BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030626
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QDL|B Chain B, The Crystal Structure Of Anthranilate Synthase From
Sulfolobus Solfataricus
Length = 195
Score = 112 bits (279), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/157 (42%), Positives = 90/157 (57%), Gaps = 7/157 (4%)
Query: 11 RKNPRGVLISPGPGAPQ---DSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
R +P ++ISPGPG P+ D G+SL + LG P+ GVC+G Q IG AFG KI R
Sbjct: 43 RIDPDRLIISPGPGTPEKREDIGVSLDVIKYLGKRTPILGVCLGHQAIGYAFGAKI-RRA 101
Query: 68 LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
V HGK S + L G++ F A RYHSLV+++ P ++A ED I
Sbjct: 102 RKVFHGKISNIILVNNSPLSLYYGIAKEFKATRYHSLVVDEVHRPLIVDAISA--EDNEI 159
Query: 128 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164
MA H++Y + GVQFHPES+ T+ G I+ NF+ +
Sbjct: 160 MAIHHEEYP-IYGVQFHPESVGTSLGYKILYNFLNRV 195
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 95.9 bits (237), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 56/151 (37%), Positives = 93/151 (61%), Gaps = 9/151 (5%)
Query: 17 VLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSS 76
+++SPGPG P ++G + + L +P+ G+C+G Q I EA+GG++ ++ ++HGK+S
Sbjct: 52 LMLSPGPGTPSEAGCMPELLQRLRGQLPIIGICLGHQAIVEAYGGQVGQAG-EILHGKAS 110
Query: 77 LVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYK 136
+ +D GE G+ AG++NP RYHSLV + P+D L V A + ++MA R + +
Sbjct: 111 AIAHD--GE-GMFAGMANPLPVARYHSLV--GSNIPAD-LTVNARFGE-MVMAVRDDR-R 162
Query: 137 HLQGVQFHPESIITTEGKTIVRNFIKMIVRK 167
+ G QFHPESI+TT G ++ + + K
Sbjct: 163 RVCGFQFHPESILTTHGARLLEQTLAWALAK 193
>pdb|1I1Q|B Chain B, Structure Of The Cooperative Allosteric Anthranilate
Synthase From Salmonella Typhimurium
Length = 192
Score = 94.7 bits (234), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 94/156 (60%), Gaps = 10/156 (6%)
Query: 12 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM 71
KNP +++SPGPG P ++G + + L +P+ G+C+G Q I EA+GG + ++ ++
Sbjct: 47 KNPV-LMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG-EIL 104
Query: 72 HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAAR 131
HGK++ + +D + + AGL+NP RYHSLV + P+ L + A +G++MA R
Sbjct: 105 HGKATSIEHDGQ---AMFAGLANPLPVARYHSLV--GSNVPA-GLTINAHF-NGMVMAVR 157
Query: 132 HKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 167
H + + G QFHPESI+TT+G ++ + +K
Sbjct: 158 HDADR-VCGFQFHPESILTTQGARLLEQTLAWAQQK 192
>pdb|1WL8|A Chain A, Crystal Structure Of Ph1346 Protein From Pyrococcus
Horikoshii
Length = 189
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 12/153 (7%)
Query: 13 NPRGVLISPGPGAPQDSGISLQTVLELGP--TVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
NP+G++ S GP +++G + + VLE VP+ G+C+G Q I + FGGK+ R
Sbjct: 43 NPKGIIFSGGPSL-ENTG-NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGE--- 97
Query: 71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
+ SLV + E + GL P + S + E + P ++ A +E I A
Sbjct: 98 -KAEYSLVEIEIIDEXEIFKGL--PKRLKVWESHMDEVKELPPK-FKILARSETXPIEAM 153
Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
+H++ + GVQFHPE T +G+ I+RNF K+
Sbjct: 154 KHEELP-IYGVQFHPEVAHTEKGEEILRNFAKL 185
>pdb|2D7J|A Chain A, Crystal Structure Analysis Of Glutamine Amidotransferase
From Pyrococcus Horikoshii Ot3
Length = 209
Score = 61.2 bits (147), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 82/153 (53%), Gaps = 12/153 (7%)
Query: 13 NPRGVLISPGPGAPQDSGISLQTVLELGP--TVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
NP+G++ S GP +++G + + VLE VP+ G+C+G Q I + FGGK+ R
Sbjct: 63 NPKGIIFSGGPSL-ENTG-NCEKVLEHYDEFNVPILGICLGHQLIAKFFGGKVGRGE--- 117
Query: 71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAA 130
+ SLV + ED + GL P + S + E + P ++ A +E I A
Sbjct: 118 -KAEYSLVEIEIIDEDEIFKGL--PKRLKVWESHMDEVKELPPK-FKILARSETCPIEAM 173
Query: 131 RHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
+H++ + GVQFHPE T +G+ I+RNF K+
Sbjct: 174 KHEELP-IYGVQFHPEVAHTEKGEEILRNFAKL 205
>pdb|1GPM|A Chain A, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|B Chain B, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|C Chain C, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
pdb|1GPM|D Chain D, Escherichia Coli Gmp Synthetase Complexed With Amp And
Pyrophosphate
Length = 525
Score = 56.6 bits (135), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 50/167 (29%), Positives = 80/167 (47%), Gaps = 20/167 (11%)
Query: 13 NPRGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
NP G+++S GP + ++S + Q V E G VP+FGVC G+Q + GG + S
Sbjct: 50 NPSGIILSGGPESTTEENSPRAPQYVFEAG--VPVFGVCYGMQTMAMQLGGHVEASN--- 104
Query: 71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVI------EKESFPSDALEVTAWTED 124
+ + + L+ G+ + TA L + + + PSD + V + TE
Sbjct: 105 -EREFGYAQVEVVNDSALVRGIEDALTADGKPLLDVWMSHGDKVTAIPSDFITVAS-TES 162
Query: 125 G--LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKEA 169
IMA K++ GVQFHPE T +G ++ F++ I + EA
Sbjct: 163 CPFAIMANEEKRF---YGVQFHPEVTHTRQGMRMLERFVRDICQCEA 206
>pdb|2YWB|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
pdb|2YWB|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus
Length = 503
Score = 51.2 bits (121), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 68/158 (43%), Gaps = 9/158 (5%)
Query: 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 65
L + P+ +++S GP + D +PL G+C G+Q + + GG++ R
Sbjct: 35 LEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGMQLLAQELGGRVER 94
Query: 66 SPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG 125
+ +GK+ L + E L GL H + + P V A TE+
Sbjct: 95 AGRA-EYGKALLTRH----EGPLFRGLEGEVQVWMSHQDAV---TAPPPGWRVVAETEEN 146
Query: 126 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
+ AA GVQFHPE T +G I+ NF+++
Sbjct: 147 PV-AAIASPDGRAYGVQFHPEVAHTPKGMQILENFLEL 183
>pdb|2VPI|A Chain A, Human Gmp Synthetase - Glutaminase Domain
pdb|2VPI|B Chain B, Human Gmp Synthetase - Glutaminase Domain
Length = 218
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 15 RGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
R ++IS GP + +D+ + +G P+ G+C G+Q + + FGG + + +
Sbjct: 69 RAIIISGGPNSVYAEDAPWFDPAIFTIGK--PVLGICYGMQMMNKVFGGTVHKKSVR--- 123
Query: 73 GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132
+ + L GL H ++K +D +V A + G I+A
Sbjct: 124 -EDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARS--GNIVAGIA 177
Query: 133 KKYKHLQGVQFHPESIITTEGKTIVRNFI 161
+ K L G QFHPE +T GK I++NF+
Sbjct: 178 NESKKLYGAQFHPEVGLTENGKVILKNFL 206
>pdb|2VXO|A Chain A, Human Gmp Synthetase In Complex With Xmp
pdb|2VXO|B Chain B, Human Gmp Synthetase In Complex With Xmp
Length = 697
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 15 RGVLISPGPGA--PQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMH 72
R ++IS GP + +D+ + +G P+ G+C G+Q + + FGG + + +
Sbjct: 74 RAIIISGGPNSVYAEDAPWFDPAIFTIGK--PVLGICYGMQMMNKVFGGTVHKKSVR--- 128
Query: 73 GKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132
+ + L GL H ++K +D +V A + G I+A
Sbjct: 129 -EDGVFNISVDNTCSLFRGLQKEEVVLLTHGDSVDK---VADGFKVVARS--GNIVAGIA 182
Query: 133 KKYKHLQGVQFHPESIITTEGKTIVRNFI 161
+ K L G QFHPE +T GK I++NF+
Sbjct: 183 NESKKLYGAQFHPEVGLTENGKVILKNFL 211
>pdb|1M6V|B Chain B, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|D Chain D, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|F Chain F, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
pdb|1M6V|H Chain H, Crystal Structure Of The G359f (Small Subunit) Point
Mutant Of Carbamoyl Phosphate Synthetase
Length = 382
Score = 50.4 bits (119), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 17/158 (10%)
Query: 11 RKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
+ NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A G K V+
Sbjct: 230 KMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALASGAKTVKMK 287
Query: 68 LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
G HG + V EK + A + H +++ + P++ L VT +
Sbjct: 288 FG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVTHKSLFDGT 336
Query: 128 MAARHKKYKHLQGVQFHPE-SIITTEGKTIVRNFIKMI 164
+ H+ K Q HPE S + + +FI++I
Sbjct: 337 LQGIHRTDKPAFSFQGHPEASPFPHDAAPLFDHFIELI 374
>pdb|2YWC|A Chain A, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|B Chain B, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|C Chain C, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
pdb|2YWC|D Chain D, Crystal Structure Of Gmp Synthetase From Thermus
Thermophilus In Complex With Xmp
Length = 503
Score = 50.4 bits (119), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 67/158 (42%), Gaps = 9/158 (5%)
Query: 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVR 65
L + P+ +++S GP + D +PL G+C G Q + + GG++ R
Sbjct: 35 LEEVLKHRPQALILSGGPRSVFDPDAPRPDPRLFSSGLPLLGICYGXQLLAQELGGRVER 94
Query: 66 SPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG 125
+ +GK+ L + E L GL H + + P V A TE+
Sbjct: 95 AGRA-EYGKALLTRH----EGPLFRGLEGEVQVWXSHQDAV---TAPPPGWRVVAETEEN 146
Query: 126 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
+ A + GVQFHPE T +G I+ NF+++
Sbjct: 147 PVAAIASPDGRAY-GVQFHPEVAHTPKGXQILENFLEL 183
>pdb|1T36|B Chain B, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|D Chain D, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|F Chain F, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
pdb|1T36|H Chain H, Crystal Structure Of E. Coli Carbamoyl Phosphate
Synthetase Small Subunit Mutant C248d Complexed With
Uridine 5'-Monophosphate
Length = 382
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 11 RKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
+ NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A G K V+
Sbjct: 230 KMNPDGIFLSNGPGDPAPDDYAITAIQKFLET--DIPVFGICLGHQLLALASGAKTVKMK 287
Query: 68 LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
G HG + V EK + A + H +++ + P++ L VT +
Sbjct: 288 FG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVTHKSLFDGT 336
Query: 128 MAARHKKYKHLQGVQFHPES 147
+ H+ K Q HPE+
Sbjct: 337 LQGIHRTDKPAFSFQGHPEA 356
>pdb|1JDB|C Chain C, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|F Chain F, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|I Chain I, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1JDB|L Chain L, Carbamoyl Phosphate Synthetase From Escherichia Coli
pdb|1BXR|B Chain B, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|D Chain D, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|F Chain F, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1BXR|H Chain H, Structure Of Carbamoyl Phosphate Synthetase Complexed With
The Atp Analog Amppnp
pdb|1CE8|B Chain B, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|D Chain D, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|F Chain F, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
pdb|1CE8|H Chain H, Carbamoyl Phosphate Synthetase From Escherichis Coli With
Complexed With The Allosteric Ligand Imp
Length = 382
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 16/140 (11%)
Query: 11 RKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
+ NP G+ +S GPG AP D I+ +Q LE +P+FG+C+G Q + A G K V+
Sbjct: 230 KMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGICLGHQLLALASGAKTVKMK 287
Query: 68 LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
G HG + V EK + A + H +++ + P++ L VT +
Sbjct: 288 FG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVTHKSLFDGT 336
Query: 128 MAARHKKYKHLQGVQFHPES 147
+ H+ K Q HPE+
Sbjct: 337 LQGIHRTDKPAFSFQGHPEA 356
>pdb|1C30|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C30|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase: Small
Subunit Mutation C269s
pdb|1C3O|B Chain B, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|D Chain D, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|F Chain F, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
pdb|1C3O|H Chain H, Crystal Structure Of The Carbamoyl Phosphate Synthetase:
Small Subunit Mutant C269s With Bound Glutamine
Length = 382
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 11 RKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
+ NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A G K V+
Sbjct: 230 KMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGISLGHQLLALASGAKTVKMK 287
Query: 68 LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
G HG + V EK + A + H +++ + P++ L VT +
Sbjct: 288 FG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVTHKSLFDGT 336
Query: 128 MAARHKKYKHLQGVQFHPES 147
+ H+ K Q HPE+
Sbjct: 337 LQGIHRTDKPAFSFQGHPEA 356
>pdb|1CS0|B Chain B, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|D Chain D, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|F Chain F, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1CS0|H Chain H, Crystal Structure Of Carbamoyl Phosphate Synthetase
Complexed At Cys269 In The Small Subunit With The
Tetrahedral Mimic L-glutamate Gamma-semialdehyde
pdb|1KEE|B Chain B, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|D Chain D, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|F Chain F, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
pdb|1KEE|H Chain H, Inactivation Of The Amidotransferase Activity Of Carbamoyl
Phosphate Synthetase By The Antibiotic Acivicin
Length = 382
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 11 RKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
+ NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A G K V+
Sbjct: 230 KMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALASGAKTVKMK 287
Query: 68 LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
G HG + V EK + A + H +++ + P++ L VT +
Sbjct: 288 FG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVTHKSLFDGT 336
Query: 128 MAARHKKYKHLQGVQFHPES 147
+ H+ K Q HPE+
Sbjct: 337 LQGIHRTDKPAFSFQGHPEA 356
>pdb|1A9X|B Chain B, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|D Chain D, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|F Chain F, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
pdb|1A9X|H Chain H, Carbamoyl Phosphate Synthetase: Caught In The Act Of
Glutamine Hydrolysis
Length = 379
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 16/140 (11%)
Query: 11 RKNPRGVLISPGPG--APQDSGIS-LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSP 67
+ NP G+ +S GPG AP D I+ +Q LE +P+FG+ +G Q + A G K V+
Sbjct: 229 KMNPDGIFLSNGPGDPAPCDYAITAIQKFLET--DIPVFGIXLGHQLLALASGAKTVKMK 286
Query: 68 LGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
G HG + V EK + A + H +++ + P++ L VT +
Sbjct: 287 FG-HHGGNHPVKDVEKNVVMITA---------QNHGFAVDEATLPAN-LRVTHKSLFDGT 335
Query: 128 MAARHKKYKHLQGVQFHPES 147
+ H+ K Q +PE+
Sbjct: 336 LQGIHRTDKPAFSFQGNPEA 355
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 41.6 bits (96), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 53/131 (40%), Gaps = 8/131 (6%)
Query: 44 PLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHS 103
P+ G+C+G Q I FG +V++ V + E + GL + T H+
Sbjct: 87 PILGICVGAQFIALHFGASVVKAKHPEFGKTKVSVXHSEN----IFGGLPSEITVWENHN 142
Query: 104 LVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
E + P D + A + + HK + + QFHPE T G+ I RNFI +
Sbjct: 143 --DEIINLPDD-FTLAASSATCQVQGFYHKT-RPIYATQFHPEVEHTQYGRDIFRNFIGI 198
Query: 164 IVRKEAADSQN 174
+N
Sbjct: 199 CASYREIQKEN 209
>pdb|3TQI|A Chain A, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|B Chain B, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|C Chain C, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
pdb|3TQI|D Chain D, Structure Of The Gmp Synthase (Guaa) From Coxiella
Burnetii
Length = 527
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 67/159 (42%), Gaps = 10/159 (6%)
Query: 13 NPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV 70
NP G+++S GP S + + E+G P+ G+C G+Q + GGK+ R+
Sbjct: 53 NPHGIILSGGPETVTLSHTLRAPAFIFEIG--CPVLGICYGMQTMAYQLGGKVNRTAKAE 110
Query: 71 MHGKSSLVYYDEKGEDGLLAGLS---NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLI 127
V DG+ +S P I E P E TA T++ +
Sbjct: 111 FGHAQLRVLNPAFLFDGIEDQVSPQGEPLLDVWMSHGDIVSELPP--GFEATACTDNSPL 168
Query: 128 MAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVR 166
A K + G+QFHPE T +G I+ +F+ I +
Sbjct: 169 AAMADFKRRFF-GLQFHPEVTHTPQGHRILAHFVIHICQ 206
>pdb|3UOW|A Chain A, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
pdb|3UOW|B Chain B, Crystal Structure Of Pf10_0123, A Gmp Synthetase From
Plasmodium Falciparum
Length = 556
Score = 41.6 bits (96), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 42/189 (22%)
Query: 13 NPRGVLISPGP------GAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 66
N +GV++S GP G+P + LE +P+FG+C G+Q I G++ +S
Sbjct: 50 NIKGVILSGGPYSVTEAGSPHLKKEVFEYFLE--KKIPIFGICYGMQEIAVQMNGEVKKS 107
Query: 67 P--------LGVMHGK--SSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDAL 116
+ ++ +++ Y G+ L + + + E+ SD
Sbjct: 108 KTSEYGCTDVNILRNDNINNITYCRNFGDSSSAMDLYSNYKLMNETCCLF--ENIKSDI- 164
Query: 117 EVTAW-------------------TEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 157
T W +E+ LI + +K+Y ++ GVQ+HPE + +G+ +
Sbjct: 165 -TTVWMNHNDEVTKIPENFYLVSSSENCLICSIYNKEY-NIYGVQYHPEVYESLDGELMF 222
Query: 158 RNFIKMIVR 166
NF I +
Sbjct: 223 YNFAYNICK 231
>pdb|3R74|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
pdb|3R74|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
Length = 645
Score = 38.1 bits (87), Expect = 0.002, Method: Composition-based stats.
Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 26/163 (15%)
Query: 17 VLISPGPGAPQDSGIS--------LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPL 68
V++ PGPG P D+G L+ +++ G P VC+ Q + G +VR +
Sbjct: 490 VVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGK--PFMAVCLSHQILNAILGIPLVRREV 547
Query: 69 GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED---G 125
+ + + ++ G N + A ++ D + A + D G
Sbjct: 548 PNQGIQVEIDLFGQRER----VGFYNTYVAQTV------RDEMDVDGVGTVAISRDPRTG 597
Query: 126 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKE 168
+ A R + +Q FH ES++T +G I+ I +R+E
Sbjct: 598 EVHALRGPTFSSMQ---FHAESVLTVDGPRILGEAITHAIRRE 637
>pdb|3R75|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R75|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate, Glutamine And
Contaminating Zn2+
pdb|3R76|A Chain A, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
pdb|3R76|B Chain B, Crystal Structure Of 2-Amino-2-Desoxyisochorismate
Synthase (Adic) Synthase Phze From Burkholderia Lata 383
In Complex With Benzoate, Pyruvate And Glutamine
Length = 645
Score = 33.9 bits (76), Expect = 0.046, Method: Composition-based stats.
Identities = 36/163 (22%), Positives = 66/163 (40%), Gaps = 26/163 (15%)
Query: 17 VLISPGPGAPQDSGIS--------LQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPL 68
V++ PGPG P D+G L+ +++ G P V + Q + G +VR +
Sbjct: 490 VVMGPGPGDPSDAGDPRIARLYAWLRHLIDEGK--PFMAVXLSHQILNAILGIPLVRREV 547
Query: 69 GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED---G 125
+ + + ++ G N + A ++ D + A + D G
Sbjct: 548 PNQGIQVEIDLFGQRER----VGFYNTYVAQTV------RDEMDVDGVGTVAISRDPRTG 597
Query: 126 LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRKE 168
+ A R + +Q FH ES++T +G I+ I +R+E
Sbjct: 598 EVHALRGPTFSSMQ---FHAESVLTVDGPRILGEAITHAIRRE 637
>pdb|3L7N|A Chain A, Crystal Structure Of Smu.1228c
Length = 236
Score = 31.6 bits (70), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 45 LFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE-DGLLAGLSNPFTAGRYH 102
+ GVC+G Q +G A+G + SP + + L+ E G+ D L+ S+ G +H
Sbjct: 87 IVGVCLGAQLMGVAYGADYLHSPKKEI--GNYLISLTEAGKMDSYLSDFSDDLLVGHWH 143
>pdb|2NV0|A Chain A, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
pdb|2NV0|B Chain B, Structure Of The Glutaminase Subunit Pdx2 (Yaae) Of Plp
Synthase From Bacillus Subtilis
Length = 196
Score = 31.6 bits (70), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 54/127 (42%), Gaps = 19/127 (14%)
Query: 44 PLFGVCMGLQCIGEAFGGKIVRSP----LGVMHGKSSL-VYYDEKGEDGLLAGLSNPFTA 98
P+FG C GL + + G +P L V+ ++S D D + GL PFT
Sbjct: 74 PMFGTCAGLIILAKEIAGS--DNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTG 131
Query: 99 GRYHSLVIEKESFPSDALEVTAWTE-DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 157
+ I V +E +G I+AA+ ++ G FHPE TE +
Sbjct: 132 -----VFIRAPHILEAGENVEVLSEHNGRIVAAKQGQFL---GCSFHPE---LTEDHRVT 180
Query: 158 RNFIKMI 164
+ F++M+
Sbjct: 181 QLFVEMV 187
>pdb|2NV2|B Chain B, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|D Chain D, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|F Chain F, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|H Chain H, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|J Chain J, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|L Chain L, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|N Chain N, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|P Chain P, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|R Chain R, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|T Chain T, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|V Chain V, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
pdb|2NV2|X Chain X, Structure Of The Plp Synthase Complex Pdx12 (YAADE) FROM
BACILLUS Subtilis
Length = 204
Score = 28.9 bits (63), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 54/127 (42%), Gaps = 19/127 (14%)
Query: 44 PLFGVCMGLQCIGEAFGGKIVRSP----LGVMHGKSSL-VYYDEKGEDGLLAGLSNPFTA 98
P+FG C GL + + G +P L V+ ++S D D + GL PFT
Sbjct: 74 PMFGTCAGLIILAKEIAGS--DNPHLGLLNVVVERNSFGRQVDSFEADLTIKGLDEPFTG 131
Query: 99 GRYHSLVIEKESFPSDALEVTAWTE-DGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 157
+ I V +E +G I+AA+ ++ G F+PE TE +
Sbjct: 132 -----VFIRAPHILEAGENVEVLSEHNGRIVAAKQGQFL---GCSFNPE---LTEDHRVT 180
Query: 158 RNFIKMI 164
+ F++M+
Sbjct: 181 QLFVEMV 187
>pdb|3M3P|A Chain A, Crystal Structure Of Glutamine Amido Transferase From
Methylobacillus Flagellatus
Length = 250
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 12 KNPRGVLISPGPGAPQDSGISLQTVLEL-----GPTVPLFGVCMGLQCIGEAFGGKIVRS 66
++ G+ GP + D T+L L VP+ G C+G Q + +A GG++ S
Sbjct: 47 RDCSGLAXXGGPXSANDDLPWXPTLLALIRDAVAQRVPVIGHCLGGQLLAKAXGGEVTDS 106
Query: 67 P 67
P
Sbjct: 107 P 107
>pdb|1LEH|A Chain A, Leucine Dehydrogenase From Bacillus Sphaericus
pdb|1LEH|B Chain B, Leucine Dehydrogenase From Bacillus Sphaericus
Length = 364
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 105 VIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEG 153
V+ + P +V A + D + RH KY H G+ + P+ +I G
Sbjct: 242 VLNDFTIPQLKAKVIAGSADNQLKDPRHGKYLHELGIVYAPDYVINAGG 290
>pdb|4GUD|A Chain A, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
pdb|4GUD|B Chain B, Crystal Structure Of Amidotransferase Hish From Vibrio
Cholerae
Length = 211
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 76/165 (46%), Gaps = 24/165 (14%)
Query: 18 LISPGPGAPQDSGISL--QTVLELGPTV--PLFGVCMGLQCIG---EAFGGKI--VRSPL 68
L PG G ++ +L + ++EL V PL G+C+G Q +G E G K + L
Sbjct: 44 LFLPGVGTASEAXKNLTERDLIELVKRVEKPLLGICLGXQLLGKLSEEKGQKADEIVQCL 103
Query: 69 GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV--IEKESF----PSDALEVTAWT 122
G++ G+ L+ + G+ L N H L IE +++ S A V +T
Sbjct: 104 GLVDGEVRLL---QTGDLPLPHXGWNTVQVKEGHPLFNGIEPDAYFYFVHSFAXPVGDYT 160
Query: 123 ----EDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163
E G +A + + GVQFHPE + G +++NF+++
Sbjct: 161 IAQCEYGQPFSAAIQAGNYY-GVQFHPER-SSKAGARLIQNFLEL 203
>pdb|1OZG|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZG|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactor And
With An Unusual Intermediate
pdb|1OZH|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|C Chain C, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZH|D Chain D, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-Bound Cofactor And
With An Unusual Intermediate.
pdb|1OZF|A Chain A, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
pdb|1OZF|B Chain B, The Crystal Structure Of Klebsiella Pneumoniae
Acetolactate Synthase With Enzyme-bound Cofactors
Length = 566
Score = 27.3 bits (59), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Query: 121 WTEDGLIMAA--RHKKYKHLQGVQFHP 145
W ++G M A KKY+ L GV+F P
Sbjct: 472 WVDNGYNMVAIQEEKKYQRLSGVEFGP 498
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.137 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,504,333
Number of Sequences: 62578
Number of extensions: 234462
Number of successful extensions: 445
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 393
Number of HSP's gapped (non-prelim): 33
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)