEEECCTTSSHHHHHHHHH
T ss_pred ceEEecCCC---eEEEECCCCCCHHHHHHHHH
Confidence 445666654 56799999999999999987
No 365
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=97.58 E-value=4.6e-05 Score=53.13 Aligned_cols=24 Identities=21% Similarity=0.332 Sum_probs=21.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
+...++++|++||||||+++.|.+
T Consensus 21 ~~~~i~i~G~~GsGKstl~~~l~~ 44 (201)
T 1rz3_A 21 GRLVLGIDGLSRSGKTTLANQLSQ 44 (201)
T ss_dssp SSEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 348999999999999999999875
No 366
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=0.00013 Score=54.90 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..+++.|++|+||||+++.+++
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~ 58 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLE 58 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 3489999999999999999988
No 367
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=97.57 E-value=0.00011 Score=55.83 Aligned_cols=72 Identities=11% Similarity=0.091 Sum_probs=48.1
Q ss_pred CcEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCC-------CCCCHH-HHHHHHHHHHHHhhh--hc
Q 030624 69 GQVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVR-------SRFSQE-EEAALHSLQTLFGKK--IF 138 (174)
Q Consensus 69 ~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~-------~~~~~~-~~~~l~~l~~~~~~~--~~ 138 (174)
...+.+|||+|... ++..+..++.+++++++|+|.+ +.-+.. -.....++.+..... ..
T Consensus 182 ~v~l~iwDtaGQe~-----------~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~ 250 (354)
T 2xtz_A 182 GEVYRLFDVGGQRN-----------ERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK 250 (354)
T ss_dssp --EEEEEEECCSTT-----------GGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS
T ss_pred ceeeEEEECCCchh-----------hhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC
Confidence 35789999999987 5666677899999999999986 111111 133334444443321 23
Q ss_pred CcEEEEEeCcCCC
Q 030624 139 DYMIVVFTGGDEL 151 (174)
Q Consensus 139 ~~~~iv~tk~D~~ 151 (174)
.|++++.||+|+.
T Consensus 251 ~piiLvgNK~DL~ 263 (354)
T 2xtz_A 251 TSFMLFLNKFDIF 263 (354)
T ss_dssp CEEEEEEECHHHH
T ss_pred CeEEEEEECcchh
Confidence 5899999999984
No 368
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.57 E-value=5.8e-05 Score=51.84 Aligned_cols=31 Identities=19% Similarity=0.454 Sum_probs=23.7
Q ss_pred cccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 11 WELTSPSNGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 11 ~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
++++.+.+ ..|+++|++||||||+.+.|...
T Consensus 3 ~~~~~~~~--~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 3 GSMEQPKG--INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ---CCCSS--CEEEEECSTTSSHHHHHHHHHHH
T ss_pred cCcCCCCC--CEEEEECCCCCCHHHHHHHHHHh
Confidence 34555555 88999999999999999998764
No 369
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=97.56 E-value=2.7e-05 Score=53.84 Aligned_cols=24 Identities=29% Similarity=0.544 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
+-|+|+||+|||||||++.|+...
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 347899999999999999998654
No 370
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.56 E-value=3.8e-05 Score=54.25 Aligned_cols=23 Identities=17% Similarity=0.362 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.+|+++|++||||||+.+.|.+.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~ 28 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEA 28 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 371
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.54 E-value=3.8e-05 Score=53.44 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
.+|+|+|++||||||+.+.|.+
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH
Confidence 4799999999999999999976
No 372
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.54 E-value=3.4e-05 Score=55.60 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=24.2
Q ss_pred ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
++++..+.+ ++++|++|+|||||+++|++..
T Consensus 43 ~~~~~~~~g----~ll~G~~G~GKTtl~~~i~~~~ 73 (254)
T 1ixz_A 43 EMGARIPKG----VLLVGPPGVGKTHLARAVAGEA 73 (254)
T ss_dssp HTTCCCCSE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred HcCCCCCCe----EEEECCCCCCHHHHHHHHHHHh
Confidence 344444443 8999999999999999998753
No 373
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=97.53 E-value=3.1e-05 Score=51.57 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=23.0
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
...++++|++|+|||||++++.+...
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~ 61 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQAL 61 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999998653
No 374
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=97.51 E-value=1.1e-05 Score=62.44 Aligned_cols=33 Identities=24% Similarity=0.211 Sum_probs=26.6
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
..+++++++..+ .++|+|+||||||||+++|.+
T Consensus 50 ~l~~v~l~~~~G---~~~lvG~NGaGKStLl~aI~~ 82 (415)
T 4aby_A 50 TITQLELELGGG---FCAFTGETGAGKSIIVDALGL 82 (415)
T ss_dssp TEEEEEEECCSS---EEEEEESHHHHHHHHTHHHHH
T ss_pred ceeeEEEecCCC---cEEEECCCCCCHHHHHHHHHH
Confidence 345667777665 889999999999999998854
No 375
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.49 E-value=8.2e-05 Score=49.47 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~ 41 (174)
...+|+|+||+||||++.+|.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 467999999999999999975
No 376
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.48 E-value=4.7e-05 Score=55.70 Aligned_cols=31 Identities=29% Similarity=0.517 Sum_probs=24.3
Q ss_pred ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
++++..+.+ ++++|++|+|||||+++|++..
T Consensus 67 ~~~~~~~~g----vll~Gp~GtGKTtl~~~i~~~~ 97 (278)
T 1iy2_A 67 EMGARIPKG----VLLVGPPGVGKTHLARAVAGEA 97 (278)
T ss_dssp HTTCCCCCE----EEEECCTTSSHHHHHHHHHHHT
T ss_pred HcCCCCCCe----EEEECCCcChHHHHHHHHHHHc
Confidence 344444443 8999999999999999998754
No 377
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.47 E-value=6.8e-05 Score=56.18 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=25.5
Q ss_pred CcccccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624 6 AIDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 6 ~~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~ 41 (174)
++.++..+.+..+ ..+|+|+||+|||||+++|.
T Consensus 13 ~~~~~~~l~~~~g---~~~i~G~NGsGKS~ll~ai~ 45 (322)
T 1e69_A 13 SFGRPSLIGFSDR---VTAIVGPNGSGKSNIIDAIK 45 (322)
T ss_dssp TBCSCEEEECCSS---EEEEECCTTTCSTHHHHHHH
T ss_pred eecCCeEEecCCC---cEEEECCCCCcHHHHHHHHH
Confidence 3334455666554 78999999999999999987
No 378
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=97.47 E-value=6e-05 Score=51.52 Aligned_cols=23 Identities=13% Similarity=0.289 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..++++|++|+|||||++.|++.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHh
Confidence 67899999999999999999875
No 379
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.46 E-value=0.0011 Score=51.69 Aligned_cols=23 Identities=26% Similarity=0.523 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
+-+++.||+|+|||+|.+++++.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e 238 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAAT 238 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 67999999999999999999874
No 380
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=97.45 E-value=8.7e-05 Score=54.86 Aligned_cols=28 Identities=25% Similarity=0.299 Sum_probs=23.4
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..+...|+|+|++|||||||.+.|.+..
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455899999999999999999887643
No 381
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.44 E-value=9e-05 Score=53.47 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=21.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
......|+|.|++||||||+.+.|..
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~ 44 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQ 44 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHH
Confidence 33447899999999999999988855
No 382
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.42 E-value=0.0013 Score=51.20 Aligned_cols=23 Identities=30% Similarity=0.502 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
+-+++.||+|+|||+|.+++++.
T Consensus 207 rGiLL~GPPGtGKT~lakAiA~~ 229 (428)
T 4b4t_K 207 RGVLLYGPPGTGKTMLVKAVANS 229 (428)
T ss_dssp CEEEEESCTTTTHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56999999999999999999864
No 383
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.42 E-value=6.2e-05 Score=53.13 Aligned_cols=29 Identities=21% Similarity=0.378 Sum_probs=23.9
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 14 TSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..+.+ ..++++|++|+|||||++.|++..
T Consensus 19 gi~~G--~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 19 GIPQG--FFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp SEETT--CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCcCC--CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34555 789999999999999999988543
No 384
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=97.41 E-value=8.7e-06 Score=58.10 Aligned_cols=29 Identities=24% Similarity=0.210 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCcccccc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRRAFKSR 49 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~ 49 (174)
..++|+||||||||||+++|++...+..|
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 35689999999999999999987665544
No 385
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.40 E-value=6.3e-05 Score=52.31 Aligned_cols=23 Identities=35% Similarity=0.683 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..|+|+|++||||||+.+.|.+.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~ 41 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEA 41 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999999998643
No 386
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.0017 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
+-|++.||+|+|||+|.+++++.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e 239 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQ 239 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHH
T ss_pred CCCceECCCCchHHHHHHHHHHH
Confidence 66999999999999999999875
No 387
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.39 E-value=0.0001 Score=49.58 Aligned_cols=23 Identities=17% Similarity=0.144 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..|+++|++||||||+.+.|...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~ 24 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKE 24 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998753
No 388
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.38 E-value=0.0017 Score=46.64 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.-+++.|++|+|||++.+++...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~ 62 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATE 62 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 56899999999999999999863
No 389
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=97.36 E-value=0.00012 Score=55.71 Aligned_cols=32 Identities=19% Similarity=0.159 Sum_probs=26.1
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
..+.++.++.+ ..+++|+||+||||++++|..
T Consensus 17 ~~~~~~~~~~g---~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 17 LAPGTLNFPEG---VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CCSEEEECCSE---EEEEECCTTSSHHHHHHHHHH
T ss_pred eeeeEEEEcCC---eEEEECCCCCChhHHHHHHHH
Confidence 35566777664 789999999999999999874
No 390
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.36 E-value=0.00012 Score=49.30 Aligned_cols=20 Identities=25% Similarity=0.579 Sum_probs=18.7
Q ss_pred eEEEEEcCCCCCHHHHHHHH
Q 030624 21 RTVVLVGRTGNGKSATGNSI 40 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l 40 (174)
+.|+++|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 47899999999999999998
No 391
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.35 E-value=0.002 Score=49.67 Aligned_cols=23 Identities=26% Similarity=0.518 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
+-+++.||+|+|||+|.+++++.
T Consensus 183 rGvLL~GPPGTGKTllAkAiA~e 205 (405)
T 4b4t_J 183 KGVILYGPPGTGKTLLARAVAHH 205 (405)
T ss_dssp CCEEEESCSSSSHHHHHHHHHHH
T ss_pred CceEEeCCCCCCHHHHHHHHHHh
Confidence 56899999999999999999874
No 392
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.33 E-value=0.00015 Score=49.53 Aligned_cols=23 Identities=22% Similarity=0.527 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~ 42 (174)
...|+++|++||||||+.+.|..
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999873
No 393
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.33 E-value=0.00015 Score=49.09 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999986
No 394
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.32 E-value=0.00013 Score=49.63 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
...++++|++||||||+.+.|.+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~ 28 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEY 28 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 378999999999999999999874
No 395
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.32 E-value=0.00062 Score=53.04 Aligned_cols=23 Identities=17% Similarity=0.414 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
+-+++.||+|+|||+|.+++++.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e 238 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQ 238 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHH
Confidence 67999999999999999999874
No 396
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=97.32 E-value=5.9e-05 Score=64.04 Aligned_cols=33 Identities=27% Similarity=0.322 Sum_probs=29.6
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~ 41 (174)
..++++++++.| ..++|+|+||||||||++.|+
T Consensus 657 ~Lk~Vsl~I~~G--eivaI~G~nGSGKSTLl~~il 689 (993)
T 2ygr_A 657 NLRGIDVSFPLG--VLTSVTGVSGSGKSTLVNDIL 689 (993)
T ss_dssp TCCSEEEEEESS--SEEEEECSTTSSHHHHHTTTH
T ss_pred cccCceEEECCC--CEEEEEcCCCCCHHHHHHHHH
Confidence 467889999999 999999999999999999864
No 397
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.31 E-value=0.00022 Score=48.82 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=22.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
+...|+++|.+||||||+.+.|....
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l 37 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLL 37 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34889999999999999999987643
No 398
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.29 E-value=0.0012 Score=48.04 Aligned_cols=23 Identities=22% Similarity=0.504 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..+++.|++|+|||++++++.+.
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~ 74 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATE 74 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHH
Confidence 56999999999999999999764
No 399
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.29 E-value=0.0014 Score=51.28 Aligned_cols=23 Identities=26% Similarity=0.592 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
+-|++.||+|+|||+|.+++++.
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e 266 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANR 266 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHH
T ss_pred CceEeeCCCCCcHHHHHHHHHhc
Confidence 67999999999999999999874
No 400
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.29 E-value=0.0002 Score=49.90 Aligned_cols=25 Identities=20% Similarity=0.311 Sum_probs=21.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
+...|+++|.+||||||+.+.|...
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3478999999999999999998753
No 401
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.29 E-value=0.00017 Score=48.92 Aligned_cols=23 Identities=26% Similarity=0.406 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..|+++|++||||||+.+.|...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~ 26 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSV 26 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999864
No 402
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.28 E-value=0.00017 Score=49.37 Aligned_cols=22 Identities=23% Similarity=0.483 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|++.|++||||||+.+.|..
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~ 25 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMD 25 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999865
No 403
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=97.25 E-value=0.00021 Score=49.96 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~ 41 (174)
...+|+|+||+||||++.+|.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHH
Confidence 477899999999999999864
No 404
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.23 E-value=0.0002 Score=49.56 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 030624 22 TVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~ 42 (174)
.|+++|++||||||+.+.|..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~ 22 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISK 22 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHH
Confidence 689999999999999999876
No 405
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.23 E-value=0.00017 Score=50.47 Aligned_cols=26 Identities=12% Similarity=-0.019 Sum_probs=22.9
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
.+.+ ..++++|++|+|||||++.+++
T Consensus 17 i~~G--~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 17 FAPG--VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp BCTT--SEEEEECSTTSSHHHHHHHHHH
T ss_pred CcCC--EEEEEECCCCCCHHHHHHHHHH
Confidence 4455 7899999999999999999987
No 406
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.22 E-value=0.00024 Score=49.13 Aligned_cols=26 Identities=19% Similarity=0.289 Sum_probs=22.4
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
++...|+|+|++||||||+.+.|...
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC
Confidence 34478999999999999999998864
No 407
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.22 E-value=0.00022 Score=48.85 Aligned_cols=22 Identities=14% Similarity=0.421 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~ 27 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALAT 27 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 408
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=97.22 E-value=5.9e-05 Score=63.87 Aligned_cols=33 Identities=27% Similarity=0.356 Sum_probs=29.6
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~ 41 (174)
..++++++++.| ..++|+|+||||||||++.++
T Consensus 639 ~Lk~Vsl~I~~G--eiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 639 NLKNVSVKIPLG--TFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp SCCSEEEEEESS--SEEECCBCTTSSHHHHHTTTH
T ss_pred ccccceEEEcCC--CEEEEEcCCCCCHHHHHHHHH
Confidence 467889999999 999999999999999999864
No 409
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.22 E-value=0.00027 Score=52.13 Aligned_cols=26 Identities=23% Similarity=0.460 Sum_probs=22.1
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624 17 SNGERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
......++++|++||||||+.+.|..
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~ 55 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFE 55 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 33457899999999999999999864
No 410
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=97.19 E-value=0.00016 Score=54.46 Aligned_cols=24 Identities=29% Similarity=0.418 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..++++||+|+|||||++.|++..
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 468999999999999999998864
No 411
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.19 E-value=0.00026 Score=48.12 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..++++|++|||||||++.|+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~ 27 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAA 27 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 68999999999999999998764
No 412
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.18 E-value=0.00025 Score=48.41 Aligned_cols=22 Identities=27% Similarity=0.608 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|++||||||+.+.|..
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~ 27 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAK 27 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
No 413
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.17 E-value=0.00025 Score=48.50 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..|++.|++||||||+.+.|...
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~ 24 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEI 24 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998753
No 414
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.17 E-value=0.00034 Score=49.85 Aligned_cols=33 Identities=21% Similarity=0.247 Sum_probs=23.2
Q ss_pred cccCCC-CCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 11 WELTSP-SNGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 11 ~~~~~~-~~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.+++.. ......|++.|++||||||+++.|...
T Consensus 16 ~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~ 49 (229)
T 4eaq_A 16 ENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHR 49 (229)
T ss_dssp ----CCCCCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 344443 223488999999999999999998764
No 415
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.17 E-value=0.0002 Score=50.87 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..++++|++|+|||||+..|++.
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHH
Confidence 78999999999999999999873
No 416
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.17 E-value=0.00036 Score=48.37 Aligned_cols=24 Identities=17% Similarity=0.404 Sum_probs=21.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
....|+++|++||||||+.+.|..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~ 37 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVK 37 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999988864
No 417
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=97.16 E-value=0.0003 Score=48.87 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..|++.|++||||||+.+.|...
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~ 27 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDW 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 78999999999999999998753
No 418
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.16 E-value=0.00025 Score=49.65 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 030624 22 TVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~ 42 (174)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999854
No 419
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.16 E-value=0.0003 Score=48.22 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=20.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~ 42 (174)
...|+++|++||||||+.+.|..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999988754
No 420
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.15 E-value=0.00036 Score=48.34 Aligned_cols=24 Identities=25% Similarity=0.446 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
....|+++|++||||||+.+.|..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~ 42 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAE 42 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH
Confidence 346899999999999999998864
No 421
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=97.15 E-value=0.00029 Score=53.13 Aligned_cols=21 Identities=33% Similarity=0.615 Sum_probs=18.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHh
Q 030624 21 RTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~ 41 (174)
...+|+|+||+||||++.+|+
T Consensus 24 ~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 24 GINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp EEEEEECCTTSSHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHH
Confidence 466899999999999999874
No 422
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.14 E-value=0.0003 Score=50.89 Aligned_cols=23 Identities=22% Similarity=0.228 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..++|+|++||||||+.+.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~ 24 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQE 24 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhc
Confidence 46899999999999999998753
No 423
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=97.13 E-value=4.9e-05 Score=63.73 Aligned_cols=34 Identities=21% Similarity=0.319 Sum_probs=29.7
Q ss_pred cccccccCCCCCCceEEEEEcCCCCCHHHHHHH-HhC
Q 030624 7 IDDDWELTSPSNGERTVVLVGRTGNGKSATGNS-ILG 42 (174)
Q Consensus 7 ~~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~-l~~ 42 (174)
..++++++++.+ ..++|+|+||||||||++. |++
T Consensus 512 ~L~~vsl~i~~G--eiv~I~G~nGSGKSTLl~~~L~g 546 (842)
T 2vf7_A 512 NLDNLDVRFPLG--VMTSVTGVSGSGKSTLVSQALVD 546 (842)
T ss_dssp TEEEEEEEEESS--SEEEEECCTTSSHHHHCCCCCHH
T ss_pred ccccceEEEcCC--CEEEEEcCCCcCHHHHHHHHHHH
Confidence 357888999999 9999999999999999996 553
No 424
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=97.13 E-value=0.00022 Score=55.48 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
...+|+|+||+|||||+++|.+..
T Consensus 27 ~~~~i~G~nG~GKstll~ai~~~~ 50 (430)
T 1w1w_A 27 NFTSIIGPNGSGKSNMMDAISFVL 50 (430)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhh
Confidence 688999999999999999987644
No 425
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.13 E-value=0.00032 Score=48.55 Aligned_cols=23 Identities=22% Similarity=0.339 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..|+++|++||||||+.+.|...
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~ 27 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMES 27 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999999865
No 426
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.12 E-value=0.00029 Score=49.35 Aligned_cols=21 Identities=38% Similarity=0.718 Sum_probs=19.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 030624 22 TVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~ 42 (174)
+|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
No 427
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.11 E-value=0.00023 Score=52.03 Aligned_cols=23 Identities=26% Similarity=0.291 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..++|+|++|+|||||+..+++.
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHH
Confidence 78999999999999999988863
No 428
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.11 E-value=0.00033 Score=48.14 Aligned_cols=22 Identities=27% Similarity=0.545 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~ 31 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQ 31 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 429
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.10 E-value=0.00037 Score=48.93 Aligned_cols=22 Identities=36% Similarity=0.539 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+|+|++||||||+.+.|..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999875
No 430
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.09 E-value=0.00038 Score=47.31 Aligned_cols=22 Identities=27% Similarity=0.601 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|++||||||+.+.|..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~ 33 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELAS 33 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEEeCCCCCHHHHHHHHHH
Confidence 6799999999999999999874
No 431
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.09 E-value=0.00028 Score=47.80 Aligned_cols=22 Identities=27% Similarity=0.588 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
.+|+++|++||||||+.+.|..
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~ 26 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAK 26 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHH
Confidence 3689999999999999999865
No 432
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.06 E-value=0.0004 Score=48.88 Aligned_cols=22 Identities=27% Similarity=0.505 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|++||||||+.+.|..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~ 26 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQE 26 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999998864
No 433
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.05 E-value=0.00039 Score=48.50 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|++||||||+.+.|..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~ 31 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVE 31 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999999874
No 434
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.04 E-value=0.00014 Score=55.21 Aligned_cols=31 Identities=13% Similarity=0.134 Sum_probs=26.2
Q ss_pred ccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 12 ELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 12 ~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
...++.+ ..++|+|++|+|||||++.+++..
T Consensus 125 ~ggi~~G--~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 125 GGGIETQ--AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp TSSEESS--EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCCCCC--eEEEEECCCCCCHHHHHHHHHHHh
Confidence 3456666 899999999999999999998764
No 435
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.04 E-value=0.00045 Score=51.22 Aligned_cols=66 Identities=12% Similarity=0.011 Sum_probs=43.8
Q ss_pred cEEEEEeCCCCCCCCCChHHHHHHHHHHHHhccCCceEEEEEEeCCCCC-CHHH-HHHHHHHHHHHhhhhcCcEEEEEeC
Q 030624 70 QVVNVIDTPGLFDFSAGSEFVGKEIVKCIGMAKDGIHAVLVVFSVRSRF-SQEE-EAALHSLQTLFGKKIFDYMIVVFTG 147 (174)
Q Consensus 70 ~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~~~~~~~-~~~~-~~~l~~l~~~~~~~~~~~~~iv~tk 147 (174)
..+.+||+ ..+.. ...+.++..+|++++|+|++++. +... ..|+..+.. . ..|+++|+||
T Consensus 63 ~~~~iwD~--qer~~-----------~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~--~~piilv~NK 124 (301)
T 1u0l_A 63 GSGVIENV--LHRKN-----------LLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---N--ELETVMVINK 124 (301)
T ss_dssp SSEEEEEE--CCCSC-----------EETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---T--TCEEEEEECC
T ss_pred CeEEEEEE--ccccc-----------eeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---C--CCCEEEEEeH
Confidence 47899999 44321 22224678899999999998554 3332 445544433 1 2689999999
Q ss_pred cCCCCC
Q 030624 148 GDELED 153 (174)
Q Consensus 148 ~D~~~~ 153 (174)
+|+...
T Consensus 125 ~DL~~~ 130 (301)
T 1u0l_A 125 MDLYDE 130 (301)
T ss_dssp GGGCCH
T ss_pred HHcCCc
Confidence 999754
No 436
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.04 E-value=0.0096 Score=45.05 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.++|.|++|+|||||++.+.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999999998754
No 437
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.04 E-value=0.00031 Score=50.66 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 18 NGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.....++++|++||||||+.+.|...
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~ 55 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKE 55 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 33478999999999999999998754
No 438
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.03 E-value=0.00038 Score=49.23 Aligned_cols=22 Identities=27% Similarity=0.495 Sum_probs=20.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+|+|++||||||+.+.|..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~ 29 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITT 29 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999863
No 439
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.02 E-value=0.00048 Score=49.44 Aligned_cols=24 Identities=17% Similarity=0.390 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
+..+|+++|++||||||+.+.|..
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999864
No 440
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=97.02 E-value=0.0002 Score=57.52 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
...++|+|++|||||||++.|.+...
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 38999999999999999999988653
No 441
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.01 E-value=0.00041 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..|+++|++||||||+.+.|.+..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l 49 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQL 49 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 789999999999999999987643
No 442
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=97.01 E-value=0.00015 Score=50.71 Aligned_cols=22 Identities=23% Similarity=0.410 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 030624 22 TVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~ 43 (174)
.|+|.|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~ 23 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGA 23 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHH
Confidence 6899999999999999998764
No 443
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.01 E-value=0.00046 Score=46.25 Aligned_cols=21 Identities=29% Similarity=0.450 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 030624 22 TVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~ 42 (174)
+|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSR 22 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 444
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=97.00 E-value=0.0075 Score=45.01 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.-+++.|++|+|||+|.+++.+.
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~ 68 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATE 68 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHH
Confidence 67999999999999999999864
No 445
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.00 E-value=0.00067 Score=46.34 Aligned_cols=22 Identities=27% Similarity=0.528 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|++||||||+.+.|..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~ 28 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 446
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=96.99 E-value=0.00032 Score=47.72 Aligned_cols=23 Identities=22% Similarity=0.349 Sum_probs=16.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~ 42 (174)
...|+++|.+||||||+.+.|..
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~ 27 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHE 27 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 447
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=96.99 E-value=0.0047 Score=48.74 Aligned_cols=22 Identities=32% Similarity=0.662 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 030624 22 TVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~ 43 (174)
-++++|++|+|||+|++++.+.
T Consensus 51 gvLL~GppGtGKT~Laraia~~ 72 (476)
T 2ce7_A 51 GILLVGPPGTGKTLLARAVAGE 72 (476)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999999874
No 448
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.98 E-value=0.0005 Score=49.14 Aligned_cols=22 Identities=27% Similarity=0.431 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..++|.|++||||||+.+.|..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~ 31 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLAR 31 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999873
No 449
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.97 E-value=0.00049 Score=47.28 Aligned_cols=22 Identities=23% Similarity=0.277 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 030624 22 TVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~ 43 (174)
.|++.|+.||||||+.+.|...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~ 23 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQY 23 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998753
No 450
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=96.96 E-value=0.0005 Score=47.30 Aligned_cols=22 Identities=18% Similarity=0.576 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|++||||||+.+.|..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~ 34 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVE 34 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999998864
No 451
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=96.95 E-value=0.00043 Score=48.78 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+|+|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~ 27 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKT 27 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6799999999999999999864
No 452
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.94 E-value=0.00054 Score=46.90 Aligned_cols=21 Identities=19% Similarity=0.461 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 030624 22 TVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~ 42 (174)
.|+++|.+||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~ 22 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYE 22 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999865
No 453
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.93 E-value=0.00063 Score=48.47 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=21.2
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
+..+|+|+|++||||||+.+.|.+
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHH
Confidence 347899999999999999999875
No 454
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.93 E-value=0.00052 Score=48.07 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 030624 22 TVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~ 42 (174)
+|+++|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 455
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.92 E-value=0.00036 Score=52.85 Aligned_cols=34 Identities=26% Similarity=0.297 Sum_probs=27.1
Q ss_pred ccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 10 DWELTSPSNGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.+++..+.+....++++|++|+||||+.+.|++.
T Consensus 14 ~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~ 47 (359)
T 2ga8_A 14 LLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQI 47 (359)
T ss_dssp HHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHH
Confidence 3445566676677999999999999999987764
No 456
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.91 E-value=0.00048 Score=46.97 Aligned_cols=22 Identities=41% Similarity=0.626 Sum_probs=19.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
.+|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAK 24 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999988854
No 457
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.91 E-value=0.00056 Score=48.05 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..+++.|++|+||||+++.+....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999987643
No 458
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.91 E-value=0.00068 Score=49.11 Aligned_cols=22 Identities=27% Similarity=0.442 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|.+||||||+.+.|..
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~ 26 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAK 26 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 6899999999999999999865
No 459
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.90 E-value=0.00052 Score=46.15 Aligned_cols=22 Identities=23% Similarity=0.539 Sum_probs=19.7
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~ 24 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELAR 24 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999998864
No 460
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.89 E-value=0.00072 Score=46.85 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=21.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
....|+++|..||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999988643
No 461
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.88 E-value=0.00077 Score=49.47 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=20.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHh
Q 030624 19 GERTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~ 41 (174)
....|+|+|++||||||+.+.|.
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La 96 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK 96 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHH
Confidence 35789999999999999999986
No 462
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.87 E-value=0.012 Score=40.54 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHHHHhCC
Q 030624 22 TVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~ 43 (174)
.+++.|++|+|||++++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~ 61 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARD 61 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 4899999999999999998764
No 463
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.85 E-value=0.0007 Score=47.85 Aligned_cols=21 Identities=29% Similarity=0.670 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 030624 22 TVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~ 42 (174)
.|+|+|++||||||+.+.|..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~ 22 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKD 22 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999998864
No 464
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.85 E-value=0.00051 Score=49.47 Aligned_cols=23 Identities=35% Similarity=0.680 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.-+++.|++|+||||+++++.+.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~ 68 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGE 68 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 45899999999999999999864
No 465
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.82 E-value=0.00068 Score=53.79 Aligned_cols=32 Identities=28% Similarity=0.505 Sum_probs=24.5
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.++.+..+.+ ++++|++|+|||+|+++|.+..
T Consensus 57 ~~lg~~ip~G----vLL~GppGtGKTtLaraIa~~~ 88 (499)
T 2dhr_A 57 HEMGARIPKG----VLLVGPPGVGKTHLARAVAGEA 88 (499)
T ss_dssp TTTSCCCCSE----EEEECSSSSSHHHHHHHHHHHT
T ss_pred hhccCCCCce----EEEECCCCCCHHHHHHHHHHHh
Confidence 3444444443 8999999999999999998753
No 466
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=96.80 E-value=0.0005 Score=52.48 Aligned_cols=29 Identities=21% Similarity=0.417 Sum_probs=22.2
Q ss_pred ccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624 10 DWELTSPSNGERTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 10 ~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~ 41 (174)
+..+.+.+ ...+|+|+||+||||++.+|.
T Consensus 18 ~~~i~f~~---gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 18 NSRIKFEK---GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEECCS---EEEEEEECTTSSHHHHHHHHH
T ss_pred ceEEecCC---CeEEEECCCCCCHHHHHHHHH
Confidence 33445444 477999999999999999864
No 467
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=96.80 E-value=0.00078 Score=47.34 Aligned_cols=22 Identities=27% Similarity=0.522 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|++||||||+.+.|..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~ 27 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKK 27 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999854
No 468
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.79 E-value=0.00096 Score=45.12 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..+++.|++|+|||++++.+....
T Consensus 44 ~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CceEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999987653
No 469
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=96.78 E-value=0.0011 Score=46.92 Aligned_cols=24 Identities=17% Similarity=0.540 Sum_probs=20.1
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
.+.|.++|++||||+|....|+..
T Consensus 29 ~kiI~llGpPGsGKgTqa~~L~~~ 52 (217)
T 3umf_A 29 AKVIFVLGGPGSGKGTQCEKLVQK 52 (217)
T ss_dssp CEEEEEECCTTCCHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 367888999999999998887653
No 470
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.76 E-value=0.0064 Score=50.92 Aligned_cols=70 Identities=16% Similarity=0.266 Sum_probs=42.8
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCcccccccCCCCcceeeEEEEEEEeCCcEEEEEeCCCCCCCCCChHHHHHHHHHHHH
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCIG 99 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~iDtpG~~~~~~~~~~~~~~~~~~~~ 99 (174)
.+-|++.||+|+|||+|.+++++... ..++.++.+.+... ......+.++....
T Consensus 238 p~GILL~GPPGTGKT~LAraiA~elg------------------------~~~~~v~~~~l~sk--~~gese~~lr~lF~ 291 (806)
T 3cf2_A 238 PRGILLYGPPGTGKTLIARAVANETG------------------------AFFFLINGPEIMSK--LAGESESNLRKAFE 291 (806)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHTTTT------------------------CEEEEEEHHHHHSS--CTTHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC------------------------CeEEEEEhHHhhcc--cchHHHHHHHHHHH
Confidence 36799999999999999999997531 11223444333221 11223444555555
Q ss_pred hccCCceEEEEEEeCC
Q 030624 100 MAKDGIHAVLVVFSVR 115 (174)
Q Consensus 100 ~~~~~~~~il~v~~~~ 115 (174)
.+.....+|||+.+.+
T Consensus 292 ~A~~~~PsIIfIDEiD 307 (806)
T 3cf2_A 292 EAEKNAPAIIFIDELD 307 (806)
T ss_dssp HHTTSCSEEEEEESGG
T ss_pred HHHHcCCeEEEEehhc
Confidence 5555667788877655
No 471
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=96.75 E-value=0.00093 Score=47.84 Aligned_cols=34 Identities=21% Similarity=0.346 Sum_probs=21.7
Q ss_pred cccccCCCCCCceEEEEEcCCCCCHHHHHHHHhC
Q 030624 9 DDWELTSPSNGERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 9 ~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~ 42 (174)
.+..|..+.++...|++.|++||||||+++.|..
T Consensus 16 ~~~~~~~~~~~~~~i~~eG~~GsGKsT~~~~l~~ 49 (236)
T 3lv8_A 16 ENLYFQSNAMNAKFIVIEGLEGAGKSTAIQVVVE 49 (236)
T ss_dssp ----------CCCEEEEEESTTSCHHHHHHHHHH
T ss_pred cccccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4556666766678999999999999999999764
No 472
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.73 E-value=0.00099 Score=46.68 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
++|+++|++||||+|....|+..
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHH
Confidence 36889999999999999888754
No 473
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.73 E-value=0.0011 Score=47.14 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~ 42 (174)
...|+|+|++||||||+.+.|..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~ 38 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAK 38 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999864
No 474
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=96.71 E-value=0.00054 Score=50.55 Aligned_cols=23 Identities=17% Similarity=0.351 Sum_probs=17.4
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhC
Q 030624 20 ERTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~ 42 (174)
...|+|.|++||||||+.+.|..
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~ 27 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQ 27 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999988765
No 475
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.71 E-value=0.0011 Score=44.41 Aligned_cols=22 Identities=32% Similarity=0.471 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|.+||||||+.+.|..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 6899999999999999999864
No 476
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=96.69 E-value=0.00024 Score=57.70 Aligned_cols=36 Identities=25% Similarity=0.395 Sum_probs=28.0
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHhCCcc
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSILGRRA 45 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~ 45 (174)
.+.+.+....+ ..++++|++|+|||||+++|.+...
T Consensus 50 l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 50 VEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred HhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 33444455555 6899999999999999999998664
No 477
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.69 E-value=0.0014 Score=45.71 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..++|+|++|+|||||...|...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~ 57 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQR 57 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHh
Confidence 67999999999999999998864
No 478
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.68 E-value=0.0011 Score=45.85 Aligned_cols=21 Identities=24% Similarity=0.436 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHHHHhC
Q 030624 22 TVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~ 42 (174)
.|+|.|++||||||+.+.|..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~ 24 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAA 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 799999999999999999865
No 479
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=96.68 E-value=0.002 Score=47.37 Aligned_cols=51 Identities=12% Similarity=0.107 Sum_probs=34.6
Q ss_pred HHHHhccCCceEEEEEEeCCCCCCHHHHHHHHHHHHHHhhhhcCcEEEEEeCcCCCCC
Q 030624 96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELED 153 (174)
Q Consensus 96 ~~~~~~~~~~~~il~v~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~iv~tk~D~~~~ 153 (174)
+.+...+..+|+++.|+|+.++........- +..+ .+|.++|+||+|+...
T Consensus 15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~----~~l~---~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 15 REVTEKLKLIDIVYELVDARIPMSSRNPMIE----DILK---NKPRIMLLNKADKADA 65 (282)
T ss_dssp HHHHHHGGGCSEEEEEEETTSTTTTSCHHHH----HHCS---SSCEEEEEECGGGSCH
T ss_pred HHHHHHHhhCCEEEEEEeCCCCCccCCHHHH----HHHC---CCCEEEEEECcccCCH
Confidence 3444455667999999999866665443322 2222 2689999999999864
No 480
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.68 E-value=0.0002 Score=53.85 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHHHHhCCc
Q 030624 22 TVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 22 ~i~i~G~~g~GKStlin~l~~~~ 44 (174)
.+++.|++|+||||+++.+++..
T Consensus 48 ~~ll~Gp~G~GKTtla~~la~~l 70 (340)
T 1sxj_C 48 HLLFYGPPGTGKTSTIVALAREI 70 (340)
T ss_dssp CEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 38999999999999999998764
No 481
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.68 E-value=0.00079 Score=47.85 Aligned_cols=25 Identities=32% Similarity=0.563 Sum_probs=20.3
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624 15 SPSNGERTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 15 ~~~~~~~~i~i~G~~g~GKStlin~l~ 41 (174)
.+.+ ..++++|++|+|||||...++
T Consensus 20 l~~G--~~~~i~G~~GsGKTtl~~~~~ 44 (247)
T 2dr3_A 20 IPER--NVVLLSGGPGTGKTIFSQQFL 44 (247)
T ss_dssp EETT--CEEEEEECTTSSHHHHHHHHH
T ss_pred CCCC--cEEEEECCCCCCHHHHHHHHH
Confidence 4455 789999999999999976654
No 482
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.67 E-value=0.0013 Score=49.04 Aligned_cols=25 Identities=36% Similarity=0.460 Sum_probs=21.5
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
...++|+||+|||||||...|+...
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 3678999999999999999987643
No 483
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.66 E-value=0.0015 Score=49.24 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..|+|+||+|+|||||...|+...
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998754
No 484
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.65 E-value=0.0012 Score=46.46 Aligned_cols=25 Identities=16% Similarity=0.240 Sum_probs=21.6
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
...+++.|++|+|||++++.+....
T Consensus 52 ~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 52 VQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999987643
No 485
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.65 E-value=0.00071 Score=50.78 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..+++.|++|+||||+++.+.+..
T Consensus 59 ~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 59 PHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 348999999999999999998753
No 486
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.63 E-value=0.0014 Score=48.30 Aligned_cols=22 Identities=23% Similarity=0.534 Sum_probs=20.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhC
Q 030624 21 RTVVLVGRTGNGKSATGNSILG 42 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~ 42 (174)
..|+++|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999875
No 487
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.62 E-value=0.0014 Score=45.34 Aligned_cols=24 Identities=25% Similarity=0.259 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..+++.|++|+|||+|++++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 578999999999999999988644
No 488
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.61 E-value=0.0011 Score=49.00 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..+++.|++|+|||++.+++.+.
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~ 72 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANE 72 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHH
T ss_pred ceEEEECCCCcCHHHHHHHHHHH
Confidence 67999999999999999999864
No 489
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=96.61 E-value=0.00082 Score=51.59 Aligned_cols=31 Identities=23% Similarity=0.255 Sum_probs=25.2
Q ss_pred cCCCCCCceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 13 LTSPSNGERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 13 ~~~~~~~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
+..+.++..+++|+|++|+|||||++.|.+.
T Consensus 167 ~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 167 LASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp HHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred eeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 4445555599999999999999999988764
No 490
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.59 E-value=0.0017 Score=47.84 Aligned_cols=24 Identities=21% Similarity=0.436 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 21 RTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
..+++.|++|+|||++.++|.+..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHHHH
Confidence 579999999999999999988754
No 491
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.58 E-value=0.012 Score=45.05 Aligned_cols=23 Identities=30% Similarity=0.609 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..++|.|++|+|||+++++++..
T Consensus 149 ~~vLL~GppGtGKT~la~aia~~ 171 (389)
T 3vfd_A 149 RGLLLFGPPGNGKTMLAKAVAAE 171 (389)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHh
Confidence 67999999999999999999754
No 492
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=96.55 E-value=0.001 Score=53.14 Aligned_cols=31 Identities=16% Similarity=0.208 Sum_probs=25.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHhCCccc
Q 030624 14 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAF 46 (174)
Q Consensus 14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~ 46 (174)
..+.+ ..++|+|++|+|||||++.+++...+
T Consensus 277 ~i~~G--~i~~i~G~~GsGKSTLl~~l~g~~~~ 307 (525)
T 1tf7_A 277 GFFKD--SIILATGATGTGKTLLVSRFVENACA 307 (525)
T ss_dssp SEESS--CEEEEEECTTSSHHHHHHHHHHHHHT
T ss_pred CCCCC--cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 44555 78999999999999999999986543
No 493
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.53 E-value=0.0013 Score=48.36 Aligned_cols=23 Identities=26% Similarity=0.543 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..+++.|++|+|||++++++.+.
T Consensus 55 ~~vll~Gp~GtGKT~la~~la~~ 77 (297)
T 3b9p_A 55 KGLLLFGPPGNGKTLLARAVATE 77 (297)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHH
T ss_pred CeEEEECcCCCCHHHHHHHHHHH
Confidence 67999999999999999999864
No 494
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.53 E-value=0.0016 Score=49.03 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..|+|+|++|||||||...|...
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~ 30 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKK 30 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCcCcHHHHHHHHHHH
Confidence 57999999999999999988754
No 495
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=96.53 E-value=0.00052 Score=54.69 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=24.7
Q ss_pred ccccccCCCCCCceEEEEEcCCCCCHHHHHHHHh
Q 030624 8 DDDWELTSPSNGERTVVLVGRTGNGKSATGNSIL 41 (174)
Q Consensus 8 ~~~~~~~~~~~~~~~i~i~G~~g~GKStlin~l~ 41 (174)
.++..+.+..+ ..+|+|+||+|||||+.+|.
T Consensus 51 ~~~~~l~f~~g---~n~i~G~NGaGKS~lleAl~ 81 (517)
T 4ad8_A 51 ITQLELELGGG---FCAFTGETGAGKSIIVDALG 81 (517)
T ss_dssp BSCEEEECCCS---EEEEEESHHHHHHHHTHHHH
T ss_pred eeeEEEecCCC---eEEEEcCCCCCHHHHHHHHH
Confidence 34566666665 67899999999999999973
No 496
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=96.52 E-value=0.0013 Score=52.83 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.2
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
...++++||+|+|||||+++|.+..
T Consensus 108 g~~vll~Gp~GtGKTtlar~ia~~l 132 (543)
T 3m6a_A 108 GPILCLAGPPGVGKTSLAKSIAKSL 132 (543)
T ss_dssp SCEEEEESSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 3689999999999999999998754
No 497
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.51 E-value=0.0013 Score=44.37 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.3
Q ss_pred ceEEEEEcCCCCCHHHHHHHHhCCc
Q 030624 20 ERTVVLVGRTGNGKSATGNSILGRR 44 (174)
Q Consensus 20 ~~~i~i~G~~g~GKStlin~l~~~~ 44 (174)
...+++.|++|+|||++++.+....
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999987643
No 498
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.51 E-value=0.0022 Score=47.69 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..++|+||+|||||||...|...
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~ 33 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKI 33 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCccCHHHHHHHHHHh
Confidence 67899999999999999998754
No 499
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.49 E-value=0.0024 Score=49.50 Aligned_cols=25 Identities=36% Similarity=0.324 Sum_probs=21.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHhCC
Q 030624 19 GERTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~ 43 (174)
....|+++|++||||||+.+.|...
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHh
Confidence 4478999999999999999998764
No 500
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.47 E-value=0.002 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHhCC
Q 030624 21 RTVVLVGRTGNGKSATGNSILGR 43 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~ 43 (174)
..|+|+|++||||||+...|...
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~ 28 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADA 28 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999998764
Done!