Query 030626
Match_columns 174
No_of_seqs 179 out of 1068
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 16:35:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02335 anthranilate synthase 100.0 5.1E-40 1.1E-44 247.2 17.7 165 6-170 55-219 (222)
2 COG0512 PabA Anthranilate/para 100.0 6.5E-39 1.4E-43 230.5 15.2 150 8-163 40-190 (191)
3 PRK08007 para-aminobenzoate sy 100.0 2.4E-38 5.2E-43 232.8 17.0 151 6-162 36-186 (187)
4 PRK07649 para-aminobenzoate/an 100.0 7.6E-38 1.6E-42 231.3 17.2 155 6-166 36-190 (195)
5 TIGR00566 trpG_papA glutamine 100.0 6E-37 1.3E-41 225.6 16.9 151 6-162 36-187 (188)
6 PRK05670 anthranilate synthase 100.0 8.7E-37 1.9E-41 225.1 16.8 152 7-164 37-188 (189)
7 CHL00101 trpG anthranilate syn 100.0 1.1E-36 2.4E-41 224.6 16.0 152 7-163 37-188 (190)
8 PRK06774 para-aminobenzoate sy 100.0 1.7E-36 3.6E-41 223.9 16.4 151 6-162 36-190 (191)
9 PRK06895 putative anthranilate 100.0 1.2E-35 2.6E-40 219.1 15.9 145 13-162 43-187 (190)
10 PRK05637 anthranilate synthase 100.0 2.6E-35 5.7E-40 219.4 16.0 154 6-165 37-206 (208)
11 PRK08857 para-aminobenzoate sy 100.0 4.4E-35 9.5E-40 216.6 16.4 151 7-163 37-192 (193)
12 cd01743 GATase1_Anthranilate_S 100.0 1.2E-34 2.7E-39 212.8 15.9 142 12-161 41-184 (184)
13 TIGR00888 guaA_Nterm GMP synth 100.0 1.5E-34 3.3E-39 213.0 15.8 151 6-165 34-185 (188)
14 PRK07765 para-aminobenzoate sy 100.0 1.5E-34 3.2E-39 216.6 15.1 147 13-165 46-193 (214)
15 KOG0026 Anthranilate synthase, 100.0 3.3E-34 7.1E-39 199.9 12.2 164 4-167 54-217 (223)
16 PRK00758 GMP synthase subunit 100.0 2E-33 4.3E-38 206.4 15.0 148 6-165 35-182 (184)
17 cd01742 GATase1_GMP_Synthase T 100.0 3E-33 6.5E-38 204.9 14.1 140 12-161 40-181 (181)
18 COG0518 GuaA GMP synthase - Gl 100.0 9.8E-34 2.1E-38 208.8 11.3 149 7-164 39-193 (198)
19 PLN02347 GMP synthetase 100.0 8.9E-33 1.9E-37 229.7 15.9 155 6-168 46-206 (536)
20 PF00117 GATase: Glutamine ami 100.0 1.6E-33 3.5E-38 208.0 9.9 150 11-163 40-191 (192)
21 PRK09522 bifunctional glutamin 100.0 8.8E-33 1.9E-37 229.9 15.4 152 6-166 41-192 (531)
22 PRK14607 bifunctional glutamin 100.0 2.2E-32 4.8E-37 228.6 17.0 154 6-165 37-190 (534)
23 PRK11366 puuD gamma-glutamyl-g 100.0 8.4E-32 1.8E-36 206.4 16.0 151 13-169 61-249 (254)
24 PRK00074 guaA GMP synthase; Re 100.0 4.7E-32 1E-36 225.4 14.6 151 6-166 39-191 (511)
25 TIGR01368 CPSaseIIsmall carbam 100.0 1.5E-31 3.3E-36 212.6 15.6 149 6-165 207-357 (358)
26 PRK09065 glutamine amidotransf 100.0 1.6E-31 3.5E-36 203.1 14.6 140 13-162 54-198 (237)
27 COG0505 CarA Carbamoylphosphat 100.0 1.7E-31 3.7E-36 207.1 14.1 151 6-168 213-366 (368)
28 PRK12838 carbamoyl phosphate s 100.0 3.8E-31 8.2E-36 210.0 15.8 150 6-166 201-352 (354)
29 cd01744 GATase1_CPSase Small c 100.0 1E-30 2.3E-35 191.0 15.0 143 7-161 33-178 (178)
30 TIGR01815 TrpE-clade3 anthrani 100.0 9.9E-31 2.1E-35 223.3 16.5 150 11-166 557-710 (717)
31 PRK12564 carbamoyl phosphate s 100.0 1E-30 2.3E-35 208.1 15.4 146 6-163 211-359 (360)
32 PRK13566 anthranilate synthase 100.0 1.3E-30 2.8E-35 222.9 15.9 151 9-165 565-719 (720)
33 PRK07567 glutamine amidotransf 100.0 3.2E-30 6.9E-35 196.4 15.3 131 12-148 50-193 (242)
34 PRK05665 amidotransferase; Pro 100.0 3.2E-30 6.9E-35 195.9 14.8 128 13-148 57-189 (240)
35 COG2071 Predicted glutamine am 100.0 3.5E-30 7.5E-35 190.9 13.7 149 13-167 60-241 (243)
36 CHL00197 carA carbamoyl-phosph 100.0 6.3E-30 1.4E-34 204.4 15.8 150 6-169 226-379 (382)
37 PLN02889 oxo-acid-lyase/anthra 100.0 1.4E-29 3E-34 219.0 16.1 149 12-167 130-338 (918)
38 PLN02771 carbamoyl-phosphate s 100.0 2.6E-29 5.6E-34 201.5 13.8 135 6-152 274-409 (415)
39 cd01741 GATase1_1 Subgroup of 100.0 2E-29 4.4E-34 185.7 12.1 138 12-161 45-188 (188)
40 PRK08250 glutamine amidotransf 100.0 6.3E-29 1.4E-33 188.6 14.4 138 13-162 45-192 (235)
41 PRK06490 glutamine amidotransf 100.0 1.6E-28 3.4E-33 186.7 15.1 136 13-163 52-192 (239)
42 PRK07053 glutamine amidotransf 100.0 3E-28 6.5E-33 184.6 15.2 138 12-162 46-190 (234)
43 PRK06186 hypothetical protein; 100.0 3.3E-28 7.1E-33 181.8 11.5 154 13-166 53-228 (229)
44 cd01745 GATase1_2 Subgroup of 100.0 4.6E-28 1E-32 178.5 11.4 118 12-161 52-189 (189)
45 TIGR01823 PabB-fungal aminodeo 100.0 3.8E-27 8.3E-32 202.7 16.1 149 12-168 52-208 (742)
46 COG0118 HisH Glutamine amidotr 99.9 3.3E-27 7.3E-32 170.9 11.9 142 13-164 39-203 (204)
47 cd01746 GATase1_CTP_Synthase T 99.9 2.6E-27 5.7E-32 179.3 10.9 148 13-161 55-235 (235)
48 PRK13525 glutamine amidotransf 99.9 1.3E-26 2.7E-31 170.8 12.5 135 13-165 38-188 (189)
49 PRK13146 hisH imidazole glycer 99.9 1.1E-26 2.3E-31 173.7 11.4 142 13-163 41-207 (209)
50 PF07722 Peptidase_C26: Peptid 99.9 1E-26 2.2E-31 174.6 11.1 136 4-146 50-217 (217)
51 KOG1622 GMP synthase [Nucleoti 99.9 3E-27 6.4E-32 187.2 8.2 148 7-164 53-204 (552)
52 PRK13170 hisH imidazole glycer 99.9 3.4E-26 7.4E-31 169.4 13.4 137 13-162 38-195 (196)
53 PRK14004 hisH imidazole glycer 99.9 3.7E-26 8.1E-31 170.4 12.6 143 13-163 37-209 (210)
54 PRK13527 glutamine amidotransf 99.9 3.5E-26 7.6E-31 169.9 11.8 143 13-165 43-198 (200)
55 cd01748 GATase1_IGP_Synthase T 99.9 2.2E-26 4.8E-31 170.8 10.5 138 13-161 36-198 (198)
56 CHL00188 hisH imidazole glycer 99.9 4.2E-26 9.1E-31 170.2 11.6 141 13-163 39-209 (210)
57 PRK13141 hisH imidazole glycer 99.9 4E-26 8.7E-31 170.3 10.8 143 13-165 37-203 (205)
58 PRK05380 pyrG CTP synthetase; 99.9 1.6E-25 3.4E-30 183.9 14.2 156 13-169 343-531 (533)
59 PRK13152 hisH imidazole glycer 99.9 1.6E-25 3.4E-30 166.6 13.0 143 6-162 32-200 (201)
60 TIGR00337 PyrG CTP synthase. C 99.9 1.4E-25 3E-30 184.2 13.2 150 13-163 343-525 (525)
61 PRK13181 hisH imidazole glycer 99.9 1.2E-25 2.6E-30 167.0 10.6 140 13-162 37-198 (199)
62 cd01747 GATase1_Glutamyl_Hydro 99.9 7.3E-25 1.6E-29 169.5 15.3 138 13-151 54-218 (273)
63 PLN02327 CTP synthase 99.9 4.5E-25 9.8E-30 181.6 13.3 159 12-170 361-552 (557)
64 KOG3179 Predicted glutamine sy 99.9 2.4E-25 5.1E-30 160.2 9.4 132 12-148 58-195 (245)
65 PRK13143 hisH imidazole glycer 99.9 7.6E-25 1.6E-29 162.8 11.8 142 13-165 38-199 (200)
66 TIGR01855 IMP_synth_hisH imida 99.9 9.1E-25 2E-29 161.9 11.7 138 13-162 36-195 (196)
67 COG0504 PyrG CTP synthase (UTP 99.9 9.9E-25 2.1E-29 175.2 10.7 156 14-169 344-531 (533)
68 cd01749 GATase1_PB Glutamine A 99.9 3.5E-23 7.7E-28 151.8 8.7 131 13-161 35-183 (183)
69 PRK05368 homoserine O-succinyl 99.9 3.6E-22 7.7E-27 155.3 14.0 153 6-165 92-252 (302)
70 TIGR03800 PLP_synth_Pdx2 pyrid 99.9 1.8E-22 4E-27 147.9 10.8 132 13-162 36-184 (184)
71 PRK13142 hisH imidazole glycer 99.9 8.9E-22 1.9E-26 144.3 10.9 137 6-163 32-187 (192)
72 PLN02617 imidazole glycerol ph 99.9 1.6E-21 3.5E-26 162.4 13.6 146 13-168 44-214 (538)
73 KOG1224 Para-aminobenzoate (PA 99.9 1.2E-21 2.6E-26 158.3 11.0 149 13-165 64-218 (767)
74 TIGR01737 FGAM_synth_I phospho 99.9 2.7E-21 5.9E-26 146.2 10.1 148 13-163 40-226 (227)
75 KOG2387 CTP synthase (UTP-ammo 99.8 5.4E-21 1.2E-25 151.7 9.0 168 2-169 351-552 (585)
76 KOG0370 Multifunctional pyrimi 99.8 1.6E-20 3.4E-25 159.8 11.4 150 8-169 205-357 (1435)
77 PRK03619 phosphoribosylformylg 99.8 1.6E-19 3.6E-24 135.8 11.4 148 13-162 41-218 (219)
78 PLN02832 glutamine amidotransf 99.8 4.6E-18 9.9E-23 129.0 10.5 53 5-59 32-89 (248)
79 PRK13526 glutamine amidotransf 99.7 2.5E-16 5.3E-21 113.9 10.8 137 4-162 32-178 (179)
80 COG0047 PurL Phosphoribosylfor 99.7 4.7E-16 1E-20 114.7 10.3 150 13-164 43-230 (231)
81 PRK01175 phosphoribosylformylg 99.6 1.8E-15 3.9E-20 116.3 11.4 151 13-165 48-258 (261)
82 cd01740 GATase1_FGAR_AT Type 1 99.6 3.1E-15 6.7E-20 114.0 10.5 145 13-160 43-237 (238)
83 KOG1559 Gamma-glutamyl hydrola 99.6 6.5E-16 1.4E-20 114.7 5.8 134 13-150 111-273 (340)
84 PF01174 SNO: SNO glutamine am 99.5 5.3E-15 1.2E-19 106.7 4.1 147 2-165 24-187 (188)
85 COG0311 PDX2 Predicted glutami 99.5 1.4E-13 3.1E-18 98.5 11.0 145 2-166 29-192 (194)
86 KOG0623 Glutamine amidotransfe 99.5 2.3E-14 5.1E-19 111.3 7.3 149 4-163 32-207 (541)
87 PF13507 GATase_5: CobB/CobQ-l 99.4 2E-12 4.4E-17 99.2 9.3 151 12-164 45-259 (259)
88 cd03131 GATase1_HTS Type 1 glu 99.3 3E-12 6.5E-17 92.7 5.7 111 6-120 55-174 (175)
89 PF04204 HTS: Homoserine O-suc 99.3 1.4E-11 3.1E-16 95.5 7.8 154 5-166 90-252 (298)
90 TIGR01857 FGAM-synthase phosph 99.2 1.4E-10 3.1E-15 104.4 12.2 149 13-163 1031-1238(1239)
91 TIGR01001 metA homoserine O-su 99.2 4.2E-10 9.1E-15 86.8 11.0 152 5-165 91-251 (300)
92 TIGR01735 FGAM_synt phosphorib 99.0 2.3E-09 5E-14 97.8 10.9 149 13-163 1100-1309(1310)
93 PLN03206 phosphoribosylformylg 99.0 4.1E-09 8.9E-14 95.8 11.7 150 13-164 1082-1306(1307)
94 PRK05297 phosphoribosylformylg 98.9 1E-08 2.2E-13 93.8 12.2 150 13-164 1080-1289(1290)
95 KOG3210 Imidazoleglycerol-phos 98.9 5.6E-09 1.2E-13 73.9 8.1 58 1-60 46-109 (226)
96 PRK06278 cobyrinic acid a,c-di 98.7 1.1E-07 2.3E-12 79.1 9.0 50 6-59 31-82 (476)
97 TIGR01739 tegu_FGAM_synt herpe 98.5 8.2E-07 1.8E-11 81.1 10.0 134 13-148 973-1168(1202)
98 PHA03366 FGAM-synthase; Provis 98.5 1.1E-06 2.4E-11 80.7 10.4 153 13-166 1072-1301(1304)
99 COG1897 MetA Homoserine trans- 98.5 1.2E-06 2.5E-11 66.2 8.7 140 5-148 91-239 (307)
100 cd01750 GATase1_CobQ Type 1 gl 98.5 9.7E-08 2.1E-12 70.7 2.9 48 13-60 37-90 (194)
101 cd03130 GATase1_CobB Type 1 gl 98.4 2.8E-07 6E-12 68.4 3.5 47 13-59 40-92 (198)
102 PF07685 GATase_3: CobB/CobQ-l 98.3 1.5E-06 3.2E-11 62.3 6.5 48 13-60 7-60 (158)
103 TIGR00379 cobB cobyrinic acid 98.1 3.1E-05 6.8E-10 64.4 9.7 47 13-59 286-338 (449)
104 cd01653 GATase1 Type 1 glutami 97.9 1.5E-05 3.1E-10 51.9 3.6 44 12-55 45-92 (115)
105 PRK00784 cobyric acid synthase 97.9 1.1E-05 2.4E-10 67.7 3.3 47 13-59 290-342 (488)
106 TIGR00313 cobQ cobyric acid sy 97.9 8.7E-06 1.9E-10 68.1 2.6 47 13-59 284-336 (475)
107 PRK11780 isoprenoid biosynthes 97.8 3.7E-05 8E-10 57.9 5.4 55 5-59 77-145 (217)
108 PRK01077 cobyrinic acid a,c-di 97.8 3.5E-05 7.6E-10 64.1 4.6 48 13-60 287-340 (451)
109 cd03128 GAT_1 Type 1 glutamine 97.7 2.9E-05 6.3E-10 48.2 2.7 45 11-55 44-92 (92)
110 PRK13896 cobyrinic acid a,c-di 97.6 3.2E-05 6.9E-10 63.8 2.6 47 13-59 274-325 (433)
111 cd03169 GATase1_PfpI_1 Type 1 97.6 6.8E-05 1.5E-09 54.6 3.5 46 13-58 76-124 (180)
112 KOG1907 Phosphoribosylformylgl 97.6 0.00037 7.9E-09 61.2 8.2 134 13-148 1103-1285(1320)
113 cd03133 GATase1_ES1 Type 1 glu 97.6 0.00016 3.6E-09 54.2 5.2 55 6-60 75-143 (213)
114 cd03144 GATase1_ScBLP_like Typ 97.5 5.1E-05 1.1E-09 51.2 2.1 42 12-55 43-90 (114)
115 TIGR01382 PfpI intracellular p 97.5 7.5E-05 1.6E-09 53.5 3.2 52 7-58 54-108 (166)
116 cd03147 GATase1_Ydr533c_like T 97.5 0.00019 4.1E-09 54.6 4.5 52 7-58 88-143 (231)
117 cd03134 GATase1_PfpI_like A ty 97.4 0.00017 3.8E-09 51.6 3.9 47 12-58 61-110 (165)
118 COG1492 CobQ Cobyric acid synt 97.4 7.9E-05 1.7E-09 61.6 1.9 47 13-59 290-342 (486)
119 cd03140 GATase1_PfpI_3 Type 1 97.2 0.00049 1.1E-08 49.7 4.3 47 12-58 59-107 (170)
120 PF01965 DJ-1_PfpI: DJ-1/PfpI 97.2 8.1E-05 1.8E-09 52.5 -0.4 53 6-58 30-87 (147)
121 cd03141 GATase1_Hsp31_like Typ 97.1 0.0007 1.5E-08 51.1 4.0 52 7-58 84-139 (221)
122 cd03146 GAT1_Peptidase_E Type 97.1 0.00053 1.1E-08 51.4 3.3 49 6-58 75-130 (212)
123 COG0693 ThiJ Putative intracel 97.0 0.00071 1.5E-08 49.5 3.6 47 12-58 65-115 (188)
124 cd03137 GATase1_AraC_1 AraC tr 97.0 0.0014 3E-08 47.9 5.1 47 12-58 63-112 (187)
125 cd03135 GATase1_DJ-1 Type 1 gl 96.9 0.0013 2.7E-08 46.8 3.8 47 12-58 59-109 (163)
126 cd03132 GATase1_catalase Type 96.8 0.0018 3.8E-08 45.2 3.8 46 13-58 62-111 (142)
127 PRK04155 chaperone protein Hch 96.7 0.0024 5.2E-08 50.1 4.2 48 11-58 145-196 (287)
128 TIGR01383 not_thiJ DJ-1 family 96.6 0.0024 5.2E-08 46.2 3.7 47 12-58 62-112 (179)
129 cd03138 GATase1_AraC_2 AraC tr 96.6 0.0037 8E-08 45.9 4.6 46 13-58 69-120 (195)
130 PRK11574 oxidative-stress-resi 96.6 0.0043 9.2E-08 45.7 4.8 46 12-57 65-114 (196)
131 PF09825 BPL_N: Biotin-protein 96.6 0.034 7.3E-07 45.1 10.1 45 13-57 49-97 (367)
132 cd03148 GATase1_EcHsp31_like T 96.6 0.0041 8.9E-08 47.3 4.7 47 12-58 95-145 (232)
133 PF13278 DUF4066: Putative ami 96.5 0.0031 6.8E-08 45.1 3.5 47 12-58 60-109 (166)
134 cd03139 GATase1_PfpI_2 Type 1 96.4 0.007 1.5E-07 43.9 4.9 46 13-58 62-110 (183)
135 COG3442 Predicted glutamine am 96.4 0.00076 1.6E-08 50.2 -0.4 51 8-58 47-103 (250)
136 cd03136 GATase1_AraC_ArgR_like 95.8 0.018 3.9E-07 41.9 4.7 47 12-58 63-111 (185)
137 PRK09393 ftrA transcriptional 95.3 0.036 7.8E-07 44.1 5.0 46 13-58 75-122 (322)
138 KOG2764 Putative transcription 94.2 0.075 1.6E-06 40.1 3.9 49 8-56 62-114 (247)
139 PRK11249 katE hydroperoxidase 93.1 0.085 1.9E-06 46.6 3.0 46 13-58 658-707 (752)
140 PRK05282 (alpha)-aspartyl dipe 92.6 0.079 1.7E-06 40.4 2.0 48 13-60 79-131 (233)
141 COG4090 Uncharacterized protei 92.0 0.21 4.5E-06 34.3 3.2 52 8-61 79-133 (154)
142 cd03129 GAT1_Peptidase_E_like 91.0 0.26 5.6E-06 36.7 3.2 46 13-58 80-130 (210)
143 PF09897 DUF2124: Uncharacteri 88.8 0.11 2.5E-06 36.4 -0.2 39 11-50 78-119 (147)
144 PF02056 Glyco_hydro_4: Family 88.2 1.1 2.3E-05 32.9 4.5 52 4-59 126-177 (183)
145 COG4977 Transcriptional regula 86.5 1.7 3.6E-05 34.9 5.0 45 14-58 77-124 (328)
146 PLN02884 6-phosphofructokinase 86.5 0.84 1.8E-05 37.8 3.5 55 4-58 134-201 (411)
147 cd00363 PFK Phosphofructokinas 84.7 0.69 1.5E-05 37.3 2.2 54 5-58 84-150 (338)
148 PF06283 ThuA: Trehalose utili 84.3 15 0.00032 27.3 9.1 102 13-123 52-161 (217)
149 PTZ00286 6-phospho-1-fructokin 83.6 1 2.2E-05 37.9 2.7 55 4-58 167-234 (459)
150 TIGR02477 PFKA_PPi diphosphate 81.4 1.4 3E-05 37.9 2.8 54 5-58 153-221 (539)
151 PRK00561 ppnK inorganic polyph 80.9 1.6 3.6E-05 33.8 2.8 34 13-52 33-67 (259)
152 PRK07085 diphosphate--fructose 80.8 1.4 3.1E-05 37.8 2.7 54 5-58 156-224 (555)
153 PRK06555 pyrophosphate--fructo 80.6 1.6 3.4E-05 36.1 2.8 54 5-58 104-170 (403)
154 PRK14072 6-phosphofructokinase 80.6 1.3 2.8E-05 36.7 2.3 54 5-58 95-161 (416)
155 PRK06830 diphosphate--fructose 80.5 1.5 3.2E-05 36.7 2.6 55 4-58 163-230 (443)
156 PF09075 STb_secrete: Heat-sta 80.4 0.38 8.2E-06 25.7 -0.6 17 43-59 30-46 (48)
157 COG1797 CobB Cobyrinic acid a, 80.3 1 2.3E-05 37.3 1.7 142 13-164 288-450 (451)
158 PRK04761 ppnK inorganic polyph 80.2 1.8 3.9E-05 33.3 2.8 34 13-52 25-59 (246)
159 PRK09461 ansA cytoplasmic aspa 79.7 4.4 9.6E-05 32.6 5.0 47 2-48 222-270 (335)
160 PLN03028 pyrophosphate--fructo 78.6 2 4.2E-05 37.4 2.9 54 5-58 165-233 (610)
161 PLN02251 pyrophosphate-depende 78.5 2 4.4E-05 37.0 2.9 54 5-58 182-250 (568)
162 PRK04885 ppnK inorganic polyph 78.5 1.9 4.2E-05 33.5 2.6 34 13-52 35-71 (265)
163 COG3199 Predicted inorganic po 78.0 4.3 9.4E-05 32.7 4.4 43 6-55 93-136 (355)
164 PLN02564 6-phosphofructokinase 77.8 2 4.4E-05 36.3 2.6 55 4-58 167-234 (484)
165 COG4126 Hydantoin racemase [Am 77.6 5.9 0.00013 29.9 4.8 47 13-66 69-115 (230)
166 PRK03372 ppnK inorganic polyph 76.9 2.6 5.6E-05 33.5 2.9 34 13-52 72-106 (306)
167 COG3155 ElbB Uncharacterized p 76.9 3.4 7.5E-05 29.7 3.2 57 7-63 79-149 (217)
168 PRK01911 ppnK inorganic polyph 76.3 2.7 5.9E-05 33.2 2.9 34 13-52 64-98 (292)
169 cd00765 Pyrophosphate_PFK Phos 76.2 2.5 5.5E-05 36.3 2.8 54 5-58 158-226 (550)
170 COG4285 Uncharacterized conser 75.4 2.7 5.8E-05 31.7 2.5 47 15-66 51-101 (253)
171 PLN02929 NADH kinase 75.3 3.1 6.7E-05 33.0 2.9 33 13-51 64-96 (301)
172 PRK14077 pnk inorganic polypho 74.1 3.3 7.1E-05 32.6 2.8 34 13-52 64-98 (287)
173 PRK04539 ppnK inorganic polyph 73.4 3.5 7.5E-05 32.6 2.8 34 13-52 68-102 (296)
174 PRK02231 ppnK inorganic polyph 73.3 3.5 7.6E-05 32.2 2.8 33 13-51 42-75 (272)
175 PRK02649 ppnK inorganic polyph 73.3 3.2 6.9E-05 33.0 2.6 34 13-52 68-102 (305)
176 cd05298 GH4_GlvA_pagL_like Gly 73.1 9.1 0.0002 32.0 5.3 51 4-58 125-175 (437)
177 TIGR02069 cyanophycinase cyano 72.3 4.7 0.0001 31.0 3.3 46 13-58 82-132 (250)
178 PRK03378 ppnK inorganic polyph 72.1 3.8 8.2E-05 32.4 2.8 34 13-52 63-97 (292)
179 PRK14075 pnk inorganic polypho 70.2 4.3 9.3E-05 31.4 2.6 32 13-52 41-72 (256)
180 PF01513 NAD_kinase: ATP-NAD k 69.7 2.7 5.8E-05 32.9 1.4 39 8-52 71-110 (285)
181 PRK02155 ppnK NAD(+)/NADH kina 68.4 5.4 0.00012 31.5 2.9 34 13-52 63-97 (291)
182 cd03145 GAT1_cyanophycinase Ty 66.4 7.6 0.00017 29.1 3.3 46 13-58 83-133 (217)
183 PLN02935 Bifunctional NADH kin 66.3 5.9 0.00013 33.7 2.8 33 13-51 262-295 (508)
184 PRK03708 ppnK inorganic polyph 65.8 5.1 0.00011 31.4 2.3 34 13-52 57-90 (277)
185 cd00763 Bacterial_PFK Phosphof 65.2 4.7 0.0001 32.3 2.0 54 5-58 84-144 (317)
186 TIGR02482 PFKA_ATP 6-phosphofr 64.4 5.5 0.00012 31.6 2.2 54 5-58 83-144 (301)
187 smart00870 Asparaginase Aspara 64.4 13 0.00029 29.7 4.4 45 2-48 224-270 (323)
188 TIGR02483 PFK_mixed phosphofru 63.4 5.6 0.00012 31.9 2.2 54 5-58 86-146 (324)
189 PRK04183 glutamyl-tRNA(Gln) am 62.8 14 0.0003 30.8 4.4 46 1-48 300-347 (419)
190 COG1214 Inactive homolog of me 62.4 9.7 0.00021 28.7 3.2 43 13-56 58-102 (220)
191 TIGR02153 gatD_arch glutamyl-t 62.2 13 0.00028 30.8 4.1 46 1-48 287-334 (404)
192 cd00411 Asparaginase Asparagin 61.6 16 0.00034 29.3 4.4 45 2-48 222-268 (323)
193 PTZ00468 phosphofructokinase f 61.6 7.2 0.00016 36.9 2.7 53 6-58 189-256 (1328)
194 PF11051 Mannosyl_trans3: Mann 60.6 5.1 0.00011 31.2 1.4 37 15-51 2-38 (271)
195 PRK14076 pnk inorganic polypho 59.9 9 0.00019 33.2 2.9 34 13-52 348-382 (569)
196 PLN02493 probable peroxisomal 59.5 51 0.0011 27.0 7.0 60 7-66 239-307 (367)
197 cd00764 Eukaryotic_PFK Phospho 58.9 8.7 0.00019 34.5 2.7 53 5-57 470-536 (762)
198 PTZ00468 phosphofructokinase f 58.2 9.4 0.0002 36.2 2.9 53 5-57 792-864 (1328)
199 cd01139 TroA_f Periplasmic bin 57.4 33 0.00072 27.2 5.7 44 5-50 83-126 (342)
200 PLN02727 NAD kinase 56.7 10 0.00022 34.7 2.7 34 13-52 743-777 (986)
201 COG0061 nadF NAD kinase [Coenz 56.7 11 0.00023 29.6 2.6 34 12-51 54-88 (281)
202 TIGR00520 asnASE_II L-asparagi 55.4 22 0.00047 28.9 4.2 45 2-48 251-297 (349)
203 PLN02979 glycolate oxidase 55.0 68 0.0015 26.3 7.0 61 6-66 237-306 (366)
204 PRK00153 hypothetical protein; 54.9 58 0.0013 21.3 5.6 48 114-163 27-74 (104)
205 PRK03202 6-phosphofructokinase 54.5 7 0.00015 31.3 1.3 54 5-58 85-145 (320)
206 PRK14071 6-phosphofructokinase 53.6 16 0.00034 29.8 3.2 54 5-58 99-160 (360)
207 PF00710 Asparaginase: Asparag 53.2 17 0.00036 29.0 3.2 44 2-48 214-259 (313)
208 PRK01231 ppnK inorganic polyph 53.0 13 0.00027 29.5 2.5 34 13-52 62-96 (295)
209 PRK03501 ppnK inorganic polyph 51.6 14 0.0003 28.7 2.5 33 13-51 39-74 (264)
210 PF10230 DUF2305: Uncharacteri 50.7 11 0.00024 29.1 1.9 35 15-49 4-39 (266)
211 cd00636 TroA-like Helical back 50.6 57 0.0012 21.4 5.3 40 5-51 53-92 (148)
212 PRK01185 ppnK inorganic polyph 50.5 15 0.00033 28.7 2.6 31 13-51 52-82 (271)
213 smart00852 MoCF_biosynth Proba 50.3 32 0.0007 23.4 4.0 26 13-39 57-82 (135)
214 PRK11096 ansB L-asparaginase I 49.7 33 0.00071 27.9 4.4 44 3-48 246-291 (347)
215 TIGR00519 asnASE_I L-asparagin 49.7 34 0.00073 27.6 4.5 45 2-48 224-270 (336)
216 COG0252 AnsB L-asparaginase/ar 48.3 35 0.00075 27.8 4.3 44 3-48 243-289 (351)
217 cd03332 LMO_FMN L-Lactate 2-mo 47.7 95 0.0021 25.6 6.8 61 6-66 267-336 (383)
218 PRK03620 5-dehydro-4-deoxygluc 47.2 57 0.0012 25.7 5.4 46 5-50 33-85 (303)
219 PTZ00287 6-phosphofructokinase 46.0 17 0.00038 34.8 2.6 51 5-57 920-987 (1419)
220 PRK14048 ferrichrome/ferrioxam 45.9 73 0.0016 25.8 6.0 45 5-51 113-157 (374)
221 COG0420 SbcD DNA repair exonuc 45.8 61 0.0013 26.4 5.5 45 6-50 33-83 (390)
222 TIGR01918 various_sel_PB selen 45.0 53 0.0012 27.5 4.9 44 4-49 327-371 (431)
223 TIGR01012 Sa_S2_E_A ribosomal 44.0 36 0.00078 25.3 3.6 11 39-49 128-138 (196)
224 COG1597 LCB5 Sphingosine kinas 43.8 30 0.00064 27.4 3.3 24 4-27 49-72 (301)
225 TIGR02478 6PF1K_euk 6-phosphof 43.8 19 0.00042 32.3 2.4 54 5-58 470-537 (745)
226 PF03575 Peptidase_S51: Peptid 43.7 9.9 0.00021 26.7 0.6 42 13-54 35-81 (154)
227 cd01141 TroA_d Periplasmic bin 42.6 60 0.0013 23.1 4.6 38 5-48 61-98 (186)
228 TIGR02478 6PF1K_euk 6-phosphof 41.4 22 0.00047 32.0 2.4 26 4-29 85-110 (745)
229 PF07905 PucR: Purine cataboli 41.4 89 0.0019 20.9 5.0 14 7-20 66-79 (123)
230 PF02575 YbaB_DNA_bd: YbaB/Ebf 41.1 91 0.002 19.6 7.3 34 115-149 20-53 (93)
231 PF03437 BtpA: BtpA family; I 41.0 58 0.0013 25.3 4.4 40 10-51 169-208 (254)
232 TIGR01917 gly_red_sel_B glycin 40.2 71 0.0015 26.8 5.0 44 4-49 327-371 (431)
233 COG0205 PfkA 6-phosphofructoki 39.9 18 0.0004 29.3 1.6 52 6-57 87-146 (347)
234 PRK02645 ppnK inorganic polyph 39.8 30 0.00066 27.4 2.8 32 13-50 57-89 (305)
235 PRK15076 alpha-galactosidase; 39.8 78 0.0017 26.5 5.3 68 4-76 129-203 (431)
236 cd01147 HemV-2 Metal binding p 39.1 1.1E+02 0.0024 22.9 5.8 52 5-61 66-126 (262)
237 COG0434 SgcQ Predicted TIM-bar 39.1 67 0.0015 24.8 4.3 43 6-50 170-216 (263)
238 PRK09417 mogA molybdenum cofac 38.8 58 0.0013 24.1 4.0 31 13-44 66-97 (193)
239 KOG0283 WD40 repeat-containing 38.6 48 0.001 29.6 4.0 51 94-146 360-420 (712)
240 PF00365 PFK: Phosphofructokin 38.1 8.2 0.00018 30.3 -0.6 54 5-58 84-145 (282)
241 TIGR00259 thylakoid_BtpA membr 38.1 70 0.0015 24.9 4.5 46 12-58 170-217 (257)
242 PRK11197 lldD L-lactate dehydr 38.0 1.5E+02 0.0033 24.4 6.6 61 6-66 259-328 (381)
243 PF01070 FMN_dh: FMN-dependent 37.9 99 0.0021 25.2 5.5 62 6-67 239-309 (356)
244 COG1609 PurR Transcriptional r 37.5 70 0.0015 25.5 4.6 18 4-21 105-122 (333)
245 TIGR01319 glmL_fam conserved h 37.0 75 0.0016 26.9 4.7 44 3-46 110-155 (463)
246 COG0391 Uncharacterized conser 36.6 66 0.0014 25.9 4.2 39 5-49 183-228 (323)
247 PF13941 MutL: MutL protein 36.4 73 0.0016 27.0 4.6 44 3-46 114-159 (457)
248 PF13380 CoA_binding_2: CoA bi 35.9 94 0.002 20.7 4.4 44 4-53 70-114 (116)
249 TIGR00315 cdhB CO dehydrogenas 35.8 31 0.00067 24.8 2.1 35 12-49 99-133 (162)
250 KOG1273 WD40 repeat protein [G 35.1 45 0.00097 26.9 3.0 19 127-147 100-118 (405)
251 cd06292 PBP1_LacI_like_10 Liga 35.0 83 0.0018 23.5 4.5 19 4-22 46-64 (273)
252 PTZ00287 6-phosphofructokinase 34.9 33 0.00072 33.0 2.6 54 5-58 263-331 (1419)
253 cd02067 B12-binding B12 bindin 34.9 58 0.0013 21.4 3.3 18 5-22 42-59 (119)
254 cd06309 PBP1_YtfQ_like Peripla 34.7 1E+02 0.0022 23.1 5.0 19 4-22 46-64 (273)
255 COG1983 PspC Putative stress-r 34.4 22 0.00048 21.7 1.0 24 35-61 4-27 (70)
256 cd01425 RPS2 Ribosomal protein 34.2 63 0.0014 23.7 3.6 32 12-49 126-157 (193)
257 cd01575 PBP1_GntR Ligand-bindi 34.2 1.1E+02 0.0023 22.7 5.0 20 4-23 46-65 (268)
258 cd00952 CHBPH_aldolase Trans-o 34.0 73 0.0016 25.3 4.2 47 4-50 33-85 (309)
259 PTZ00254 40S ribosomal protein 33.6 65 0.0014 24.9 3.6 11 39-49 138-148 (249)
260 COG4242 CphB Cyanophycinase an 32.6 73 0.0016 24.8 3.7 45 13-57 106-155 (293)
261 KOG3974 Predicted sugar kinase 32.5 69 0.0015 25.1 3.6 52 4-56 93-146 (306)
262 TIGR03725 bact_YeaZ universal 32.1 30 0.00064 25.5 1.6 45 13-58 54-100 (202)
263 PF00532 Peripla_BP_1: Peripla 31.7 1.2E+02 0.0025 23.5 4.9 19 4-22 47-65 (279)
264 TIGR02637 RhaS rhamnose ABC tr 31.4 90 0.002 24.0 4.3 18 4-21 47-64 (302)
265 COG1486 CelF Alpha-galactosida 31.3 1.1E+02 0.0024 25.8 4.8 55 4-62 128-186 (442)
266 PF01606 Arteri_env: Arterivir 31.3 7.1 0.00015 28.3 -1.8 11 137-147 118-128 (214)
267 COG1454 EutG Alcohol dehydroge 31.2 68 0.0015 26.4 3.6 29 7-36 80-108 (377)
268 PRK11340 phosphodiesterase Yae 30.9 1.1E+02 0.0024 23.6 4.6 42 7-48 74-118 (271)
269 cd08180 PDD 1,3-propanediol de 30.8 67 0.0015 25.6 3.5 20 11-31 76-95 (332)
270 COG2247 LytB Putative cell wal 30.7 53 0.0011 26.4 2.7 25 3-27 65-89 (337)
271 PLN02417 dihydrodipicolinate s 30.6 1.5E+02 0.0033 23.0 5.4 48 5-52 27-80 (280)
272 cd00951 KDGDH 5-dehydro-4-deox 30.2 1.1E+02 0.0024 23.9 4.6 45 5-49 26-77 (289)
273 cd08166 MPP_Cdc1_like_1 unchar 30.0 70 0.0015 23.7 3.2 46 4-49 33-87 (195)
274 PF08459 UvrC_HhH_N: UvrC Heli 29.5 27 0.00059 24.9 0.9 34 13-49 79-112 (155)
275 cd01541 PBP1_AraR Ligand-bindi 28.8 1.6E+02 0.0034 22.0 5.2 21 4-24 46-66 (273)
276 TIGR01819 F420_cofD LPPG:FO 2- 28.6 79 0.0017 25.2 3.4 39 6-49 177-219 (297)
277 PF04024 PspC: PspC domain; I 28.4 20 0.00043 21.2 0.1 22 38-62 6-27 (61)
278 cd07385 MPP_YkuE_C Bacillus su 28.3 1.7E+02 0.0038 21.3 5.2 44 5-48 24-69 (223)
279 cd05197 GH4_glycoside_hydrolas 28.3 1.5E+02 0.0033 24.8 5.3 54 4-61 125-182 (425)
280 cd08170 GlyDH Glycerol dehydro 28.2 82 0.0018 25.3 3.6 35 10-49 74-108 (351)
281 TIGR03659 IsdE heme ABC transp 28.2 2E+02 0.0044 22.1 5.8 49 5-60 83-139 (289)
282 cd00764 Eukaryotic_PFK Phospho 28.2 48 0.001 30.0 2.4 25 5-29 89-113 (762)
283 cd01451 vWA_Magnesium_chelatas 28.0 2E+02 0.0044 20.3 5.4 53 15-67 101-165 (178)
284 COG0710 AroD 3-dehydroquinate 27.8 90 0.002 23.8 3.5 42 12-53 145-187 (231)
285 PLN00158 histone H2B; Provisio 27.7 74 0.0016 21.5 2.7 28 140-167 37-64 (116)
286 smart00427 H2B Histone H2B. 27.5 71 0.0015 20.5 2.5 26 142-167 13-38 (89)
287 TIGR02313 HpaI-NOT-DapA 2,4-di 27.3 1.3E+02 0.0027 23.7 4.4 45 5-49 26-77 (294)
288 cd01148 TroA_a Metal binding p 27.2 1.3E+02 0.0029 23.0 4.5 41 6-48 72-112 (284)
289 PRK13606 LPPG:FO 2-phospho-L-l 26.6 1.1E+02 0.0025 24.4 4.0 39 6-49 180-222 (303)
290 PRK04020 rps2P 30S ribosomal p 26.5 97 0.0021 23.2 3.4 11 39-49 134-144 (204)
291 cd06300 PBP1_ABC_sugar_binding 26.2 1.3E+02 0.0029 22.4 4.3 18 5-22 52-69 (272)
292 PTZ00463 histone H2B; Provisio 25.6 83 0.0018 21.3 2.6 27 141-167 39-65 (117)
293 cd06316 PBP1_ABC_sugar_binding 25.5 1.6E+02 0.0035 22.4 4.7 18 4-21 47-64 (294)
294 PF02662 FlpD: Methyl-viologen 25.4 1.1E+02 0.0023 20.8 3.3 26 2-27 41-67 (124)
295 cd06314 PBP1_tmGBP Periplasmic 25.3 1.5E+02 0.0033 22.1 4.6 19 4-22 46-64 (271)
296 TIGR02638 lactal_redase lactal 25.1 93 0.002 25.4 3.4 10 45-54 90-99 (379)
297 cd08187 BDH Butanol dehydrogen 24.8 98 0.0021 25.3 3.5 23 9-32 82-104 (382)
298 cd06284 PBP1_LacI_like_6 Ligan 24.6 1.3E+02 0.0028 22.2 4.0 38 5-49 47-84 (267)
299 COG1856 Uncharacterized homolo 24.6 1.6E+02 0.0035 22.7 4.2 43 7-49 49-93 (275)
300 COG0329 DapA Dihydrodipicolina 24.6 1.4E+02 0.003 23.6 4.2 46 5-50 30-82 (299)
301 TIGR03249 KdgD 5-dehydro-4-deo 24.5 2.3E+02 0.0051 22.1 5.5 45 5-49 31-81 (296)
302 cd06305 PBP1_methylthioribose_ 24.5 1.5E+02 0.0033 22.0 4.4 19 4-22 46-64 (273)
303 cd08193 HVD 5-hydroxyvalerate 24.5 1E+02 0.0022 25.1 3.5 9 44-52 86-94 (376)
304 TIGR00147 lipid kinase, YegS/R 24.3 1.5E+02 0.0032 23.0 4.4 44 11-60 55-102 (293)
305 PF03932 CutC: CutC family; I 23.8 1.4E+02 0.0031 22.2 3.9 42 4-45 131-173 (201)
306 COG1879 RbsB ABC-type sugar tr 23.8 1.7E+02 0.0037 22.8 4.6 17 6-22 84-100 (322)
307 TIGR00683 nanA N-acetylneurami 23.4 1.7E+02 0.0036 23.0 4.5 45 5-49 26-77 (290)
308 PF00318 Ribosomal_S2: Ribosom 23.4 1.2E+02 0.0027 22.5 3.6 30 14-49 144-173 (211)
309 TIGR02667 moaB_proteo molybden 23.4 2.1E+02 0.0046 20.3 4.6 13 13-25 63-75 (163)
310 cd06310 PBP1_ABC_sugar_binding 23.3 1.6E+02 0.0035 21.9 4.3 18 5-22 49-66 (273)
311 PRK09423 gldA glycerol dehydro 23.2 92 0.002 25.3 3.1 39 7-50 78-116 (366)
312 cd06320 PBP1_allose_binding Pe 23.2 1.6E+02 0.0034 22.0 4.3 39 6-48 50-88 (275)
313 PRK04176 ribulose-1,5-biphosph 23.1 66 0.0014 24.7 2.1 23 3-25 14-37 (257)
314 cd06301 PBP1_rhizopine_binding 23.1 1.7E+02 0.0036 21.8 4.3 19 4-22 47-65 (272)
315 PF01497 Peripla_BP_2: Peripla 23.0 2.7E+02 0.0058 20.3 5.4 52 5-62 52-112 (238)
316 PF13407 Peripla_BP_4: Peripla 23.0 1.8E+02 0.0038 21.5 4.5 43 5-51 47-89 (257)
317 PF00072 Response_reg: Respons 22.9 1.8E+02 0.0038 18.1 3.9 43 6-49 36-78 (112)
318 cd07399 MPP_YvnB Bacillus subt 22.9 1.1E+02 0.0023 22.7 3.1 46 7-52 29-79 (214)
319 cd06295 PBP1_CelR Ligand bindi 22.8 2.1E+02 0.0046 21.3 4.9 17 7-23 58-74 (275)
320 PF09419 PGP_phosphatase: Mito 22.6 2.3E+02 0.005 20.5 4.7 26 5-30 67-94 (168)
321 cd01574 PBP1_LacI Ligand-bindi 22.6 1.8E+02 0.0039 21.5 4.4 19 4-22 47-65 (264)
322 COG1058 CinA Predicted nucleot 22.5 1.9E+02 0.004 22.5 4.4 18 13-30 60-77 (255)
323 cd04736 MDH_FMN Mandelate dehy 22.3 3.9E+02 0.0085 21.9 6.4 59 7-66 251-317 (361)
324 cd06299 PBP1_LacI_like_13 Liga 22.3 2.4E+02 0.0052 20.8 5.1 19 5-23 47-65 (265)
325 cd07186 CofD_like LPPG:FO 2-ph 22.3 1.4E+02 0.0031 23.8 3.8 40 6-49 178-222 (303)
326 TIGR00292 thiazole biosynthesi 22.3 71 0.0015 24.5 2.1 22 3-24 10-32 (254)
327 cd07766 DHQ_Fe-ADH Dehydroquin 22.3 1E+02 0.0022 24.4 3.1 38 9-49 74-111 (332)
328 PF00701 DHDPS: Dihydrodipicol 21.8 1.8E+02 0.0039 22.5 4.4 48 4-51 26-79 (289)
329 PRK05299 rpsB 30S ribosomal pr 21.8 1.4E+02 0.0029 23.2 3.6 31 13-49 157-187 (258)
330 cd08179 NADPH_BDH NADPH-depend 21.8 1.5E+02 0.0032 24.1 4.0 7 45-51 85-91 (375)
331 cd06282 PBP1_GntR_like_2 Ligan 21.8 2E+02 0.0044 21.1 4.6 40 5-49 47-86 (266)
332 PRK15408 autoinducer 2-binding 21.7 1.6E+02 0.0035 23.5 4.1 18 4-21 71-88 (336)
333 TIGR03868 F420-O_ABCperi propo 21.7 1.7E+02 0.0038 22.3 4.3 42 5-48 70-111 (287)
334 cd00502 DHQase_I Type I 3-dehy 21.7 1.1E+02 0.0023 22.9 3.0 41 13-53 143-185 (225)
335 PRK13016 dihydroxy-acid dehydr 21.6 1.6E+02 0.0036 25.7 4.3 52 11-62 138-217 (577)
336 cd06281 PBP1_LacI_like_5 Ligan 21.6 2.4E+02 0.0052 21.0 5.0 19 5-23 47-65 (269)
337 CHL00067 rps2 ribosomal protei 21.5 1.2E+02 0.0026 23.0 3.2 30 13-49 161-191 (230)
338 PRK04147 N-acetylneuraminate l 21.2 2.8E+02 0.006 21.7 5.3 43 5-47 29-78 (293)
339 PTZ00340 O-sialoglycoprotein e 21.2 75 0.0016 25.8 2.1 45 13-57 70-118 (345)
340 TIGR02855 spore_yabG sporulati 21.2 3.5E+02 0.0075 21.4 5.6 67 1-67 141-226 (283)
341 TIGR02634 xylF D-xylose ABC tr 21.1 1.6E+02 0.0036 22.7 4.0 18 4-21 45-62 (302)
342 PF07271 Cytadhesin_P30: Cytad 21.0 55 0.0012 25.6 1.2 22 42-63 69-90 (279)
343 PF00940 RNA_pol: DNA-dependen 20.9 61 0.0013 26.9 1.6 20 41-60 85-106 (405)
344 COG2129 Predicted phosphoester 20.9 2E+02 0.0043 22.0 4.1 55 4-58 21-83 (226)
345 cd05296 GH4_P_beta_glucosidase 20.8 2E+02 0.0044 24.0 4.6 55 4-63 126-184 (419)
346 cd06283 PBP1_RegR_EndR_KdgR_li 20.8 2.2E+02 0.0049 20.9 4.6 18 5-22 47-64 (267)
347 cd01538 PBP1_ABC_xylose_bindin 20.7 2E+02 0.0042 21.9 4.3 40 5-48 47-86 (288)
348 cd06298 PBP1_CcpA_like Ligand- 20.5 2.3E+02 0.005 20.9 4.6 19 4-22 46-64 (268)
349 cd06321 PBP1_ABC_sugar_binding 20.5 1.9E+02 0.0041 21.5 4.2 18 5-22 49-66 (271)
350 PF07505 Gp37_Gp68: Phage prot 20.5 1.8E+02 0.0039 22.7 4.0 40 12-51 187-230 (261)
351 cd06290 PBP1_LacI_like_9 Ligan 20.4 2.2E+02 0.0049 21.0 4.6 19 4-22 46-64 (265)
352 PF14851 FAM176: FAM176 family 20.4 26 0.00056 25.0 -0.6 21 45-65 27-47 (153)
353 PRK03170 dihydrodipicolinate s 20.4 2.1E+02 0.0045 22.3 4.4 46 4-49 26-78 (292)
354 PRK03670 competence damage-ind 20.3 2.5E+02 0.0055 21.7 4.8 17 13-29 60-76 (252)
355 KOG0721 Molecular chaperone (D 20.3 95 0.0021 23.6 2.3 50 114-165 100-149 (230)
356 TIGR03436 acidobact_VWFA VWFA- 20.1 1.8E+02 0.0039 22.6 4.0 49 16-65 168-237 (296)
357 cd01545 PBP1_SalR Ligand-bindi 20.1 2.7E+02 0.0058 20.6 4.9 18 6-23 49-66 (270)
358 cd06322 PBP1_ABC_sugar_binding 20.1 2.1E+02 0.0046 21.1 4.4 18 5-22 47-64 (267)
359 PF14340 DUF4395: Domain of un 20.1 38 0.00082 23.3 0.2 11 46-56 116-126 (131)
360 PRK06455 riboflavin synthase; 20.1 1.7E+02 0.0037 20.9 3.5 15 11-25 54-68 (155)
361 PF05582 Peptidase_U57: YabG p 20.1 3.5E+02 0.0077 21.4 5.5 67 1-67 142-227 (287)
362 COG0052 RpsB Ribosomal protein 20.0 1.4E+02 0.003 23.2 3.2 11 39-49 176-186 (252)
363 cd07404 MPP_MS158 Microscilla 20.0 1.8E+02 0.0038 20.2 3.7 38 10-47 23-60 (166)
No 1
>PLN02335 anthranilate synthase
Probab=100.00 E-value=5.1e-40 Score=247.25 Aligned_cols=165 Identities=85% Similarity=1.363 Sum_probs=142.5
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
.+++..+++|+|||+|||+++++.+...+.+++.+.++|+||||+|||+|+.++||++.+.+.+..+|.+.++.......
T Consensus 55 ~~~~~~~~~d~iVisgGPg~p~d~~~~~~~~~~~~~~~PiLGIClG~QlLa~alGg~v~~~~~~~~~G~~~~v~~~~~~~ 134 (222)
T PLN02335 55 VEELKRKNPRGVLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSPVHYDEKGE 134 (222)
T ss_pred HHHHHhcCCCEEEEcCCCCChhhccchHHHHHHhCCCCCEEEecHHHHHHHHHhCCEEEeCCCccccCceeeeEECCCCC
Confidence 34555668999999999999998877777777778889999999999999999999999987656688888777665446
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 165 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 165 (174)
+++|.+++..+.++++|+++++++++++..++++|+++++.|+++++++++++||+|||||+..+++|..||+||++.+.
T Consensus 135 ~~Lf~~l~~~~~v~~~H~~~v~~~~lp~~~~~v~a~~~~~~v~ai~~~~~~~i~GvQfHPE~~~~~~g~~i~~nF~~~~~ 214 (222)
T PLN02335 135 EGLFSGLPNPFTAGRYHSLVIEKDTFPSDELEVTAWTEDGLIMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKIIE 214 (222)
T ss_pred ChhhhCCCCCCEEEechhheEecccCCCCceEEEEEcCCCCEEEEEecCCCCEEEEEeCCCCCCChhHHHHHHHHHHHHH
Confidence 78999999999999999999986666655599999999999999999988779999999999888999999999999887
Q ss_pred HHHHh
Q 030626 166 RKEAA 170 (174)
Q Consensus 166 ~~~~~ 170 (174)
++++.
T Consensus 215 ~~~~~ 219 (222)
T PLN02335 215 KKESE 219 (222)
T ss_pred hhccc
Confidence 66554
No 2
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=6.5e-39 Score=230.50 Aligned_cols=150 Identities=53% Similarity=0.950 Sum_probs=134.7
Q ss_pred HHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCC
Q 030626 8 SYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG 87 (174)
Q Consensus 8 ~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~ 87 (174)
++.+.++|+||||+|||+|.+.+...+.|++...++|+||||+|||.|++++||+|.+.+ ...||....+... .+.
T Consensus 40 ~~~~~~pd~iviSPGPG~P~d~G~~~~~i~~~~~~~PiLGVCLGHQai~~~fGg~V~~a~-~~~HGK~s~i~h~---g~~ 115 (191)
T COG0512 40 LIEALKPDAIVISPGPGTPKDAGISLELIRRFAGRIPILGVCLGHQAIAEAFGGKVVRAK-EPMHGKTSIITHD---GSG 115 (191)
T ss_pred HHhhcCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECccHHHHHHHhCCEEEecC-CCcCCeeeeeecC---Ccc
Confidence 567778999999999999999999999999888889999999999999999999999998 4568988744432 578
Q ss_pred cccCCCCceeecccccceecccCCCCCCcEEEEEcCC-CceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626 88 LLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163 (174)
Q Consensus 88 l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 163 (174)
+|+++++++.+.-+|+..+.+++++ +.++++|+++| +.|+|++++++| ++|+|||||...++.|.+|++||++.
T Consensus 116 iF~glp~~f~v~RYHSLvv~~~~lP-~~l~vtA~~~d~~~IMai~h~~~p-i~gvQFHPESilT~~G~~il~Nfl~~ 190 (191)
T COG0512 116 LFAGLPNPFTVTRYHSLVVDPETLP-EELEVTAESEDGGVIMAVRHKKLP-IYGVQFHPESILTEYGHRILENFLRL 190 (191)
T ss_pred cccCCCCCCEEEeeEEEEecCCCCC-CceEEEEEeCCCCEEEEEeeCCCC-EEEEecCCccccccchHHHHHHHHhh
Confidence 9999999999999999999876654 89999999966 599999999998 99999999999999999999999975
No 3
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=2.4e-38 Score=232.78 Aligned_cols=151 Identities=45% Similarity=0.870 Sum_probs=129.4
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
.+++...++|+|||+||||++.+.....+.++.+..++|+||||+|||+|+.++||++.+... ..+|.+.++... .
T Consensus 36 ~~~~~~~~~d~iils~GPg~p~~~~~~~~~~~~~~~~~PiLGIClG~Q~la~a~Gg~v~~~~~-~~~g~~~~v~~~---~ 111 (187)
T PRK08007 36 LADIDALKPQKIVISPGPCTPDEAGISLDVIRHYAGRLPILGVCLGHQAMAQAFGGKVVRAAK-VMHGKTSPITHN---G 111 (187)
T ss_pred HHHHHhcCCCEEEEcCCCCChHHCCccHHHHHHhcCCCCEEEECHHHHHHHHHcCCEEEeCCC-cccCCceEEEEC---C
Confidence 466766789999999999999988766666666678899999999999999999999999874 347766655543 4
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 162 (174)
+++|++++..+.++++|++.++..+ ++++++++|+++++.++|+++.+++ ++|+|||||+.+++.|..||+||++
T Consensus 112 ~~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~v~a~~~~~~i~a~~~~~~~-i~GvQfHPE~~~t~~G~~il~nFl~ 186 (187)
T PRK08007 112 EGVFRGLANPLTVTRYHSLVVEPDS-LPACFEVTAWSETREIMGIRHRQWD-LEGVQFHPESILSEQGHQLLANFLH 186 (187)
T ss_pred CCcccCCCCCcEEEEcchhEEccCC-CCCCeEEEEEeCCCcEEEEEeCCCC-EEEEEeCCcccCCcchHHHHHHHhh
Confidence 5689999888999999999996433 5689999999999999999998876 9999999999889999999999986
No 4
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=100.00 E-value=7.6e-38 Score=231.27 Aligned_cols=155 Identities=46% Similarity=0.859 Sum_probs=131.9
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
.+++.+.++|+|||+|||+++++.....+.++....++|+||||+|||+|+.++||+|.+.+. ..+|.+..+.. ..
T Consensus 36 ~~~~~~~~~d~iIlsgGP~~p~~~~~~~~~i~~~~~~~PvLGIClG~Qlla~~lGg~V~~~~~-~~~G~~~~i~~---~~ 111 (195)
T PRK07649 36 ISDIENMKPDFLMISPGPCSPNEAGISMEVIRYFAGKIPIFGVCLGHQSIAQVFGGEVVRAER-LMHGKTSLMHH---DG 111 (195)
T ss_pred HHHHhhCCCCEEEECCCCCChHhCCCchHHHHHhcCCCCEEEEcHHHHHHHHHcCCEEeeCCC-cccCCeEEEEE---CC
Confidence 456666789999999999999988776666666677899999999999999999999999874 45777655433 24
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 165 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 165 (174)
+++|+++++.+.++++|++.+..++ ++++++++|+++++.++|+++++.+ +||+|||||+..++.|..|++||++.+.
T Consensus 112 ~~lf~~~~~~~~v~~~H~~~v~~~~-lp~~~~~~a~s~~~~v~a~~~~~~~-i~gvQFHPE~~~t~~g~~il~nfl~~~~ 189 (195)
T PRK07649 112 KTIFSDIPNPFTATRYHSLIVKKET-LPDCLEVTSWTEEGEIMAIRHKTLP-IEGVQFHPESIMTSHGKELLQNFIRKYS 189 (195)
T ss_pred ChhhcCCCCCCEEEEechheEeccc-CCCCeEEEEEcCCCcEEEEEECCCC-EEEEEECCCCCCCccHHHHHHHHHHHhH
Confidence 6799999999999999999985333 4689999999999999999999876 9999999999888899999999999775
Q ss_pred H
Q 030626 166 R 166 (174)
Q Consensus 166 ~ 166 (174)
.
T Consensus 190 ~ 190 (195)
T PRK07649 190 P 190 (195)
T ss_pred h
Confidence 4
No 5
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=100.00 E-value=6e-37 Score=225.58 Aligned_cols=151 Identities=46% Similarity=0.835 Sum_probs=127.3
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
.+++.+.++|||||+||||++.+.....+.+++...++|+||||+|||+|+.++||++.+.+ ...+|.+..+... .
T Consensus 36 ~~~~~~~~~d~iilsgGpg~p~~~~~~~~~i~~~~~~~PvLGIC~G~Qll~~~~GG~v~~~~-~~~~g~~~~v~~~---~ 111 (188)
T TIGR00566 36 LQEIEALLPLLIVISPGPCTPNEAGISLEAIRHFAGKLPILGVCLGHQAMGQAFGGDVVRAN-TVMHGKTSEIEHN---G 111 (188)
T ss_pred HHHHHhcCCCEEEEcCCCCChhhcchhHHHHHHhccCCCEEEECHHHHHHHHHcCCEEeeCC-CccccceEEEEEC---C
Confidence 56777788999999999999987665556666566789999999999999999999999986 4457776666543 4
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC-ceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 162 (174)
++++.++++.+.++++|++.+.++. ++++++++|+++++ .++|+++++++ +||+|||||+..++.|.+||+||++
T Consensus 112 ~~~~~~l~~~~~v~~~H~~~v~~~~-l~~~~~v~a~s~~~~~v~a~~~~~~~-i~gvQfHPE~~~t~~G~~il~nfl~ 187 (188)
T TIGR00566 112 AGIFRGLFNPLTATRYHSLVVEPET-LPTCFPVTAWEEENIEIMAIRHRDLP-LEGVQFHPESILSEQGHQLLANFLH 187 (188)
T ss_pred CccccCCCCCcEEEEcccceEeccc-CCCceEEEEEcCCCCEEEEEEeCCCC-EEEEEeCCCccCCcccHHHHHHHHh
Confidence 5678888778899999999996433 46789999999875 99999999887 9999999999889999999999985
No 6
>PRK05670 anthranilate synthase component II; Provisional
Probab=100.00 E-value=8.7e-37 Score=225.07 Aligned_cols=152 Identities=52% Similarity=0.947 Sum_probs=127.7
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCC
Q 030626 7 VSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED 86 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~ 86 (174)
+++..+++|||||+|||+++++.....+.+++...++|+||||+|||+|+.++||++.+.+. ..+|.+.++.. ..+
T Consensus 37 ~~~~~~~~dglIlsgGpg~~~d~~~~~~~l~~~~~~~PvLGIClG~Qlla~alGg~v~~~~~-~~~g~~~~v~~---~~~ 112 (189)
T PRK05670 37 EEIEALNPDAIVLSPGPGTPAEAGISLELIREFAGKVPILGVCLGHQAIGEAFGGKVVRAKE-IMHGKTSPIEH---DGS 112 (189)
T ss_pred HHHHhCCCCEEEEcCCCCChHHcchHHHHHHHhcCCCCEEEECHHHHHHHHHhCCEEEecCC-cccCceeEEEe---CCC
Confidence 45556679999999999999887666666666667899999999999999999999998874 34666555542 356
Q ss_pred CcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHH
Q 030626 87 GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164 (174)
Q Consensus 87 ~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~ 164 (174)
++|.+++..+.++++|++.+.+.+ ++++++++|+++++.++|+++++++ +||+|||||+..++++.+||++|++.+
T Consensus 113 ~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~~la~s~~~~i~a~~~~~~~-~~gvQfHPE~~~~~~g~~i~~~F~~~~ 188 (189)
T PRK05670 113 GIFAGLPNPFTVTRYHSLVVDRES-LPDCLEVTAWTDDGEIMGVRHKELP-IYGVQFHPESILTEHGHKLLENFLELA 188 (189)
T ss_pred chhccCCCCcEEEcchhheecccc-CCCceEEEEEeCCCcEEEEEECCCC-EEEEeeCCCcCCCcchHHHHHHHHHhh
Confidence 799999888999999999995323 4689999999999999999998776 999999999977889999999999864
No 7
>CHL00101 trpG anthranilate synthase component 2
Probab=100.00 E-value=1.1e-36 Score=224.56 Aligned_cols=152 Identities=56% Similarity=1.000 Sum_probs=126.5
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCC
Q 030626 7 VSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED 86 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~ 86 (174)
+++...++|||||+|||+++++.......+.....++|+||||+|||+|+.++||+|.+.+. ..+|.+..+.. ..+
T Consensus 37 ~~~~~~~~dgiiisgGpg~~~~~~~~~~i~~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~-~~~g~~~~~~~---~~~ 112 (190)
T CHL00101 37 SKIKNLNIRHIIISPGPGHPRDSGISLDVISSYAPYIPILGVCLGHQSIGYLFGGKIIKAPK-PMHGKTSKIYH---NHD 112 (190)
T ss_pred HHHhhCCCCEEEECCCCCChHHCcchHHHHHHhcCCCcEEEEchhHHHHHHHhCCEEEECCC-cccCceeeEee---CCc
Confidence 45555689999999999999876544444444678899999999999999999999999874 34777765543 356
Q ss_pred CcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626 87 GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163 (174)
Q Consensus 87 ~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 163 (174)
++|.+++..+.++++|++.|+..+ ++++++++|+++++.++++++++++++||+|||||+..++.|.+|++||++.
T Consensus 113 ~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~vla~s~~~~v~a~~~~~~~~i~gvQfHPE~~~~~~g~~l~~nf~~~ 188 (190)
T CHL00101 113 DLFQGLPNPFTATRYHSLIIDPLN-LPSPLEITAWTEDGLIMACRHKKYKMLRGIQFHPESLLTTHGQQILRNFLSL 188 (190)
T ss_pred HhhccCCCceEEEcchhheeeccc-CCCceEEEEEcCCCcEEEEEeCCCCCEEEEEeCCccCCChhHHHHHHHHHhh
Confidence 799999988999999999996423 4578999999999999999999865599999999997788999999999874
No 8
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=1.7e-36 Score=223.91 Aligned_cols=151 Identities=44% Similarity=0.858 Sum_probs=125.1
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
.+++.++++|+|||+|||+++++.+...+.+++...++|+||||+|||+|+.++||++.+.+. .++|....... ..
T Consensus 36 ~~~~~~~~~~~iilsgGP~~~~~~~~~~~~i~~~~~~~PiLGIC~G~Qlla~~~GG~v~~~~~-~~~G~~~~~~~---~~ 111 (191)
T PRK06774 36 LTDIEQLAPSHLVISPGPCTPNEAGISLAVIRHFADKLPILGVCLGHQALGQAFGARVVRARQ-VMHGKTSAICH---SG 111 (191)
T ss_pred HHHHHhcCCCeEEEcCCCCChHhCCCchHHHHHhcCCCCEEEECHHHHHHHHHhCCEEEeCCc-ceecceEEEEe---cC
Confidence 567877889999999999999988777677766778899999999999999999999999874 55666554433 35
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC----ceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG----LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 161 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~----~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 161 (174)
+++|++++..+.++++|++.+...+ ++++++++|+++++ .++++++++.+ +||+|||||+.+++.|.+||+||+
T Consensus 112 ~~lf~~l~~~~~v~~~Hs~~v~~~~-lp~~~~vlA~s~~d~~~~~i~~~~~~~~~-i~GvQfHPE~~~~~~G~~i~~nf~ 189 (191)
T PRK06774 112 QGVFRGLNQPLTVTRYHSLVIAADS-LPGCFELTAWSERGGEMDEIMGIRHRTLP-LEGVQFHPESILSEQGHQLLDNFL 189 (191)
T ss_pred chhhcCCCCCcEEEEeCcceeeccC-CCCCeEEEEEeCCCCCcceEEEEEeCCCC-EEEEEECCCcCCCccHHHHHHHHh
Confidence 6789999888999999999995323 46889999998743 46677877765 999999999988899999999998
Q ss_pred H
Q 030626 162 K 162 (174)
Q Consensus 162 ~ 162 (174)
+
T Consensus 190 ~ 190 (191)
T PRK06774 190 K 190 (191)
T ss_pred h
Confidence 5
No 9
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=100.00 E-value=1.2e-35 Score=219.13 Aligned_cols=145 Identities=34% Similarity=0.593 Sum_probs=123.1
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcccCC
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGL 92 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 92 (174)
.+|+|||+|||+++.+.....+.+++...++|+||||+|||+|+.++||+|.+.+. ..+|.+..+... .++++|+++
T Consensus 43 ~~d~iIi~gGp~~~~~~~~~~~~i~~~~~~~PiLGIClG~Qlla~~~Gg~V~~~~~-~~~g~~~~v~~~--~~~~l~~~~ 119 (190)
T PRK06895 43 NFSHILISPGPDVPRAYPQLFAMLERYHQHKSILGVCLGHQTLCEFFGGELYNLNN-VRHGQQRPLKVR--SNSPLFDGL 119 (190)
T ss_pred cCCEEEECCCCCChHHhhHHHHHHHHhcCCCCEEEEcHHHHHHHHHhCCeEeecCC-CccCceEEEEEC--CCChhhhcC
Confidence 58999999999987555555566666677899999999999999999999988763 457777655443 467899999
Q ss_pred CCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626 93 SNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162 (174)
Q Consensus 93 ~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 162 (174)
++.+.++++|++.++..+ ++.++.+++.++++.+++++++++| +||+|||||+.+++.|..|++||++
T Consensus 120 ~~~~~v~~~Hs~~v~~~~-lp~~l~~~a~~~~~~i~a~~~~~~p-i~GvQFHPE~~~~~~g~~il~nf~~ 187 (190)
T PRK06895 120 PEEFNIGLYHSWAVSEEN-FPTPLEITAVCDENVVMAMQHKTLP-IYGVQFHPESYISEFGEQILRNWLA 187 (190)
T ss_pred CCceEEEcchhheecccc-cCCCeEEEEECCCCcEEEEEECCCC-EEEEEeCCCcCCCcchHHHHHHHHh
Confidence 999999999999997533 3478999999999999999999877 9999999999889999999999987
No 10
>PRK05637 anthranilate synthase component II; Provisional
Probab=100.00 E-value=2.6e-35 Score=219.44 Aligned_cols=154 Identities=31% Similarity=0.540 Sum_probs=123.9
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec-cCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-EKG 84 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~-~~~ 84 (174)
.+++...++|+|||+|||+++++.....+.++....++||||||+|||+|+.++||++.+.. ..+|.+..+... ...
T Consensus 37 ~~~l~~~~~~~iIlsgGPg~~~d~~~~~~li~~~~~~~PiLGIClG~Qlla~alGG~V~~~~--~~~G~~~~i~~~~~~~ 114 (208)
T PRK05637 37 VEEILAANPDLICLSPGPGHPRDAGNMMALIDRTLGQIPLLGICLGFQALLEHHGGKVEPCG--PVHGTTDNMILTDAGV 114 (208)
T ss_pred HHHHHhcCCCEEEEeCCCCCHHHhhHHHHHHHHHhCCCCEEEEcHHHHHHHHHcCCeeccCC--cccceEEEeEECCCCC
Confidence 46777778999999999999988766555554444589999999999999999999998754 356666544433 233
Q ss_pred CCCcccCCC------------CceeecccccceecccCCCCCCcEEEEEcCC--C-ceEEEeeCCCCceEEEecCCCCcC
Q 030626 85 EDGLLAGLS------------NPFTAGRYHSLVIEKESFPSDALEVTAWTED--G-LIMAARHKKYKHLQGVQFHPESII 149 (174)
Q Consensus 85 ~~~l~~~~~------------~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~--~-~i~a~~~~~~~~~~g~QfHPE~~~ 149 (174)
.+++|.+++ .++.++++|++.+.. +|++++++|++++ + .+++++..+.+ +||+|||||...
T Consensus 115 ~~~l~~~~~~~~~~~~~~~~g~~~~V~~~H~~~v~~---lp~~~~vlA~s~~~~~~v~~a~~~~~~~-~~GvQfHPE~~~ 190 (208)
T PRK05637 115 QSPVFAGLATDVEPDHPEIPGRKVPIARYHSLGCVV---APDGMESLGTCSSEIGPVIMAAETTDGK-AIGLQFHPESVL 190 (208)
T ss_pred CCcccCCCCcccccccccccCCceEEEEechhhhhc---CCCCeEEEEEecCCCCCEEEEEEECCCC-EEEEEeCCccCc
Confidence 567888775 357899999999986 7799999999765 3 46777887765 999999999999
Q ss_pred CCchHHHHHHHHHHHH
Q 030626 150 TTEGKTIVRNFIKMIV 165 (174)
Q Consensus 150 ~~~~~~l~~~f~~~~~ 165 (174)
++.|..||+||++.+.
T Consensus 191 T~~G~~il~nfl~~~~ 206 (208)
T PRK05637 191 SPTGPIILSRCVEQLL 206 (208)
T ss_pred CCCHHHHHHHHHHHHh
Confidence 9999999999998764
No 11
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=4.4e-35 Score=216.60 Aligned_cols=151 Identities=43% Similarity=0.791 Sum_probs=124.5
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCC
Q 030626 7 VSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED 86 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~ 86 (174)
+++.+.++|+||++|||+++++.....+.++.+..++|+||||+|||+|+.++||++.+.+. .++|....+... .+
T Consensus 37 ~~~~~~~~~~iilsgGp~~~~~~~~~~~~i~~~~~~~PiLGIClG~Qlia~a~Gg~v~~~~~-~~~G~~~~~~~~---~~ 112 (193)
T PRK08857 37 DGIEALNPTHLVISPGPCTPNEAGISLQAIEHFAGKLPILGVCLGHQAIAQVFGGQVVRARQ-VMHGKTSPIRHT---GR 112 (193)
T ss_pred HHHhhCCCCEEEEeCCCCChHHCcchHHHHHHhcCCCCEEEEcHHHHHHHHHhCCEEEeCCC-ceeCceEEEEEC---CC
Confidence 44556789999999999999887766666666778999999999999999999999999874 346664444332 56
Q ss_pred CcccCCCCceeecccccceecccCCCCCCcEEEEEcC--C---CceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626 87 GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE--D---GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 161 (174)
Q Consensus 87 ~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~--~---~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 161 (174)
++|.+++..+.++++|++.+...+ ++++++++|+++ + +.|+++++++.| +||+|||||+..++.|.+||+||+
T Consensus 113 ~l~~~~~~~~~v~~~H~~~v~~~~-lp~~~~v~a~s~~~~~~~~~i~~~~~~~~p-i~gvQfHPE~~~t~~g~~i~~nFl 190 (193)
T PRK08857 113 SVFKGLNNPLTVTRYHSLVVKNDT-LPECFELTAWTELEDGSMDEIMGFQHKTLP-IEAVQFHPESIKTEQGHQLLANFL 190 (193)
T ss_pred cccccCCCccEEEEccEEEEEcCC-CCCCeEEEEEecCcCCCcceEEEEEeCCCC-EEEEeeCCCcCCCcchHHHHHHHH
Confidence 799999888999999999986333 468999999886 4 358899999876 999999999988889999999998
Q ss_pred HH
Q 030626 162 KM 163 (174)
Q Consensus 162 ~~ 163 (174)
+.
T Consensus 191 ~~ 192 (193)
T PRK08857 191 AR 192 (193)
T ss_pred hh
Confidence 73
No 12
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=100.00 E-value=1.2e-34 Score=212.82 Aligned_cols=142 Identities=56% Similarity=0.957 Sum_probs=119.2
Q ss_pred cCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcccC
Q 030626 12 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 91 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (174)
.++||||++||++++.+.......+..+.+++|+||||+|||+|+.++||++.+.+.. .++.+.++... .+++|.+
T Consensus 41 ~~~dgvil~gG~~~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~~~Gg~v~~~~~~-~~g~~~~v~~~---~~~~~~~ 116 (184)
T cd01743 41 LNPDAIVISPGPGHPEDAGISLEIIRALAGKVPILGVCLGHQAIAEAFGGKVVRAPEP-MHGKTSEIHHD---GSGLFKG 116 (184)
T ss_pred cCCCEEEECCCCCCcccchhHHHHHHHHhcCCCEEEECHhHHHHHHHhCCEEEeCCCC-CcCceeEEEEC---CCccccC
Confidence 4799999999999987765443333345678999999999999999999999988743 45665555443 5678999
Q ss_pred CCCceeecccccceecccCCCCCC--cEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626 92 LSNPFTAGRYHSLVIEKESFPSDA--LEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 161 (174)
Q Consensus 92 ~~~~~~~~~~H~~~v~~~~l~~~~--~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 161 (174)
+++.+.++++|++.++. ++.+ ++++|.++++.++|++.++++ +||+|||||+.+++.|.+||+||+
T Consensus 117 ~~~~~~~~~~H~~~v~~---~~~~~~~~~la~~~~~~v~a~~~~~~~-i~gvQfHPE~~~~~~g~~l~~~f~ 184 (184)
T cd01743 117 LPQPFTVGRYHSLVVDP---DPLPDLLEVTASTEDGVIMALRHRDLP-IYGVQFHPESILTEYGLRLLENFL 184 (184)
T ss_pred CCCCcEEEeCcEEEEec---CCCCceEEEEEeCCCCeEEEEEeCCCC-EEEEeeCCCcCCCcchHHHHHhhC
Confidence 99899999999999986 4455 999999999999999998876 999999999988999999999995
No 13
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=100.00 E-value=1.5e-34 Score=212.99 Aligned_cols=151 Identities=26% Similarity=0.444 Sum_probs=122.5
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 84 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~ 84 (174)
.+++...++|||||+||+++.++... ...++. ...++|+||||+|||+|+.++||++.+.+. .+.| +..+... .
T Consensus 34 ~~~~~~~~~~glii~Gg~~~~~~~~~-~~~i~~~~~~~~PilGIC~G~Qll~~~lgg~v~~~~~-~~~g-~~~v~~~--~ 108 (188)
T TIGR00888 34 LEEIREKNPKGIILSGGPSSVYAENA-PRADEKIFELGVPVLGICYGMQLMAKQLGGEVGRAEK-REYG-KAELEIL--D 108 (188)
T ss_pred HHHHhhcCCCEEEECCCCCCcCcCCc-hHHHHHHHhCCCCEEEECHHHHHHHHhcCceEecCCC-ccce-eEEEEEe--c
Confidence 45666667789999999999887543 233333 567899999999999999999999998763 3344 3333333 3
Q ss_pred CCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHH
Q 030626 85 EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMI 164 (174)
Q Consensus 85 ~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~ 164 (174)
.+++|.++++.+.++++|++.+.. ++++++++|+++++.+++++.++++ +||+|||||+..+++|.+||+||++.+
T Consensus 109 ~~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~vla~~~~~~v~a~~~~~~~-~~g~QfHPE~~~~~~g~~i~~~f~~~~ 184 (188)
T TIGR00888 109 EDDLFRGLPDESTVWMSHGDKVKE---LPEGFKVLATSDNCPVAAMAHEEKP-IYGVQFHPEVTHTEYGNELLENFVYDV 184 (188)
T ss_pred CCHhhcCCCCCcEEEeEccceeec---CCCCCEEEEECCCCCeEEEEECCCC-EEEEeeCCccCCChhhHHHHHHHHHHh
Confidence 458999998889999999999976 6789999999999999999998766 999999999987778999999999854
Q ss_pred H
Q 030626 165 V 165 (174)
Q Consensus 165 ~ 165 (174)
+
T Consensus 185 ~ 185 (188)
T TIGR00888 185 C 185 (188)
T ss_pred h
Confidence 3
No 14
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=100.00 E-value=1.5e-34 Score=216.61 Aligned_cols=147 Identities=48% Similarity=0.805 Sum_probs=121.6
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcccC
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLLAG 91 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 91 (174)
++|||||+|||+++.+.....+.+++ .+.++|+||||+|||+|+.++||++.+.+.. .+|....+... .+.+|.+
T Consensus 46 ~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~G~Qlla~a~GG~v~~~~~~-~~g~~~~v~~~---~~~~~~~ 121 (214)
T PRK07765 46 QFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCLGHQAIGVAFGATVDRAPEL-LHGKTSSVHHT---GVGVLAG 121 (214)
T ss_pred CCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEccCHHHHHHHhCCEEeeCCCC-ccCceeEEEEC---CCccccC
Confidence 69999999999998766555556655 5678999999999999999999999987643 34554444443 3458888
Q ss_pred CCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626 92 LSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 165 (174)
Q Consensus 92 ~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 165 (174)
++..+.++++|++.+.+++ ++++++++|+++++.++|++.++.+ +||+|||||+..+..|.+++++|++.|.
T Consensus 122 ~~~~~~v~~~H~~~v~~~~-lp~~~~vla~s~~~~vqa~~~~~~~-i~gvQfHPE~~~t~~g~~~l~~f~~~~~ 193 (214)
T PRK07765 122 LPDPFTATRYHSLTILPET-LPAELEVTARTDSGVIMAVRHRELP-IHGVQFHPESVLTEGGHRMLANWLTVCG 193 (214)
T ss_pred CCCccEEEecchheEeccc-CCCceEEEEEcCCCcEEEEEeCCCC-EEEEeeCCCcccCcchHHHHHHHHHHhc
Confidence 8888999999999996433 4689999999999999999999876 9999999999778899999999998764
No 15
>KOG0026 consensus Anthranilate synthase, beta chain [Amino acid transport and metabolism]
Probab=100.00 E-value=3.3e-34 Score=199.93 Aligned_cols=164 Identities=84% Similarity=1.350 Sum_probs=152.6
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK 83 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~ 83 (174)
-.+++|.++|+++++|++|||.+.|.+-....++++...+|+||||+|.|.|.++|||++.+......||...++.++..
T Consensus 54 iTV~El~~~NP~~LliSPGPG~P~DsGIs~~~i~~f~~~iP~fGvCMGlQCi~e~fGGkv~~a~~~i~HGK~S~i~~D~~ 133 (223)
T KOG0026|consen 54 LTVEELKRKNPRGLLISPGPGTPQDSGISLQTVLELGPLVPLFGVCMGLQCIGEAFGGKIVRSPFGVMHGKSSMVHYDEK 133 (223)
T ss_pred ccHHHHhhcCCCeEEecCCCCCCccccchHHHHHHhCCCCceeeeehhhhhhhhhhCcEEeccCcceeeccccccccCCc
Confidence 35789999999999999999999999988899999999999999999999999999999999886677999988888877
Q ss_pred CCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626 84 GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163 (174)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 163 (174)
....+|+++++.+.+--+|+.....++|+.+.++++|+.+++.|++.+++.|.++-|+|||||...+++|+.+++||++.
T Consensus 134 ~~~G~f~g~~q~~~V~RYHSLa~~~sSlP~d~L~VTawTEnG~iMgaRHkKY~~ieGVQfHPESIlteeGk~~irNflni 213 (223)
T KOG0026|consen 134 GEEGLFSGLSNPFIVGRYHSLVIEKDSFPSDELEVTAWTEDGLVMAARHRKYKHIQGVQFHPESIITTEGKTIVRNFIKI 213 (223)
T ss_pred cccccccCCCCCeEEEeeeeeeeecccCCccceeeeEeccCcEEEeeeccccccccceeecchhhhhhhhHHHHHHHHHh
Confidence 77899999999999999999999988888899999999999999999999998899999999999999999999999998
Q ss_pred HHHH
Q 030626 164 IVRK 167 (174)
Q Consensus 164 ~~~~ 167 (174)
.++.
T Consensus 214 ~~~t 217 (223)
T KOG0026|consen 214 VEKK 217 (223)
T ss_pred cccc
Confidence 7653
No 16
>PRK00758 GMP synthase subunit A; Validated
Probab=100.00 E-value=2e-33 Score=206.40 Aligned_cols=148 Identities=28% Similarity=0.434 Sum_probs=115.5
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
.+++.+.. |||||+||+ +..+.....+.++ ..++|+||||+|||+|+.++||++.+.+. ..+|... +... ..
T Consensus 35 ~~~l~~~~-dgivi~Gg~-~~~~~~~~~~~l~--~~~~PilGIC~G~Q~L~~a~Gg~v~~~~~-~~~g~~~-i~~~--~~ 106 (184)
T PRK00758 35 VEEIKAFE-DGLILSGGP-DIERAGNCPEYLK--ELDVPILGICLGHQLIAKAFGGEVGRGEY-GEYALVE-VEIL--DE 106 (184)
T ss_pred HHHHhhcC-CEEEECCCC-ChhhccccHHHHH--hCCCCEEEEeHHHHHHHHhcCcEEecCCC-ceeeeEE-EEEc--CC
Confidence 34554433 999999998 3322222333333 35799999999999999999999998763 3344432 2222 35
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 165 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 165 (174)
+++|.++++.+.++++|++.+.. ++++++++|+++++.++|++.++++ ++|+|||||+..+++|.+||++|++.+.
T Consensus 107 ~~l~~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~~~~v~a~~~~~~~-~~g~QfHPE~~~~~~g~~l~~~f~~~~~ 182 (184)
T PRK00758 107 DDILKGLPPEIRVWASHADEVKE---LPDGFEILARSDICEVEAMKHKEKP-IYGVQFHPEVAHTEYGEEIFKNFLEICG 182 (184)
T ss_pred ChhhhCCCCCcEEEeehhhhhhh---CCCCCEEEEECCCCCEEEEEECCCC-EEEEEcCCccCCCchHHHHHHHHHHHHc
Confidence 67899998899999999999976 6789999999999999999998765 9999999999877899999999997653
No 17
>cd01742 GATase1_GMP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in GMP synthetase. GMP synthetase is a glutamine amidotransferase from the de novo purine biosynthetic pathway. Glutamine amidotransferase (GATase) activity catalyse the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. GMP synthetase catalyses the amination of the nucleotide precursor xanthosine 5'-monophospahte to form GMP. GMP synthetase belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=100.00 E-value=3e-33 Score=204.88 Aligned_cols=140 Identities=31% Similarity=0.535 Sum_probs=115.0
Q ss_pred cCCCEEEeCCCCCCCCCcc--hhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcc
Q 030626 12 KNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL 89 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~~--~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (174)
.++|||||+||++++++.. .+.+.+. ..++|+||||+|||+|+.++||++.+... .+.|... +.. ...+++|
T Consensus 40 ~~~dgvIl~Gg~~~~~~~~~~~~~~~~~--~~~~PilGIC~G~Qll~~~~gg~v~~~~~-~~~G~~~-v~~--~~~~~l~ 113 (181)
T cd01742 40 KNPKGIILSGGPSSVYEEDAPRVDPEIF--ELGVPVLGICYGMQLIAKALGGKVERGDK-REYGKAE-IEI--DDSSPLF 113 (181)
T ss_pred cCCCEEEECCCcccccccccchhhHHHH--hcCCCEEEEcHHHHHHHHhcCCeEEeCCC-CcceEEE-EEe--cCCChhh
Confidence 4799999999999887653 2223333 34799999999999999999999998763 3344433 322 2467899
Q ss_pred cCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626 90 AGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 161 (174)
Q Consensus 90 ~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 161 (174)
.+++..+.++++|++.+.. ++++++++|+++++.+++++.++++ +||+|||||+..+++|.+||+||+
T Consensus 114 ~~~~~~~~~~~~H~~~v~~---l~~~~~~la~~~~~~i~a~~~~~~~-~~g~QfHPE~~~~~~g~~ll~~f~ 181 (181)
T cd01742 114 EGLPDEQTVWMSHGDEVVK---LPEGFKVIASSDNCPVAAIANEEKK-IYGVQFHPEVTHTEKGKEILKNFL 181 (181)
T ss_pred cCCCCceEEEcchhhhhhh---cCCCcEEEEeCCCCCEEEEEeCCCc-EEEEEcCCccccCcChHHHHHhhC
Confidence 9998889999999999976 6789999999999999999998765 999999999987789999999984
No 18
>COG0518 GuaA GMP synthase - Glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.8e-34 Score=208.80 Aligned_cols=149 Identities=32% Similarity=0.441 Sum_probs=122.4
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCcchhH----HHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec
Q 030626 7 VSYCRKNPRGVLISPGPGAPQDSGISL----QTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD 81 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~~~~~~----~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~ 81 (174)
+++...++|||||+|||.|+++...+. ..|++ ...++||||||+|||+||.++||+|.+... .+.|.. ++...
T Consensus 39 ~~~~~~~~~giIlsGgp~sv~~~~~w~~~~~~~i~~~~~p~~pvLGIC~G~Ql~A~~lGg~V~~~~~-~E~G~~-~v~~~ 116 (198)
T COG0518 39 EELPLDSPDGIIISGGPMSVYDEDPWLPREKDLIKDAGVPGKPVLGICLGHQLLAKALGGKVERGPK-REIGWT-PVELT 116 (198)
T ss_pred ccccccCCCEEEEcCCCCCCccccccchhHHHHHHHhCCCCCCEEEEChhHHHHHHHhCCEEeccCC-CccceE-EEEEe
Confidence 455556789999999999999887443 44554 456778999999999999999999999874 455554 44444
Q ss_pred cCCCCCcccCCCCce-eecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHH
Q 030626 82 EKGEDGLLAGLSNPF-TAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNF 160 (174)
Q Consensus 82 ~~~~~~l~~~~~~~~-~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f 160 (174)
. ..+++|++++... .++++|++.+.. +|++++++|.|+.+.+++++.. . ++||+|||||.+. +.+..+++||
T Consensus 117 ~-~~~~l~~gl~~~~~~v~~sH~D~v~~---lP~g~~vlA~s~~cp~qa~~~~-~-~~~gvQFHpEv~~-~~~~~~l~nf 189 (198)
T COG0518 117 E-GDDPLFAGLPDLFTTVFMSHGDTVVE---LPEGAVVLASSETCPNQAFRYG-K-RAYGVQFHPEVTH-EYGEALLENF 189 (198)
T ss_pred c-CccccccCCccccCccccchhCcccc---CCCCCEEEecCCCChhhheecC-C-cEEEEeeeeEEeH-HHHHHHHHHh
Confidence 3 3458999998887 599999999987 7899999999999999999998 3 5999999999964 7899999999
Q ss_pred HHHH
Q 030626 161 IKMI 164 (174)
Q Consensus 161 ~~~~ 164 (174)
...+
T Consensus 190 ~~~i 193 (198)
T COG0518 190 AHEI 193 (198)
T ss_pred hhhh
Confidence 9643
No 19
>PLN02347 GMP synthetase
Probab=100.00 E-value=8.9e-33 Score=229.74 Aligned_cols=155 Identities=24% Similarity=0.382 Sum_probs=125.9
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHH--cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLE--LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD 81 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~--~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~ 81 (174)
.+++...++|||||+|||+++++.+. +...+.+ ...++|+||||+|||+|+.++||+|.+.. ..++|... +..
T Consensus 46 ~~~i~~~~~dgIILsGGP~sv~~~~~p~~~~~i~~~~~~~~iPILGIClG~QlLa~alGG~V~~~~-~~e~G~~~-v~i- 122 (536)
T PLN02347 46 LDRIASLNPRVVILSGGPHSVHVEGAPTVPEGFFDYCRERGVPVLGICYGMQLIVQKLGGEVKPGE-KQEYGRME-IRV- 122 (536)
T ss_pred HHHHhcCCCCEEEECCCCCcccccCCchhhHHHHHHHHhcCCcEEEECHHHHHHHHHcCCEEEecC-CcccceEE-EEE-
Confidence 56777678999999999999986542 2233332 24579999999999999999999999876 34566554 333
Q ss_pred cCCCCCcccCCCCc--eeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHH
Q 030626 82 EKGEDGLLAGLSNP--FTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRN 159 (174)
Q Consensus 82 ~~~~~~l~~~~~~~--~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~ 159 (174)
..++++|++++.. ..++++|++.+.. +|++++++|+++++.++++++.+.+ +||+|||||+..++.|..|++|
T Consensus 123 -~~~~~Lf~~l~~~~~~~v~~~Hsd~V~~---lP~g~~vlA~s~~~~iaai~~~~~~-i~GvQFHPE~~~t~~G~~iL~N 197 (536)
T PLN02347 123 -VCGSQLFGDLPSGETQTVWMSHGDEAVK---LPEGFEVVAKSVQGAVVAIENRERR-IYGLQYHPEVTHSPKGMETLRH 197 (536)
T ss_pred -cCCChhhhcCCCCceEEEEEEEEEEeee---CCCCCEEEEEeCCCcEEEEEECCCC-EEEEEccCCCCccchHHHHHHH
Confidence 2467899999876 7899999999976 6789999999999999999998766 9999999999888999999999
Q ss_pred HHHHHHHHH
Q 030626 160 FIKMIVRKE 168 (174)
Q Consensus 160 f~~~~~~~~ 168 (174)
|+..+++..
T Consensus 198 Fl~~ic~~~ 206 (536)
T PLN02347 198 FLFDVCGVT 206 (536)
T ss_pred HHHHHhCcC
Confidence 997666533
No 20
>PF00117 GATase: Glutamine amidotransferase class-I; InterPro: IPR017926 Glutamine amidotransferase (GATase) enzymes catalyse the removal of the ammonia group from glutamine and then transfer this group to a substrate to form a new carbon-nitrogen group []. The GATase domain exists either as a separate polypeptidic subunit or as part of a larger polypeptide fused in different ways to a synthase domain. Two classes of GATase domains have been identified [, ]: class-I (also known as trpG-type or triad) and class-II (also known as purF-type or Ntn). Class-I (or type 1) GATase domains have been found in the following enzymes: The second component of anthranilate synthase (AS) []. AS catalyzes the biosynthesis of anthranilate from chorismate and glutamine. AS is generally a dimeric enzyme: the first component can synthesize anthranilate using ammonia rather than glutamine, whereas component II provides the GATase activity []. In some bacteria and in fungi the GATase component of AS is part of a multifunctional protein that also catalyzes other steps of the biosynthesis of tryptophan. The second component of 4-amino-4-deoxychorismate (ADC) synthase, a dimeric prokaryotic enzyme that functions in the pathway that catalyzes the biosynthesis of para-aminobenzoate (PABA) from chorismate and glutamine. The second component (gene pabA) provides the GATase activity []. CTP synthase. CTP synthase catalyzes the final reaction in the biosynthesis of pyrimidine, the ATP-dependent formation of CTP from UTP and glutamine. CTP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the C-terminal section []. GMP synthase (glutamine-hydrolyzing). GMP synthase catalyzes the ATP-dependent formation of GMP from xanthosine 5'-phosphate and glutamine. GMP synthase is a single chain enzyme that contains two distinct domains; the GATase domain is in the N-terminal section [, ]. Glutamine-dependent carbamoyl-phosphate synthase (GD-CPSase); an enzyme involved in both arginine and pyrimidine biosynthesis and which catalyzes the ATP-dependent formation of carbamoyl phosphate from glutamine and carbon dioxide. In bacteria GD-CPSase is composed of two subunits: the large chain (gene carB) provides the CPSase activity, while the small chain (gene carA) provides the GATase activity. In yeast the enzyme involved in arginine biosynthesis is also composed of two subunits: CPA1 (GATase), and CPA2 (CPSase). In most eukaryotes, the first three steps of pyrimidine biosynthesis are catalyzed by a large multifunctional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals). The GATase domain is located at the N-terminal extremity of this polyprotein []. Phosphoribosylformylglycinamidine synthase, an enzyme that catalyzes the fourth step in the de novo biosynthesis of purines. In some species of bacteria and rchaea, FGAM synthase II is composed of two subunits: a small chain (gene purQ) which provides the GATase activity and a large chain (gene purL) which provides the aminator activity. In eukaryotes and Gram-negative bacteria a single polypeptide (large type of purL) contains a FGAM synthethase domain and the GATase as the C-terminal domain []. Imidazole glycerol phosphate synthase subunit hisH, an enzyme that catalyzes the fifth step in the biosynthesis of histidine. A triad of conserved Cys-His-Glu forms the active site, wherein the catalytic cysteine is essential for the amidotransferase activity [, ]. Different structures show that the active site Cys of type 1 GATase is located at the tip of a nucleophile elbow.; PDB: 1I7S_D 1I7Q_D 3UOW_B 1GPM_C 1O1Y_A 2VXO_A 2VPI_B 1OX5_B 1OX6_B 1OX4_B ....
Probab=100.00 E-value=1.6e-33 Score=208.01 Aligned_cols=150 Identities=35% Similarity=0.593 Sum_probs=121.4
Q ss_pred hcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcc
Q 030626 11 RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL 89 (174)
Q Consensus 11 ~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (174)
..++|||||+||++++++.....+.++. ...++|+||||+|||+|+.++|+++.+.+....++....+.... .+++|
T Consensus 40 ~~~~d~iii~Gg~~~~~d~~~~~~~i~~~~~~~~PilGIC~G~Q~la~~~G~~v~~~~~~~~~g~~~~~~~~~--~~~~~ 117 (192)
T PF00117_consen 40 LDDYDGIIISGGPGSPYDIEGLIELIREARERKIPILGICLGHQILAHALGGKVVPSPEKPHHGGNIPISETP--EDPLF 117 (192)
T ss_dssp TTTSSEEEEECESSSTTSHHHHHHHHHHHHHTTSEEEEETHHHHHHHHHTTHEEEEEESEEEEEEEEEEEEEE--EHGGG
T ss_pred hcCCCEEEECCcCCccccccccccccccccccceEEEEEeehhhhhHHhcCCccccccccccccccccccccc--ccccc
Confidence 4579999999999999985444455554 45789999999999999999999999876333344444433321 26889
Q ss_pred cCCCCceeecccccceecccCCCCCCcEEEEEcCCC-ceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626 90 AGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163 (174)
Q Consensus 90 ~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 163 (174)
.++++.+.++++|++.+.+..+++++++++|+++++ .++++.+.++| ++|+|||||+..+..+..+++||+-.
T Consensus 118 ~~~~~~~~~~~~H~~~v~~~~~~p~~~~~la~s~~~~~~~~~~~~~~~-i~g~QfHPE~~~~~~~~~~l~nf~~~ 191 (192)
T PF00117_consen 118 YGLPESFKAYQYHSDAVNPDDLLPEGFEVLASSSDGCPIQAIRHKDNP-IYGVQFHPEFSSSPGGPQLLKNFFLK 191 (192)
T ss_dssp TTSTSEEEEEEEECEEEEEGHHHHTTEEEEEEETTTTEEEEEEECTTS-EEEESSBTTSTTSTTHHHHHHHHHHH
T ss_pred cccccccccccccceeeecccccccccccccccccccccccccccccE-EEEEecCCcCCCCCCcchhhhheeEe
Confidence 999999999999999998533346899999999765 89999999876 99999999999888999999999865
No 21
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=8.8e-33 Score=229.92 Aligned_cols=152 Identities=34% Similarity=0.640 Sum_probs=126.2
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
.+++...++|+|||+|||+++++.+.....+..+..++||||||+|||+|+.++||+|.+.. ...+|....+.. ..
T Consensus 41 ~~~l~~~~~~~IIlSpGPg~p~d~~~~~~i~~~~~~~iPILGIClG~QlLa~a~GG~V~~~~-~~~~G~~~~i~~---~~ 116 (531)
T PRK09522 41 IERLATMSNPVLMLSPGPGVPSEAGCMPELLTRLRGKLPIIGICLGHQAIVEAYGGYVGQAG-EILHGKASSIEH---DG 116 (531)
T ss_pred HHHHHhcCcCEEEEcCCCCChhhCCCCHHHHHHHhcCCCEEEEcHHHHHHHHhcCCEEEeCC-ceeeeeEEEEee---cC
Confidence 56676778999999999999988765544444466789999999999999999999999875 234555443332 34
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 165 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 165 (174)
+++|.+++..+.++.+|++.+.. +|++++++|+ .++.++++++.+.+ +||+|||||+..++.|..|++||++.+.
T Consensus 117 ~~lf~~~~~~~~v~~~Hs~~v~~---lP~~l~vlA~-sd~~v~ai~~~~~~-i~GVQFHPEs~~T~~G~~il~NFl~~~~ 191 (531)
T PRK09522 117 QAMFAGLTNPLPVARYHSLVGSN---IPAGLTINAH-FNGMVMAVRHDADR-VCGFQFHPESILTTQGARLLEQTLAWAQ 191 (531)
T ss_pred CccccCCCCCcEEEEehheeccc---CCCCcEEEEe-cCCCEEEEEECCCC-EEEEEecCccccCcchHHHHHHHHHHHh
Confidence 57899998889999999999976 6799999997 57789999998765 9999999999999999999999998875
Q ss_pred H
Q 030626 166 R 166 (174)
Q Consensus 166 ~ 166 (174)
.
T Consensus 192 ~ 192 (531)
T PRK09522 192 Q 192 (531)
T ss_pred h
Confidence 3
No 22
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.2e-32 Score=228.59 Aligned_cols=154 Identities=48% Similarity=0.830 Sum_probs=130.1
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
.+++...++|+|||+|||+++++.+...+.++.+..++|+||||+|||+|+.++||++.+... ..+|....+... .
T Consensus 37 ~~~~~~~~~d~vIlsgGP~~p~~~~~~~~li~~~~~~~PvLGIClG~QlLa~a~Gg~V~~~~~-~~~G~~~~v~~~---~ 112 (534)
T PRK14607 37 IEEIEALNPSHIVISPGPGRPEEAGISVEVIRHFSGKVPILGVCLGHQAIGYAFGGKIVHAKR-ILHGKTSPIDHN---G 112 (534)
T ss_pred HHHHHhcCCCEEEECCCCCChhhCCccHHHHHHhhcCCCEEEEcHHHHHHHHHcCCeEecCCc-cccCCceeEEEC---C
Confidence 456666789999999999999887766666666667899999999999999999999999874 346666555433 5
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 165 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 165 (174)
+++|.+++..+.++++|++.+.... ++.+++++|+++++.|++++++++| +||+|||||+..+++|.+||+||++.+.
T Consensus 113 ~~lf~~~~~~~~v~~~Hs~~v~~~~-lp~~~~vlA~s~d~~i~a~~~~~~p-i~GvQFHPE~~~t~~g~~i~~nFl~~~~ 190 (534)
T PRK14607 113 KGLFRGIPNPTVATRYHSLVVEEAS-LPECLEVTAKSDDGEIMGIRHKEHP-IFGVQFHPESILTEEGKRILKNFLNYQR 190 (534)
T ss_pred CcchhcCCCCcEEeeccchheeccc-CCCCeEEEEEcCCCCEEEEEECCCC-EEEEEeCCCCCCChhHHHHHHHHHHHhh
Confidence 5789999888899999999986433 4689999999999999999999877 9999999999878899999999999764
No 23
>PRK11366 puuD gamma-glutamyl-gamma-aminobutyrate hydrolase; Provisional
Probab=100.00 E-value=8.4e-32 Score=206.41 Aligned_cols=151 Identities=28% Similarity=0.369 Sum_probs=112.3
Q ss_pred CCCEEEeCCCCCCCCC--------cc---h-----hHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCC----ccc
Q 030626 13 NPRGVLISPGPGAPQD--------SG---I-----SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPL----GVM 71 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~--------~~---~-----~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~----~~~ 71 (174)
.+||||++||+.++.. .. . .++.++. +..++||||||+|||+|+.++||++.+... ...
T Consensus 61 ~~DGlil~GG~~dv~P~~yg~~~~~~~~~~~rD~~e~~li~~a~~~~~PILGICrG~Qllnva~GGtl~~~~~~~~~~~~ 140 (254)
T PRK11366 61 KLDGIYLPGSPSNVQPHLYGENGDEPDADPGRDLLSMALINAALERRIPIFAICRGLQELVVATGGSLHRKLCEQPELLE 140 (254)
T ss_pred hCCEEEeCCCCCCcCHhhcCCCCCCCCCChhHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHhCCeEeecccccccccc
Confidence 4899999999876521 11 1 1234443 678899999999999999999999998621 111
Q ss_pred ccc------------cceeEeccCCCCCcccCC-C--CceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCC
Q 030626 72 HGK------------SSLVYYDEKGEDGLLAGL-S--NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYK 136 (174)
Q Consensus 72 ~~~------------~~~~~~~~~~~~~l~~~~-~--~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~ 136 (174)
|+. ...+.+. +++++..+ + +.+.++++|++.|.. ++++++++|+++|+.|+|++..+++
T Consensus 141 h~~~~~~~~~~~~~~~h~v~~~---~~s~l~~i~~~~~~~~Vns~H~q~V~~---l~~gl~v~A~s~dg~ieAie~~~~~ 214 (254)
T PRK11366 141 HREDPELPVEQQYAPSHEVQVE---EGGLLSALLPECSNFWVNSLHGQGAKV---VSPRLRVEARSPDGLVEAVSVINHP 214 (254)
T ss_pred cccCCccccccccCCceEEEEC---CCCcHHHhcCCCceEEeehHHHHHHhh---cccceEEEEEcCCCcEEEEEeCCCC
Confidence 211 1222222 33444443 2 467899999999987 7899999999999999999999877
Q ss_pred ceEEEecCCCCcCCCch--HHHHHHHHHHHHHHHH
Q 030626 137 HLQGVQFHPESIITTEG--KTIVRNFIKMIVRKEA 169 (174)
Q Consensus 137 ~~~g~QfHPE~~~~~~~--~~l~~~f~~~~~~~~~ 169 (174)
+++|+|||||+..++++ .+||++|++.+.+...
T Consensus 215 ~~~GVQwHPE~~~~~~~~~~~lf~~fv~~~~~~~~ 249 (254)
T PRK11366 215 FALGVQWHPEWNSSEYALSRILFEGFITACQHHIA 249 (254)
T ss_pred CEEEEEeCCCcCCCCCchHHHHHHHHHHHHHHHHH
Confidence 67999999999877666 7899999998876554
No 24
>PRK00074 guaA GMP synthase; Reviewed
Probab=99.98 E-value=4.7e-32 Score=225.44 Aligned_cols=151 Identities=28% Similarity=0.476 Sum_probs=124.0
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK 83 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~ 83 (174)
.+++...++|||||+||+.++++... ..+.+ ...++|+||||+|||+|+.++||++.+.. ..+.|... +...
T Consensus 39 ~~~l~~~~~dgIIlsGGp~sv~~~~~p~~~~~i--~~~~~PvLGIC~G~QlLa~~lGG~V~~~~-~~e~G~~~-i~i~-- 112 (511)
T PRK00074 39 AEEIRAFNPKGIILSGGPASVYEEGAPRADPEI--FELGVPVLGICYGMQLMAHQLGGKVERAG-KREYGRAE-LEVD-- 112 (511)
T ss_pred HHHHhccCCCEEEECCCCcccccCCCccccHHH--HhCCCCEEEECHHHHHHHHHhCCeEEecC-CcccceEE-EEEc--
Confidence 46777778899999999999887543 22333 34579999999999999999999999886 34455433 3332
Q ss_pred CCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626 84 GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163 (174)
Q Consensus 84 ~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 163 (174)
.++++|.+++..+.++++|++.+.. ++++++++|+++++.++++++.+.+ +||+|||||++.++.|..||+||+..
T Consensus 113 ~~~~Lf~~l~~~~~v~~~H~d~V~~---lp~g~~vlA~s~~~~v~ai~~~~~~-i~GvQFHPE~~~t~~G~~il~nFl~~ 188 (511)
T PRK00074 113 NDSPLFKGLPEEQDVWMSHGDKVTE---LPEGFKVIASTENCPIAAIANEERK-FYGVQFHPEVTHTPQGKKLLENFVFD 188 (511)
T ss_pred CCChhhhcCCCceEEEEECCeEEEe---cCCCcEEEEEeCCCCEEEEEeCCCC-EEEEeCCCCcCCchhHHHHHHHHHHH
Confidence 3567999998889999999999976 6799999999999999999987766 99999999999888999999999965
Q ss_pred HHH
Q 030626 164 IVR 166 (174)
Q Consensus 164 ~~~ 166 (174)
+++
T Consensus 189 i~~ 191 (511)
T PRK00074 189 ICG 191 (511)
T ss_pred hcC
Confidence 543
No 25
>TIGR01368 CPSaseIIsmall carbamoyl-phosphate synthase, small subunit. This model represents the whole of the small chain of the glutamine-dependent form (EC 6.3.5.5) of carbamoyl phosphate synthase, CPSase II. The C-terminal domain has glutamine amidotransferase activity. Note that the sequence from the mammalian urea cycle form has lost the active site Cys, resulting in an ammonia-dependent form, CPSase I (EC 6.3.4.16). CPSases of pyrimidine biosynthesis, arginine biosynthesis, and the urea cycle may be encoded by one or by several genes, depending on the species.
Probab=99.98 E-value=1.5e-31 Score=212.57 Aligned_cols=149 Identities=29% Similarity=0.516 Sum_probs=117.5
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
.+++...++|||||+|||+++.+....++.+++...++|+||||+|||+|+.++||++.+.+.+ .+|...++.... .
T Consensus 207 ~~~i~~~~pDGIiLSgGPgdp~~~~~~i~~i~~~~~~~PILGIClG~QlLa~a~Gg~v~kl~~g-h~G~nhpV~~~~--~ 283 (358)
T TIGR01368 207 AEEIKKYNPDGIFLSNGPGDPAAVEPAIETIRKLLEKIPIFGICLGHQLLALAFGAKTYKMKFG-HRGGNHPVKDLI--T 283 (358)
T ss_pred HHHHHhhCCCEEEECCCCCCHHHHHHHHHHHHHHHcCCCEEEECHHHHHHHHHhCCceeccCcC-cCCCceeeEECC--C
Confidence 4566667789999999999987665556666653338999999999999999999999998754 355555544321 0
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHHHH
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKM 163 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~ 163 (174)
...+.+.++|+++|++++++.+++++++++ +|+.|++++++++| ++|+|||||+..++ +...||++|++.
T Consensus 284 -------~~v~itsqnH~~aV~~~~l~~~~l~vta~~~nDg~Vegi~h~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~ 355 (358)
T TIGR01368 284 -------GRVEITSQNHGYAVDPDSLPAGDLEVTHVNLNDGTVEGIRHKDLP-VFSVQYHPEASPGPHDTEYLFDEFIDL 355 (358)
T ss_pred -------CcEEEeecCCCcEEcccccCCCceEEEEEECCCCcEEEEEECCCC-EEEEEECCCCCCCCCChHHHHHHHHHH
Confidence 123456778999998766655789999997 68999999999987 99999999998776 567899999987
Q ss_pred HH
Q 030626 164 IV 165 (174)
Q Consensus 164 ~~ 165 (174)
+.
T Consensus 356 ~~ 357 (358)
T TIGR01368 356 IK 357 (358)
T ss_pred hh
Confidence 74
No 26
>PRK09065 glutamine amidotransferase; Provisional
Probab=99.98 E-value=1.6e-31 Score=203.07 Aligned_cols=140 Identities=27% Similarity=0.374 Sum_probs=113.0
Q ss_pred CCCEEEeCCCCCCCCCcchhH----HHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCC
Q 030626 13 NPRGVLISPGPGAPQDSGISL----QTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG 87 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~----~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~ 87 (174)
++|||||+||+.+.++...++ +.+++ ...++|+||||+|||+|+.++||+|.+.+.+.+.|......+.....++
T Consensus 54 ~~dgvvi~Gg~~~~~d~~~w~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~g~e~G~~~v~~~~~~~~~~ 133 (237)
T PRK09065 54 DFAGVIITGSWAMVTDRLDWSERTADWLRQAAAAGMPLLGICYGHQLLAHALGGEVGYNPAGRESGTVTVELHPAAADDP 133 (237)
T ss_pred hcCEEEEeCCCcccCCCchhHHHHHHHHHHHHHCCCCEEEEChhHHHHHHHcCCccccCCCCCccceEEEEEccccccCh
Confidence 689999999999988876654 33443 5578999999999999999999999988755556654444444444678
Q ss_pred cccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626 88 LLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162 (174)
Q Consensus 88 l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 162 (174)
+|+++++.+.++++|++.+.. +|++++++|+++++.+++++.++ ++||+|||||++ ..+++.|++
T Consensus 134 l~~~~~~~~~v~~~H~d~v~~---lp~~~~~la~s~~~~iqa~~~~~--~i~gvQfHPE~~-----~~~~~~~~~ 198 (237)
T PRK09065 134 LFAGLPAQFPAHLTHLQSVLR---LPPGAVVLARSAQDPHQAFRYGP--HAWGVQFHPEFT-----AHIMRAYLR 198 (237)
T ss_pred hhhcCCccCcEeeehhhhhhh---CCCCCEEEEcCCCCCeeEEEeCC--CEEEEEeCCcCC-----HHHHHHHHH
Confidence 999999999999999999876 67999999999999999999875 499999999974 445555544
No 27
>COG0505 CarA Carbamoylphosphate synthase small subunit [Amino acid transport and metabolism / Nucleotide transport and metabolism]
Probab=99.97 E-value=1.7e-31 Score=207.06 Aligned_cols=151 Identities=26% Similarity=0.520 Sum_probs=127.0
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 84 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~ 84 (174)
.+++.++++|||+||.|||+|......+..+++ ++..+|++|||+|||+|+.|+|++..+++.+. +|.+.+++....
T Consensus 213 ~eeIl~~~pDGiflSNGPGDP~~~~~~i~~ik~l~~~~iPifGICLGHQllalA~Ga~T~KmkFGH-rG~NhPV~dl~t- 290 (368)
T COG0505 213 AEEILALNPDGIFLSNGPGDPAPLDYAIETIKELLGTKIPIFGICLGHQLLALALGAKTYKMKFGH-RGANHPVKDLDT- 290 (368)
T ss_pred HHHHHhhCCCEEEEeCCCCChhHHHHHHHHHHHHhccCCCeEEEcHHHHHHHHhcCCceeecccCC-CCCCcCcccccC-
Confidence 578889999999999999999888888888888 56667999999999999999999999999664 676666543211
Q ss_pred CCCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHHH
Q 030626 85 EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIK 162 (174)
Q Consensus 85 ~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~ 162 (174)
.......++|+|+|+++++.... +++..+ .|+.+++++++++| ++++|||||..+++ |...||..|++
T Consensus 291 --------grv~ITSQNHGyaVd~~s~~~~~-~vth~nlnDgTvEGi~h~~~P-~fSVQ~HPEAsPGPhDt~ylFd~Fi~ 360 (368)
T COG0505 291 --------GRVYITSQNHGYAVDEDSLVETL-KVTHVNLNDGTVEGIRHKDLP-AFSVQYHPEASPGPHDTRYLFDEFIE 360 (368)
T ss_pred --------CeEEEEecCCceecChhhcCCCc-eeEEEeCCCCCccceecCCCc-eEEEccCCCCCCCCcccHHHHHHHHH
Confidence 23467889999999987665444 788877 78999999999988 99999999998887 67899999999
Q ss_pred HHHHHH
Q 030626 163 MIVRKE 168 (174)
Q Consensus 163 ~~~~~~ 168 (174)
.+++.+
T Consensus 361 ~~~~~~ 366 (368)
T COG0505 361 LMEAAK 366 (368)
T ss_pred HHHHhh
Confidence 998765
No 28
>PRK12838 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.97 E-value=3.8e-31 Score=210.02 Aligned_cols=150 Identities=29% Similarity=0.530 Sum_probs=118.6
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
.+++.+.++|||||+|||+++.+....++.+++....+|+||||+|||+|+.++||++.+.+.+ .+|...++.....
T Consensus 201 ~~~i~~~~~DGIiLsgGPgdp~~~~~~~~~i~~~~~~~PvlGIClG~QlLa~a~Gg~v~kl~~g-h~G~~hpV~~~~~-- 277 (354)
T PRK12838 201 LEEIKNLNPDGIVLSNGPGDPKELQPYLPEIKKLISSYPILGICLGHQLIALALGADTEKLPFG-HRGANHPVIDLTT-- 277 (354)
T ss_pred HHHHhhcCCCEEEEcCCCCChHHhHHHHHHHHHHhcCCCEEEECHHHHHHHHHhCCEEecCCCC-ccCCceEEEECCC--
Confidence 4566667899999999999987776666777663334999999999999999999999988754 3566655544311
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHHHH
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKM 163 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~ 163 (174)
. ..+.+.++|++.+.++++...++++++.+ +|+.|+|++++++| +||+|||||+..++ ++..||++|++.
T Consensus 278 ~-------~~~~ts~~H~~aV~~~sl~~~~l~v~a~~~~Dg~Veai~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~~ 349 (354)
T PRK12838 278 G-------RVWMTSQNHGYVVDEDSLDGTPLSVRFFNVNDGSIEGLRHKKKP-VLSVQFHPEAHPGPHDAEYIFDEFLEM 349 (354)
T ss_pred C-------eEEEeccchheEecccccCCCCcEEEEEECCCCeEEEEEECCCC-EEEEEeCCCCCCCCccHHHHHHHHHHH
Confidence 1 23456789999998766554568999975 68999999999987 99999999997766 678999999998
Q ss_pred HHH
Q 030626 164 IVR 166 (174)
Q Consensus 164 ~~~ 166 (174)
+.+
T Consensus 350 ~~~ 352 (354)
T PRK12838 350 MEK 352 (354)
T ss_pred HHh
Confidence 864
No 29
>cd01744 GATase1_CPSase Small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. This group of sequences represents the small chain of the glutamine-dependent form of carbamoyl phosphate synthase, CPSase II. CPSase II catalyzes the production of carbomyl phosphate (CP) from bicarbonate, glutamine and two molecules of MgATP. The reaction is believed to proceed by a series of four biochemical reactions involving a minimum of three discrete highly reactive intermediates. The synthesis of CP is critical for the initiation of two separate biosynthetic pathways. In one CP is coupled to aspartate, its carbon and nitrogen nuclei ultimately incorporated into the aromatic moieties of pyrimidine nucleotides. In the second pathway CP is condensed with ornithine at the start of the urea cycle and is utilized for the detoxification of ammonia and biosynthesis of arginine. CPSases may be encoded by one or by several genes, depending on the species. The E.coli enzyme is
Probab=99.97 E-value=1e-30 Score=190.96 Aligned_cols=143 Identities=29% Similarity=0.529 Sum_probs=108.5
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 7 VSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
+++...++|||||+||++++.+.....+.+++ ...++|+||||+|+|+|+.++||++.+.+.+ .++...++.... .
T Consensus 33 ~~~~~~~~dgiil~GG~~~~~~~~~~~~~~~~~~~~~~PvlGIC~G~Q~l~~~~Gg~v~~~~~~-~~g~~~~v~~~~--~ 109 (178)
T cd01744 33 EEILKLDPDGIFLSNGPGDPALLDEAIKTVRKLLGKKIPIFGICLGHQLLALALGAKTYKMKFG-HRGSNHPVKDLI--T 109 (178)
T ss_pred HHHhhcCCCEEEECCCCCChhHhHHHHHHHHHHHhCCCCEEEECHHHHHHHHHcCCceecCCCC-CCCCceeeEEcC--C
Confidence 34444579999999999988765555555554 5667999999999999999999999886532 244443333221 0
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHH
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFI 161 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~ 161 (174)
...+.+.++|++.+++++ ++++++++|++ +++.++++++++.+ +||+|||||+..++ +..+||++|+
T Consensus 110 -------~~~~~v~~~H~~~v~~~~-lp~~~~v~a~s~~~~~i~a~~~~~~~-i~GvQfHPE~~~~~~~~~~lf~~f~ 178 (178)
T cd01744 110 -------GRVYITSQNHGYAVDPDS-LPGGLEVTHVNLNDGTVEGIRHKDLP-VFSVQFHPEASPGPHDTEYLFDEFL 178 (178)
T ss_pred -------CCcEEEEcCceEEEcccc-cCCceEEEEEECCCCcEEEEEECCCC-eEEEeeCCCCCCCCCCchHhHhhhC
Confidence 124567889999997544 45799999997 58899999998877 99999999997664 5678999985
No 30
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=99.97 E-value=9.9e-31 Score=223.30 Aligned_cols=150 Identities=43% Similarity=0.730 Sum_probs=123.0
Q ss_pred hcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCcc
Q 030626 11 RKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGLL 89 (174)
Q Consensus 11 ~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l~ 89 (174)
..++|+|||+||||++.+... .+.+.+ +..++|+||||+|||+|+.++||++.+.+. ..+|.+..+... ..+++|
T Consensus 557 ~~~~DgLILsgGPGsp~d~~~-~~~I~~~~~~~iPvLGICLG~QlLa~a~GG~V~~~~~-p~~G~~~~V~~~--~~~~Lf 632 (717)
T TIGR01815 557 ERRPDLVVLSPGPGRPADFDV-AGTIDAALARGLPVFGVCLGLQGMVEAFGGALDVLPE-PVHGKASRIRVL--GPDALF 632 (717)
T ss_pred hcCCCEEEEcCCCCCchhccc-HHHHHHHHHCCCCEEEECHHHHHHhhhhCCEEEECCC-CeeCcceEEEEC--CCChhh
Confidence 357999999999999987543 344443 567899999999999999999999999874 357766666543 356899
Q ss_pred cCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCC---chHHHHHHHHHHHHH
Q 030626 90 AGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT---EGKTIVRNFIKMIVR 166 (174)
Q Consensus 90 ~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~---~~~~l~~~f~~~~~~ 166 (174)
.+++..+.++++|++.+.... ++++++++|+++++.++|+++...+ +||+|||||+..+. .|.+||+||+..+..
T Consensus 633 ~~lp~~~~v~~~HS~~~~~~~-LP~~~~vlA~s~d~~v~Ai~~~~~~-i~GVQFHPEsi~T~sg~~G~~ilkNfl~~~~~ 710 (717)
T TIGR01815 633 AGLPERLTVGRYHSLFARRDR-LPAELTVTAESADGLIMAIEHRRLP-LAAVQFHPESIMTLDGGAGLAMIGNVVDRLAA 710 (717)
T ss_pred hcCCCCCEEEEECCCCccccc-CCCCeEEEEEeCCCcEEEEEECCCC-EEEEEeCCeeCCccCchhHHHHHHHHHHHHhh
Confidence 999999999999999875433 4689999999999999999998876 99999999996553 579999999998863
No 31
>PRK12564 carbamoyl phosphate synthase small subunit; Reviewed
Probab=99.97 E-value=1e-30 Score=208.10 Aligned_cols=146 Identities=28% Similarity=0.512 Sum_probs=114.8
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 84 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~ 84 (174)
.+++...++|||||+|||+++.+....++.+++ ...++|+||||+|||+|+.++||++.+.+.+. +|...++.....
T Consensus 211 ~~~i~~~~~DGIvLSgGPgdp~~~~~~~~~i~~~~~~~~PilGIClG~QlLa~a~Gg~v~kl~~gh-~G~~~pv~~~~~- 288 (360)
T PRK12564 211 AEEILALNPDGVFLSNGPGDPAALDYAIEMIRELLEKKIPIFGICLGHQLLALALGAKTYKMKFGH-RGANHPVKDLET- 288 (360)
T ss_pred HHHHHhcCCCEEEEeCCCCChHHHHHHHHHHHHHHHcCCeEEEECHHHHHHHHHhCCcEeccCCCc-cCCceeeEECCC-
Confidence 456666689999999999998765544555554 44679999999999999999999999987442 455444443210
Q ss_pred CCCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHHH
Q 030626 85 EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIK 162 (174)
Q Consensus 85 ~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~ 162 (174)
...+.+.++|+++|+++++ ++++++++.+ +|+.|++++++++| +||+|||||+..++ ++..||++|++
T Consensus 289 --------~~~~its~~H~~~V~~~~l-p~~l~v~a~~~~Dg~iegi~~~~~p-i~gVQfHPE~~~gp~d~~~lF~~F~~ 358 (360)
T PRK12564 289 --------GKVEITSQNHGFAVDEDSL-PANLEVTHVNLNDGTVEGLRHKDLP-AFSVQYHPEASPGPHDSAYLFDEFVE 358 (360)
T ss_pred --------CcEEEEecCcccEEccccc-CCceEEEEEeCCCCcEEEEEECCCC-EEEEEeCCcCCCCCCCHHHHHHHHHH
Confidence 1235678899999976555 5789999998 68999999999987 99999999998776 57889999997
Q ss_pred H
Q 030626 163 M 163 (174)
Q Consensus 163 ~ 163 (174)
.
T Consensus 359 ~ 359 (360)
T PRK12564 359 L 359 (360)
T ss_pred h
Confidence 5
No 32
>PRK13566 anthranilate synthase; Provisional
Probab=99.97 E-value=1.3e-30 Score=222.92 Aligned_cols=151 Identities=47% Similarity=0.764 Sum_probs=123.9
Q ss_pred HHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCC
Q 030626 9 YCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG 87 (174)
Q Consensus 9 ~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~ 87 (174)
+...++|+|||+|||+++.+... ...+.. +..++||||||+|||+|+.++||++.+.+. ..+|.+..+... ..++
T Consensus 565 ~~~~~~DgVVLsgGpgsp~d~~~-~~lI~~a~~~~iPILGIClG~QlLa~alGG~V~~~~~-~~~G~~~~V~v~--~~~~ 640 (720)
T PRK13566 565 LDRVNPDLVVLSPGPGRPSDFDC-KATIDAALARNLPIFGVCLGLQAIVEAFGGELGQLAY-PMHGKPSRIRVR--GPGR 640 (720)
T ss_pred hhhcCCCEEEECCCCCChhhCCc-HHHHHHHHHCCCcEEEEehhHHHHHHHcCCEEEECCC-CccCCceEEEEC--CCCc
Confidence 44467999999999999876542 344443 567899999999999999999999999874 346766666554 3458
Q ss_pred cccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCC---CchHHHHHHHHHHH
Q 030626 88 LLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIIT---TEGKTIVRNFIKMI 164 (174)
Q Consensus 88 l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~---~~~~~l~~~f~~~~ 164 (174)
+|.+++..+.++++|++.+.... ++++++++|.++++.|+++++++++ +||+|||||+..+ +.|.+||+||++.+
T Consensus 641 Lf~~lp~~~~v~~~Hs~~v~~~~-Lp~~~~vlA~s~dg~V~ai~~~~~p-i~GVQFHPE~i~t~~~~~G~~ii~nfl~~~ 718 (720)
T PRK13566 641 LFSGLPEEFTVGRYHSLFADPET-LPDELLVTAETEDGVIMAIEHKTLP-VAAVQFHPESIMTLGGDVGLRIIENVVRLL 718 (720)
T ss_pred hhhcCCCCCEEEEecceeEeecc-CCCceEEEEEeCCCcEEEEEECCCC-EEEEeccCeeCCcCCchhHHHHHHHHHHHh
Confidence 99999989999999998876434 4589999999999999999999876 9999999999655 46999999999887
Q ss_pred H
Q 030626 165 V 165 (174)
Q Consensus 165 ~ 165 (174)
.
T Consensus 719 ~ 719 (720)
T PRK13566 719 A 719 (720)
T ss_pred h
Confidence 4
No 33
>PRK07567 glutamine amidotransferase; Provisional
Probab=99.97 E-value=3.2e-30 Score=196.40 Aligned_cols=131 Identities=25% Similarity=0.344 Sum_probs=105.0
Q ss_pred cCCCEEEeCCCCCCCCCc----chhHH----HH----HH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCccccccccee
Q 030626 12 KNPRGVLISPGPGAPQDS----GISLQ----TV----LE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV 78 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~----~~~~~----~i----~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~ 78 (174)
.++|||||+||++++++. ..++. .+ .. ...++|+||||+|||+|+.++||+|.+ ..+.+.|.....
T Consensus 50 ~~~dgvIi~Gg~~~~~d~~~~~~pw~~~~~~~i~~~i~~~~~~~~PvLGIC~G~Qlla~a~GG~V~~-~~g~e~G~~~v~ 128 (242)
T PRK07567 50 DDYSGVIVGGSPFNVSDPAESKSPWQRRVEAELSGLLDEVVARDFPFLGACYGVGTLGHHQGGVVDR-TYGEPVGAVTVS 128 (242)
T ss_pred hhccEEEEcCCCCcCCCCCCccchHHHHHHHHHHHHHHHHHhcCCCEEEEchhHHHHHHHcCCEEec-CCCCcCccEEEE
Confidence 358999999999999876 33332 12 11 368899999999999999999999998 434555544333
Q ss_pred EeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCc
Q 030626 79 YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 148 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~ 148 (174)
.......+++|.+++..+.++++|++.|.. +|++++++|+++++.+++++..+ ++||+|||||.+
T Consensus 129 l~~~g~~~~l~~~~~~~~~~~~~H~d~V~~---lp~~~~vlA~s~~~~vqa~~~~~--~~~gvQfHPE~~ 193 (242)
T PRK07567 129 LTDAGRADPLLAGLPDTFTAFVGHKEAVSA---LPPGAVLLATSPTCPVQMFRVGE--NVYATQFHPELD 193 (242)
T ss_pred ECCccCCChhhcCCCCceEEEeehhhhhhh---CCCCCEEEEeCCCCCEEEEEeCC--CEEEEEeCCcCC
Confidence 333344678999999999999999999976 78999999999999999999865 599999999984
No 34
>PRK05665 amidotransferase; Provisional
Probab=99.97 E-value=3.2e-30 Score=195.90 Aligned_cols=128 Identities=20% Similarity=0.176 Sum_probs=107.0
Q ss_pred CCCEEEeCCCCCCCCCcchhHHH----HHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCC
Q 030626 13 NPRGVLISPGPGAPQDSGISLQT----VLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG 87 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~----i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~ 87 (174)
++|||||+||+.++++...|+.. |++ ..+++|+||||+|||+|+.++||+|.+.+.+++.|.... ... ...+
T Consensus 57 ~~dgiiitGs~~~v~~~~pwi~~l~~~i~~~~~~~~PilGIC~GhQlla~AlGG~V~~~~~G~e~G~~~~-~~~--~~~~ 133 (240)
T PRK05665 57 KFDAYLVTGSKADSFGTDPWIQTLKTYLLKLYERGDKLLGVCFGHQLLALLLGGKAERASQGWGVGIHRY-QLA--AHAP 133 (240)
T ss_pred cCCEEEECCCCCCccccchHHHHHHHHHHHHHhcCCCEEEEeHHHHHHHHHhCCEEEeCCCCcccceEEE-Eec--CCCc
Confidence 59999999999999988777543 333 467899999999999999999999999886665555432 222 3456
Q ss_pred cccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCc
Q 030626 88 LLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 148 (174)
Q Consensus 88 l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~ 148 (174)
++..++..+.++++|++.|.. +|++++++|+|+.+.+++++..+ ++||+|||||++
T Consensus 134 ~~~~~~~~~~~~~~H~D~V~~---LP~ga~~La~s~~~~~q~~~~~~--~~~g~QfHPE~~ 189 (240)
T PRK05665 134 WMSPAVTELTLLISHQDQVTA---LPEGATVIASSDFCPFAAYHIGD--QVLCFQGHPEFV 189 (240)
T ss_pred cccCCCCceEEEEEcCCeeee---CCCCcEEEEeCCCCcEEEEEeCC--CEEEEecCCcCc
Confidence 888888899999999999987 78999999999999999998765 599999999985
No 35
>COG2071 Predicted glutamine amidotransferases [General function prediction only]
Probab=99.97 E-value=3.5e-30 Score=190.94 Aligned_cols=149 Identities=26% Similarity=0.419 Sum_probs=112.1
Q ss_pred CCCEEEeCCCCCCCCC--cc---------------h-hHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcc---
Q 030626 13 NPRGVLISPGPGAPQD--SG---------------I-SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV--- 70 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~--~~---------------~-~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~--- 70 (174)
..||||++|| .++.. ++ . -+..|++ +.+++||||||+|+|+|+.+|||++.+.-...
T Consensus 60 ~iDgliltGg-~nV~P~~YGee~~~~~~~~~p~RD~~E~aLi~~ALe~~iPILgICRG~QllNVa~GGtL~q~i~~~~~~ 138 (243)
T COG2071 60 LIDGLILTGG-SNVDPSLYGEEPSEKDGPYDPERDAFELALIRAALERGIPILGICRGLQLLNVALGGTLYQDISEQPGH 138 (243)
T ss_pred hccEEEecCC-CcCCHHHcCCCCCcccCCCCccccHHHHHHHHHHHHcCCCEEEEccchHHHHHHhcCeeehhhhccccc
Confidence 4799999999 44421 10 0 1355554 78999999999999999999999998865311
Q ss_pred -cccc-------cceeEeccCCCCCcccCCCCc-eeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEE
Q 030626 71 -MHGK-------SSLVYYDEKGEDGLLAGLSNP-FTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGV 141 (174)
Q Consensus 71 -~~~~-------~~~~~~~~~~~~~l~~~~~~~-~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~ 141 (174)
.|.. ...+.+. ..+.|.+-+.+. +.++++|++++++ +.++++++|.++|+.|+|++.++..+++|+
T Consensus 139 ~~H~~~~~~~~~~H~V~i~--~~s~La~i~g~~~~~VNS~HhQaIk~---La~~L~V~A~a~DG~VEAie~~~~~fvlGV 213 (243)
T COG2071 139 IDHRQPNPVHIESHEVHIE--PGSKLAKILGESEFMVNSFHHQAIKK---LAPGLVVEARAPDGTVEAVEVKNDAFVLGV 213 (243)
T ss_pred ccccCCCCcccceeEEEec--CCccHHHhcCccceeecchHHHHHHH---hCCCcEEEEECCCCcEEEEEecCCceEEEE
Confidence 1111 1112221 233444444544 8999999999998 889999999999999999999976789999
Q ss_pred ecCCCCcCCCc--hHHHHHHHHHHHHHH
Q 030626 142 QFHPESIITTE--GKTIVRNFIKMIVRK 167 (174)
Q Consensus 142 QfHPE~~~~~~--~~~l~~~f~~~~~~~ 167 (174)
|||||+....+ .+.||+.|.+.+..+
T Consensus 214 QWHPE~~~~~~~~~~~LFe~F~~~~~~~ 241 (243)
T COG2071 214 QWHPEYLVDTNPLSLALFEAFVNACKKH 241 (243)
T ss_pred ecChhhhccCChHHHHHHHHHHHHHHhh
Confidence 99999976654 578999999988765
No 36
>CHL00197 carA carbamoyl-phosphate synthase arginine-specific small subunit; Provisional
Probab=99.97 E-value=6.3e-30 Score=204.36 Aligned_cols=150 Identities=25% Similarity=0.464 Sum_probs=115.9
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 84 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~ 84 (174)
.+++..+++|||||+|||+++.+...+++.+.+ +..++|+||||+|||+|+.++||++.+.+.+. .+...++.
T Consensus 226 ~~~i~~~~~dgIilSgGPg~p~~~~~~i~~i~~~~~~~~PilGIClGhQlLa~a~Gg~v~k~~~Gh-~g~n~pv~----- 299 (382)
T CHL00197 226 YQDILSYQPDGILLSNGPGDPSAIHYGIKTVKKLLKYNIPIFGICMGHQILSLALEAKTFKLKFGH-RGLNHPSG----- 299 (382)
T ss_pred HHHHhccCCCEEEEcCCCCChhHHHHHHHHHHHHHhCCCCEEEEcHHHHHHHHHhCCEEeccCCCC-CCCCEecC-----
Confidence 456777789999999999999877666666655 34689999999999999999999999987442 23222221
Q ss_pred CCCcccCCCCc-eeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCCc-hHHHHHHHH
Q 030626 85 EDGLLAGLSNP-FTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITTE-GKTIVRNFI 161 (174)
Q Consensus 85 ~~~l~~~~~~~-~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~-~~~l~~~f~ 161 (174)
+... ....++|++.+.++++...++.+++.+ +|+.+++++++++| +||+|||||+..++. ...||++|+
T Consensus 300 -------~~~~v~itsq~H~~~v~~~sv~~~~~~vt~~~~nDgtvegi~h~~~p-i~gVQFHPE~~~gp~d~~~lf~~Fv 371 (382)
T CHL00197 300 -------LNQQVEITSQNHGFAVNLESLAKNKFYITHFNLNDGTVAGISHSPKP-YFSVQYHPEASPGPHDADYLFEYFI 371 (382)
T ss_pred -------CCCceEEeecchheEeeccccCCCCcEEEEEECCCCCEEEEEECCCC-cEEEeeCCCCCCCCCCHHHHHHHHH
Confidence 1122 334578999998766654578898875 68999999999987 999999999987765 457999999
Q ss_pred HHHHHHHH
Q 030626 162 KMIVRKEA 169 (174)
Q Consensus 162 ~~~~~~~~ 169 (174)
+.+.+.+.
T Consensus 372 ~~~~~~~~ 379 (382)
T CHL00197 372 EIIKHSKS 379 (382)
T ss_pred HHHHhhhc
Confidence 98876543
No 37
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=99.97 E-value=1.4e-29 Score=219.01 Aligned_cols=149 Identities=38% Similarity=0.657 Sum_probs=124.5
Q ss_pred cCCCEEEeCCCCCCCCCc---chhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCCc
Q 030626 12 KNPRGVLISPGPGAPQDS---GISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDGL 88 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~---~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~l 88 (174)
.++|+|||+||||++... +...+.+.+. .++||||||+|||+|+.++||+|.+.+. ..||....+.+. .+.+
T Consensus 130 ~~~d~IVlSPGPG~P~~~~d~Gi~~~~i~~~-~~iPILGICLGhQ~i~~~~Gg~V~~~~~-~~HG~~s~I~h~---~~~l 204 (918)
T PLN02889 130 KAFDNIVISPGPGSPTCPADIGICLRLLLEC-RDIPILGVCLGHQALGYVHGARIVHAPE-PVHGRLSEIEHN---GCRL 204 (918)
T ss_pred cCCCEEEECCCCCCccchHHHHHHHHHHHHh-CCCcEEEEcHHHHHHHHhcCceEEeCCC-ceeeeeeeEeec---Cchh
Confidence 478999999999998644 3335555554 4699999999999999999999999884 568887766553 4679
Q ss_pred ccCCCC----ceeecccccceecccCCCCCCcEEEEEcCC----------------------------------------
Q 030626 89 LAGLSN----PFTAGRYHSLVIEKESFPSDALEVTAWTED---------------------------------------- 124 (174)
Q Consensus 89 ~~~~~~----~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~---------------------------------------- 124 (174)
|.+++. .+.+..+|+..|+..+ +|+.++++|++.+
T Consensus 205 F~glp~~~~~~f~v~RYHSL~v~~~~-lP~~L~~~A~t~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 283 (918)
T PLN02889 205 FDDIPSGRNSGFKVVRYHSLVIDAES-LPKELVPIAWTSSSDTLSFLESQKSGLVPDAYESQIGQSGSSDPFSSKLKNGT 283 (918)
T ss_pred hcCCCcCCCCCceEEeCCCcccccCC-CCCceEEEEEECCCccccccccccccccccccccccccccccccccccccccc
Confidence 999986 5999999999997544 4588999998754
Q ss_pred -------------CceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHHHH
Q 030626 125 -------------GLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIVRK 167 (174)
Q Consensus 125 -------------~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~~~ 167 (174)
+.|+|++++..| +||+|||||...++.|..||+||++.+...
T Consensus 284 ~~~~~~~~~~~~~~viMairH~~~P-~~GVQfHPESi~t~~G~~l~~nF~~~~~~~ 338 (918)
T PLN02889 284 SWPSSHSERMQNGKILMGIMHSTRP-HYGLQFHPESIATCYGRQIFKNFREITQDY 338 (918)
T ss_pred ccccccccccCCCCeeEEEEECCCc-eEEEEeCCccccCchhHHHHHHHHHHHHHH
Confidence 579999999988 999999999999999999999999988754
No 38
>PLN02771 carbamoyl-phosphate synthase (glutamine-hydrolyzing)
Probab=99.96 E-value=2.6e-29 Score=201.48 Aligned_cols=135 Identities=30% Similarity=0.526 Sum_probs=108.9
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
.+++.++++|||||+||||++.+.....+.++++..++|+||||+|||+|+.++||++.+.+.+. +|...++.....
T Consensus 274 ~~ei~~~~pDGIiLSnGPGDP~~~~~~ie~ik~l~~~iPIlGICLGhQlLa~AlGGkv~K~~~Gh-~G~n~pV~~~~~-- 350 (415)
T PLN02771 274 ASEALKMKPDGVLFSNGPGDPSAVPYAVETVKELLGKVPVFGICMGHQLLGQALGGKTFKMKFGH-HGGNHPVRNNRT-- 350 (415)
T ss_pred HHHHhhcCCCEEEEcCCCCChhHhhHHHHHHHHHHhCCCEEEEcHHHHHHHHhcCCeEEECCCCc-ccceEEEEECCC--
Confidence 35677789999999999999987776666777654689999999999999999999999988653 666666543311
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCCc
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITTE 152 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~ 152 (174)
.....+.++|++.|+++++ +.++++++.+ +|+.+++++++++| ++|+|||||...++.
T Consensus 351 -------~~v~itsqnHg~aVd~~sL-p~~~~vt~~nlnDgtvegi~~~~~p-i~gVQFHPEa~pgp~ 409 (415)
T PLN02771 351 -------GRVEISAQNHNYAVDPASL-PEGVEVTHVNLNDGSCAGLAFPALN-VMSLQYHPEASPGPH 409 (415)
T ss_pred -------CCEEEEecCHHHhhccccC-CCceEEEEEeCCCCcEEEEEECCCC-EEEEEcCCCCCCCCC
Confidence 1123577899999976665 5789999987 78999999999987 999999999987764
No 39
>cd01741 GATase1_1 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.96 E-value=2e-29 Score=185.67 Aligned_cols=138 Identities=28% Similarity=0.443 Sum_probs=109.6
Q ss_pred cCCCEEEeCCCCCCC-CCcchh----HHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCC
Q 030626 12 KNPRGVLISPGPGAP-QDSGIS----LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGE 85 (174)
Q Consensus 12 ~~~dgiii~GG~~~~-~~~~~~----~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~ 85 (174)
.++|||||+||+.+. .+...+ .+.++. ..+++|+||||+|+|+|+.++||++.+.+.+...|............
T Consensus 45 ~~~dgvil~Gg~~~~~~~~~~~~~~~~~~i~~~~~~~~pilgiC~G~q~l~~~lGG~v~~~~~~~~~g~~~v~~~~~~~~ 124 (188)
T cd01741 45 DDYDGLVILGGPMSVDEDDYPWLKKLKELIRQALAAGKPVLGICLGHQLLARALGGKVGRNPKGWEIGWFPVTLTEAGKA 124 (188)
T ss_pred ccCCEEEECCCCccCCccCChHHHHHHHHHHHHHHCCCCEEEECccHHHHHHHhCCEEecCCCcceeEEEEEEecccccc
Confidence 368999999999988 444333 233443 56789999999999999999999999987553344433322333345
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHH
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFI 161 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~ 161 (174)
+++++++++.+.++++|++.+.. ++++++++|+++++.+++++.+. ++||+||||| ..+++||+
T Consensus 125 ~~l~~~~~~~~~v~~~H~~~v~~---lp~~~~~la~~~~~~v~~~~~~~--~~~g~QfHPE-------~~~~~~f~ 188 (188)
T cd01741 125 DPLFAGLPDEFPVFHWHGDTVVE---LPPGAVLLASSEACPNQAFRYGD--RALGLQFHPE-------ERLLRNFL 188 (188)
T ss_pred CchhhcCCCcceEEEEeccChhh---CCCCCEEeecCCCCCcceEEecC--CEEEEccCch-------HHHHhhhC
Confidence 67888888899999999999986 67899999999999999999873 5999999999 77888884
No 40
>PRK08250 glutamine amidotransferase; Provisional
Probab=99.96 E-value=6.3e-29 Score=188.60 Aligned_cols=138 Identities=24% Similarity=0.301 Sum_probs=109.5
Q ss_pred CCCEEEeCCCCCCCCC---cchh------HHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEecc
Q 030626 13 NPRGVLISPGPGAPQD---SGIS------LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDE 82 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~---~~~~------~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~ 82 (174)
++|+|||+||+.++.+ ...+ .+.+++ ...++|+||||+|+|+|+.++||+|.+.+. .+.|......+..
T Consensus 45 ~~d~vii~GGp~~~~~~~~~~p~~~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~~-~e~G~~~v~lt~~ 123 (235)
T PRK08250 45 GFDLLIVMGGPQSPRTTREECPYFDSKAEQRLINQAIKAGKAVIGVCLGAQLIGEALGAKYEHSPE-KEIGYFPITLTEA 123 (235)
T ss_pred ccCEEEECCCCCChhhccccccccchHHHHHHHHHHHHcCCCEEEEChhHHHHHHHhCceeccCCC-CceeEEEEEEccc
Confidence 6899999999998653 2222 234544 567899999999999999999999998874 5667665444555
Q ss_pred CCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626 83 KGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162 (174)
Q Consensus 83 ~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 162 (174)
...+++|.++++.+.+++||++.+. +|++++++|+|+.+.+++++..+ ++||+|||||.+ ..+++.+++
T Consensus 124 g~~d~l~~~~~~~~~v~~~H~d~~~----lP~~a~~LA~s~~~~~qa~~~~~--~~~g~QfHPE~~-----~~~~~~~~~ 192 (235)
T PRK08250 124 GLKDPLLSHFGSTLTVGHWHNDMPG----LTDQAKVLATSEGCPRQIVQYSN--LVYGFQCHMEFT-----VEAVELLIA 192 (235)
T ss_pred cccCchhhcCCCCcEEEEEecceec----CCCCCEEEECCCCCCceEEEeCC--CEEEEeecCcCC-----HHHHHHHHH
Confidence 5677899999999999999999764 67999999999999999999875 599999999974 334444444
No 41
>PRK06490 glutamine amidotransferase; Provisional
Probab=99.96 E-value=1.6e-28 Score=186.70 Aligned_cols=136 Identities=21% Similarity=0.292 Sum_probs=102.9
Q ss_pred CCCEEEeCCCCCCCCCcchhHH----HHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCC
Q 030626 13 NPRGVLISPGPGAPQDSGISLQ----TVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG 87 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~----~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~ 87 (174)
++||+||+||++++++...++. .|++ ...++|+||||+|||+|+.++||+|.+.+.+.....+..+.... ..+
T Consensus 52 ~~dgvii~Ggp~~~~d~~~wi~~~~~~i~~~~~~~~PvLGIC~G~Qlla~alGG~V~~~~~G~~e~G~~~i~~~~--~~~ 129 (239)
T PRK06490 52 DHAGAVIFGGPMSANDPDDFIRREIDWISVPLKENKPFLGICLGAQMLARHLGARVAPHPDGRVEIGYYPLRPTE--AGR 129 (239)
T ss_pred ccCEEEEECCCCCCCCCchHHHHHHHHHHHHHHCCCCEEEECHhHHHHHHHcCCEeecCCCCCCccceEEeEECC--Ccc
Confidence 6899999999999998876643 3343 56789999999999999999999999987554222333444332 223
Q ss_pred cccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626 88 LLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163 (174)
Q Consensus 88 l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 163 (174)
++..++ ..++++|++.+. +|++++++|+++++.+++++..+ ++||+|||||++ ..++++|+..
T Consensus 130 ~~~~~~--~~~~~~H~d~~~----lP~~~~~LA~s~~~~~qa~~~~~--~v~g~QfHPE~~-----~~~~~~~i~~ 192 (239)
T PRK06490 130 ALMHWP--EMVYHWHREGFD----LPAGAELLATGDDFPNQAFRYGD--NAWGLQFHPEVT-----RAMMHRWVVR 192 (239)
T ss_pred cccCCC--CEEEEECCcccc----CCCCCEEEEeCCCCCeEEEEeCC--CEEEEeeCccCC-----HHHHHHHHHh
Confidence 444443 357889999843 67899999999999999999875 599999999985 4566666553
No 42
>PRK07053 glutamine amidotransferase; Provisional
Probab=99.96 E-value=3e-28 Score=184.64 Aligned_cols=138 Identities=20% Similarity=0.283 Sum_probs=106.6
Q ss_pred cCCCEEEeCCCCCCCCCcc--hh----HHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626 12 KNPRGVLISPGPGAPQDSG--IS----LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 84 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~~--~~----~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~ 84 (174)
.++|+|||+||+.++++.. .+ .+.+++ ...++|+||||+|+|+|+.++||+|.+.. ..+.|...........
T Consensus 46 ~~~d~lii~Ggp~~~~d~~~~p~~~~~~~~i~~~~~~~~PvlGIC~G~Qlla~alGg~V~~~~-~~e~G~~~i~~t~~g~ 124 (234)
T PRK07053 46 LEPDLLVVLGGPIGVYDDELYPFLAPEIALLRQRLAAGLPTLGICLGAQLIARALGARVYPGG-QKEIGWAPLTLTDAGR 124 (234)
T ss_pred cCCCEEEECCCCCCCCCCCcCCcHHHHHHHHHHHHHCCCCEEEECccHHHHHHHcCCcEecCC-CCeEeEEEEEEecccc
Confidence 3689999999999988753 23 244443 56789999999999999999999999864 4556655444444444
Q ss_pred CCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626 85 EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162 (174)
Q Consensus 85 ~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 162 (174)
.+++ .+++..+.++++|++.++ +|++++++|+|+.+.+++++..+ ++||+|||||.+ ..+++.|+.
T Consensus 125 ~~pl-~~~~~~~~~~~~H~d~~~----lP~ga~~La~s~~~~~qaf~~g~--~~~g~QfHpE~~-----~~~~~~w~~ 190 (234)
T PRK07053 125 ASPL-RHLGAGTPVLHWHGDTFD----LPEGATLLASTPACRHQAFAWGN--HVLALQFHPEAR-----EDRFEAWLI 190 (234)
T ss_pred CChh-hcCCCcceEEEEeCCEEe----cCCCCEEEEcCCCCCeeEEEeCC--CEEEEeeCccCC-----HHHHHHHHH
Confidence 5565 467778889999999985 67999999999999999999854 599999999985 335555543
No 43
>PRK06186 hypothetical protein; Validated
Probab=99.95 E-value=3.3e-28 Score=181.82 Aligned_cols=154 Identities=19% Similarity=0.251 Sum_probs=107.8
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCC--ccccccc--ceeE---------
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPL--GVMHGKS--SLVY--------- 79 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~--~~~~~~~--~~~~--------- 79 (174)
++|||+++||.|.....++....-+++.+++|+||||+|||++...++.++..... ..+.... .++.
T Consensus 53 ~~dgilvpgGfg~rg~~Gki~ai~~Are~~iP~LGIClGmQ~avIe~arnv~g~~dA~s~E~~~~~~~pvi~~~~~~~~~ 132 (229)
T PRK06186 53 GFDGIWCVPGSPYRNDDGALTAIRFARENGIPFLGTCGGFQHALLEYARNVLGWADAAHAETDPEGDRPVIAPLSCSLVE 132 (229)
T ss_pred hCCeeEeCCCCCcccHhHHHHHHHHHHHcCCCeEeechhhHHHHHHHHhhhcCCcCCCcCCCCCCCCCCEEEECcccccc
Confidence 68999999999998888887666667889999999999999988887776644331 1111110 1111
Q ss_pred ---eccCCCCCcccCCC--Cceeecccccceeccc---CCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCC
Q 030626 80 ---YDEKGEDGLLAGLS--NPFTAGRYHSLVIEKE---SFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT 151 (174)
Q Consensus 80 ---~~~~~~~~l~~~~~--~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~ 151 (174)
.....+++++..+. +.+...+.|.|.|++. .+...|++++|+++|+.|++++.+++|+++|+|||||+.+.+
T Consensus 133 ~~h~v~l~~~S~l~~iyg~~~i~erhrHryeVNs~h~q~i~~~GL~vsa~s~DG~iEaiE~~~hpf~lGVQwHPE~~s~~ 212 (229)
T PRK06186 133 KTGDIRLRPGSLIARAYGTLEIEEGYHCRYGVNPEFVAALESGDLRVTGWDEDGDVRAVELPGHPFFVATLFQPERAALA 212 (229)
T ss_pred CceEEEECCCCHHHHHhCCCeeeeeccccEEECHHHHHHHhcCCeEEEEEcCCCCEEEEEeCCCCcEEEEeCCCCccCCC
Confidence 00011233333322 2244455566666531 234689999999999999999999999999999999997654
Q ss_pred -chHHHHHHHHHHHHH
Q 030626 152 -EGKTIVRNFIKMIVR 166 (174)
Q Consensus 152 -~~~~l~~~f~~~~~~ 166 (174)
...+||+.|++++.+
T Consensus 213 ~~~~~LF~~Fv~aa~~ 228 (229)
T PRK06186 213 GRPPPLVRAFLRAARA 228 (229)
T ss_pred CCCCHHHHHHHHHHhc
Confidence 456999999998753
No 44
>cd01745 GATase1_2 Subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. This group contains a subgroup of proteins having the Type 1 glutamine amidotransferase (GATase1) domain. GATase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. Glutamine amidotransferases (GATase) includes the triad family of amidotransferases which have a conserved Cys-His-Glu catalytic triad in the glutaminase active site. In this subgroup this triad is conserved. GATase activity can be found in a range of biosynthetic enzymes, including: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase , anthranilate synthase component II, glutamine-dependent carbamoyl phosphate synthase, cytidine triphosphate synthetase, gamma-glutamyl hydrolase, imidazole glycerol phosphate synthase and, cobyric acid synthase. Glutamine amidotransferase (GATase) domains can occur either as single polypeptides, as in glutamine
Probab=99.95 E-value=4.6e-28 Score=178.50 Aligned_cols=118 Identities=25% Similarity=0.454 Sum_probs=95.7
Q ss_pred cCCCEEEeCCCCCCCCC--------------cc--hh-HHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCccccc
Q 030626 12 KNPRGVLISPGPGAPQD--------------SG--IS-LQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHG 73 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~--------------~~--~~-~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~ 73 (174)
.++|||||+||++...+ .. .. .+.++. ...++|+||||+|+|+|+.++||++.+..
T Consensus 52 ~~~dglvl~GG~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~PilgiC~G~Q~l~~~~Gg~v~~~~------ 125 (189)
T cd01745 52 ELLDGLLLTGGGDVDPPLYGEEPHPELGPIDPERDAFELALLRAALERGKPILGICRGMQLLNVALGGTLYQDI------ 125 (189)
T ss_pred hhCCEEEECCCCCCChhhcCCCCCcccCCCChhHHHHHHHHHHHHHHCCCCEEEEcchHHHHHHHhCCeEEcCC------
Confidence 36899999999875321 00 01 233443 46789999999999999999999997643
Q ss_pred ccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCC--C
Q 030626 74 KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIIT--T 151 (174)
Q Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~--~ 151 (174)
.++++|++.|.. ++++++++|+++++.+++++.+++++++|+|||||+..+ +
T Consensus 126 -----------------------~v~~~H~~~v~~---~~~~~~vla~~~d~~vea~~~~~~~~~~gvQfHPE~~~~~~~ 179 (189)
T cd01745 126 -----------------------RVNSLHHQAIKR---LADGLRVEARAPDGVIEAIESPDRPFVLGVQWHPEWLADTDP 179 (189)
T ss_pred -----------------------ceechHHHHHhh---cCCCCEEEEECCCCcEEEEEeCCCCeEEEEecCCCcCcccCc
Confidence 467889999976 678999999999999999999874469999999999887 7
Q ss_pred chHHHHHHHH
Q 030626 152 EGKTIVRNFI 161 (174)
Q Consensus 152 ~~~~l~~~f~ 161 (174)
++.+||++|+
T Consensus 180 ~~~~if~~f~ 189 (189)
T cd01745 180 DSLKLFEAFV 189 (189)
T ss_pred hHhHHHHHhC
Confidence 8999999984
No 45
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=99.95 E-value=3.8e-27 Score=202.73 Aligned_cols=149 Identities=31% Similarity=0.513 Sum_probs=115.3
Q ss_pred cCCCEEEeCCCCCCCCCcch--hHHHHHHc--CCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCCC
Q 030626 12 KNPRGVLISPGPGAPQDSGI--SLQTVLEL--GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGEDG 87 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~~~--~~~~i~~~--~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~~ 87 (174)
.++|+|||+||||++.+... +.+.+.+. ..++||||||+|||+|+.++||++.+.+. ..||....+... ...
T Consensus 52 ~~~D~VVIspGPG~p~~~~~~~i~~~i~~~~~~~~iPvLGIClG~QlLa~a~GG~v~~~~~-~~hG~~~~v~~~---~~~ 127 (742)
T TIGR01823 52 PLFDAIVVGPGPGNPNNAQDMGIISELWELANLDEVPVLGICLGFQSLCLAQGADISRLPT-PKHGQVYEMHTN---DAA 127 (742)
T ss_pred cCCCEEEECCCCCCccchhhhHHHHHHHHhcccCCCcEEEEchhhHHHHhhcCCEEEECCC-CCcCeEEEEEEC---Ccc
Confidence 36899999999999975443 33444442 24799999999999999999999999873 457765545442 456
Q ss_pred cccCCCCceeecccccceecccCCCCCC--cEEEEEcCC-CceEEEeeCCCCceEEEecCCCCcCCCch-HHHHHHHHHH
Q 030626 88 LLAGLSNPFTAGRYHSLVIEKESFPSDA--LEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIITTEG-KTIVRNFIKM 163 (174)
Q Consensus 88 l~~~~~~~~~~~~~H~~~v~~~~l~~~~--~~~~a~s~~-~~i~a~~~~~~~~~~g~QfHPE~~~~~~~-~~l~~~f~~~ 163 (174)
+|.+++. +.++.+|++.+..+ .++. +.+++.+.+ +.++|+++.++| +||+|||||+..++.+ .+||+||++.
T Consensus 128 lf~gl~~-~~v~~~Hs~~v~~~--~~~~l~~~~~a~~~~~~~i~ai~h~~~p-i~GVQFHPE~~~s~~g~~~Lf~nFl~~ 203 (742)
T TIGR01823 128 IFCGLFS-VKSTRYHSLYANPE--GIDTLLPLCLTEDEEGIILMSAQTKKKP-WFGVQYHPESCCSELGSGKLVSNFLKL 203 (742)
T ss_pred ccCCCCC-CceeEEEEEEccCC--CCCcceEEEEEEcCCCCeEEEEEEcCCc-eEEEEeCcccCCCCccHHHHHHHHHHH
Confidence 8988875 88999999998652 2233 456666654 469999999987 9999999999877765 9999999999
Q ss_pred HHHHH
Q 030626 164 IVRKE 168 (174)
Q Consensus 164 ~~~~~ 168 (174)
+.+..
T Consensus 204 ~~~~~ 208 (742)
T TIGR01823 204 AFINN 208 (742)
T ss_pred HHHhh
Confidence 88654
No 46
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=99.95 E-value=3.3e-27 Score=170.91 Aligned_cols=142 Identities=27% Similarity=0.405 Sum_probs=106.5
Q ss_pred CCCEEEeCCCCCCCCCcch------hHHHHHH-cCCCCcEEeehHhHHHHHHH------------hCCeeccCCCc---c
Q 030626 13 NPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIGEA------------FGGKIVRSPLG---V 70 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~------~~~~i~~-~~~~~PilGIC~G~Qll~~~------------~gg~v~~~~~~---~ 70 (174)
..|+||+| |.|+..+..+ +++.+++ ...++|+||||+|||+|.+. +.|+|.+.+.. .
T Consensus 39 ~AD~liLP-GVGaf~~am~~L~~~gl~~~i~~~~~~~kP~LGIClGMQlLfe~SeE~~~~~GLg~i~G~V~r~~~~~~kv 117 (204)
T COG0118 39 KADKLILP-GVGAFGAAMANLRERGLIEAIKEAVESGKPFLGICLGMQLLFERSEEGGGVKGLGLIPGKVVRFPAEDLKV 117 (204)
T ss_pred hCCEEEec-CCCCHHHHHHHHHhcchHHHHHHHHhcCCCEEEEeHhHHhhhhcccccCCCCCcceecceEEEcCCCCCCC
Confidence 57899865 5666654433 3455554 55679999999999999863 44788777643 4
Q ss_pred cccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC-ceEEEeeCCCCceEEEecCCCCcC
Q 030626 71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESII 149 (174)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~g~QfHPE~~~ 149 (174)
+|..|+.+... ..++||+++++.-.+|+.|+|.+.+ .+.-.++++++.+ .+-|+..++ +++|+|||||+ |
T Consensus 118 PHMGWN~l~~~--~~~~l~~gi~~~~~~YFVHSY~~~~----~~~~~v~~~~~YG~~f~AaV~k~--N~~g~QFHPEK-S 188 (204)
T COG0118 118 PHMGWNQVEFV--RGHPLFKGIPDGAYFYFVHSYYVPP----GNPETVVATTDYGEPFPAAVAKD--NVFGTQFHPEK-S 188 (204)
T ss_pred Cccccceeecc--CCChhhcCCCCCCEEEEEEEEeecC----CCCceEEEeccCCCeeEEEEEeC--CEEEEecCccc-c
Confidence 68888887766 6889999998877899999999974 2344566766665 444444444 69999999999 7
Q ss_pred CCchHHHHHHHHHHH
Q 030626 150 TTEGKTIVRNFIKMI 164 (174)
Q Consensus 150 ~~~~~~l~~~f~~~~ 164 (174)
+..|.+|++||++.+
T Consensus 189 g~~Gl~lL~NFl~~~ 203 (204)
T COG0118 189 GKAGLKLLKNFLEWI 203 (204)
T ss_pred hHHHHHHHHHHHhhc
Confidence 889999999999864
No 47
>cd01746 GATase1_CTP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase. Type 1 glutamine amidotransferase (GATase1) domain found in Cytidine Triphosphate Synthetase (CTP). CTP is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. CTPs produce CTP from UTP and glutamine and regulate intracellular CTP levels through interactions with four ribonucleotide triphosphates. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. CTP is derived form UTP in three separate steps involving two active sites. In one active site, the UTP O4 oxygen is activated by Mg-ATP-dependent phosphorylation, followed by displacement of the resulting 4-phosphate moiety by ammonia. At a separate site, ammonia is generated via rate limiting glutamine hydrolysis (glutaminase) activity. A gated channel that spans between the glutamine hydrolysis and amidoligase active sites provides a path for ammonia diffusion. CTPs belong to th
Probab=99.95 E-value=2.6e-27 Score=179.33 Aligned_cols=148 Identities=18% Similarity=0.279 Sum_probs=104.7
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcc---c-ccccceeEec------
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGV---M-HGKSSLVYYD------ 81 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~---~-~~~~~~~~~~------ 81 (174)
++||||++||++.+...+. +..++. ...++|+||||+|||+|+.++|+++.+.+... . .+...++...
T Consensus 55 ~~dgivl~GG~~~~~~~~~-~~~i~~~~~~~~PvlGIClG~Q~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (235)
T cd01746 55 GADGILVPGGFGIRGVEGK-ILAIKYARENNIPFLGICLGMQLAVIEFARNVLGLPDANSTEFDPDTPHPVVDLMPEQKG 133 (235)
T ss_pred cCCEEEECCCCCCcchhhH-HHHHHHHHHCCceEEEEEhHHHHHHHHHHHHhcCCccCCccccCCCCCCCEEEECccccc
Confidence 5899999999988765543 233433 56789999999999999999999998765321 0 1111111100
Q ss_pred ---------------cCCCCCcccC-CC-Cceeecccccceeccc---CCCCCCcEEEEEcC-CCceEEEeeCCCCceEE
Q 030626 82 ---------------EKGEDGLLAG-LS-NPFTAGRYHSLVIEKE---SFPSDALEVTAWTE-DGLIMAARHKKYKHLQG 140 (174)
Q Consensus 82 ---------------~~~~~~l~~~-~~-~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~-~~~i~a~~~~~~~~~~g 140 (174)
...+++++.. ++ +...+.++|+++|+++ .++..+++++|++. |+.|++++.+++|+++|
T Consensus 134 ~~~~~~~~rl~~h~v~i~~~s~l~~~~g~~~~~~n~~H~~~v~~~~~~~~~~~~l~v~a~~~ddg~ieaie~~~~pf~lg 213 (235)
T cd01746 134 VKDLGGTMRLGAYPVILKPGTLAHKYYGKDEVEERHRHRYEVNPEYVDELEEAGLRFSGTDPDGGLVEIVELPDHPFFVG 213 (235)
T ss_pred ccccCcccccCceEEEECCCChHHHHhCCCEEEEecCcccccCHHHHHHHhhCCeEEEEEeCCCCeEEEEEcCCCCcEEE
Confidence 0012233333 23 2467899999998653 22468999999998 89999999999997779
Q ss_pred EecCCCCcCCC-chHHHHHHHH
Q 030626 141 VQFHPESIITT-EGKTIVRNFI 161 (174)
Q Consensus 141 ~QfHPE~~~~~-~~~~l~~~f~ 161 (174)
+|||||+.+.+ +..+||++|+
T Consensus 214 vQ~HPE~~~~~~~~~~lF~~fv 235 (235)
T cd01746 214 TQFHPEFKSRPLKPHPLFVGFV 235 (235)
T ss_pred EECCCCCcCCCCCccHHHHHhC
Confidence 99999997654 4578999885
No 48
>PRK13525 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.94 E-value=1.3e-26 Score=170.77 Aligned_cols=135 Identities=24% Similarity=0.397 Sum_probs=99.9
Q ss_pred CCCEEEeCCCCCCCCCcc----hhHHHHHH-cCCCCcEEeehHhHHHHHHHhCC-----------eeccCCCcccccccc
Q 030626 13 NPRGVLISPGPGAPQDSG----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGG-----------KIVRSPLGVMHGKSS 76 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~----~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg-----------~v~~~~~~~~~~~~~ 76 (174)
++|||||+||+.+..+.. .+.+.+++ ...++|+||||+|+|+|+.++|+ ++.+.+.+...+..
T Consensus 38 ~~dgiii~GG~~~~~~~~~~~~~~~~~i~~~~~~g~PilGIC~G~QlL~~~~gg~~~~~lg~~~~~v~~~~~g~~~g~~- 116 (189)
T PRK13525 38 EIDGLILPGGESTTMGKLLRDFGLLEPLREFIASGLPVFGTCAGMILLAKEIEGYEQEHLGLLDITVRRNAFGRQVDSF- 116 (189)
T ss_pred cCCEEEECCCChHHHHHHHHhccHHHHHHHHHHCCCeEEEECHHHHHHHhhcccCCCCceeeEEEEEEEccCCCceeeE-
Confidence 589999999987664321 12344554 56789999999999999999998 44444332222211
Q ss_pred eeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHH
Q 030626 77 LVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTI 156 (174)
Q Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l 156 (174)
..+.++.++++.+.++++|++.|.. +|++++++|++++ .+++++.. ++||+|||||+.. ..+|
T Consensus 117 -------~~~~~~~~~~~~~~~~~~H~d~v~~---lp~~~~vlA~~~~-~~~~~~~~---~~~g~QfHPE~~~---~~~~ 179 (189)
T PRK13525 117 -------EAELDIKGLGEPFPAVFIRAPYIEE---VGPGVEVLATVGG-RIVAVRQG---NILATSFHPELTD---DTRV 179 (189)
T ss_pred -------EecccccCCCCCeEEEEEeCceeec---cCCCcEEEEEcCC-EEEEEEeC---CEEEEEeCCccCC---CchH
Confidence 1235677777789999999999987 7799999999875 44566543 5999999999853 3799
Q ss_pred HHHHHHHHH
Q 030626 157 VRNFIKMIV 165 (174)
Q Consensus 157 ~~~f~~~~~ 165 (174)
|+||++.|+
T Consensus 180 ~~~f~~~~~ 188 (189)
T PRK13525 180 HRYFLEMVK 188 (189)
T ss_pred HHHHHHHhh
Confidence 999999875
No 49
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.94 E-value=1.1e-26 Score=173.68 Aligned_cols=142 Identities=27% Similarity=0.361 Sum_probs=104.1
Q ss_pred CCCEEEeCCCCCCCCCcch-----hHHHH-HH-cCCCCcEEeehHhHHHHHHH------------hCCeeccC-CC----
Q 030626 13 NPRGVLISPGPGAPQDSGI-----SLQTV-LE-LGPTVPLFGVCMGLQCIGEA------------FGGKIVRS-PL---- 68 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~-----~~~~i-~~-~~~~~PilGIC~G~Qll~~~------------~gg~v~~~-~~---- 68 (174)
++|+|||+|+..+..+... +...+ +. ...++|+||||+|+|+|+.+ ++|++.+. +.
T Consensus 41 ~~d~lIlpG~~~~~~~~~~l~~~~~~~~~~~~~~~~~~PvlGiC~G~q~l~~~~~e~~~~~glg~l~g~v~~~~~~~~~~ 120 (209)
T PRK13146 41 AADRVVLPGVGAFADCMRGLRAVGLGEAVIEAVLAAGRPFLGICVGMQLLFERGLEHGDTPGLGLIPGEVVRFQPDGPAL 120 (209)
T ss_pred CCCEEEECCCCcHHHHHHHHHHCCcHHHHHHHHHhCCCcEEEECHHHHHHhhcccccCCCCCcceEeEEEEEcCCCCCCC
Confidence 6899999886443222111 12233 33 35789999999999999999 88999886 21
Q ss_pred cccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC-ceEEEeeCCCCceEEEecCCCC
Q 030626 69 GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPES 147 (174)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~g~QfHPE~ 147 (174)
...+..|..+... .++++|+++++.+.++++|++.+.. ++ +..++|+++++ .++++.... ++||+|||||+
T Consensus 121 ~~p~~G~~~v~~~--~~~~lf~~~~~~~~v~~~Hs~~v~~---~~-~~~~la~s~~~~~~~a~~~~~--~i~GvQFHPE~ 192 (209)
T PRK13146 121 KVPHMGWNTVDQT--RDHPLFAGIPDGARFYFVHSYYAQP---AN-PADVVAWTDYGGPFTAAVARD--NLFATQFHPEK 192 (209)
T ss_pred ccCccChHHeeeC--CCChhccCCCCCCEEEEEeEEEEEc---CC-CCcEEEEEcCCCEEEEEEecC--CEEEEEcCCcc
Confidence 1223445555443 4678999999999999999999975 33 56888988765 467776543 59999999998
Q ss_pred cCCCchHHHHHHHHHH
Q 030626 148 IITTEGKTIVRNFIKM 163 (174)
Q Consensus 148 ~~~~~~~~l~~~f~~~ 163 (174)
. ++.|..|++||++.
T Consensus 193 s-~~~G~~ll~nfl~~ 207 (209)
T PRK13146 193 S-QDAGLALLRNFLAW 207 (209)
T ss_pred c-HHHHHHHHHHHHhh
Confidence 5 67899999999875
No 50
>PF07722 Peptidase_C26: Peptidase C26; InterPro: IPR011697 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. These peptidases have gamma-glutamyl hydrolase activity; that is they catalyse the cleavage of the gamma-glutamyl bond in poly-gamma-glutamyl substrates. They are structurally related to IPR000991 from INTERPRO, but contain extensions in four loops and at the C terminus []. They belong to MEROPS peptidase family C26 (gamma-glutamyl hydrolase family), clan PC. The majority of the sequences are classified as unassigned peptidases. ; GO: 0016787 hydrolase activity, 0006541 glutamine metabolic process; PDB: 1L9X_A 3FIJ_D.
Probab=99.94 E-value=1e-26 Score=174.65 Aligned_cols=136 Identities=29% Similarity=0.429 Sum_probs=91.3
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCC----c------ch-------h-HHHHH-HcCCCCcEEeehHhHHHHHHHhCCeec
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQD----S------GI-------S-LQTVL-ELGPTVPLFGVCMGLQCIGEAFGGKIV 64 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~----~------~~-------~-~~~i~-~~~~~~PilGIC~G~Qll~~~~gg~v~ 64 (174)
...+++.+ .+||||++||..+... . .. + +.+++ +.++++||||||+|||+|+.++||++.
T Consensus 50 ~~~~~~l~-~idGlll~GG~~Di~P~~y~~~~~~~~~~~~~~rd~~e~~l~~~a~~~~~PilGICrG~Q~lnv~~GGtl~ 128 (217)
T PF07722_consen 50 EELDELLD-RIDGLLLPGGGSDIDPALYGEEPSPESGYIDPERDIFELALIRNALGRGKPILGICRGMQLLNVAFGGTLY 128 (217)
T ss_dssp HHHHHHHH-CSSEEEE---SS-T-GGGGT---BTTSHHHHHHHHHHHHHHHHHHCCTT--EEEETHHHHHHHHHCCSSEE
T ss_pred HHHHHHHh-hcCEEEEcCCccchhHhhcCCcccccCCCcCHHHHHHHHHHHHHHHhcCCCEEEEcHHHHHHHHHhCCCce
Confidence 44555554 6899999999854410 0 00 1 12233 368999999999999999999999998
Q ss_pred cCCCccc----c------cccceeEeccCCCCCcccCCC--CceeecccccceecccCCCCCCcEEEEEcCCCceEEEee
Q 030626 65 RSPLGVM----H------GKSSLVYYDEKGEDGLLAGLS--NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARH 132 (174)
Q Consensus 65 ~~~~~~~----~------~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~ 132 (174)
+...... + .....+.. .+++++..+. ....++++|+++|++ ++++++++|++.|+.|+|++.
T Consensus 129 q~~~~~~~~~~~~~~~~~~~~h~v~i---~~~s~l~~~~~~~~~~vns~Hhq~v~~---l~~~l~v~A~s~Dg~iEaie~ 202 (217)
T PF07722_consen 129 QDIPDQPGFPDHRQHPQDFPSHPVRI---VPGSLLAKILGSEEIEVNSFHHQAVKP---LGEGLRVTARSPDGVIEAIES 202 (217)
T ss_dssp SCCCCSS-EEECEE-S-TS--EEEEE---ETTSTCCCTSHHCTEEEEEEECEEECC---HHCCEEEEEEECTSSEEEEEE
T ss_pred eecccCcCccccccccccccccccee---ccCchHHHHhCcCcceeecchhhhhhc---cCCCceEEEEecCCcEEEEEE
Confidence 8764310 1 11112222 2444555443 578999999999998 789999999999999999999
Q ss_pred CCCC-ceEEEecCCC
Q 030626 133 KKYK-HLQGVQFHPE 146 (174)
Q Consensus 133 ~~~~-~~~g~QfHPE 146 (174)
.+++ +++|+|||||
T Consensus 203 ~~~~~~~~GvQwHPE 217 (217)
T PF07722_consen 203 PEHKYPILGVQWHPE 217 (217)
T ss_dssp CCESS-EEEESS-CC
T ss_pred cCCCCCEEEEEeCCC
Confidence 9865 7999999999
No 51
>KOG1622 consensus GMP synthase [Nucleotide transport and metabolism]
Probab=99.94 E-value=3e-27 Score=187.25 Aligned_cols=148 Identities=28% Similarity=0.491 Sum_probs=122.2
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626 7 VSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 84 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~ 84 (174)
.+|...++.||||+|||.|+|+.+. +...+.+++ +|+||||+|||+|+..+||.|.+.. ..+.|.... .. ..
T Consensus 53 ~~i~~~~~rgiIiSGGP~SVya~dAP~~dp~if~~~--vpvLGICYGmQ~i~~~~Gg~V~~~~-~RE~G~~eI-~v--~~ 126 (552)
T KOG1622|consen 53 KTITEYGPRGIIISGGPNSVYAEDAPSFDPAIFELG--VPVLGICYGMQLINKLNGGTVVKGM-VREDGEDEI-EV--DD 126 (552)
T ss_pred hhhhcCCceEEEEeCCCCccccCcCCCCChhHhccC--CcceeehhHHHHHHHHhCCcccccc-ccCCCCceE-Ec--Cc
Confidence 4566678999999999999987654 557777776 9999999999999999999998876 334555432 22 23
Q ss_pred CCCcccCCCCce--eecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHH
Q 030626 85 EDGLLAGLSNPF--TAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIK 162 (174)
Q Consensus 85 ~~~l~~~~~~~~--~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~ 162 (174)
..++|+++-... .++..|++.+.+ .+.+|++.|+|.+..+.++.+...+ +||+|||||...++.|..+++||+-
T Consensus 127 ~~~lF~~~~~~~~~~VlltHgdsl~~---v~~g~kv~a~s~n~~va~i~~e~kk-iyglqfhpEV~~t~~g~~ll~nFl~ 202 (552)
T KOG1622|consen 127 SVDLFSGLHKTEFMTVLLTHGDSLSK---VPEGFKVVAFSGNKPVAGILNELKK-IYGLQFHPEVTLTPNGKELLKNFLF 202 (552)
T ss_pred hhhhhhhhcccceeeeeeccccchhh---ccccceeEEeecCcceeeehhhhhh-hhcCCCCCcccccCchhHHHHHHHH
Confidence 556888876544 489999999998 7899999999999989999988765 9999999999999999999999994
Q ss_pred HH
Q 030626 163 MI 164 (174)
Q Consensus 163 ~~ 164 (174)
.+
T Consensus 203 ~v 204 (552)
T KOG1622|consen 203 DV 204 (552)
T ss_pred HH
Confidence 43
No 52
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.94 E-value=3.4e-26 Score=169.41 Aligned_cols=137 Identities=24% Similarity=0.348 Sum_probs=95.3
Q ss_pred CCCEEEeCCCCCCCCCcch------hHHHHHHcCCCCcEEeehHhHHHHHHHhC------------CeeccCCC---ccc
Q 030626 13 NPRGVLISPGPGAPQDSGI------SLQTVLELGPTVPLFGVCMGLQCIGEAFG------------GKIVRSPL---GVM 71 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~------~~~~i~~~~~~~PilGIC~G~Qll~~~~g------------g~v~~~~~---~~~ 71 (174)
++|+||| ||+|.+.+... +.+.+++. ++||||||+|||+|+.+++ +++.+... ...
T Consensus 38 ~~d~iIl-PG~G~~~~~~~~l~~~~l~~~i~~~--~~PilGIClG~Qll~~~~~~~~~~~~lg~~~g~v~~~~~~~~~~p 114 (196)
T PRK13170 38 AADKLFL-PGVGTAQAAMDQLRERELIDLIKAC--TQPVLGICLGMQLLGERSEESGGVDCLGIIDGPVKKMTDFGLPLP 114 (196)
T ss_pred CCCEEEE-CCCCchHHHHHHHHHcChHHHHHHc--CCCEEEECHHHHHHhhhcccCCCCCCcccccEEEEECCCCCCCCC
Confidence 5899998 66666554432 33444443 6999999999999999973 34444321 122
Q ss_pred ccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCC
Q 030626 72 HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITT 151 (174)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~ 151 (174)
+..|..+... .++++++++++.+.++++|++.+. .+..++|+++++...+....+. ++||+|||||+. .+
T Consensus 115 ~~G~~~v~~~--~~~~l~~~l~~~~~v~~~Hs~~lp------~~~~~la~s~~~~~~~~~~~~~-~i~G~QFHPE~~-~~ 184 (196)
T PRK13170 115 HMGWNQVTPQ--AGHPLFQGIEDGSYFYFVHSYAMP------VNEYTIAQCNYGEPFSAAIQKD-NFFGVQFHPERS-GA 184 (196)
T ss_pred ccccceeEeC--CCChhhhCCCcCCEEEEECeeecC------CCCcEEEEecCCCeEEEEEEcC-CEEEEECCCCCc-cc
Confidence 3445545443 357799999999999999998763 3456778887654333333333 499999999995 68
Q ss_pred chHHHHHHHHH
Q 030626 152 EGKTIVRNFIK 162 (174)
Q Consensus 152 ~~~~l~~~f~~ 162 (174)
.|..+++||++
T Consensus 185 ~G~~~l~nfl~ 195 (196)
T PRK13170 185 AGAQLLKNFLE 195 (196)
T ss_pred ccHHHHHHHhh
Confidence 99999999985
No 53
>PRK14004 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.94 E-value=3.7e-26 Score=170.44 Aligned_cols=143 Identities=25% Similarity=0.316 Sum_probs=99.5
Q ss_pred CCCEEEeCCCCCCCCCcc------hhHHHHHH-cCCCCcEEeehHhHHHHHHHhC------------------CeeccCC
Q 030626 13 NPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG------------------GKIVRSP 67 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g------------------g~v~~~~ 67 (174)
++|+||+||+ +++.+.. .+.+.+++ ..+++|+||||+|||+|+.+++ +++.+.+
T Consensus 37 ~~d~iIlPG~-g~~~~~~~~l~~~gl~~~i~~~~~~~~pilGiC~G~Q~l~~~~~e~~~~~~~~~~~Glg~~~~~v~~~~ 115 (210)
T PRK14004 37 NSKALILPGD-GHFDKAMENLNSTGLRSTIDKHVESGKPLFGICIGFQILFESSEETNQGTKKEQIEGLGYIKGKIKKFE 115 (210)
T ss_pred cCCEEEECCC-CchHHHHHHHHHcCcHHHHHHHHHcCCCEEEECHhHHHHHHhcccccCCCcCcccCCcceeEEEEEEcC
Confidence 7899997766 5443321 23344444 6688999999999999999764 5555543
Q ss_pred C---cccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCC-Cc-eEEEeeCCCCceEEEe
Q 030626 68 L---GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED-GL-IMAARHKKYKHLQGVQ 142 (174)
Q Consensus 68 ~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~~-i~a~~~~~~~~~~g~Q 142 (174)
. ...|..|..+......++++|.++++.+.++++|++.... ...+.+++.+++ +. +.++..+ . ++||+|
T Consensus 116 ~~~~~~ph~Gw~~v~~~~~~~~~lf~~l~~~~~v~~~HS~~~~~----~~~l~~sa~~~~~g~~~~a~~~~-~-~i~GvQ 189 (210)
T PRK14004 116 GKDFKVPHIGWNRLQIRRKDKSKLLKGIGDQSFFYFIHSYRPTG----AEGNAITGLCDYYQEKFPAVVEK-E-NIFGTQ 189 (210)
T ss_pred CCCCcCCccCcccceeccCCCCccccCCCCCCEEEEeceeecCC----CCcceEEEeeeECCEEEEEEEec-C-CEEEEe
Confidence 1 2346667666554335678999999999999999986532 233455665544 33 4455543 3 599999
Q ss_pred cCCCCcCCCchHHHHHHHHHH
Q 030626 143 FHPESIITTEGKTIVRNFIKM 163 (174)
Q Consensus 143 fHPE~~~~~~~~~l~~~f~~~ 163 (174)
||||+.. +.|..|++||++.
T Consensus 190 FHPE~s~-~~G~~iL~nfl~~ 209 (210)
T PRK14004 190 FHPEKSH-THGLKLLENFIEF 209 (210)
T ss_pred CCcccCc-hhHHHHHHHHHhh
Confidence 9999965 7999999999875
No 54
>PRK13527 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.94 E-value=3.5e-26 Score=169.95 Aligned_cols=143 Identities=22% Similarity=0.326 Sum_probs=102.1
Q ss_pred CCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec--cC--
Q 030626 13 NPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD--EK-- 83 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~--~~-- 83 (174)
++|+|||+||+++..+. ....+.+++ ...++|+||||+|+|+|+.++||...........|........ ..
T Consensus 43 ~~d~iii~GG~~~~~~~~~~~~~~~~~i~~~~~~~~pilGIC~G~Qll~~~~gg~~v~~~~~~~lG~~~~~v~~~~~g~~ 122 (200)
T PRK13527 43 DCDALIIPGGESTTIGRLMKREGILDEIKEKIEEGLPILGTCAGLILLAKEVGDDRVTKTEQPLLGLMDVTVKRNAFGRQ 122 (200)
T ss_pred cCCEEEECCCcHHHHHHHHhhccHHHHHHHHHHCCCeEEEECHHHHHHHhhhcCCccCCCCCceeeeeEEEEeeccccCc
Confidence 68999999998876422 123455554 5678999999999999999999843222222334433221111 00
Q ss_pred ----CCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHH
Q 030626 84 ----GEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRN 159 (174)
Q Consensus 84 ----~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~ 159 (174)
..+.+|.++++.+.++++|++.+.. ++++++++|+++++.+ +++.. ++||+|||||.+. + .+|+++
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~H~~~v~~---lp~~~~~la~~~~~~~-a~~~~---~~~g~QfHPE~~~--~-~~l~~~ 192 (200)
T PRK13527 123 RDSFEAEIDLSGLDGPFHAVFIRAPAITK---VGGDVEVLAKLDDRIV-AVEQG---NVLATAFHPELTD--D-TRIHEY 192 (200)
T ss_pred cccEEEeEeccccCCcceEEEEccccccc---cCCCeEEEEEECCEEE-EEEEC---CEEEEEeCCCCCC--C-CHHHHH
Confidence 1234577778889999999999976 7799999999998865 66532 5999999999752 2 899999
Q ss_pred HHHHHH
Q 030626 160 FIKMIV 165 (174)
Q Consensus 160 f~~~~~ 165 (174)
|++.+.
T Consensus 193 f~~~~~ 198 (200)
T PRK13527 193 FLKKVK 198 (200)
T ss_pred HHHHHh
Confidence 999874
No 55
>cd01748 GATase1_IGP_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). Type 1 glutamine amidotransferase (GATase1) domain found in imidazole glycerol phosphate synthase (IGPS). IGPS incorporates ammonia derived from glutamine into N1-[(5'-phosphoribulosyl)-formimino]-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to form 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR) and imidazole glycerol phosphate (IGP). The glutamine amidotransferase domain generates the ammonia nucleophile which is channeled from the glutaminase active site to the PRFAR active site. IGPS belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.94 E-value=2.2e-26 Score=170.82 Aligned_cols=138 Identities=27% Similarity=0.379 Sum_probs=99.9
Q ss_pred CCCEEEeCCCCCCCCCc------chhHHHHHH-cCCCCcEEeehHhHHHHHHH------------hCCeeccCCCc----
Q 030626 13 NPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIGEA------------FGGKIVRSPLG---- 69 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~------~~~~~~i~~-~~~~~PilGIC~G~Qll~~~------------~gg~v~~~~~~---- 69 (174)
++|+|||+|| +++.+. ....+.+++ ...++|+||||+|+|+|+.+ ++|++.+.+..
T Consensus 36 ~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pilGiC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~ 114 (198)
T cd01748 36 SADKLILPGV-GAFGDAMANLRERGLIEALKEAIASGKPFLGICLGMQLLFESSEEGGGTKGLGLIPGKVVRFPASEGLK 114 (198)
T ss_pred cCCEEEECCC-CcHHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhccccccCCCCCCCCCcceEEEECCCCCCce
Confidence 6899999665 433221 123455554 56789999999999999998 78888886532
Q ss_pred -ccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCc-eEEEeeCCCCceEEEecCCCC
Q 030626 70 -VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGL-IMAARHKKYKHLQGVQFHPES 147 (174)
Q Consensus 70 -~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~-i~a~~~~~~~~~~g~QfHPE~ 147 (174)
.++|... +... .++++|+++++.+.++++|++.+.. + +.+.++|+++++. .+++. .+. ++||+|||||+
T Consensus 115 ~~~~G~~~-v~~~--~~~~lf~~l~~~~~v~~~Hs~~v~~---~-~~~~~la~s~~~~~~~~~~-~~~-~i~GvQFHPE~ 185 (198)
T cd01748 115 VPHMGWNQ-LEIT--KESPLFKGIPDGSYFYFVHSYYAPP---D-DPDYILATTDYGGKFPAAV-EKD-NIFGTQFHPEK 185 (198)
T ss_pred EEEeccce-EEEC--CCChhhhCCCCCCeEEEEeEEEEec---C-CcceEEEEecCCCeEEEEE-EcC-CEEEEECCCcc
Confidence 1334443 3332 4678999999999999999999974 3 4577889887654 44443 333 49999999999
Q ss_pred cCCCchHHHHHHHH
Q 030626 148 IITTEGKTIVRNFI 161 (174)
Q Consensus 148 ~~~~~~~~l~~~f~ 161 (174)
. ++.|..+++||+
T Consensus 186 ~-~~~g~~~~~nf~ 198 (198)
T cd01748 186 S-GKAGLKLLKNFL 198 (198)
T ss_pred c-cHhHHHHHHhhC
Confidence 5 678999999995
No 56
>CHL00188 hisH imidazole glycerol phosphate synthase subunit hisH; Provisional
Probab=99.94 E-value=4.2e-26 Score=170.18 Aligned_cols=141 Identities=19% Similarity=0.242 Sum_probs=98.9
Q ss_pred CCCEEEeCCCCCCCCCcc------hhHHHHHH-cCCCCcEEeehHhHHHHHHH-----------hCCeeccCCC----cc
Q 030626 13 NPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIGEA-----------FGGKIVRSPL----GV 70 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~~~PilGIC~G~Qll~~~-----------~gg~v~~~~~----~~ 70 (174)
++|+||+ ||++++.... .+.+.+++ ...++|+||||+|||+|+.. +.|++.+.+. ..
T Consensus 39 ~~d~iIl-PG~g~~~~~~~~l~~~gl~~~i~~~~~~~~pvlGIClG~Qll~~~~~~~~~~glg~~~G~v~~~~~~~~~~~ 117 (210)
T CHL00188 39 QVHALVL-PGVGSFDLAMKKLEKKGLITPIKKWIAEGNPFIGICLGLHLLFETSEEGKEEGLGIYKGQVKRLKHSPVKVI 117 (210)
T ss_pred hCCEEEE-CCCCchHHHHHHHHHCCHHHHHHHHHHcCCCEEEECHHHHHHhhccccCCcCCccceeEEEEECCCCCCCcc
Confidence 5799886 5567654221 12234444 56789999999999999986 4567776632 22
Q ss_pred cccccceeEeccCC----CCCcccCCCCceeecccccceecccCCCCCCcEEEEEc----CCCceEEEeeCCCCceEEEe
Q 030626 71 MHGKSSLVYYDEKG----EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT----EDGLIMAARHKKYKHLQGVQ 142 (174)
Q Consensus 71 ~~~~~~~~~~~~~~----~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s----~~~~i~a~~~~~~~~~~g~Q 142 (174)
.|..|..+...... .+++|+++++.+.++++|++.+.+ ++...++.+ .++.+++++.. +++|+|
T Consensus 118 p~~Gw~~v~~~~~~~~~~~~~lf~~l~~~~~v~~~HS~~v~p-----~~~~~l~~t~~~~~~~~v~a~~~~---~i~GvQ 189 (210)
T CHL00188 118 PHMGWNRLECQNSECQNSEWVNWKAWPLNPWAYFVHSYGVMP-----KSQACATTTTFYGKQQMVAAIEYD---NIFAMQ 189 (210)
T ss_pred CccCCccceecCCcccccCChhhcCCCCCCEEEEeCccEecC-----CCCceEEEEEecCCcceEEEEecC---CEEEEe
Confidence 34556665544221 156999999999999999999853 223333333 24558999853 499999
Q ss_pred cCCCCcCCCchHHHHHHHHHH
Q 030626 143 FHPESIITTEGKTIVRNFIKM 163 (174)
Q Consensus 143 fHPE~~~~~~~~~l~~~f~~~ 163 (174)
||||+. ++.|..|++||+++
T Consensus 190 FHPE~s-~~~G~~il~nfl~~ 209 (210)
T CHL00188 190 FHPEKS-GEFGLWLLREFMKK 209 (210)
T ss_pred cCCccc-cHhHHHHHHHHHhh
Confidence 999995 88999999999975
No 57
>PRK13141 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.94 E-value=4e-26 Score=170.27 Aligned_cols=143 Identities=31% Similarity=0.422 Sum_probs=104.5
Q ss_pred CCCEEEeCCCCCCCCCc------chhHHHHHH-cCCCCcEEeehHhHHHHHHH------------hCCeeccCCCc----
Q 030626 13 NPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIGEA------------FGGKIVRSPLG---- 69 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~------~~~~~~i~~-~~~~~PilGIC~G~Qll~~~------------~gg~v~~~~~~---- 69 (174)
++|+|||+|| +...+. ....+.+++ ...++|+||||+|+|+|+.+ +++++.+.+.+
T Consensus 37 ~~d~iiipG~-~~~~~~~~~~~~~~~~~~i~~~~~~~~pvlGIC~G~Qll~~~~~~~~~~~~lg~l~g~v~~~~~~~~~~ 115 (205)
T PRK13141 37 AADGVILPGV-GAFPDAMANLRERGLDEVIKEAVASGKPLLGICLGMQLLFESSEEFGETEGLGLLPGRVRRFPPEEGLK 115 (205)
T ss_pred cCCEEEECCC-CchHHHHHHHHHcChHHHHHHHHHCCCcEEEECHHHHHhhhccccCCCCCccceEEEEEEEcCCCCCCc
Confidence 6899999875 332221 123344554 56789999999999999997 67888876521
Q ss_pred ccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC-ceEEEeeCCCCceEEEecCCCCc
Q 030626 70 VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESI 148 (174)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~g~QfHPE~~ 148 (174)
..+..+..+... .++++|+.++..+.++.+|++.+. +++++.++|+++++ .++++.... ++||+|||||+.
T Consensus 116 ~~~~g~~~i~~~--~~~~l~~~l~~~~~v~~~Hs~~v~----~~~~~~v~a~~~~~~~~~a~~~~~--~i~GvQfHPE~~ 187 (205)
T PRK13141 116 VPHMGWNQLELK--KESPLLKGIPDGAYVYFVHSYYAD----PCDEEYVAATTDYGVEFPAAVGKD--NVFGAQFHPEKS 187 (205)
T ss_pred ccEecCccceeC--CCChhhhCCCCCCEEEEECeeEec----cCCcCeEEEEEeCCcEEEEEEecC--CEEEEeCCCccc
Confidence 123233334333 367899999888888899999995 35678899988766 677876543 599999999985
Q ss_pred CCCchHHHHHHHHHHHH
Q 030626 149 ITTEGKTIVRNFIKMIV 165 (174)
Q Consensus 149 ~~~~~~~l~~~f~~~~~ 165 (174)
.+.+.+||+||++.|.
T Consensus 188 -~~~g~~l~~~fl~~~~ 203 (205)
T PRK13141 188 -GDVGLKILKNFVEMVE 203 (205)
T ss_pred -hHHHHHHHHHHHHHhh
Confidence 5689999999998763
No 58
>PRK05380 pyrG CTP synthetase; Validated
Probab=99.93 E-value=1.6e-25 Score=183.94 Aligned_cols=156 Identities=17% Similarity=0.272 Sum_probs=103.9
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHH-HcCCCCcEEeehHhHHHHHHHhCCeeccCCC--ccccc--ccceeE-e-c----
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVL-ELGPTVPLFGVCMGLQCIGEAFGGKIVRSPL--GVMHG--KSSLVY-Y-D---- 81 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~-~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~--~~~~~--~~~~~~-~-~---- 81 (174)
++||||++||+|.....+.. ..++ .+..++|+||||+|||+|+.++|+++..... ..+.. ...++. . .
T Consensus 343 ~~DGIIlpGGfG~~~~~g~i-~~i~~a~e~~iPiLGIClGmQll~va~Ggnv~g~qda~s~E~~~~t~~pvI~~~~~q~~ 421 (533)
T PRK05380 343 GVDGILVPGGFGERGIEGKI-LAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEDANSTEFDPDTPHPVIDLMPEQKD 421 (533)
T ss_pred cCCEEEecCCCCccccccHH-HHHHHHHHCCCcEEEEchHHHHHHHHhcccccCcccCcccccCCCCCCCeEeecccccc
Confidence 68999999999986655443 3443 3567899999999999999999999953321 11111 001110 0 0
Q ss_pred ---------------cCCCCCcccCCC--Cceeecccccceeccc---CCCCCCcEEEEEcCC-CceEEEeeCCCCceEE
Q 030626 82 ---------------EKGEDGLLAGLS--NPFTAGRYHSLVIEKE---SFPSDALEVTAWTED-GLIMAARHKKYKHLQG 140 (174)
Q Consensus 82 ---------------~~~~~~l~~~~~--~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~-~~i~a~~~~~~~~~~g 140 (174)
...+++++..+. ......+.|.+.|++. .+...+++++|+++| +.|++++.+++|+++|
T Consensus 422 ~~~~ggtmrlg~h~v~i~~gS~l~~iyg~~~i~ErhrHryeVNs~h~qal~~~GL~vsa~s~DgglVEaIEl~~hpfflG 501 (533)
T PRK05380 422 VSDLGGTMRLGAYPCKLKPGTLAAEIYGKEEIYERHRHRYEVNNKYREQLEKAGLVFSGTSPDGRLVEIVELPDHPWFVG 501 (533)
T ss_pred ccccCCcccccceeEEECCCChHHHHhCCCceeeecccceecCHHHHHHHhhcCeEEEEEcCCCCcEEEEEeCCCCEEEE
Confidence 001223333322 1223344555555431 122358999999976 5999999999998889
Q ss_pred EecCCCCcCCC-chHHHHHHHHHHHHHHHH
Q 030626 141 VQFHPESIITT-EGKTIVRNFIKMIVRKEA 169 (174)
Q Consensus 141 ~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~ 169 (174)
+|||||+.+.+ ++.+||.+|++++.+.+.
T Consensus 502 VQwHPE~~s~p~~~~pLF~~FV~Aa~~~~~ 531 (533)
T PRK05380 502 VQFHPEFKSRPRRPHPLFAGFVKAALENKK 531 (533)
T ss_pred EeCCCCCCCCCCchHHHHHHHHHHHHHHhh
Confidence 99999998765 578999999999987543
No 59
>PRK13152 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.93 E-value=1.6e-25 Score=166.59 Aligned_cols=143 Identities=21% Similarity=0.317 Sum_probs=100.7
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcch------hHHHHHH--cCCCCcEEeehHhHHHHHHH------------hCCeecc
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGI------SLQTVLE--LGPTVPLFGVCMGLQCIGEA------------FGGKIVR 65 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~------~~~~i~~--~~~~~PilGIC~G~Qll~~~------------~gg~v~~ 65 (174)
.+++. ++|+||| +|++++.+... +...+++ +..++|+||||+|||+|+.+ ++|++.+
T Consensus 32 ~~~l~--~~d~lil-PG~g~~~~~~~~l~~~~~~~~l~~~~~~~~~pvlGiC~G~Q~l~~~~~~~~~~~~lg~~~g~v~~ 108 (201)
T PRK13152 32 PKDLQ--KADKLLL-PGVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFIEGEVVK 108 (201)
T ss_pred HHHHc--CCCEEEE-CCCCchHHHHHHHHHcCcHHHHHHHHHhCCCcEEEECHhHHHHhhcccccCCcCCcccccEEEEE
Confidence 34453 5899999 66677654422 2234443 46789999999999999987 1256655
Q ss_pred CCC----cccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC--ceEEEeeCCCCceE
Q 030626 66 SPL----GVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG--LIMAARHKKYKHLQ 139 (174)
Q Consensus 66 ~~~----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~--~i~a~~~~~~~~~~ 139 (174)
... ...++.|..+... .++++|+++++.+.++++|++.+.. ++ ..+++.++++ .+++++. . +++
T Consensus 109 ~~~~~~~~~~~~g~~~v~~~--~~~~l~~~l~~~~~~~~vHS~~v~~---~~--~~v~a~~~~g~~~~~a~~~--~-~i~ 178 (201)
T PRK13152 109 FEEDLNLKIPHMGWNELEIL--KQSPLYQGIPEKSDFYFVHSFYVKC---KD--EFVSAKAQYGHKFVASLQK--D-NIF 178 (201)
T ss_pred CCCCCCCcCCccCeEEEEEC--CCChhhhCCCCCCeEEEEcccEeec---CC--CcEEEEECCCCEEEEEEec--C-CEE
Confidence 431 1235566666543 4678999998888999999999964 32 4567777665 3556653 2 599
Q ss_pred EEecCCCCcCCCchHHHHHHHHH
Q 030626 140 GVQFHPESIITTEGKTIVRNFIK 162 (174)
Q Consensus 140 g~QfHPE~~~~~~~~~l~~~f~~ 162 (174)
|+|||||+. .+.+..||+||++
T Consensus 179 GvQFHPE~~-~~~g~~ll~~Fl~ 200 (201)
T PRK13152 179 ATQFHPEKS-QNLGLKLLENFAR 200 (201)
T ss_pred EEeCCCeec-ChhhHHHHHHHHh
Confidence 999999985 6689999999986
No 60
>TIGR00337 PyrG CTP synthase. CTP synthase is involved in pyrimidine ribonucleotide/ribonucleoside metabolism. The enzyme catalyzes the reaction L-glutamine + H2O + UTP + ATP = CTP + phosphate + ADP + L-glutamate. The enzyme exists as a dimer of identical chains that aggregates as a tetramer. This gene has been found circa 500 bp 5' upstream of enolase in both beta (Nitrosomonas europaea) and gamma (E.coli) subdivisions of proteobacterium (FEMS Microbiol Lett 1998 Aug 1;165(1):153-7).
Probab=99.93 E-value=1.4e-25 Score=184.16 Aligned_cols=150 Identities=18% Similarity=0.233 Sum_probs=104.9
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHH-HcCCCCcEEeehHhHHHHHHHhCCeeccCCCccc----ccccceeEeccC----
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVL-ELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVM----HGKSSLVYYDEK---- 83 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~-~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~----~~~~~~~~~~~~---- 83 (174)
++||||++||++++...+.. ..++ .+..++|+||||+|||+|+.++|+++..++.... .+...++.....
T Consensus 343 ~~dGIiLpGG~G~~~~~g~i-~ai~~a~e~~iP~LGIClG~Qll~i~~grnv~gl~~A~s~Ef~~~~~~pVi~l~~~~~~ 421 (525)
T TIGR00337 343 GVDGILVPGGFGERGVEGKI-LAIKYARENNIPFLGICLGMQLAVIEFARNVLGLKGANSTEFDPETKYPVVDLLPEQKD 421 (525)
T ss_pred CCCEEEeCCCCCChhhcChH-HHHHHHHHcCCCEEEEcHHHHHHHHHHHHHhcCCCCCCccccCCCCCCCeeeccCcccc
Confidence 48999999999998765554 3333 3567899999999999999999999888763211 011222211000
Q ss_pred -----------------CCCCcccCC-C-Cceeecccccceeccc---CCCCCCcEEEEEcCC-CceEEEeeCCCCceEE
Q 030626 84 -----------------GEDGLLAGL-S-NPFTAGRYHSLVIEKE---SFPSDALEVTAWTED-GLIMAARHKKYKHLQG 140 (174)
Q Consensus 84 -----------------~~~~l~~~~-~-~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~-~~i~a~~~~~~~~~~g 140 (174)
.+++++..+ . ......+.|++.|+.. .+...+++++|++.| +.|+|++.+++|+++|
T Consensus 422 ~~~~GGTmRLG~h~v~i~~gS~L~~iyG~~~i~erhrHry~VNs~h~q~l~~~GL~vsa~s~Dgg~VEaIE~~~hpfflG 501 (525)
T TIGR00337 422 ISDLGGTMRLGLYPCILKPGTLAFKLYGKEEVYERHRHRYEVNNEYREQLENKGLIVSGTSPDGRLVEIIELPDHPFFVA 501 (525)
T ss_pred cccCCceeeccceEEEECCCChHHHHhCCCceeecccceEEECHHHHHhhhhCCeEEEEEECCCCEEEEEEECCCCeEEE
Confidence 112222222 1 1234567788888652 233479999999988 5899999999998889
Q ss_pred EecCCCCcCCC-chHHHHHHHHHH
Q 030626 141 VQFHPESIITT-EGKTIVRNFIKM 163 (174)
Q Consensus 141 ~QfHPE~~~~~-~~~~l~~~f~~~ 163 (174)
+|||||+.+.+ +..+||..|+++
T Consensus 502 VQwHPE~~s~p~~~~~LF~~FV~A 525 (525)
T TIGR00337 502 CQFHPEFTSRPNRPHPLFLGFVKA 525 (525)
T ss_pred EecCCCCCCCCCchhHHHHHHHhC
Confidence 99999998765 567999999863
No 61
>PRK13181 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.93 E-value=1.2e-25 Score=167.02 Aligned_cols=140 Identities=25% Similarity=0.303 Sum_probs=97.4
Q ss_pred CCCEEEeCCCCCCCCCc------chhHHHHHH-cCCCCcEEeehHhHHHHHHH-----------hCCeeccCCCc----c
Q 030626 13 NPRGVLISPGPGAPQDS------GISLQTVLE-LGPTVPLFGVCMGLQCIGEA-----------FGGKIVRSPLG----V 70 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~------~~~~~~i~~-~~~~~PilGIC~G~Qll~~~-----------~gg~v~~~~~~----~ 70 (174)
++|+||++|| +++... ....+.+++ ...++|+||||+|+|+|+.+ +++++.+.+.. .
T Consensus 37 ~~d~lilpG~-g~~~~~~~~l~~~~~~~~i~~~~~~~~PvlGiC~G~Qll~~~~~~~~~~glg~l~~~v~~~~~~~~~~~ 115 (199)
T PRK13181 37 GADKVILPGV-GAFGQAMRSLRESGLDEALKEHVEKKQPVLGICLGMQLLFESSEEGNVKGLGLIPGDVKRFRSEPLKVP 115 (199)
T ss_pred cCCEEEECCC-CCHHHHHHHHHHCChHHHHHHHHHCCCCEEEECHhHHHhhhhcccCCcCCcceEEEEEEEcCCCCCCCC
Confidence 6899998765 433211 112344443 56789999999999999999 77888886532 2
Q ss_pred cccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCC
Q 030626 71 MHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIIT 150 (174)
Q Consensus 71 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~ 150 (174)
+.|.. .+... .++++|+++++.+.++.+|++.+.. + +.+.++|+++++........+. ++||+|||||+. +
T Consensus 116 ~~G~~-~v~~~--~~~~lf~~l~~~~~~~~~Hs~~v~~---~-~~~~~lA~s~~~~~~~~~~~~~-~i~GvQFHPE~~-~ 186 (199)
T PRK13181 116 QMGWN-SVKPL--KESPLFKGIEEGSYFYFVHSYYVPC---E-DPEDVLATTEYGVPFCSAVAKD-NIYAVQFHPEKS-G 186 (199)
T ss_pred ccCcc-ccccC--CCChhHcCCCCCCEEEEeCeeEecc---C-CcccEEEEEcCCCEEEEEEECC-CEEEEECCCccC-C
Confidence 23333 23222 4678999999889999999999864 3 3456888887644322222233 499999999985 6
Q ss_pred CchHHHHHHHHH
Q 030626 151 TEGKTIVRNFIK 162 (174)
Q Consensus 151 ~~~~~l~~~f~~ 162 (174)
+.+..|++||++
T Consensus 187 ~~g~~ll~nfl~ 198 (199)
T PRK13181 187 KAGLKLLKNFAE 198 (199)
T ss_pred HHHHHHHHHHHh
Confidence 789999999986
No 62
>cd01747 GATase1_Glutamyl_Hydrolase Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. Type 1 glutamine amidotransferase (GATase1) domain found in gamma-Glutamyl Hydrolase. gamma-Glutamyl Hydrolase catalyzes the cleavage of the gamma-glutamyl chain of folylpoly-gamma-glutamyl substrates and is a central enzyme in folyl and antifolyl poly-gamma-glutamate metabolism. GATase activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. gamma-Glutamyl hydrolases belong to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site.
Probab=99.93 E-value=7.3e-25 Score=169.47 Aligned_cols=138 Identities=22% Similarity=0.328 Sum_probs=97.0
Q ss_pred CCCEEEeCCCCCCCCC--cchhH----HHHHH-c--CCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec-c
Q 030626 13 NPRGVLISPGPGAPQD--SGISL----QTVLE-L--GPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-E 82 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~--~~~~~----~~i~~-~--~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~-~ 82 (174)
.+||||++||+.+... ..... +...+ . +..+|+||||+|||+|+.++||++........++...++... .
T Consensus 54 ~~dG~l~~Gg~~~~~~~~~~~~~~~l~~~a~~~~~~g~~~Pv~GiClG~QlL~~~~gg~~~~~~~~~~~~~~~~l~~t~~ 133 (273)
T cd01747 54 SINGILFPGGAVDIDTSGYARTAKIIYNLALERNDAGDYFPVWGTCLGFELLTYLTSGETLLLEATEATNSALPLNFTED 133 (273)
T ss_pred hCCEEEECCCCCcCCccccchHHHHHHHHHHHhhhcCCCCcEEEEcHHHHHHHHHhCCCccccCCCccccceEEEEEccc
Confidence 5899999999877642 22222 22222 1 235999999999999999999976443323345655555554 3
Q ss_pred CCCCCcccCCCC--------ceeecccccceecccCCC-----CCCcEEEEEcCC--Cc--eEEEeeCCCCceEEEecCC
Q 030626 83 KGEDGLLAGLSN--------PFTAGRYHSLVIEKESFP-----SDALEVTAWTED--GL--IMAARHKKYKHLQGVQFHP 145 (174)
Q Consensus 83 ~~~~~l~~~~~~--------~~~~~~~H~~~v~~~~l~-----~~~~~~~a~s~~--~~--i~a~~~~~~~~~~g~QfHP 145 (174)
..++++|++++. ...++++|+++++++++. ...+++++++.+ +. |++++++++| ++|+||||
T Consensus 134 ~~~s~lF~~~p~~l~~~l~~~~~~~~~Hs~~v~~~~~~~~~~l~~~~~vla~~~d~~g~~fis~ie~~~~p-i~gvQFHP 212 (273)
T cd01747 134 ALQSRLFKRFPPDLLKSLATEPLTMNNHRYGISPENFTENGLLSDFFNVLTTNDDWNGVEFISTVEAYKYP-IYGVQWHP 212 (273)
T ss_pred cccChhhhcCCHHHHHHHhcccHHHhhcccccCHhhcccccccccceEEEEEEecCCCceEEEEEEecCCc-eEEEecCC
Confidence 346788888864 456889999999765443 245789998755 43 7899999887 99999999
Q ss_pred CCcCCC
Q 030626 146 ESIITT 151 (174)
Q Consensus 146 E~~~~~ 151 (174)
|+...+
T Consensus 213 Eks~fe 218 (273)
T cd01747 213 EKNAFE 218 (273)
T ss_pred Cccccc
Confidence 986554
No 63
>PLN02327 CTP synthase
Probab=99.93 E-value=4.5e-25 Score=181.58 Aligned_cols=159 Identities=20% Similarity=0.245 Sum_probs=111.6
Q ss_pred cCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCc--cccc--ccceeE--ecc---
Q 030626 12 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VMHG--KSSLVY--YDE--- 82 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~--~~~~--~~~~~~--~~~--- 82 (174)
.++|||+++||+|+....+.....-+.+.+++|+||||+|||+++.+++.++..++.. .+.. ...++. ..+
T Consensus 361 ~~~DGIvvpGGfG~~~~~G~i~ai~~are~~iP~LGIClGmQl~viefaRnvlG~~dAnS~Efdp~t~~pvI~~m~e~~~ 440 (557)
T PLN02327 361 KGADGILVPGGFGDRGVEGKILAAKYARENKVPYLGICLGMQIAVIEFARSVLGLKDANSTEFDPETPNPCVIFMPEGSK 440 (557)
T ss_pred ccCCEEEeCCCCCCcccccHHHHHHHHHHcCCCEEEEcHHHHHHHHHHHHhhcCCcCCCccccCCCCCCCEEEEehhccc
Confidence 3689999999999887776654333346789999999999999999999988776521 1111 111111 100
Q ss_pred -C---------------CCCCcccCCCC---ceeecccccceeccc---CCCCCCcEEEEEcCCC-ceEEEeeCCCCceE
Q 030626 83 -K---------------GEDGLLAGLSN---PFTAGRYHSLVIEKE---SFPSDALEVTAWTEDG-LIMAARHKKYKHLQ 139 (174)
Q Consensus 83 -~---------------~~~~l~~~~~~---~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~ 139 (174)
. .++++...+.. .....+.|+|+++++ .+...+++++|++.|+ .+++++..++++++
T Consensus 441 ~~~GGtMRLG~~~~~~~~~~S~l~~iYg~~~~VnerHrHRYeVN~q~v~~le~~gL~vsa~s~dg~~IEaiE~~~~pffv 520 (557)
T PLN02327 441 THMGGTMRLGSRRTYFQTPDCKSAKLYGNVSFVDERHRHRYEVNPEMVPRLEKAGLSFVGKDETGRRMEIVELPSHPFFV 520 (557)
T ss_pred ccCCceEECCCcccccCCCCCHHHHHhCCccceeeeeccccccCHHHHHHHhhcCcEEEEEcCCCCEEEEEEeCCCCEEE
Confidence 0 01122222221 245677788888764 2335899999999887 69999999999777
Q ss_pred EEecCCCCcCCC-chHHHHHHHHHHHHHHHHh
Q 030626 140 GVQFHPESIITT-EGKTIVRNFIKMIVRKEAA 170 (174)
Q Consensus 140 g~QfHPE~~~~~-~~~~l~~~f~~~~~~~~~~ 170 (174)
|+|||||+.+.+ +..++|..|++++.+...+
T Consensus 521 GVQfHPE~~s~p~~~~pLF~~Fv~Aa~~~~~~ 552 (557)
T PLN02327 521 GVQFHPEFKSRPGKPSPLFLGLIAAASGQLDA 552 (557)
T ss_pred EEEcCCCCCCCCCCchHHHHHHHHHHHHhHHh
Confidence 999999998765 4579999999999876554
No 64
>KOG3179 consensus Predicted glutamine synthetase [Nucleotide transport and metabolism]
Probab=99.92 E-value=2.4e-25 Score=160.25 Aligned_cols=132 Identities=20% Similarity=0.238 Sum_probs=107.4
Q ss_pred cCCCEEEeCCCCCCCCCcchhHHHHH----H-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEec-cCCC
Q 030626 12 KNPRGVLISPGPGAPQDSGISLQTVL----E-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYD-EKGE 85 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~~~~~~~i~----~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~-~~~~ 85 (174)
.+|||+||+|+..+......|+..+. + ...++||+|||+|||++|++.||+|.+.+.+...+......+. ....
T Consensus 58 ~ky~gfvIsGS~~dAf~d~dWI~KLcs~~kkld~mkkkvlGICFGHQiiara~Gg~Vgra~KG~~~~lg~itivk~~~~~ 137 (245)
T KOG3179|consen 58 EKYDGFVISGSKHDAFSDADWIKKLCSFVKKLDFMKKKVLGICFGHQIIARAKGGKVGRAPKGPDLGLGSITIVKDAEKP 137 (245)
T ss_pred hhhceEEEeCCcccccccchHHHHHHHHHHHHHhhccceEEEeccHHHHHHhhCCccccCCCCCcccccceEEEEecccc
Confidence 36899999999999888877764432 3 2456999999999999999999999999876543333322222 2345
Q ss_pred CCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCc
Q 030626 86 DGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 148 (174)
Q Consensus 86 ~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~ 148 (174)
..+|..+|.++.....|++.+-. +|.+++++|+|+++.++++...+ +++++|.|||+.
T Consensus 138 ~~yFG~~~~~l~IikcHqDevle---~PE~a~llasSe~ceve~fs~~~--~~l~fQGHPEyn 195 (245)
T KOG3179|consen 138 EKYFGEIPKSLNIIKCHQDEVLE---LPEGAELLASSEKCEVEMFSIED--HLLCFQGHPEYN 195 (245)
T ss_pred hhhcccchhhhhHHhhcccceec---CCchhhhhccccccceEEEEecc--eEEEecCCchhh
Confidence 67888888899999999999977 78999999999999999999887 599999999984
No 65
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.92 E-value=7.6e-25 Score=162.76 Aligned_cols=142 Identities=30% Similarity=0.387 Sum_probs=98.3
Q ss_pred CCCEEEeCCCCCCCCCcch----hHHHHHH-cCCCCcEEeehHhHHHHHHH------------hCCeeccCCCcc--ccc
Q 030626 13 NPRGVLISPGPGAPQDSGI----SLQTVLE-LGPTVPLFGVCMGLQCIGEA------------FGGKIVRSPLGV--MHG 73 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~----~~~~i~~-~~~~~PilGIC~G~Qll~~~------------~gg~v~~~~~~~--~~~ 73 (174)
++|+|||+||. ...+... ..+.+++ ..+++|+||||+|+|+|+.+ ++|++.+.+.+. .+.
T Consensus 38 ~~d~iii~G~~-~~~~~~~~~~~~~~~i~~~~~~~~PilgIC~G~q~l~~~~~~g~~~~~lg~~~g~v~~~~~~~~~~~~ 116 (200)
T PRK13143 38 DADGIVLPGVG-AFGAAMENLSPLRDVILEAARSGKPFLGICLGMQLLFESSEEGGGVRGLGLFPGRVVRFPAGVKVPHM 116 (200)
T ss_pred cCCEEEECCCC-CHHHHHHHHHHHHHHHHHHHHcCCCEEEECHHHHHHhhhhccCCCCCCcceeeEEEEEcCCCCCCCee
Confidence 68999998753 2222212 2234443 56789999999999999986 678887654211 122
Q ss_pred ccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCC-ceEEEeeCCCCceEEEecCCCCcCCCc
Q 030626 74 KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDG-LIMAARHKKYKHLQGVQFHPESIITTE 152 (174)
Q Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~-~i~a~~~~~~~~~~g~QfHPE~~~~~~ 152 (174)
.+..+... .+++++++++ ...++++|++.+. ++++..++|+++++ .++++...+ ++||+|||||+. .+.
T Consensus 117 g~~~v~~~--~~~~l~~~l~-~~~~~~~Hs~~~~----~~~~~~~la~~~~~~~~~~~~~~~--~~~gvQfHPE~~-~~~ 186 (200)
T PRK13143 117 GWNTVKVV--KDCPLFEGID-GEYVYFVHSYYAY----PDDEDYVVATTDYGIEFPAAVCND--NVFGTQFHPEKS-GET 186 (200)
T ss_pred cceEEEEc--CCChhhccCC-CcEEEEEeeeeeC----CCCcceEEEEEcCCCEEEEEEEcC--CEEEEeCCCccc-hHH
Confidence 33334333 4677888884 4457789999886 34668899999875 445555443 599999999995 568
Q ss_pred hHHHHHHHHHHHH
Q 030626 153 GKTIVRNFIKMIV 165 (174)
Q Consensus 153 ~~~l~~~f~~~~~ 165 (174)
+.+||++|++.+.
T Consensus 187 g~~i~~~f~~~~~ 199 (200)
T PRK13143 187 GLKILENFVELIK 199 (200)
T ss_pred HHHHHHHHHHHHh
Confidence 8999999998753
No 66
>TIGR01855 IMP_synth_hisH imidazole glycerol phosphate synthase, glutamine amidotransferase subunit. This model represents the glutamine amidotransferase subunit (or domain, in eukaryotic systems) of imidazole glycerol phosphate synthase. This subunit catalyzes step 5 of histidine biosynthesis from PRPP. The other subunit, the cyclase, catalyzes step 6.
Probab=99.92 E-value=9.1e-25 Score=161.86 Aligned_cols=138 Identities=24% Similarity=0.287 Sum_probs=95.2
Q ss_pred CCCEEEeCCCCCCCCCcchh-----HHHH-H-HcCCCCcEEeehHhHHHHHHH------------hCCeeccCCCc--cc
Q 030626 13 NPRGVLISPGPGAPQDSGIS-----LQTV-L-ELGPTVPLFGVCMGLQCIGEA------------FGGKIVRSPLG--VM 71 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~-----~~~i-~-~~~~~~PilGIC~G~Qll~~~------------~gg~v~~~~~~--~~ 71 (174)
++|+|||+| ++++.+.... .+.+ + .+..++|+||||+|+|+|+.+ +|+++.+.+.. .+
T Consensus 36 ~~d~lii~G-~~~~~~~~~~l~~~~~~~l~~~~~~~~~pvlGiC~G~Qll~~~~~~~~~~~glg~~~~~v~~~~~~~~~~ 114 (196)
T TIGR01855 36 LADKLILPG-VGAFGAAMARLRENGLDLFVELVVRLGKPVLGICLGMQLLFERSEEGGGVPGLGLIKGNVVKLEARKVPH 114 (196)
T ss_pred cCCEEEECC-CCCHHHHHHHHHHcCcHHHHHHHHhCCCCEEEECHHHHHhhhccccCCCCCCcceeeEEEEECCCCCCCc
Confidence 689999966 3443222111 2233 4 356789999999999999998 68888876421 12
Q ss_pred ccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCC-CceEEEeeCCCCceEEEecCCCCcCC
Q 030626 72 HGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQFHPESIIT 150 (174)
Q Consensus 72 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~~i~a~~~~~~~~~~g~QfHPE~~~~ 150 (174)
.+.. .+. ....+++|+++++.+.++.+|++.+.. ++ +. +++.+++ +..+++ .... ++||+|||||+. .
T Consensus 115 ~g~~-~~~--~~~~~~l~~~l~~~~~v~~~Hs~~v~~---~~-~~-~~a~~~~g~~~~~~-~~~~-~i~GvQFHPE~~-~ 183 (196)
T TIGR01855 115 MGWN-EVH--PVKESPLLNGIDEGAYFYFVHSYYAVC---EE-EA-VLAYADYGEKFPAA-VQKG-NIFGTQFHPEKS-G 183 (196)
T ss_pred ccCe-eee--eCCCChHHhCCCCCCEEEEECeeEecC---CC-Cc-EEEEEcCCcEEEEE-EecC-CEEEEECCCccC-c
Confidence 3332 222 234678999999999999999999975 33 44 5665655 444444 3333 499999999985 6
Q ss_pred CchHHHHHHHHH
Q 030626 151 TEGKTIVRNFIK 162 (174)
Q Consensus 151 ~~~~~l~~~f~~ 162 (174)
+.+..|++||++
T Consensus 184 ~~g~~ll~~f~~ 195 (196)
T TIGR01855 184 KTGLKLLENFLE 195 (196)
T ss_pred HhHHHHHHHHHh
Confidence 789999999986
No 67
>COG0504 PyrG CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.92 E-value=9.9e-25 Score=175.19 Aligned_cols=156 Identities=19% Similarity=0.268 Sum_probs=116.1
Q ss_pred CCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCc--cccc---ccceeEe-cc-----
Q 030626 14 PRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VMHG---KSSLVYY-DE----- 82 (174)
Q Consensus 14 ~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~--~~~~---~~~~~~~-~~----- 82 (174)
+|||+++||.|....+++....-+++.+++|+||||+|||+++..+..+|..+... .+.. ....+.. .+
T Consensus 344 ~dgIlVPGGFG~RG~eGkI~Ai~yAREn~iP~lGIClGmQ~aviE~ARnv~Gl~~AnS~Efdp~t~~pVv~l~~eq~~~~ 423 (533)
T COG0504 344 VDGILVPGGFGYRGVEGKIAAIRYARENNIPFLGICLGMQLAVIEFARNVLGLEGANSTEFDPDTKYPVVDLMPEQKDVV 423 (533)
T ss_pred CCEEEeCCCCCcCchHHHHHHHHHHHhcCCCEEEEchhHHHHHHHHHHHhcCCccCcccccCCCCCCceEEeccccccCC
Confidence 89999999999988889887777788999999999999999998777655554311 0110 1111110 00
Q ss_pred --------------CCCCCcccCCC--Cceeecccccceeccc---CCCCCCcEEEEEcCC-CceEEEeeCCCCceEEEe
Q 030626 83 --------------KGEDGLLAGLS--NPFTAGRYHSLVIEKE---SFPSDALEVTAWTED-GLIMAARHKKYKHLQGVQ 142 (174)
Q Consensus 83 --------------~~~~~l~~~~~--~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~-~~i~a~~~~~~~~~~g~Q 142 (174)
....++...+. +.....+.|.|.++++ .+...|+++.++|.| ..++.+|..++|+++|+|
T Consensus 424 ~lGGTmRLG~y~~~l~~gT~a~~lY~~~~v~ERHRHRYEvN~~y~~~le~~Gl~~sg~s~d~~lvEivE~~~hpfFv~~Q 503 (533)
T COG0504 424 DLGGTMRLGAYPCRLKPGTLAAKLYGKDEIYERHRHRYEVNNDYRDQLEKAGLVFSGTSPDGGLVEIVELPDHPFFVATQ 503 (533)
T ss_pred cCCceeeccceeeecCCCcHHHHHhCCCeeeeeccchhhcCHHHHHHHHhCCeEEEEEcCCCCeEEEEEcCCCceEEEEc
Confidence 01222333332 3566678889999764 456689999999987 469999999999999999
Q ss_pred cCCCCcCCC-chHHHHHHHHHHHHHHHH
Q 030626 143 FHPESIITT-EGKTIVRNFIKMIVRKEA 169 (174)
Q Consensus 143 fHPE~~~~~-~~~~l~~~f~~~~~~~~~ 169 (174)
||||+.+.+ ++.++|..|++++.+...
T Consensus 504 fHPEf~SrP~~phPlf~~fv~Aa~~~~~ 531 (533)
T COG0504 504 FHPEFKSRPLRPHPLFVGFVKAALEYKK 531 (533)
T ss_pred ccccccCCCCCCCccHHHHHHHHHHhhc
Confidence 999999887 678999999999887654
No 68
>cd01749 GATase1_PB Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine Amidotransferase (GATase_I) involved in pyridoxine biosynthesis. Glutamine amidotransferase (GATase) activity involves the removal of the ammonia group from a glutamate molecule and its subsequent transfer to a specific substrate, thus creating a new carbon-nitrogen group on the substrate. This group contains proteins like Bacillus subtilus YaaE and Plasmodium falciparum Pdx2 which are members of the triad glutamine aminotransferase family and function in a pathway for the biosynthesis of vitamin B6.
Probab=99.89 E-value=3.5e-23 Score=151.79 Aligned_cols=131 Identities=25% Similarity=0.389 Sum_probs=91.8
Q ss_pred CCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHhCC------------eeccCCCccccccc
Q 030626 13 NPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGG------------KIVRSPLGVMHGKS 75 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg------------~v~~~~~~~~~~~~ 75 (174)
++|+||++||+.+..+. ..+.+.+++ ...++|+||||+|+|+|+.++++ ++.++..++..+..
T Consensus 35 ~~dgiii~Gg~~~~~~~~~~~~~~~~~i~~~~~~g~PvlGiC~G~qlL~~~~~~~~~~~glG~~~~~v~~~~~g~~~g~~ 114 (183)
T cd01749 35 GIDGLIIPGGESTTIGKLLRRTGLLDPLREFIRAGKPVFGTCAGLILLAKEVEDQGGQPLLGLLDITVRRNAFGRQVDSF 114 (183)
T ss_pred cCCEEEECCchHHHHHHHHHhCCHHHHHHHHHHcCCeEEEECHHHHHHHHHhcccCCCCccCceeEEEEeeccccccceE
Confidence 68999999998755432 123344554 56789999999999999999998 55554433322211
Q ss_pred ceeEeccCCCCCcccCC-CCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchH
Q 030626 76 SLVYYDEKGEDGLLAGL-SNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGK 154 (174)
Q Consensus 76 ~~~~~~~~~~~~l~~~~-~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~ 154 (174)
. ....+.++ ++.+.++++|.+.+.. ++++++++|.++++. ++++.. ++||+|||||.. ...
T Consensus 115 ~--------~~l~~~~~~~~~~~~~~~h~~~v~~---~p~~~~~la~~~~~~-~a~~~~---~~~g~qfHPE~~---~~~ 176 (183)
T cd01749 115 E--------ADLDIPGLGLGPFPAVFIRAPVIEE---VGPGVEVLAEYDGKI-VAVRQG---NVLATSFHPELT---DDT 176 (183)
T ss_pred E--------EcCCCCcCCCCccEEEEEECcEEEE---cCCCcEEEEecCCEE-EEEEEC---CEEEEEcCCccC---CCc
Confidence 0 01123333 3678899999999976 778999999997655 477654 499999999985 335
Q ss_pred HHHHHHH
Q 030626 155 TIVRNFI 161 (174)
Q Consensus 155 ~l~~~f~ 161 (174)
++++.|+
T Consensus 177 ~~~~~f~ 183 (183)
T cd01749 177 RIHEYFL 183 (183)
T ss_pred chhhhhC
Confidence 7777774
No 69
>PRK05368 homoserine O-succinyltransferase; Provisional
Probab=99.89 E-value=3.6e-22 Score=155.27 Aligned_cols=153 Identities=16% Similarity=0.171 Sum_probs=111.8
Q ss_pred HHHHHhcCCCEEEeCCCCCC--CCCcch-h--HHHHHH--cCCCCcEEeehHhHHHHHHHhCCeeccCCCccccccccee
Q 030626 6 LVSYCRKNPRGVLISPGPGA--PQDSGI-S--LQTVLE--LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLV 78 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~--~~~~~~-~--~~~i~~--~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~ 78 (174)
++++...++||+||+|+|.. .++... | +..+.+ ....+|+||||+|+|+++.++||...........|.....
T Consensus 92 ~~~i~~~~~DG~IITGAp~e~~~fedv~YW~El~~i~~w~~~~~~s~LgICwGaQa~a~algGi~k~~~~~K~~Gv~~~~ 171 (302)
T PRK05368 92 FEDIKDEKFDGLIITGAPVEQLPFEDVDYWDELKEILDWAKTHVTSTLFICWAAQAALYHLYGIPKYTLPEKLSGVFEHR 171 (302)
T ss_pred HHHhccCCCCEEEEcCCCCCCccCCCCchHHHHHHHHHHHHHcCCCEEEEcHHHHHHHHHcCCCccCCCCCceeEEEEEE
Confidence 45677778999999999988 555544 3 233332 3457999999999999999999973322222345544332
Q ss_pred EeccCCCCCcccCCCCceeecccccceecccCC-CCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHH
Q 030626 79 YYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIV 157 (174)
Q Consensus 79 ~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~ 157 (174)
.. ...+++++++++.+.+.++|...|..+.+ .+++++++|.|+.+.++++..++. .++++|+|||+ +...|.
T Consensus 172 ~~--~~~~pL~~g~~d~F~~phSr~~~V~~~~i~~~~~l~vLA~S~~~gv~~~~~~~~-r~~~vQgHPEY----d~~tL~ 244 (302)
T PRK05368 172 VL--DPHHPLLRGFDDSFLVPHSRYTEVREEDIRAATGLEILAESEEAGVYLFASKDK-REVFVTGHPEY----DADTLA 244 (302)
T ss_pred Ec--CCCChhhcCCCCccccceeehhhccHHHhccCCCCEEEecCCCCCeEEEEeCCC-CEEEEECCCCC----CHHHHH
Confidence 22 23779999999999999999888854322 558999999999999999988665 49999999999 455566
Q ss_pred HHHHHHHH
Q 030626 158 RNFIKMIV 165 (174)
Q Consensus 158 ~~f~~~~~ 165 (174)
+.+.+.+.
T Consensus 245 ~EY~RD~~ 252 (302)
T PRK05368 245 QEYFRDLG 252 (302)
T ss_pred HHHHHHHh
Confidence 66665544
No 70
>TIGR03800 PLP_synth_Pdx2 pyridoxal 5'-phosphate synthase, glutaminase subunit Pdx2. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes Pdx2, the glutaminase subunit of the PLP synthase.
Probab=99.88 E-value=1.8e-22 Score=147.91 Aligned_cols=132 Identities=19% Similarity=0.296 Sum_probs=89.8
Q ss_pred CCCEEEeCCCCCCCCC----cchhHHHHHH-cCCCCcEEeehHhHHHHHHHhC-----------CeeccCCCcccccccc
Q 030626 13 NPRGVLISPGPGAPQD----SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG-----------GKIVRSPLGVMHGKSS 76 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~----~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g-----------g~v~~~~~~~~~~~~~ 76 (174)
++|+|||+||+++..+ ...+...+++ ...++|+||||+|+|+|+.++. +++.++..+...+...
T Consensus 36 ~~d~liipGG~~~~~~~l~~~~~l~~~i~~~~~~g~pilGIC~G~qlL~~~~~~~~~~~lg~~~~~v~~~~~g~~~~s~~ 115 (184)
T TIGR03800 36 EIDGLIIPGGESTTLSRLLDKYGMFEPLRNFILSGLPVFGTCAGLIMLAKEIIGQKEGYLGLLDMTVERNAYGRQVDSFE 115 (184)
T ss_pred cCCEEEECCCCHHHHHHHHHhccHHHHHHHHHHcCCcEEEECHHHHHHHhhhccCCCCccCcEEEEEEeeccCCccccEE
Confidence 6899999999776522 2234455554 5678999999999999999973 4555544333222222
Q ss_pred eeEeccCCCCCcccCCC-CceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHH
Q 030626 77 LVYYDEKGEDGLLAGLS-NPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKT 155 (174)
Q Consensus 77 ~~~~~~~~~~~l~~~~~-~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~ 155 (174)
..... ..+. +.+...+.|.+.+.. ++++++++|+++++ +.|++.. ++||+|||||+. ...+
T Consensus 116 ~~l~~--------~~~~~~~~~~~~~h~~~v~~---lp~~~~vla~~~~~-~~a~~~~---~~~gvQfHPE~~---~~~~ 177 (184)
T TIGR03800 116 AEVDI--------KGVGDDPITGVFIRAPKIVS---VGNGVEILAKVGNR-IVAVRQG---NILVSSFHPELT---DDHR 177 (184)
T ss_pred EEeec--------ccCCCCcceEEEEcCCCccc---CCCCeEEEEEeCCe-eEEEEeC---CEEEEEeCCccC---CCch
Confidence 11111 1111 235666899999987 78999999998764 4677543 499999999985 3348
Q ss_pred HHHHHHH
Q 030626 156 IVRNFIK 162 (174)
Q Consensus 156 l~~~f~~ 162 (174)
+++.|++
T Consensus 178 ~~~~f~~ 184 (184)
T TIGR03800 178 VHEYFLE 184 (184)
T ss_pred HHHHhhC
Confidence 8888873
No 71
>PRK13142 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=99.87 E-value=8.9e-22 Score=144.35 Aligned_cols=137 Identities=21% Similarity=0.219 Sum_probs=82.6
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcch------hHHHHHHcCCCCcEEeehHhHHHHHHHh--C---------CeeccCCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGI------SLQTVLELGPTVPLFGVCMGLQCIGEAF--G---------GKIVRSPL 68 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~------~~~~i~~~~~~~PilGIC~G~Qll~~~~--g---------g~v~~~~~ 68 (174)
.+++. ++|+||+||+ +++.+... +.+.+++ ..++|+||||+|||+|+... | ++|.+.+.
T Consensus 32 ~~~l~--~~D~lIlPG~-g~~~~~~~~L~~~gl~~~i~~-~~g~PvlGIClGmQlL~~~~~eg~~~GLgll~~~V~rf~~ 107 (192)
T PRK13142 32 SKIID--QAETIILPGV-GHFKDAMSEIKRLNLNAILAK-NTDKKMIGICLGMQLMYEHSDEGDASGLGFIPGNISRIQT 107 (192)
T ss_pred HHHhc--cCCEEEECCC-CCHHHHHHHHHHCCcHHHHHH-hCCCeEEEECHHHHHHhhhcccCCcCccCceeEEEEECCC
Confidence 34553 5899977654 55433322 3344555 56899999999999999875 1 33333321
Q ss_pred c--ccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCC
Q 030626 69 G--VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPE 146 (174)
Q Consensus 69 ~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE 146 (174)
. .+|..|+.+.. ..++++ ..+++.|++.+. .......++.-....+.+++.. +++|+|||||
T Consensus 108 ~~~vph~GWn~~~~----~~~l~~-----~~~yFVhSy~v~----~~~~v~~~~~yg~~~~~~v~~~---n~~g~QFHPE 171 (192)
T PRK13142 108 EYPVPHLGWNNLVS----KHPMLN-----QDVYFVHSYQAP----MSENVIAYAQYGADIPAIVQFN---NYIGIQFHPE 171 (192)
T ss_pred CCCCCcccccccCC----CCcccc-----cEEEEECCCeEC----CCCCEEEEEECCCeEEEEEEcC---CEEEEecCcc
Confidence 1 12333332211 233332 357999999983 2233333333222234555432 5999999999
Q ss_pred CcCCCchHHHHHHHHHH
Q 030626 147 SIITTEGKTIVRNFIKM 163 (174)
Q Consensus 147 ~~~~~~~~~l~~~f~~~ 163 (174)
+ +...|.+|++||++-
T Consensus 172 k-S~~~G~~ll~nf~~~ 187 (192)
T PRK13142 172 K-SGTYGLQILRQAIQG 187 (192)
T ss_pred c-CcHhHHHHHHHHHhc
Confidence 9 678999999999864
No 72
>PLN02617 imidazole glycerol phosphate synthase hisHF
Probab=99.87 E-value=1.6e-21 Score=162.38 Aligned_cols=146 Identities=24% Similarity=0.280 Sum_probs=99.2
Q ss_pred CCCEEEeCCCCCCCCCcc------hhHHHHHH-cCCCCcEEeehHhHHHHHHHh---------C---CeeccCCC----c
Q 030626 13 NPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF---------G---GKIVRSPL----G 69 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~~~PilGIC~G~Qll~~~~---------g---g~v~~~~~----~ 69 (174)
++|+|||+|+ +++.... .+.+.+++ +..++|+||||+|||+|+.++ | |++.+... .
T Consensus 44 ~~D~lIlpG~-gs~~~~m~~L~~~gl~~~i~~~i~~g~PvLGIC~G~QlLa~~~~E~g~~~glg~l~G~v~~~~~~~~~~ 122 (538)
T PLN02617 44 NADRLIFPGV-GAFGSAMDVLNNRGMAEALREYIQNDRPFLGICLGLQLLFESSEENGPVEGLGVIPGVVGRFDSSNGLR 122 (538)
T ss_pred cCCEEEECCC-CCHHHHHHHHHHcCHHHHHHHHHHcCCCEEEECHHHHHHhhhhhhcCCccCcccccceEEECCccCCCC
Confidence 6899999764 4433211 13344554 567899999999999999873 2 56655431 1
Q ss_pred ccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcC--CCceEEEeeCCCCceEEEecCCCC
Q 030626 70 VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE--DGLIMAARHKKYKHLQGVQFHPES 147 (174)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~--~~~i~a~~~~~~~~~~g~QfHPE~ 147 (174)
..+..|..+... .++++|.+++ ...++++|+|.+.. ++.....++++++ ++.+++++.. ++||+|||||+
T Consensus 123 vp~iGw~~V~~~--~~spL~~~l~-~~~vy~vHSy~v~~--~p~~~~~v~a~~~~g~~~IaAI~~g---nI~GVQFHPE~ 194 (538)
T PLN02617 123 VPHIGWNALQIT--KDSELLDGVG-GRHVYFVHSYRATP--SDENKDWVLATCNYGGEFIASVRKG---NVHAVQFHPEK 194 (538)
T ss_pred CCeecceEEEec--CCChhHhcCC-CcEEEEEeEEEEEe--cCCCCcEEEEEEccCCCcEEEEEeC---CEEEEEcCCcc
Confidence 223445555433 4678998885 45688999998754 1323344555554 4578999864 49999999999
Q ss_pred cCCCchHHHHHHHHHHHHHHH
Q 030626 148 IITTEGKTIVRNFIKMIVRKE 168 (174)
Q Consensus 148 ~~~~~~~~l~~~f~~~~~~~~ 168 (174)
+ .+.|.+||++|++.+.+..
T Consensus 195 s-~~~G~~L~~nFl~~~~~~~ 214 (538)
T PLN02617 195 S-GATGLSILRRFLEPKSSAT 214 (538)
T ss_pred C-chhHHHHHHHHHHhhhhhh
Confidence 5 4788999999999877543
No 73
>KOG1224 consensus Para-aminobenzoate (PABA) synthase ABZ1 [Translation, ribosomal structure and biogenesis]
Probab=99.87 E-value=1.2e-21 Score=158.33 Aligned_cols=149 Identities=30% Similarity=0.558 Sum_probs=110.0
Q ss_pred CCCEEEeCCCCCCCCCc--chhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccC-CCCCcc
Q 030626 13 NPRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEK-GEDGLL 89 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~--~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~-~~~~l~ 89 (174)
-+|+||+++|||+|.-. ......+....+.+||||||+|||.|+.+-|+.|.... ...||....+.+... .-+.++
T Consensus 64 ~FDaIVVgPGPG~P~~a~d~gI~~rl~~~~~~iPilGICLGfQal~l~hGA~v~~~n-~p~HGrvs~i~~~~~~~f~gi~ 142 (767)
T KOG1224|consen 64 AFDAIVVGPGPGSPMCAADIGICLRLLLECRDIPILGICLGFQALGLVHGAHVVHAN-EPVHGRVSGIEHDGNILFSGIP 142 (767)
T ss_pred ccceEEecCCCCCCCcHHHHHHHHHHHHhcCCCceeeeehhhHhHhhhcccceecCC-CcccceeeeEEecCcEEEccCC
Confidence 48999999999999422 22344455556689999999999999999999998544 455777665554311 123334
Q ss_pred cCCCCceeecccccceecccCCCCCCcEEEEEcCC-C--ceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626 90 AGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTED-G--LIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 165 (174)
Q Consensus 90 ~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~-~--~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 165 (174)
.+-+..+.+.-+|+..+++ ++-+-+.+++++.| . .++++.+++.| -||+|||||...++.|.+||+||++...
T Consensus 143 sg~~~~fK~~RYHSL~in~--~pid~l~il~t~~ddng~ilMsi~~~~fP-hfG~qyHPES~~s~~g~~lfkNFl~lt~ 218 (767)
T KOG1224|consen 143 SGRNSDFKVVRYHSLIINS--LPIDLLPILWTIYDDNGHILMSIMHSSFP-HFGLQYHPESIASTYGSQLFKNFLDLTV 218 (767)
T ss_pred CCCcccceeEEeEEEEecC--CchhhhcceeEeecCCceEEEEeeccCCC-ccceeeChHHhhhhhhHHHHHHHHHhhc
Confidence 4444678888999999886 34345566666533 2 47788888887 7999999999888999999999998754
No 74
>TIGR01737 FGAM_synth_I phosphoribosylformylglycinamidine synthase I. In some species, phosphoribosylformylglycinamidine synthase is composed of a single polypeptide chain. This model describes the PurQ protein of Bacillus subtilis (where PurL, PurQ, and PurS are required for phosphoribosylformylglycinamidine synthase activity) and functionally equivalent proteins from other bacteria and archaea.
Probab=99.86 E-value=2.7e-21 Score=146.21 Aligned_cols=148 Identities=18% Similarity=0.227 Sum_probs=95.3
Q ss_pred CCCEEEeCCCCCCCCC--------cchhHHHHHH-cCCCCcEEeehHhHHHHHHH--hCCeeccCCCcccccc-cceeEe
Q 030626 13 NPRGVLISPGPGAPQD--------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGK-SSLVYY 80 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~--------~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~--~gg~v~~~~~~~~~~~-~~~~~~ 80 (174)
++|+|||+||+..... .....+.+++ ...++|++|||.|+|+|+.+ ++|++.+.... .++. |..+..
T Consensus 40 ~~d~lilpGG~~~~d~~~~~~~~~~~~~~~~l~~~~~~g~pvlgIC~G~QlLa~~GlL~G~l~~n~~~-~~~~~~~~~~v 118 (227)
T TIGR01737 40 DYDGVVLPGGFSYGDYLRAGAIAAASPIMQEVREFAEKGVPVLGICNGFQILVEAGLLPGALLPNDSL-RFICRWVYLRV 118 (227)
T ss_pred CCCEEEECCCCcccccccccchhcchHHHHHHHHHHHcCCEEEEECHHHHHHHHcCCCCCceeecCCC-ceEEEeEEEEE
Confidence 6899999999753211 1123344544 56789999999999999996 88988887643 2322 333333
Q ss_pred ccCCCCCcccCCCCc--eeecccccce---eccc---CCCCCCcEEEEEc-----------CC---CceEEEeeCCCCce
Q 030626 81 DEKGEDGLLAGLSNP--FTAGRYHSLV---IEKE---SFPSDALEVTAWT-----------ED---GLIMAARHKKYKHL 138 (174)
Q Consensus 81 ~~~~~~~l~~~~~~~--~~~~~~H~~~---v~~~---~l~~~~~~~~a~s-----------~~---~~i~a~~~~~~~~~ 138 (174)
. ..+++++++++.. +.....|.++ ++++ .+...+..++.+. ++ ..|+++++++++ +
T Consensus 119 ~-~~~~~~~~~~~~g~~~~~pi~H~eG~y~~~~~~l~~l~~~~~i~~~y~d~~g~~~~~~npngs~~~i~~i~~~~~~-~ 196 (227)
T TIGR01737 119 E-NADTIFTKNYKKGEVIRIPIAHGEGRYYADDETLARLESNDQVVFRYCDEDGDVAEEANPNGSVGNIAGIVNERGN-V 196 (227)
T ss_pred C-CCCChhhccCCCCCEEEEEeEcCCcCeEcCHHHHHHHHHCCcEEEEEECCCCCCCCCCCCCCCHHHHcccCCCCCC-E
Confidence 2 3456788888742 2222255443 3321 1222233233332 22 348899999876 9
Q ss_pred EEEecCCCCc-----CCCchHHHHHHHHHH
Q 030626 139 QGVQFHPESI-----ITTEGKTIVRNFIKM 163 (174)
Q Consensus 139 ~g~QfHPE~~-----~~~~~~~l~~~f~~~ 163 (174)
+|+|||||+. .+++|..||+||++.
T Consensus 197 ~g~~~HpE~~~~~~~~~~~g~~~~~~~~~~ 226 (227)
T TIGR01737 197 LGMMPHPERASEKLLGGDDGLKLFESLVEW 226 (227)
T ss_pred EEEecCchhhcccccCCcccHHHHHHHHhh
Confidence 9999999997 467999999999864
No 75
>KOG2387 consensus CTP synthase (UTP-ammonia lyase) [Nucleotide transport and metabolism]
Probab=99.84 E-value=5.4e-21 Score=151.70 Aligned_cols=168 Identities=18% Similarity=0.285 Sum_probs=116.7
Q ss_pred CchHHHHHHhc-CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccCCCc--ccc---ccc
Q 030626 2 SVNYLVSYCRK-NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRSPLG--VMH---GKS 75 (174)
Q Consensus 2 ~~~~~~~~~~~-~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~--~~~---~~~ 75 (174)
+.+|.++|..+ ..|||+++||.|+..-.+...+.-+++.+++|+||||+|||+.+..|..++...... .++ ...
T Consensus 351 ~~~~~~aW~~l~~adGilvPGGFG~RGveG~i~Aak~ARen~iP~LGiCLGmQ~AvIEfaRnvLg~~dAnStEF~p~~~~ 430 (585)
T KOG2387|consen 351 PRKYHAAWQKLKSADGILVPGGFGDRGVEGKILAAKWARENKIPFLGICLGMQLAVIEFARNVLGLKDANSTEFDPETKN 430 (585)
T ss_pred hhHHHHHHHHhccCCeEEeCCcccccchhHHHHHHHHHHhcCCCeEeeehhhhHHHHHHHHHhhCCCCCCccccCCCCCC
Confidence 45788888776 499999999999999999988888888999999999999999998777655544311 000 000
Q ss_pred ceeEe-ccC-------------------CCCCcccCCC---Cceeecccccceeccc---CCCCCCcEEEEEcCCCc-eE
Q 030626 76 SLVYY-DEK-------------------GEDGLLAGLS---NPFTAGRYHSLVIEKE---SFPSDALEVTAWTEDGL-IM 128 (174)
Q Consensus 76 ~~~~~-~~~-------------------~~~~l~~~~~---~~~~~~~~H~~~v~~~---~l~~~~~~~~a~s~~~~-i~ 128 (174)
..+.. ++. .+++..+.+. +...-.+.|.|.|+++ .+...|+..++.+.++. .+
T Consensus 431 ~vVi~MPE~~~~~mGgtMRLG~R~t~f~~~~s~~~kLYG~~~~V~ERHRHRyEVNP~~v~~le~~Gl~FvGkd~~g~rme 510 (585)
T KOG2387|consen 431 PVVIFMPEHNKTHMGGTMRLGSRRTVFQDKDSKLRKLYGNVEFVDERHRHRYEVNPEMVKQLEQAGLSFVGKDVTGKRME 510 (585)
T ss_pred cEEEECcCCCcccccceeeecccceeeecCchHHHHHhCCchhhhhhhhcceecCHHHHHHHHhcCcEEEeecCCCcEEE
Confidence 01110 100 0111112221 2234456788998875 35668999999998775 88
Q ss_pred EEeeCCCCceEEEecCCCCcCCCc-hHHHHHHHHHHHHHHHH
Q 030626 129 AARHKKYKHLQGVQFHPESIITTE-GKTIVRNFIKMIVRKEA 169 (174)
Q Consensus 129 a~~~~~~~~~~g~QfHPE~~~~~~-~~~l~~~f~~~~~~~~~ 169 (174)
.++.+++|+++|+|||||+.+.+. ..++|-..+.+...+..
T Consensus 511 I~El~~HP~fVg~QfHPE~~srp~kpsp~flGlv~as~~~l~ 552 (585)
T KOG2387|consen 511 IIELESHPFFVGVQFHPEFKSRPDKPSPLFLGLVAASCGRLD 552 (585)
T ss_pred EEEcCCCCceeeeccCHHHhcCCCCCCcchhHhHHHHHhhHH
Confidence 999999999999999999988764 45666666665554433
No 76
>KOG0370 consensus Multifunctional pyrimidine synthesis protein CAD (includes carbamoyl-phophate synthetase, aspartate transcarbamylase, and glutamine amidotransferase) [General function prediction only]
Probab=99.84 E-value=1.6e-20 Score=159.75 Aligned_cols=150 Identities=24% Similarity=0.443 Sum_probs=118.4
Q ss_pred HHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccCCCcccccccceeEeccCCCC
Q 030626 8 SYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKGED 86 (174)
Q Consensus 8 ~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~~~ 86 (174)
.+...+||||++++|||+|.-.......+++ +..++|++|||+|||+|+.+.|++..+++.+. +|...+......
T Consensus 205 ~i~~~~yDGlflSNGPGdPe~~~~~v~~vr~lL~~~~PvfGIClGHQllA~AaGakT~KmKyGN-RGhNiP~~~~~t--- 280 (1435)
T KOG0370|consen 205 PIAKEEYDGLFLSNGPGDPELCPLLVQNVRELLESNVPVFGICLGHQLLALAAGAKTYKMKYGN-RGHNIPCTCRAT--- 280 (1435)
T ss_pred cccccccceEEEeCCCCCchhhHHHHHHHHHHHhCCCCeEEEehhhHHHHHhhCCceEEeeccc-cCCCccceeccC---
Confidence 3455689999999999999888777666666 44469999999999999999999999998652 455444433211
Q ss_pred CcccCCCCceeecccccceecccCCCCCCcEEEEEc-CCCceEEEeeCCCCceEEEecCCCCcCCC-chHHHHHHHHHHH
Q 030626 87 GLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWT-EDGLIMAARHKKYKHLQGVQFHPESIITT-EGKTIVRNFIKMI 164 (174)
Q Consensus 87 ~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s-~~~~i~a~~~~~~~~~~g~QfHPE~~~~~-~~~~l~~~f~~~~ 164 (174)
..-+...++|+|.++.+.|+ .+++.+-.+ +|+.-+++.+...| ++.+|||||...++ +..-+|..|++.+
T Consensus 281 ------Grc~ITSQNHGYAVD~~tLp-~gWk~lFvN~NDgSNEGI~Hss~P-~fSvQFHPEat~GP~DTeyLFDiFi~lv 352 (1435)
T KOG0370|consen 281 ------GRCFITSQNHGYAVDPATLP-AGWKPLFVNANDGSNEGIMHSSKP-FFSVQFHPEATPGPHDTEYLFDVFIELV 352 (1435)
T ss_pred ------ceEEEEecCCceeecccccc-CCCchheeecccCCCceEecCCCC-ceeeecCCcCCCCCcchHHHHHHHHHHH
Confidence 13366789999999987766 788877766 67889999999877 99999999998776 5678999999987
Q ss_pred HHHHH
Q 030626 165 VRKEA 169 (174)
Q Consensus 165 ~~~~~ 169 (174)
.+...
T Consensus 353 kk~ks 357 (1435)
T KOG0370|consen 353 KKSKS 357 (1435)
T ss_pred HHHhc
Confidence 76543
No 77
>PRK03619 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.82 E-value=1.6e-19 Score=135.76 Aligned_cols=148 Identities=18% Similarity=0.299 Sum_probs=98.5
Q ss_pred CCCEEEeCCCCCCCCC--------cchhHHHHHH-cCCCCcEEeehHhHHHHHHH--hCCeeccCCCcccccccceeEec
Q 030626 13 NPRGVLISPGPGAPQD--------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGKSSLVYYD 81 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~--------~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~--~gg~v~~~~~~~~~~~~~~~~~~ 81 (174)
++|+|||+||+..... ...+.+.+++ ..+++|++|||.|+|+|+.+ ++|++.++........|..+.+.
T Consensus 41 ~~D~lvipGG~~~~d~l~~~~~~~~~~~~~~l~~~~~~g~~ilgIC~G~qlLa~~GLL~g~l~~n~~~~~~~~~v~v~i~ 120 (219)
T PRK03619 41 GVDAVVLPGGFSYGDYLRCGAIAAFSPIMKAVKEFAEKGKPVLGICNGFQILTEAGLLPGALTRNASLKFICRDVHLRVE 120 (219)
T ss_pred CCCEEEECCCCchhhhhccchhhhchHHHHHHHHHHHCCCEEEEECHHHHHHHHcCCCCCeEEEcCCCcEEEEEEEEEEC
Confidence 6899999999753211 1223344544 56789999999999999997 99999888754332334344433
Q ss_pred cCCCCCcccCCCC--ceeeccccc---ceeccc---CCCCCCcEEEEEc---CCC---ceEEEeeCCCCceEEEecCCCC
Q 030626 82 EKGEDGLLAGLSN--PFTAGRYHS---LVIEKE---SFPSDALEVTAWT---EDG---LIMAARHKKYKHLQGVQFHPES 147 (174)
Q Consensus 82 ~~~~~~l~~~~~~--~~~~~~~H~---~~v~~~---~l~~~~~~~~a~s---~~~---~i~a~~~~~~~~~~g~QfHPE~ 147 (174)
..++++++.+.. .+.+...|+ |.++.+ .+...++.++.++ +++ .|+++..++ ++++|+|||||+
T Consensus 121 -~~~~~~~~~~~~g~~~~~~~aH~~~r~~~~~~~~~~l~~~~~~~~~~~~~npngs~~~ia~i~~~~-~~~~g~~~HPE~ 198 (219)
T PRK03619 121 -NNDTPFTSGYEKGEVIRIPIAHGEGNYYADEETLKRLEGNGQVVFRYCDENPNGSVNDIAGIVNEK-GNVLGMMPHPER 198 (219)
T ss_pred -CCCChhhcCCCCCCEEEEEEEcCcccEEECHHHHHHHHhCCcEEEEEcCCCCCCCHHHhcccCCCC-CCEEEEeCCCCc
Confidence 346788887742 233434554 334321 2445677766665 555 367776654 469999999999
Q ss_pred cCC-----CchHHHHHHHHH
Q 030626 148 IIT-----TEGKTIVRNFIK 162 (174)
Q Consensus 148 ~~~-----~~~~~l~~~f~~ 162 (174)
.+. .++.+||++|++
T Consensus 199 ~~~~~~~~~~g~~lf~~~v~ 218 (219)
T PRK03619 199 AVEPLLGSTDGLKLFESLLK 218 (219)
T ss_pred cccCccCCCcCHHHHHHHhh
Confidence 865 489999999985
No 78
>PLN02832 glutamine amidotransferase subunit of pyridoxal 5'-phosphate synthase complex
Probab=99.76 E-value=4.6e-18 Score=129.00 Aligned_cols=53 Identities=19% Similarity=0.311 Sum_probs=36.8
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 59 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~ 59 (174)
..+++. ++|+|||+||....... ..+.+.|++ ...++|+||||.|||+|+...
T Consensus 32 ~~~~L~--~~DgLILPGGfs~~~~~L~~~~gl~~~I~~~v~~g~PvLGiC~GmqlLa~~~ 89 (248)
T PLN02832 32 KPEQLE--GVSGLIIPGGESTTMAKLAERHNLFPALREFVKSGKPVWGTCAGLIFLAERA 89 (248)
T ss_pred CHHHhc--cCCEEEeCCCHHHHHHHHHhhcchHHHHHHHHHcCCCEEEEChhHHHHHHHh
Confidence 345553 68999999976543211 123344554 457899999999999999875
No 79
>PRK13526 glutamine amidotransferase subunit PdxT; Provisional
Probab=99.69 E-value=2.5e-16 Score=113.92 Aligned_cols=137 Identities=12% Similarity=0.203 Sum_probs=90.2
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCC----CCcchhHHHHHHcCCCCcEEeehHhHHHHHHH---hC---CeeccCCCccccc
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAP----QDSGISLQTVLELGPTVPLFGVCMGLQCIGEA---FG---GKIVRSPLGVMHG 73 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~----~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~---~g---g~v~~~~~~~~~~ 73 (174)
+..+++. ++|+||||||.+.. .....+.+.+++...++|++|||.|+|+|+.. +| ++|.++.++....
T Consensus 32 ~~~~~l~--~~D~LILPGG~~t~~~~ll~~~~l~~~Ik~~~~~kpilGICaG~qlL~~~s~~Lg~idg~V~Rn~~Grq~~ 109 (179)
T PRK13526 32 KFNNDFD--SIDRLVIPGGESTTLLNLLNKHQIFDKLYNFCSSKPVFGTCAGSIILSKGEGYLNLLDLEVQRNAYGRQVD 109 (179)
T ss_pred CCHHHHh--CCCEEEECCChHHHHHHHhhhcCcHHHHHHHHcCCcEEEEcHHHHHHHccCCCCCCccEEEEEcCCCCccc
Confidence 3455553 68999999986643 11223456666533468999999999999983 33 6777776554332
Q ss_pred ccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCch
Q 030626 74 KSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEG 153 (174)
Q Consensus 74 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~ 153 (174)
.+..... +.++ .+...+...-.+.+ ..++.+++|+-++ .+-+++.. +++++-||||.+ +.
T Consensus 110 sf~~~~~--------~~~~--~~~~vFiRAP~i~~---~~~~v~vla~~~~-~~v~v~q~---~~l~~~FHPElt---~d 169 (179)
T PRK13526 110 SFVADIS--------FNDK--NITGVFIRAPKFIV---VGNQVDILSKYQN-SPVLLRQA---NILVSSFHPELT---QD 169 (179)
T ss_pred eeeeecC--------cCCc--eEEEEEEcCceEeE---cCCCcEEEEEECC-EEEEEEEC---CEEEEEeCCccC---CC
Confidence 2211110 1111 36666666777766 5689999998864 55666655 499999999985 55
Q ss_pred HHHHHHHHH
Q 030626 154 KTIVRNFIK 162 (174)
Q Consensus 154 ~~l~~~f~~ 162 (174)
.++.+.|++
T Consensus 170 ~r~h~~f~~ 178 (179)
T PRK13526 170 PTVHEYFLA 178 (179)
T ss_pred chHHHHHhc
Confidence 688888875
No 80
>COG0047 PurL Phosphoribosylformylglycinamidine (FGAM) synthase, glutamine amidotransferase domain [Nucleotide transport and metabolism]
Probab=99.67 E-value=4.7e-16 Score=114.75 Aligned_cols=150 Identities=19% Similarity=0.295 Sum_probs=98.8
Q ss_pred CCCEEEeCCCCCCC--CCcc------hhHHHHHH-cCCCCcEEeehHhHHHHHHH--hCCeeccCCCcccccccceeEec
Q 030626 13 NPRGVLISPGPGAP--QDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGKSSLVYYD 81 (174)
Q Consensus 13 ~~dgiii~GG~~~~--~~~~------~~~~~i~~-~~~~~PilGIC~G~Qll~~~--~gg~v~~~~~~~~~~~~~~~~~~ 81 (174)
++|+||++||...- -..+ ..++.+++ ..+++|+||||.|+|+|.++ +.|.+.++........+..+.+.
T Consensus 43 ~~d~vv~pGGFSyGDyLr~Gaiaa~~~v~~~v~~~a~~g~~vLGICNGfQiL~e~gLlPGal~~N~s~~F~cr~v~l~V~ 122 (231)
T COG0047 43 DFDGVVLPGGFSYGDYLRAGAIAAIAPVMDEVREFAEKGKPVLGICNGFQILSEAGLLPGALTRNESLRFECRWVYLRVE 122 (231)
T ss_pred CccEEEEcCCCCcccccCcchHHhhHHHHHHHHHHHHCCCeEEEEcchhHHHHHcCcCCcceecCCCCceEEEEEEEEEe
Confidence 69999999996532 2222 23455554 56899999999999999964 67888888755444444444433
Q ss_pred cCCCCCcccCCC--Cceeecccccce---eccc---CCCCCCcEEEEEcC-----------CCc---eEEEeeCCCCceE
Q 030626 82 EKGEDGLLAGLS--NPFTAGRYHSLV---IEKE---SFPSDALEVTAWTE-----------DGL---IMAARHKKYKHLQ 139 (174)
Q Consensus 82 ~~~~~~l~~~~~--~~~~~~~~H~~~---v~~~---~l~~~~~~~~a~s~-----------~~~---i~a~~~~~~~~~~ 139 (174)
..++++++.+. +.+.+.-.|+.+ ++.+ .+..++..++-+.+ ++. |+++...+++ ++
T Consensus 123 -~~~t~ft~~~~~g~~i~ipVAHgEGr~~~~~~~l~~l~~ngqvvfrY~d~~G~~~~~~NPNGS~~~IaGI~n~~G~-V~ 200 (231)
T COG0047 123 -NNNTPFTSGYEGGEVIPIPVAHGEGRYYADDETLAELEENGQVVFRYVDNNGETEEYANPNGSVNGIAGITNEDGN-VL 200 (231)
T ss_pred -cCCCHHHHhcCCCceEEEEEeecceeEEccHHHHHHHhhCCeEEEEEecCCCceeeeeCCCCChhhceeEEcCCCC-EE
Confidence 34566666664 346666677643 2221 12233334443332 333 8999988875 99
Q ss_pred EEecCCCCcC-----CCchHHHHHHHHHHH
Q 030626 140 GVQFHPESII-----TTEGKTIVRNFIKMI 164 (174)
Q Consensus 140 g~QfHPE~~~-----~~~~~~l~~~f~~~~ 164 (174)
|++.||||.. +.++.+||++.++.+
T Consensus 201 gmMPHPERa~~~~~g~~Dg~~lF~s~~~~~ 230 (231)
T COG0047 201 GMMPHPERASESLLGGEDGLRLFRSARKYL 230 (231)
T ss_pred EecCCchhhhhcccCCchHHHHHHHHHHhh
Confidence 9999999964 357899999888764
No 81
>PRK01175 phosphoribosylformylglycinamidine synthase I; Provisional
Probab=99.65 E-value=1.8e-15 Score=116.26 Aligned_cols=151 Identities=19% Similarity=0.279 Sum_probs=93.5
Q ss_pred CCCEEEeCCCCCCCC--Ccch---------hHHHHHH-cCCCCcEEeehHhHHHHHHH--hCC----------eeccCCC
Q 030626 13 NPRGVLISPGPGAPQ--DSGI---------SLQTVLE-LGPTVPLFGVCMGLQCIGEA--FGG----------KIVRSPL 68 (174)
Q Consensus 13 ~~dgiii~GG~~~~~--~~~~---------~~~~i~~-~~~~~PilGIC~G~Qll~~~--~gg----------~v~~~~~ 68 (174)
++|+|||+||.+... ..+. ..+.+++ ..+++|+||||.|+|+|+.+ +.| .+.++..
T Consensus 48 ~~DgLvipGGfs~gD~l~~g~~~~~~l~~~l~~~Ik~f~~~gkpVLGICnG~QlLa~~GlLpg~~~~~~~~~~~L~~N~s 127 (261)
T PRK01175 48 DYDCLVIPGGFSAGDYIRAGAIFAARLKAVLRKDIEEFIDEGYPIIGICNGFQVLVELGLLPGFDEIAEKPEMALTVNES 127 (261)
T ss_pred hCCEEEECCCCCcccccccchhhHHHHHHHHHHHHHHHHHCCCeEEEECHHHHHHHHCCCCCCCCccccCCcceEeecCC
Confidence 589999999954221 2211 1133444 67889999999999999974 334 4555554
Q ss_pred cccccccceeEeccCCCCCcccCCCC-ceeecccccce--e--ccc---CCCCCCcEEEEEc------------CCC---
Q 030626 69 GVMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLV--I--EKE---SFPSDALEVTAWT------------EDG--- 125 (174)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~--v--~~~---~l~~~~~~~~a~s------------~~~--- 125 (174)
......|..+.+. ..+++++.++.. .+.+...|.++ + +.+ .|...+..++-+. +++
T Consensus 128 ~~f~~~~~~~~v~-~~~s~~~~~~~~~~~~~piah~eG~~~~~~~~~l~~l~~~~~i~~~Y~d~~g~~~~~p~NPNGs~~ 206 (261)
T PRK01175 128 NRFECRPTYLKKE-NRKCIFTKLLKKDVFQVPVAHAEGRVVFSEEEILERLIENDQIVFRYVDENGNYAGYPWNPNGSIY 206 (261)
T ss_pred CCeEEeeeEEEEC-CCCChhHhccCCCEEEEeeEcCCcceEeCCHHHHHHHHHCCcEEEEEeCCCCCCCCCCCCCCCChh
Confidence 4433444444443 246677766653 34445566543 1 111 2333444444442 223
Q ss_pred ceEEEeeCCCCceEEEecCCCCcCC-------------CchHHHHHHHHHHHH
Q 030626 126 LIMAARHKKYKHLQGVQFHPESIIT-------------TEGKTIVRNFIKMIV 165 (174)
Q Consensus 126 ~i~a~~~~~~~~~~g~QfHPE~~~~-------------~~~~~l~~~f~~~~~ 165 (174)
.|+++.+.+++ ++|++.||||... .+|..||+++++.+.
T Consensus 207 ~IAGi~~~~G~-vlglMpHPEr~~~~~~~~~~~~~~~~~~g~~~f~~~~~~~~ 258 (261)
T PRK01175 207 NIAGITNEKGN-VIGLMPHPERAFYGYQHPYWEKEEDYGDGKIFFDSLINYLR 258 (261)
T ss_pred hcceeECCCCC-EEEEcCCHHHhhchhhccccccccCCCchHHHHHHHHHHHH
Confidence 39999999875 9999999998532 278999999987553
No 82
>cd01740 GATase1_FGAR_AT Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase. Type 1 glutamine amidotransferase (GATase1)-like domain found in Formylglycinamide ribonucleotide amidotransferase (FGAR-AT). FGAR-AT catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to formylglycinamidine ribonucleotide (FGAM), ADP, Pi, and glutamate in the fourth step of the purine biosynthetic pathway. FGAR-AT is a glutamine amidotransferase. Glutamine amidotransferase activity catalyses the transfer of ammonia from the amide side chain of glutamine to an acceptor substrate. FGAR-AT belongs to the triad family of amidotransferases having a conserved Cys-His-Glu catalytic triad in the glutaminase active site
Probab=99.63 E-value=3.1e-15 Score=113.96 Aligned_cols=145 Identities=17% Similarity=0.233 Sum_probs=90.3
Q ss_pred CCCEEEeCCCCCCCCCc--------ch-hHHHHHH-cCCCCcEEeehHhHHHHHHH--hCCeeccCCCcccccc----cc
Q 030626 13 NPRGVLISPGPGAPQDS--------GI-SLQTVLE-LGPTVPLFGVCMGLQCIGEA--FGGKIVRSPLGVMHGK----SS 76 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~--------~~-~~~~i~~-~~~~~PilGIC~G~Qll~~~--~gg~v~~~~~~~~~~~----~~ 76 (174)
++|+|||+||+...... .. ..+.+++ ..+++|+||||.|+|+|+.+ +++++...+....... +.
T Consensus 43 ~~d~liipGG~~~~d~l~~~~~~~~~~~~~~~l~~~~~~g~pvlGIC~G~QlL~~~gll~g~~~~~~~~~~~~~~~~~~v 122 (238)
T cd01740 43 DYDGVVLPGGFSYGDYLRAGAIAAASPLLMEEVKEFAERGGLVLGICNGFQILVELGLLPGALIRNKGLKFICRWQNRFV 122 (238)
T ss_pred hCCEEEECCCCCcccccccccccccChhHHHHHHHHHhCCCeEEEECcHHHHHHHcCCCccccccCCCCceeccccCceE
Confidence 68999999997532211 11 3344544 56789999999999999997 8888877664332221 12
Q ss_pred eeEeccCCCCCcccC--CCCceeecccccce---eccc---CCCCCCcEEEEE-------------cCCC---ceEEEee
Q 030626 77 LVYYDEKGEDGLLAG--LSNPFTAGRYHSLV---IEKE---SFPSDALEVTAW-------------TEDG---LIMAARH 132 (174)
Q Consensus 77 ~~~~~~~~~~~l~~~--~~~~~~~~~~H~~~---v~~~---~l~~~~~~~~a~-------------s~~~---~i~a~~~ 132 (174)
.+.+ ...++.++.. ....+.++..|+++ .+.+ .+...+-.+ -+ ++++ .|+++.+
T Consensus 123 ~~~v-~~~~si~t~~~~~g~~l~~~vaHgeG~~~~~~~~~~~l~~~~~i~-~y~~~~~~~~~~yp~NPnGs~~~iAgi~~ 200 (238)
T cd01740 123 TLRV-ENNDSPFTKGYMEGEVLRIPVAHGEGRFYADDETLAELEENGQIA-QYVDDDGNVTERYPANPNGSLDGIAGICN 200 (238)
T ss_pred EEEE-cCCCCceecCCCCCCEEEEEeECCceeeEcCHHHHHHHHHCCCEE-EEEcCCCCccccCCCCCCCChhcceEEEc
Confidence 2322 2345667766 33567788888753 1111 111122222 11 2233 3999999
Q ss_pred CCCCceEEEecCCCCcCCC----------chHHHHHHH
Q 030626 133 KKYKHLQGVQFHPESIITT----------EGKTIVRNF 160 (174)
Q Consensus 133 ~~~~~~~g~QfHPE~~~~~----------~~~~l~~~f 160 (174)
.+++ ++|++.||||...+ ++..+|++.
T Consensus 201 ~~Gr-vlglMphPer~~~~~q~~~~~~~~~~~~~F~~~ 237 (238)
T cd01740 201 EDGR-VLGMMPHPERAVEPWQWERLLGGSDGLKLFRNA 237 (238)
T ss_pred CCCC-EEEEcCChHHcccccccccccCCCccHHHHhhc
Confidence 9875 99999999996544 566777763
No 83
>KOG1559 consensus Gamma-glutamyl hydrolase [Coenzyme transport and metabolism]
Probab=99.62 E-value=6.5e-16 Score=114.70 Aligned_cols=134 Identities=19% Similarity=0.336 Sum_probs=88.6
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHH-------HcCCCCcEEeehHhHHHHHHHhC-Cee--ccCCCcccccccceeEec-
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVL-------ELGPTVPLFGVCMGLQCIGEAFG-GKI--VRSPLGVMHGKSSLVYYD- 81 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~-------~~~~~~PilGIC~G~Qll~~~~g-g~v--~~~~~~~~~~~~~~~~~~- 81 (174)
-.+|||++||-....++-+..+.+. +.+..+||+|||+|+.+|..... ++. ++.. . ........+.
T Consensus 111 lvNGviftGGwak~~dY~~vvkkifnk~le~nDaGehFPvyg~CLGFE~lsmiISqnrdile~~d-~--vd~AssLqF~~ 187 (340)
T KOG1559|consen 111 LVNGVIFTGGWAKRGDYFEVVKKIFNKVLERNDAGEHFPVYGICLGFELLSMIISQNRDILERFD-A--VDVASSLQFVG 187 (340)
T ss_pred HhceeEecCcccccccHHHHHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHhcChhHHHhhc-c--cccccceeeec
Confidence 3689999999666666665554443 13689999999999999998765 211 1111 0 1111112221
Q ss_pred -cCCCCCcccCCCC--------ceeecccccceecccCCC-----CCCcEEEEEcCCC----ceEEEeeCCCCceEEEec
Q 030626 82 -EKGEDGLLAGLSN--------PFTAGRYHSLVIEKESFP-----SDALEVTAWTEDG----LIMAARHKKYKHLQGVQF 143 (174)
Q Consensus 82 -~~~~~~l~~~~~~--------~~~~~~~H~~~v~~~~l~-----~~~~~~~a~s~~~----~i~a~~~~~~~~~~g~Qf 143 (174)
......+|+.+|. ...+.+.|.++++++.+. ...|.++.++.|+ .|..++.+.|| ++|+||
T Consensus 188 nvn~~~t~FQrFPpELLkkL~~dcLvmq~Hk~gisp~nF~~N~~Ls~FFnilTT~~D~~~k~fvSTv~~~kYP-vtgfQW 266 (340)
T KOG1559|consen 188 NVNIHGTMFQRFPPELLKKLSTDCLVMQNHKFGISPKNFQGNPALSSFFNILTTCTDGNSKTFVSTVESKKYP-VTGFQW 266 (340)
T ss_pred ccceeehhHhhCCHHHHHHhccchheeeccccccchhhccCCHHHHHHHhheeeecCCCceEEEEeecceecc-ceeeee
Confidence 1224556666653 345788999999876542 2457788877655 28889999998 999999
Q ss_pred CCCCcCC
Q 030626 144 HPESIIT 150 (174)
Q Consensus 144 HPE~~~~ 150 (174)
|||+...
T Consensus 267 HPEKnaf 273 (340)
T KOG1559|consen 267 HPEKNAF 273 (340)
T ss_pred cCccCcc
Confidence 9998643
No 84
>PF01174 SNO: SNO glutamine amidotransferase family; InterPro: IPR002161 Members of this family are involved in the pyridoxine biosynthetic pathway [, ]. The regulation of cellular growth and proliferation in response to environmental cues is critical for development and the maintenance of viability in all organisms. In unicellular organisms, such as the budding yeast Saccharomyces cerevisiae (Baker's yeast), growth and proliferation are regulated by nutrient availability. Pyridoxal 5'-phosphate (PLP) is synthesized by the PdxA/PdxJ pathway in some species (mostly within the gamma subdivision of the proteobacteria) and by the Pdx1/Pdx2 pathway in most other organisms. This family describes PdxT, the glutaminase subunit of the PLP synthase. It is involved in the hydrolysis of glutamine to glutamate and ammonia, channeling an ammonia molecule to PdxS. ; PDB: 2ISS_D 4ADS_J 2ABW_B 2YWD_A 2NV0_A 2NV2_N 1R9G_A 1Q7R_A 2YWJ_A.
Probab=99.54 E-value=5.3e-15 Score=106.70 Aligned_cols=147 Identities=24% Similarity=0.381 Sum_probs=85.1
Q ss_pred CchHHHHHHhcCCCEEEeCCCCCCCC----CcchhHHHHHH-cCCC-CcEEeehHhHHHHHHHhCC-----------eec
Q 030626 2 SVNYLVSYCRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPT-VPLFGVCMGLQCIGEAFGG-----------KIV 64 (174)
Q Consensus 2 ~~~~~~~~~~~~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~-~PilGIC~G~Qll~~~~gg-----------~v~ 64 (174)
.++..++|. ++||||||||....- ....+.+.+++ ...+ +|+||+|.|+-+|+....+ +|.
T Consensus 24 ~Vr~~~dL~--~~dgLIiPGGESTti~~ll~~~gL~~~l~~~~~~g~~Pv~GTCAGlIlLa~~v~~~~q~~Lg~ldi~V~ 101 (188)
T PF01174_consen 24 EVRTPEDLE--GLDGLIIPGGESTTIGKLLRRYGLFEPLREFIRSGSKPVWGTCAGLILLAKEVEGQGQPLLGLLDITVR 101 (188)
T ss_dssp EE-SGGGGT--T-SEEEE-SS-HHHHHHHHHHTTHHHHHHHHHHTT--EEEEETHHHHHHEEEECSSCCTSS--EEEEEE
T ss_pred EeCCHHHHc--cCCEEEECCCcHHHHHHHHHHcCCHHHHHHHHHcCCCceeehhHHHHHhhhhhhhcccccccceeEEEE
Confidence 456677775 579999999965431 11123455554 4444 9999999999999874332 344
Q ss_pred cCCCcccccccceeEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEecC
Q 030626 65 RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQFH 144 (174)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfH 144 (174)
|+.++........... +.++..++...+...-.|.+-. .+++.++++..++ .|-+++.. +++++-||
T Consensus 102 RNafGrQ~~SFe~~l~--------i~~~~~~~~avFIRAP~I~~v~-~~~~v~vla~~~g-~iVav~qg---n~latsFH 168 (188)
T PF01174_consen 102 RNAFGRQLDSFEADLD--------IPGLGEPFPAVFIRAPVIEEVG-SPEGVEVLAELDG-KIVAVRQG---NILATSFH 168 (188)
T ss_dssp TTTTCSSSCEEEEEEE--------ETTTESEEEEEESS--EEEEE---TTTEEEEEEETT-EEEEEEET---TEEEESS-
T ss_pred ccccccchhcEEEEEE--------eecCCCcEEEEEcCCcEEEEee-ccccccccccccc-ceEEEEec---CEEEEEeC
Confidence 4443322221111100 1222246677777777766511 1267888887765 55566644 59999999
Q ss_pred CCCcCCCchHHHHHHHHHHHH
Q 030626 145 PESIITTEGKTIVRNFIKMIV 165 (174)
Q Consensus 145 PE~~~~~~~~~l~~~f~~~~~ 165 (174)
||. +.|+.++.++|++++.
T Consensus 169 PEL--T~D~~r~H~yFl~~v~ 187 (188)
T PF01174_consen 169 PEL--TDDDTRIHEYFLEMVV 187 (188)
T ss_dssp GGG--SSTHCHHHHHHHHHHC
T ss_pred Ccc--cCchhHHHHHHHHHhh
Confidence 996 5555899999999874
No 85
>COG0311 PDX2 Predicted glutamine amidotransferase involved in pyridoxine biosynthesis [Coenzyme metabolism]
Probab=99.53 E-value=1.4e-13 Score=98.45 Aligned_cols=145 Identities=23% Similarity=0.348 Sum_probs=87.6
Q ss_pred CchHHHHHHhcCCCEEEeCCCCCCCC----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhCC------------eec
Q 030626 2 SVNYLVSYCRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGG------------KIV 64 (174)
Q Consensus 2 ~~~~~~~~~~~~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg------------~v~ 64 (174)
.++.++++. ..||||||||....- ....+.+.+++ ..+++|+||.|.|+-+|+...-+ +|.
T Consensus 29 ~Vk~~~dL~--~~d~LIiPGGESTTi~rL~~~~gl~e~l~~~~~~G~Pv~GTCAGlIlLakei~~~~~~~~Lg~mdi~V~ 106 (194)
T COG0311 29 EVKRPEDLE--GVDGLIIPGGESTTIGRLLKRYGLLEPLREFIADGLPVFGTCAGLILLAKEILDGPEQPLLGLLDVTVR 106 (194)
T ss_pred EEcCHHHhc--cCcEEEecCccHHHHHHHHHHcCcHHHHHHHHHcCCceEEechhhhhhhhhhcCCCCCcccceEEEEEE
Confidence 467788886 579999999976531 11123344444 67799999999999999965442 111
Q ss_pred cCCCcccccccceeEeccCCCCCcccCCCC--ceeecccccceecccCCCCCCcEEEEEcCCCceEEEeeCCCCceEEEe
Q 030626 65 RSPLGVMHGKSSLVYYDEKGEDGLLAGLSN--PFTAGRYHSLVIEKESFPSDALEVTAWTEDGLIMAARHKKYKHLQGVQ 142 (174)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~H~~~v~~~~l~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~Q 142 (174)
++.++......... --++++.. .+.+.+...-.+.+ ..++.+++|+-++ .|-+++.. +++++-
T Consensus 107 RNAfGRQ~dSFe~~--------~di~~~~~~~~~~avFIRAP~I~~---vg~~V~vLa~l~~-~iVav~qg---n~Lats 171 (194)
T COG0311 107 RNAFGRQVDSFETE--------LDIEGFGLPFPFPAVFIRAPVIEE---VGDGVEVLATLDG-RIVAVKQG---NILATS 171 (194)
T ss_pred ccccccccccceee--------EEeecccCCCcceEEEEEcceeeh---hcCcceEeeeeCC-EEEEEEeC---CEEEEe
Confidence 11111111110000 00111112 24445666666665 3457899998766 45555544 499999
Q ss_pred cCCCCcCCCchHHHHHHHHHHHHH
Q 030626 143 FHPESIITTEGKTIVRNFIKMIVR 166 (174)
Q Consensus 143 fHPE~~~~~~~~~l~~~f~~~~~~ 166 (174)
||||.+ +..++-+.|++.+.+
T Consensus 172 FHPELT---~D~r~Heyf~~~v~~ 192 (194)
T COG0311 172 FHPELT---DDTRLHEYFLDMVLG 192 (194)
T ss_pred cCcccc---CCccHHHHHHHHhhc
Confidence 999975 445888888887654
No 86
>KOG0623 consensus Glutamine amidotransferase/cyclase [Amino acid transport and metabolism]
Probab=99.53 E-value=2.3e-14 Score=111.31 Aligned_cols=149 Identities=21% Similarity=0.290 Sum_probs=92.7
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcc------hhHHHHHH-cCCCCcEEeehHhHHHHHHH------------hCCeec
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSG------ISLQTVLE-LGPTVPLFGVCMGLQCIGEA------------FGGKIV 64 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~------~~~~~i~~-~~~~~PilGIC~G~Qll~~~------------~gg~v~ 64 (174)
+.+-++. +.|-+|++ |.|+..... -+.+.+++ +..++|++|||.|.|+|... +.|.+.
T Consensus 32 ~~P~DI~--~a~rLIfP-GVGnfg~~~D~L~~~Gf~eplr~YiesgkPfmgicvGlQaLF~gSvE~p~skGLgvipg~v~ 108 (541)
T KOG0623|consen 32 QTPGDIL--NADRLIFP-GVGNFGPAMDVLNRTGFAEPLRKYIESGKPFMGICVGLQALFDGSVENPPSKGLGVIPGIVG 108 (541)
T ss_pred cCchhhc--cCceEeec-CcccchHHHHHHhhhhhHHHHHHHHhcCCCeEeehhhHHHHhcccccCCCcCccccccccee
Confidence 3444543 56777765 455543222 23455666 67899999999999999641 234444
Q ss_pred cCCCc---ccccccceeEeccCCCCCcccCCCCceeecccccceeccc--CCCCCCcEEEEEcCCC---ceEEEeeCCCC
Q 030626 65 RSPLG---VMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKE--SFPSDALEVTAWTEDG---LIMAARHKKYK 136 (174)
Q Consensus 65 ~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~--~l~~~~~~~~a~s~~~---~i~a~~~~~~~ 136 (174)
+.... ..|..|+.-.+ .+++.|-++.....+++.|+|..... .+.+.+|++ |+...+ -|.++...
T Consensus 109 RFD~s~k~VPhIGWNsc~v---~sd~effg~~p~~~~YFVHSyl~~ek~~~len~~wki-at~kYG~E~Fi~ai~kn--- 181 (541)
T KOG0623|consen 109 RFDASAKIVPHIGWNSCQV---GSDSEFFGDVPNRHVYFVHSYLNREKPKSLENKDWKI-ATCKYGSESFISAIRKN--- 181 (541)
T ss_pred cccCCCCcCCccccccccc---CCcccccccCCCceEEEEeeecccccccCCCCCCceE-eeeccCcHHHHHHHhcC---
Confidence 44321 23445543322 23344444444556888999965432 456667875 444443 25555432
Q ss_pred ceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626 137 HLQGVQFHPESIITTEGKTIVRNFIKM 163 (174)
Q Consensus 137 ~~~g~QfHPE~~~~~~~~~l~~~f~~~ 163 (174)
+++++|||||+ +++.|...+++|+..
T Consensus 182 N~~AtQFHPEK-SG~aGL~vl~~FL~~ 207 (541)
T KOG0623|consen 182 NVHATQFHPEK-SGEAGLSVLRRFLHQ 207 (541)
T ss_pred ceeeEeccccc-ccchhHHHHHHHHhc
Confidence 69999999999 788999999999983
No 87
>PF13507 GATase_5: CobB/CobQ-like glutamine amidotransferase domain; PDB: 3D54_L 3UMM_A 3UJN_A 3UGJ_A 1T3T_A.
Probab=99.39 E-value=2e-12 Score=99.20 Aligned_cols=151 Identities=17% Similarity=0.238 Sum_probs=86.1
Q ss_pred cCCCEEEeCCCCCCCCCc--ch-----------hHHHHHH-cCC-CCcEEeehHhHHHHHHH--hCC----------eec
Q 030626 12 KNPRGVLISPGPGAPQDS--GI-----------SLQTVLE-LGP-TVPLFGVCMGLQCIGEA--FGG----------KIV 64 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~--~~-----------~~~~i~~-~~~-~~PilGIC~G~Qll~~~--~gg----------~v~ 64 (174)
.++|+|+|+||.+.-+.. +. +.+.+.+ +.+ +.++||||.|+|+|.+. +.+ .+.
T Consensus 45 ~~~~~lvipGGFS~gD~l~sg~~~a~~~~~~~~~~~~i~~f~~~~g~~vLGIcNGfQiL~~~Gllp~~~~~~~~~~~~L~ 124 (259)
T PF13507_consen 45 DDFDGLVIPGGFSYGDYLRSGAIAAARLLFNSPLMDAIREFLERPGGFVLGICNGFQILVELGLLPGGEIKDSEQSPALT 124 (259)
T ss_dssp CC-SEEEE-EE-GGGGTTSTTHHHHHHHCCSCCCHHHHHHHHHCTT-EEEEECHHHHHHCCCCCSTT------TT--EEE
T ss_pred hhCcEEEECCccCccccchHHHHHHHHhhccHHHHHHHHHHHhcCCCeEEEEchHhHHHHHhCcCCCccccccCCCcEEc
Confidence 469999999997644322 22 2344444 444 89999999999999875 666 666
Q ss_pred cCCCcccccccceeEeccCCCCCcccCCCCceeecccccce---e-cc---cCCCCCCcEEEEEcCC-------------
Q 030626 65 RSPLGVMHGKSSLVYYDEKGEDGLLAGLSNPFTAGRYHSLV---I-EK---ESFPSDALEVTAWTED------------- 124 (174)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~~~---v-~~---~~l~~~~~~~~a~s~~------------- 124 (174)
++........|..+......++-.++++ +.+.+...|++. + ++ +.+...+..++.+.++
T Consensus 125 ~N~s~~fe~rwv~~~v~~~s~~~~~~~~-~~~~lPiahgeG~~~~~~~~~l~~l~~~~qi~~~Y~~~~g~~a~~yP~NPN 203 (259)
T PF13507_consen 125 PNASGRFESRWVNLVVNENSPSIFLRGL-EGIVLPIAHGEGRFYARDEATLEELEENGQIAFRYVDEEGNPAQEYPRNPN 203 (259)
T ss_dssp --TTSS-EEEEEEEEE--SSTTCCCTTT-TCEEEEEEESS-EEE-SSHHHHHHHCCTTEEEEEECSTTSSB--STTTSSS
T ss_pred CCCCCCeEEEEEEEEEecCCcceecCCC-CEEEEEEecCcceeecCCHHHHHHHHhcCeEEEEEecCCCCcccCCCCCCC
Confidence 6665554455555544333344445555 345555566532 2 11 1233445555555432
Q ss_pred ---CceEEEeeCCCCceEEEecCCCCcCC--------------CchHHHHHHHHHHH
Q 030626 125 ---GLIMAARHKKYKHLQGVQFHPESIIT--------------TEGKTIVRNFIKMI 164 (174)
Q Consensus 125 ---~~i~a~~~~~~~~~~g~QfHPE~~~~--------------~~~~~l~~~f~~~~ 164 (174)
..|+++.+.++. ++|++.|||+... ..+.++|++-++++
T Consensus 204 GS~~~IAGics~~Gr-vlglMpHPEr~~~~~~~~~~p~~~~~~s~~~~~F~n~~~w~ 259 (259)
T PF13507_consen 204 GSVNNIAGICSPDGR-VLGLMPHPERAFEPWQWPHWPREKWQESPWLRIFQNAVEWF 259 (259)
T ss_dssp --GGGEEEEE-TTSS-EEEESSBCCGTTCCCCSS-S--TT--B-TTHHHHHHHHH--
T ss_pred CCccceeEEEcCCCC-EEEEcCChHHhCchhhcCCCCccccCCChHHHHHHHHhhcC
Confidence 349999999875 9999999998532 23668888877653
No 88
>cd03131 GATase1_HTS Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). Type 1 glutamine amidotransferase (GATase1)-like domain found in homoserine trans-succinylase (HTS). HTS, the first enzyme in methionine biosynthesis in Escherichia coli, transfers a succinyl group from succinyl-CoA to homoserine forming succinyl homoserine. It has been suggested that the succinyl group of succinyl-CoA is initially transferred to an enzyme nucleophile before subsequent transfer to homoserine. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with GATase1 domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. It has been proposed that this cys is in the active site of the molecule. However, as succinyl has been found bound to a conserved lysine residue, this conserved cys may play a role in dimer formation. HTS acti
Probab=99.32 E-value=3e-12 Score=92.69 Aligned_cols=111 Identities=15% Similarity=0.154 Sum_probs=77.4
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcch---h--HHHHHH--cCCCCcEEeehHhHHHHHHHhCCee-ccCCCcccccccce
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGI---S--LQTVLE--LGPTVPLFGVCMGLQCIGEAFGGKI-VRSPLGVMHGKSSL 77 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~---~--~~~i~~--~~~~~PilGIC~G~Qll~~~~gg~v-~~~~~~~~~~~~~~ 77 (174)
.+++...++||+||+|.|-...+..+ | +..+.+ ..+.+|+||||+|+|....+++|.. ..++.+ ..|....
T Consensus 55 ~~~i~~~~yDGlIITGApve~~~fe~v~Yw~El~~i~dwa~~~v~stl~iCWgaqaal~~~yGi~k~~~~~K-~~Gvf~~ 133 (175)
T cd03131 55 FDDIRDAKFDGLIVTGAPVEHLPFEQVDYWEELTEILDWAKTHVTSTLFSCWAAMAALYYFYGIKKHQLPEK-IFGVFPH 133 (175)
T ss_pred HHHccccCCCEEEEeCCCcccCCccccchHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcCcccccCCCc-eEEEEEe
Confidence 45677778999999999986554332 1 222322 3577999999999999999999986 445432 3444432
Q ss_pred eEeccCCCCCcccCCCCceeecccccceecccCC-CCCCcEEEE
Q 030626 78 VYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTA 120 (174)
Q Consensus 78 ~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a 120 (174)
... .+++|++++++.+.+.++|...|+.+.+ ..+++++++
T Consensus 134 ~~~---~~hpL~~g~~d~F~~PhSR~~~v~~~~~~~~~~l~il~ 174 (175)
T cd03131 134 TIL---EPHPLLRGLDDGFDVPHSRYAEVDREDIEEAAGLTILA 174 (175)
T ss_pred eec---CCCccccCCCCceeecCcccccCCHHHHhhCCCCEEcc
Confidence 221 2789999999999999999888875433 235566654
No 89
>PF04204 HTS: Homoserine O-succinyltransferase ; InterPro: IPR005697 This family of enzymes, homoserine O-succinyltransferase, catalyses the first step in the biosynthesis of methionine: Succinyl-CoA + L-homoserine = CoA + O-succinyl-L-homoserine This enzyme is consequently essential for the survival of bacteria, plants and fungi. Since they are not found in humans, they make a promising new target for antimicrobial drug development. Homoserine O-succinyltransferase (HST) is a representative from this class and has recently had the key amino acids involved in substrate specificity and catalysis elucidated [].; GO: 0016746 transferase activity, transferring acyl groups, 0019281 L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine, 0005737 cytoplasm; PDB: 2H2W_A 2GHR_A 2VDJ_A.
Probab=99.28 E-value=1.4e-11 Score=95.46 Aligned_cols=154 Identities=16% Similarity=0.210 Sum_probs=93.3
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcch--hH---HHHHH--cCCCCcEEeehHhHHH-HHHHhCCeeccCCCcccccccc
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGI--SL---QTVLE--LGPTVPLFGVCMGLQC-IGEAFGGKIVRSPLGVMHGKSS 76 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~--~~---~~i~~--~~~~~PilGIC~G~Ql-l~~~~gg~v~~~~~~~~~~~~~ 76 (174)
.++++.+.++||+||+|-|-..-+-.+ +. ..|.+ ..+..+.|.||+|.|. |....|..-...+. ...|...
T Consensus 90 ~~~~i~~~~~DglIITGAPvE~l~Fe~V~YW~El~~i~dwa~~~v~stl~iCWgAqAaLy~~yGI~K~~l~~-KlfGVf~ 168 (298)
T PF04204_consen 90 TFDEIKDRKFDGLIITGAPVEQLPFEEVDYWDELTEIFDWAKTHVTSTLFICWGAQAALYHFYGIPKYPLPE-KLFGVFE 168 (298)
T ss_dssp -HHHCTTS-EEEEEE---TTTTS-GGGSTTHHHHHHHHHHHHHHEEEEEEETHHHHHHHHHHH----EEEEE-EEEEEEE
T ss_pred CHHHHhhCCCCEEEEeCCCcCCCCcccCCcHHHHHHHHHHHHHcCCcchhhhHHHHHHHHHHcCCCcccCCC-cceecee
Confidence 356777778999999999886543322 22 33333 3467999999999999 66777776666552 2245543
Q ss_pred eeEeccCCCCCcccCCCCceeecccccceecccCC-CCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHH
Q 030626 77 LVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKT 155 (174)
Q Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~ 155 (174)
... ....++|++++++.+.+.++..-.+..+.+ ..++++++|.|++.-+..+..+++. .+=+|.|||+ +...
T Consensus 169 ~~~--~~~~~pLl~Gfdd~f~~PhSR~t~i~~~~i~~~~~L~vLa~s~~~G~~l~~~~d~r-~vfi~GH~EY----d~~T 241 (298)
T PF04204_consen 169 HRV--LDPDHPLLRGFDDTFFAPHSRYTEIDRDDIKKAPGLEVLAESEEAGVFLVASKDGR-QVFITGHPEY----DADT 241 (298)
T ss_dssp EEE--S-SS-GGGTT--SEEEEEEEEEEE--HHHHCT-TTEEEEEEETTTEEEEEEECCCT-EEEE-S-TT------TTH
T ss_pred eec--cCCCChhhcCCCccccCCcccccCCCHHHHhcCCCcEEEeccCCcceEEEEcCCCC-EEEEeCCCcc----ChhH
Confidence 321 225789999999988888776666665444 4678999999988777777777765 7889999999 4556
Q ss_pred HHHHHHHHHHH
Q 030626 156 IVRNFIKMIVR 166 (174)
Q Consensus 156 l~~~f~~~~~~ 166 (174)
|-+.+.+.+.+
T Consensus 242 L~~EY~RD~~~ 252 (298)
T PF04204_consen 242 LAKEYRRDLAK 252 (298)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHHhC
Confidence 66666665554
No 90
>TIGR01857 FGAM-synthase phosphoribosylformylglycinamidine synthase, clade II. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This model represents a second clade of these enzymes found in Clostridia, Bifidobacteria and Streptococcus species. This enzyme performs the fourth step in IMP biosynthesis (the precursor of all purines) from PRPP.
Probab=99.22 E-value=1.4e-10 Score=104.42 Aligned_cols=149 Identities=14% Similarity=0.175 Sum_probs=90.8
Q ss_pred CCCEEEeCCCCCCCCCc---chh----------HHHHHH-cCCCCcEEeehHhHHHHHHH--hC-C----------eecc
Q 030626 13 NPRGVLISPGPGAPQDS---GIS----------LQTVLE-LGPTVPLFGVCMGLQCIGEA--FG-G----------KIVR 65 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~---~~~----------~~~i~~-~~~~~PilGIC~G~Qll~~~--~g-g----------~v~~ 65 (174)
++++|+++||...-... +.+ .+.+.+ ..++.++||||.|||+|+.. +. + ++.+
T Consensus 1031 ~~~~l~~pGGFSyGD~l~~~~~~~aa~~~n~~~~~~~~~f~~~d~~~LGICNGfQ~L~~lGLlP~~~~~~~~~~~p~l~~ 1110 (1239)
T TIGR01857 1031 KSQILMLPGGFSAGDEPDGSAKFIAAILRNPKVRVAIDSFLARDGLILGICNGFQALVKSGLLPYGNIEAANETSPTLTY 1110 (1239)
T ss_pred cCcEEEEcCccCcccccchhHHHHHHHhhChHHHHHHHHHHhCCCcEEEechHHHHHHHcCCCcCccccccccCCceeee
Confidence 68999999997654332 222 233333 46899999999999999875 21 2 3333
Q ss_pred CCCcccccccceeEeccCCCCCcccCCC--Cceeecccccce---eccc---CCCCCCcEEEEE-------------cCC
Q 030626 66 SPLGVMHGKSSLVYYDEKGEDGLLAGLS--NPFTAGRYHSLV---IEKE---SFPSDALEVTAW-------------TED 124 (174)
Q Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~H~~~---v~~~---~l~~~~~~~~a~-------------s~~ 124 (174)
+........|..+.+. ..+++++.++. ..+.+...|+.+ .+.+ .+..++...+-+ +++
T Consensus 1111 N~s~rf~~r~v~~~v~-~~~s~~~~~~~~g~~~~ipvaHgEGrf~~~~~~l~~l~~~~qva~rYvd~~g~~t~~~p~NPN 1189 (1239)
T TIGR01857 1111 NDINRHVSKIVRTRIA-STNSPWLSGVSVGDIHAIPVSHGEGRFVASDEVLAELRENGQIATQYVDFNGKPSMDSKYNPN 1189 (1239)
T ss_pred cCCCCeEEeeeEEEEC-CCCChhHhcCCCCCEEEEEeEcCCcceecCHHHHHHHHHCCcEEEEEeCCCCCcccCCCCCCC
Confidence 3323222333333333 35778887764 446777778653 2111 122334444333 223
Q ss_pred C---ceEEEeeCCCCceEEEecCCCCcCC--------CchHHHHHHHHHH
Q 030626 125 G---LIMAARHKKYKHLQGVQFHPESIIT--------TEGKTIVRNFIKM 163 (174)
Q Consensus 125 ~---~i~a~~~~~~~~~~g~QfHPE~~~~--------~~~~~l~~~f~~~ 163 (174)
+ .|+++...+++ ++|++.||||... .++..||++.++.
T Consensus 1190 GS~~~IaGi~s~dGr-vlg~MpHpER~~~~~~~~~~g~~~~~iF~~~v~y 1238 (1239)
T TIGR01857 1190 GSSLAIEGITSPDGR-IFGKMGHSERYGDGLFKNIPGNKDQHLFASGVKY 1238 (1239)
T ss_pred CChhhhhEeECCCCC-EEEECCCcccccCcccCCCCchhhhHHHHHHHhh
Confidence 3 38999999875 9999999999632 2457899888753
No 91
>TIGR01001 metA homoserine O-succinyltransferase. The apparent equivalog from Bacillus subtilis is broken into two tandem reading frames.
Probab=99.17 E-value=4.2e-10 Score=86.85 Aligned_cols=152 Identities=18% Similarity=0.159 Sum_probs=102.5
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCc---chh--HHHHHH--cCCCCcEEeehHhHHHH-HHHhCCeeccCCCcccccccc
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDS---GIS--LQTVLE--LGPTVPLFGVCMGLQCI-GEAFGGKIVRSPLGVMHGKSS 76 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~---~~~--~~~i~~--~~~~~PilGIC~G~Qll-~~~~gg~v~~~~~~~~~~~~~ 76 (174)
.++++...++||+||+|-|--.-+. ..| +..|.+ ..+-..+|.||+|.|.. ....|-.-...+. ...|...
T Consensus 91 ~f~~ik~~~fDGlIITGAPvE~l~FeeV~YW~El~~I~dwsk~~v~Stl~iCWaAqAaLy~~yGI~K~~l~~-KlfGVf~ 169 (300)
T TIGR01001 91 TFEAVKDRKFDGLIITGAPVELVPFEDVAYWEELTEIMEWSKHNVTSTMFICWAAQAGLKYFYGIPKYTLPE-KLSGVYK 169 (300)
T ss_pred CHHHHhcCCCCEEEEcCCCcCCCCcccCCcHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHcCCCccccCC-ceEEeec
Confidence 3567878899999999998754322 222 233333 35778999999999995 4455655444542 2345443
Q ss_pred eeEeccCCCCCcccCCCCceeecccccceecccCCC-CCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHH
Q 030626 77 LVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFP-SDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKT 155 (174)
Q Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~-~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~ 155 (174)
.... ..++|++++++.+.+.++..-.+..+.+. .++++++|.|++.-+..+..+++. -+=++.|||+ +...
T Consensus 170 h~~~---~~~pL~rGfdd~f~~PhSR~t~i~~~~i~~~~~L~vla~s~e~G~~l~~s~d~r-~vfi~GH~EY----d~~T 241 (300)
T TIGR01001 170 HDIA---PDSLLLRGFDDFFLAPHSRYADFDAEDIDKVTDLEILAESDEAGVYLAANKDER-NIFVTGHPEY----DAYT 241 (300)
T ss_pred CccC---CCCccccCCCCccccCCCCCCCCCHHHHhcCCCCeEEecCCCcceEEEEcCCCC-EEEEcCCCcc----ChhH
Confidence 2211 57899999999988877665556643333 368999999987667777777665 5669999999 4556
Q ss_pred HHHHHHHHHH
Q 030626 156 IVRNFIKMIV 165 (174)
Q Consensus 156 l~~~f~~~~~ 165 (174)
|-+.+.+.+.
T Consensus 242 L~~EY~RD~~ 251 (300)
T TIGR01001 242 LHQEYVRDIG 251 (300)
T ss_pred HHHHHHHHHH
Confidence 6666665544
No 92
>TIGR01735 FGAM_synt phosphoribosylformylglycinamidine synthase, single chain form. This model represents a single-molecule form of phosphoribosylformylglycinamidine synthase, also called FGAM synthase, an enzyme of purine de novo biosynthesis. This form is found mostly in eukaryotes and Proteobacteria. In Bacillus subtilis PurL (FGAM synthase II) and PurQ (FGAM synthase I), homologous to different parts of this model, perform the equivalent function; the unrelated small protein PurS is also required and may be a third subunit.
Probab=99.02 E-value=2.3e-09 Score=97.75 Aligned_cols=149 Identities=18% Similarity=0.214 Sum_probs=90.0
Q ss_pred CCCEEEeCCCCCCCC--Ccch-h----------HHHHHH-c-CCCCcEEeehHhHHHHHHH---hCCe-----eccCCCc
Q 030626 13 NPRGVLISPGPGAPQ--DSGI-S----------LQTVLE-L-GPTVPLFGVCMGLQCIGEA---FGGK-----IVRSPLG 69 (174)
Q Consensus 13 ~~dgiii~GG~~~~~--~~~~-~----------~~~i~~-~-~~~~PilGIC~G~Qll~~~---~gg~-----v~~~~~~ 69 (174)
++++|+++||...-. ..+. | .+.+.+ . .++.++||||.|+|+|+.. +++. +.++...
T Consensus 1100 ~~~~lv~~GGFSygD~lgsg~~~a~~i~~~~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~~~gllp~~~~~p~l~~N~s~ 1179 (1310)
T TIGR01735 1100 EFRGLAACGGFSYGDVLGAGKGWAKSILFNPRLRDQFQAFFKRPDTFSLGVCNGCQMLSNLLEWIPGTENWPHFVRNNSE 1179 (1310)
T ss_pred heeEEEEcCCCCCccchhHHHHHHHHHHhChHHHHHHHHHHhCCCceEEEecHHHHHHHHHhCcCCCCCCCceeeecCCC
Confidence 579999999965432 2222 2 233333 3 6889999999999999943 3332 4455444
Q ss_pred ccccccceeEeccCCCCCcccCCCC-ceeecccccce---eccc----CCCCCCcEEEEEc-------------CCC---
Q 030626 70 VMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLV---IEKE----SFPSDALEVTAWT-------------EDG--- 125 (174)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~---v~~~----~l~~~~~~~~a~s-------------~~~--- 125 (174)
.....|..+.+.. .++.+++++.. .+.++..|+++ +..+ .+...+...+-+. +++
T Consensus 1180 ~fe~r~~~~~v~~-s~s~~~~~~~g~~l~~~vaHgEGr~~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~ 1258 (1310)
T TIGR01735 1180 RFEARVASVRVGE-SPSIMLRGMAGSRLPVAVAHGEGYAAFSSPELQAQADASGLAALRYIDDDGNPTEAYPLNPNGSPG 1258 (1310)
T ss_pred CeEEeeeEEEECC-CCChhhhhcCCCEEEEEeEcCCCCeeeCCHHHHHHHHhCCeEEEEEeCCCCCccCCCCCCCCCChh
Confidence 4344455555543 46778877753 36667777542 1111 1223343333332 223
Q ss_pred ceEEEeeCCCCceEEEecCCCCcCC--------------CchHHHHHHHHHH
Q 030626 126 LIMAARHKKYKHLQGVQFHPESIIT--------------TEGKTIVRNFIKM 163 (174)
Q Consensus 126 ~i~a~~~~~~~~~~g~QfHPE~~~~--------------~~~~~l~~~f~~~ 163 (174)
.|+++...+++ ++|++.||||... ..+.+||+|...+
T Consensus 1259 ~IaGi~s~dGr-vl~~MpHPEr~~~~~q~~~~p~~~~~~~pw~~~F~na~~w 1309 (1310)
T TIGR01735 1259 GIAGITSCDGR-VTIMMPHPERVFRAWQNSWRPEDWDEDTPWLRLFRNARNW 1309 (1310)
T ss_pred cceEeECCCCC-EEEEcCCHHHhhhHhhCCcCCCCCCCCCcHHHHHHHHHHh
Confidence 38999999875 9999999998421 1356777776643
No 93
>PLN03206 phosphoribosylformylglycinamidine synthase; Provisional
Probab=99.00 E-value=4.1e-09 Score=95.79 Aligned_cols=150 Identities=21% Similarity=0.211 Sum_probs=89.3
Q ss_pred CCCEEEeCCCCC--CCCCcchh-----------HHHHHH-c-CCCCcEEeehHhHHHHHHH--hCCe-------------
Q 030626 13 NPRGVLISPGPG--APQDSGIS-----------LQTVLE-L-GPTVPLFGVCMGLQCIGEA--FGGK------------- 62 (174)
Q Consensus 13 ~~dgiii~GG~~--~~~~~~~~-----------~~~i~~-~-~~~~PilGIC~G~Qll~~~--~gg~------------- 62 (174)
++++|+++||.. +..+.+.. .+.+.+ + .++.++||||.|+|+|+.. +.+.
T Consensus 1082 ~~~glv~pGGFSyGD~l~sg~~wa~~i~~n~~~~~~~~~f~~~~d~~~LGICNGfQiL~~lgllPg~~~~~~~~~~~~e~ 1161 (1307)
T PLN03206 1082 DFRGIVFVGGFSYADVLDSAKGWAGSIRFNEPLLQQFQEFYNRPDTFSLGVCNGCQLMALLGWVPGPQVGGGLGAGGDPS 1161 (1307)
T ss_pred ceeEEEEcCcCCCccccchHHHHHHHHHhChHHHHHHHHHHhCCCceEEEEcHHHHHHHHcCCCCCCccccccccccccC
Confidence 689999999974 44444421 233333 3 4689999999999999875 1111
Q ss_pred ---eccCCCcccccccceeEeccCCCCCcccCCCC-ceeeccccccee---ccc----CCCCCCcEEEEE----------
Q 030626 63 ---IVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLVI---EKE----SFPSDALEVTAW---------- 121 (174)
Q Consensus 63 ---v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~v---~~~----~l~~~~~~~~a~---------- 121 (174)
+.++........|..+.+ ...++.+++++.. .+.++..|++.- ..+ .+..++...+-+
T Consensus 1162 ~p~l~~N~s~rfesr~v~v~V-~~s~si~l~~~~G~~l~i~vaHgEGr~~~~~~~~l~~l~~~gqva~rY~d~~g~~t~~ 1240 (1307)
T PLN03206 1162 QPRFVHNESGRFECRFTSVTI-EDSPAIMLKGMEGSTLGVWAAHGEGRAYFPDESVLDEVLKSNLAPVRYCDDDGEPTEQ 1240 (1307)
T ss_pred CceeeecCCCCeEEeceEEEE-CCCCChhhcccCCCEEEEEEEcCCCCeecCCHHHHHHHHhcCeEEEEEeCCCCCccCC
Confidence 222222222233444444 3357778877653 366677776432 111 122334443333
Q ss_pred ---cCCC---ceEEEeeCCCCceEEEecCCCCcCC------------------CchHHHHHHHHHHH
Q 030626 122 ---TEDG---LIMAARHKKYKHLQGVQFHPESIIT------------------TEGKTIVRNFIKMI 164 (174)
Q Consensus 122 ---s~~~---~i~a~~~~~~~~~~g~QfHPE~~~~------------------~~~~~l~~~f~~~~ 164 (174)
++++ .|+++...+++ ++|++.||||... ..+.+||+|...++
T Consensus 1241 yP~NPNGS~~~IAGi~s~dGR-vlgmMpHPER~~~~~q~~~~p~~~~~~~~~~spw~~~F~na~~w~ 1306 (1307)
T PLN03206 1241 YPFNPNGSPLGIAALCSPDGR-HLAMMPHPERCFLMWQFPWYPKEWGVDPAGPSPWLKMFQNAREWC 1306 (1307)
T ss_pred CCCCCCCChhhceeeECCCCC-EEEEcCCHHHhhhhhhCCCCCccccccCCCCCcHHHHHHHHHHHh
Confidence 1223 38999999875 9999999998521 13567888877654
No 94
>PRK05297 phosphoribosylformylglycinamidine synthase; Provisional
Probab=98.95 E-value=1e-08 Score=93.80 Aligned_cols=150 Identities=19% Similarity=0.254 Sum_probs=90.4
Q ss_pred CCCEEEeCCCCCCCCC--cch-h----------HHHHHH-c-CCCCcEEeehHhHHHHHHHh---CC-----eeccCCCc
Q 030626 13 NPRGVLISPGPGAPQD--SGI-S----------LQTVLE-L-GPTVPLFGVCMGLQCIGEAF---GG-----KIVRSPLG 69 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~--~~~-~----------~~~i~~-~-~~~~PilGIC~G~Qll~~~~---gg-----~v~~~~~~ 69 (174)
++++|+++||...-.. .+. + .+.+.+ + .++.++||||.|+|+|...- .+ ++.++...
T Consensus 1080 ~~~~l~~~GGFS~gD~lgsg~~~a~~~~~n~~~~~~~~~f~~~~d~~~LGiCNGfQ~L~~lg~l~p~~~~~p~l~~N~s~ 1159 (1290)
T PRK05297 1080 DFKGLVACGGFSYGDVLGAGEGWAKSILFNPRLRDQFEAFFARPDTFALGVCNGCQMMSNLKEIIPGAEHWPRFVRNRSE 1159 (1290)
T ss_pred hCcEEEECCccCCcccchHHHHHHHHhhccHHHHHHHHHHHhCCCceEEEEcHHHHHHHHhCCccCCCCCCCeEeecCCC
Confidence 6899999999654332 222 2 233433 3 67899999999999999861 11 23444433
Q ss_pred ccccccceeEeccCCCCCcccCCCC-ceeecccccce---eccc---CCCCCCcEEEEE-------------cCCC---c
Q 030626 70 VMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLV---IEKE---SFPSDALEVTAW-------------TEDG---L 126 (174)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~---v~~~---~l~~~~~~~~a~-------------s~~~---~ 126 (174)
.....|..+.+. ..++++++++.. .+.++-.|++. .+.+ .+...+...+-+ ++++ .
T Consensus 1160 rfesr~~~~~v~-~~~s~~~~~~~g~~l~~~vaHgeGr~~~~~~~~~~l~~~~~ia~~Y~d~~g~~~~~yp~NPNGS~~~ 1238 (1290)
T PRK05297 1160 QFEARFSLVEVQ-ESPSIFLQGMAGSRLPIAVAHGEGRAEFPDAHLAALEAKGLVALRYVDNHGQVTETYPANPNGSPNG 1238 (1290)
T ss_pred CeEEeeeEEEEC-CCCChhHhhcCCCEEEEEEEcCcccEEcCHHHHHHHHHCCcEEEEEECCCCCcccCCCCCCCCChhc
Confidence 333444444444 357788877753 36666677642 2111 122233333333 2233 3
Q ss_pred eEEEeeCCCCceEEEecCCCCcCCC------------ch--HHHHHHHHHHH
Q 030626 127 IMAARHKKYKHLQGVQFHPESIITT------------EG--KTIVRNFIKMI 164 (174)
Q Consensus 127 i~a~~~~~~~~~~g~QfHPE~~~~~------------~~--~~l~~~f~~~~ 164 (174)
|+++.+.+++ ++|++.||||.... ++ .++|+|...++
T Consensus 1239 IaGi~s~dGr-vlglMpHPEr~~~~~q~~~~p~~~~~~~PW~~~F~na~~w~ 1289 (1290)
T PRK05297 1239 ITGLTTADGR-VTIMMPHPERVFRTVQNSWHPEEWGEDSPWMRMFRNARKWV 1289 (1290)
T ss_pred ceEeECCCCC-EEEEcCChHHhcchhhcCcCCCcccCCCHHHHHHHHHHHHh
Confidence 9999999875 99999999985321 35 67888776553
No 95
>KOG3210 consensus Imidazoleglycerol-phosphate synthase subunit H-like [Coenzyme transport and metabolism]
Probab=98.94 E-value=5.6e-09 Score=73.90 Aligned_cols=58 Identities=14% Similarity=0.320 Sum_probs=40.1
Q ss_pred CCchHHHHHHhcCCCEEEeCCCCCCCC----CcchhHHHHHH-c-CCCCcEEeehHhHHHHHHHhC
Q 030626 1 MSVNYLVSYCRKNPRGVLISPGPGAPQ----DSGISLQTVLE-L-GPTVPLFGVCMGLQCIGEAFG 60 (174)
Q Consensus 1 ~~~~~~~~~~~~~~dgiii~GG~~~~~----~~~~~~~~i~~-~-~~~~PilGIC~G~Qll~~~~g 60 (174)
|+++..+++. ++|++||+||....- ....+...+++ . ...+|+||.|.||-+|..-+.
T Consensus 46 ~tVKT~~D~a--q~DaLIIPGGEST~mslia~~tgL~d~L~~fVhn~~k~~WGTCAGmI~LS~ql~ 109 (226)
T KOG3210|consen 46 MTVKTKNDLA--QCDALIIPGGESTAMSLIAERTGLYDDLYAFVHNPSKVTWGTCAGMIYLSQQLS 109 (226)
T ss_pred EeecCHHHHh--hCCEEEecCCchhHHHHHHhhhhhHHHHHHHhcCCCccceeechhhhhhhhhhc
Confidence 4567777775 789999999976532 11123344444 3 455999999999999987544
No 96
>PRK06278 cobyrinic acid a,c-diamide synthase; Validated
Probab=98.69 E-value=1.1e-07 Score=79.10 Aligned_cols=50 Identities=18% Similarity=0.343 Sum_probs=33.1
Q ss_pred HHHHHhcCCCEEEeCCCCCC-CCCc-chhHHHHHHcCCCCcEEeehHhHHHHHHHh
Q 030626 6 LVSYCRKNPRGVLISPGPGA-PQDS-GISLQTVLELGPTVPLFGVCMGLQCIGEAF 59 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~-~~~~-~~~~~~i~~~~~~~PilGIC~G~Qll~~~~ 59 (174)
.+++. ++|+||||||.-. ..+. ..+.+.+++. ++||||||.|||+|++..
T Consensus 31 ~~~l~--~~D~lILPGG~~~~~~~l~~~l~~~i~~~--g~pvlGICgG~QmLg~~~ 82 (476)
T PRK06278 31 IKEIK--DLDGLIIPGGSLVESGSLTDELKKEILNF--DGYIIGICSGFQILSEKI 82 (476)
T ss_pred hHHhc--cCCEEEECCCchhhcchHHHHHHHHHHHc--CCeEEEEcHHHHhccccc
Confidence 34553 6899999997422 1111 1223444444 799999999999999875
No 97
>TIGR01739 tegu_FGAM_synt herpesvirus tegument protein/v-FGAM-synthase. This model describes a family of large proteins of herpesvirues. The protein is described variably as tegument protein or phosphoribosylformylglycinamidine synthase (FGAM-synthase). Most of the length of the protein shows homology to eukaryotic FGAM-synthase. Functional characterizations were not verified during construction of this model.
Probab=98.50 E-value=8.2e-07 Score=81.11 Aligned_cols=134 Identities=13% Similarity=0.164 Sum_probs=73.8
Q ss_pred CCCEEEeCCCCCCCCCc--ch-----------hHHHHHH-c-CCCCcEEeehH-hHHHHHHH--hCC-------------
Q 030626 13 NPRGVLISPGPGAPQDS--GI-----------SLQTVLE-L-GPTVPLFGVCM-GLQCIGEA--FGG------------- 61 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~--~~-----------~~~~i~~-~-~~~~PilGIC~-G~Qll~~~--~gg------------- 61 (174)
+++||+++||.+.-... +. +.+.+.+ + .++.++||||. |+|+|+.. ++.
T Consensus 973 ~f~glv~~Ggfsy~D~lgsg~~~a~~il~n~~~~~~~~~f~~r~dtf~LGiCN~G~Q~L~~lg~l~~~~~~~~~~~~~~~ 1052 (1202)
T TIGR01739 973 TFSGLIIGGASGTLDSEVGARALAAALLRNQAFLRDLLTFLNRPDTFSLGFGELGCQLLLALNIVGYTQSSPFITVPTEV 1052 (1202)
T ss_pred heEEEEEcCcCCCCccchHHHHHHHHhhcchHHHHHHHHHHhCCCceEEEeCcHHHHHHHHcCCCcCCcccccccccccc
Confidence 67899998887644322 22 1233333 3 56899999998 99999974 110
Q ss_pred ----eeccCCCcccccccceeEeccCCCCCcccCCCCc-eeecccccc----eeccc----CCCCCCcEEEEEc------
Q 030626 62 ----KIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP-FTAGRYHSL----VIEKE----SFPSDALEVTAWT------ 122 (174)
Q Consensus 62 ----~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~H~~----~v~~~----~l~~~~~~~~a~s------ 122 (174)
++.++..+.....|..+++....++.+++++... +..+. |+. .+..+ .+...+...+-+.
T Consensus 1053 ~~~~~l~~N~s~~fesr~~~v~i~~~s~si~~~~~~g~~lp~wv-~g~~~g~~~~~~~~~~~l~~~g~va~~Y~d~~~~~ 1131 (1202)
T TIGR01739 1053 QEPPRLEKNASGLYESRWLNFYIPETTKSVFLRPLRGSVLPCWA-QGTHLGLYHPDDGVEEELENSGQIASTFHGNSPSS 1131 (1202)
T ss_pred cCCceeeecCCCCeEEeeeEEEeCCCCCChhhhhcCCCEeccce-EeccCCcEECCHHHHHHHHhCCeEEEEEeCCCCCC
Confidence 1222222222334444555433566677766533 33332 322 12111 1222233222221
Q ss_pred ----------CC--CceEEEeeCCCCceEEEecCCCCc
Q 030626 123 ----------ED--GLIMAARHKKYKHLQGVQFHPESI 148 (174)
Q Consensus 123 ----------~~--~~i~a~~~~~~~~~~g~QfHPE~~ 148 (174)
++ ..|+++...++. ++|+++|||+.
T Consensus 1132 g~~a~~yP~NPNGS~~IAGi~s~dGR-~l~lMphPer~ 1168 (1202)
T TIGR01739 1132 GLPATNYPRNPSGGSNVAGLCSADGR-HLALLIDPSLS 1168 (1202)
T ss_pred CccccCCCCCCCcCcceeeEECCCCC-EEEecCCHHHh
Confidence 11 248999999875 99999999985
No 98
>PHA03366 FGAM-synthase; Provisional
Probab=98.48 E-value=1.1e-06 Score=80.68 Aligned_cols=153 Identities=12% Similarity=0.145 Sum_probs=83.2
Q ss_pred CCCEEEeCCCCCCCCCcc--h-h----------HHHHHH-c-CCCCcEEeehH-hHHHHHHH--hC--------------
Q 030626 13 NPRGVLISPGPGAPQDSG--I-S----------LQTVLE-L-GPTVPLFGVCM-GLQCIGEA--FG-------------- 60 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~--~-~----------~~~i~~-~-~~~~PilGIC~-G~Qll~~~--~g-------------- 60 (174)
+++||+++||.+.-+..+ . + .+.+.+ . .++.++||||. |+|+|+.. +|
T Consensus 1072 ~f~glv~~GGFS~gD~l~~~~~~a~~il~n~~~~~~~~~f~~r~dt~~LGiCN~G~Q~L~~lgll~~~~~~~~p~g~i~~ 1151 (1304)
T PHA03366 1072 EFSGLVIGGSSGAEDSYTGARAAVAALLSNPAVRDALLRFLNRPDTFSLGCGELGCQILFALKAVGSTAPSPVPGTETEE 1151 (1304)
T ss_pred cceEEEEcCCCCCcccccHHHHHHHHhhhchHHHHHHHHHHhCCCCeEEEeCcHHHHHHHHcCCccCCcccccccccccc
Confidence 578999999977543322 1 1 233443 3 46899999998 99999874 21
Q ss_pred ---CeeccCCCcccccccceeEeccCCCCCcccCCCCc-eeecccccce---eccc----CCCCCCcEEEEEc-------
Q 030626 61 ---GKIVRSPLGVMHGKSSLVYYDEKGEDGLLAGLSNP-FTAGRYHSLV---IEKE----SFPSDALEVTAWT------- 122 (174)
Q Consensus 61 ---g~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~H~~~---v~~~----~l~~~~~~~~a~s------- 122 (174)
.++.++..+.....|..+++....++.+++++... +-++..|.+. ...+ .+...+...+-+.
T Consensus 1152 ~~~~~l~~N~s~rfesr~~~v~i~~~s~Si~l~~~~Gs~lP~w~~g~~~~~~~~~~~~~~~l~~~~~ia~~Y~d~~~~~g 1231 (1304)
T PHA03366 1152 QWPITLEPNASGLYESRWLNFYIPETTKSVALRPLRGSVLPCWAQGTHLGFRYPNDGMEYILRNSGQIAATFHGADVDPG 1231 (1304)
T ss_pred CCCCeEeeeCCCCeEeeceEEEeCCCCCCccccccCCCCCCEEeCCCccccccCCHHHHHHHHhCCcEEEEEeCCCCCcC
Confidence 22333333333344444555433456666665422 2233222220 1110 1112222222221
Q ss_pred ---------CC--CceEEEeeCCCCceEEEecCCCCcCC---------Cc-----h--HHHHHHHHHHHHH
Q 030626 123 ---------ED--GLIMAARHKKYKHLQGVQFHPESIIT---------TE-----G--KTIVRNFIKMIVR 166 (174)
Q Consensus 123 ---------~~--~~i~a~~~~~~~~~~g~QfHPE~~~~---------~~-----~--~~l~~~f~~~~~~ 166 (174)
++ ..|+++...++. ++|+++|||+... .. + .++|+|-..++.+
T Consensus 1232 ~~t~~yP~NPNGS~~IaGi~s~dGR-~l~mMphPer~~~~~q~~~~P~~~~~~~~sPW~~mF~na~~W~~~ 1301 (1304)
T PHA03366 1232 NPARHYPRNPTGNSNVAGLCSADGR-HLALLFDPSLSFHPWQWQHVPPENGPLKVSPWKLMFQDLHLWCLK 1301 (1304)
T ss_pred ccccCCCCCCCcCcceeeEECCCCC-EEEecCCHHHhhhhhhCCCCCcccCCCCCChHHHHHHHHHHHHHh
Confidence 11 348999999875 9999999998522 11 2 2577776666654
No 99
>COG1897 MetA Homoserine trans-succinylase [Amino acid transport and metabolism]
Probab=98.48 E-value=1.2e-06 Score=66.20 Aligned_cols=140 Identities=19% Similarity=0.126 Sum_probs=89.0
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcch---h--HHHHHH--cCCCCcEEeehHhHHHHHHHhCC-eeccCCCcccccccc
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGI---S--LQTVLE--LGPTVPLFGVCMGLQCIGEAFGG-KIVRSPLGVMHGKSS 76 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~---~--~~~i~~--~~~~~PilGIC~G~Qll~~~~gg-~v~~~~~~~~~~~~~ 76 (174)
.++++.+.++||+||+|-|----+..+ | ++.|.+ -.+=.-.|-||+|.|.-...+=| .-...+. ...|...
T Consensus 91 tfeeVk~~~FDG~IiTGAPve~l~feeV~YW~el~~I~eWskt~V~STl~ICWgaqAaly~~yGv~K~~l~~-Kl~GVy~ 169 (307)
T COG1897 91 TFEEVKDQKFDGLIITGAPVELLPFEEVAYWEELKQIFEWSKTHVTSTLHICWGAQAALYYFYGVPKYTLPE-KLSGVYK 169 (307)
T ss_pred cHHHHhhcccCceEEeCCcccccCchhhhhHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHcCCCccccch-hhhceee
Confidence 367888889999999998875433322 2 233444 23445689999999998776544 2233331 2234432
Q ss_pred eeEeccCCCCCcccCCCCceeecccccceecccCC-CCCCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCc
Q 030626 77 LVYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESF-PSDALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESI 148 (174)
Q Consensus 77 ~~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l-~~~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~ 148 (174)
... ....+.+++++.+.+.+.++..-.+.++.+ .-+++++++.|+..-+.-+..+++. -+=+-.|||+.
T Consensus 170 h~~--l~p~~~l~rGfdd~f~~PhSR~t~~~~e~i~~~~~LeIL~es~e~G~~l~a~k~~r-~ifv~gH~EYD 239 (307)
T COG1897 170 HDI--LSPHSLLTRGFDDSFLAPHSRYTDVPKEDILAVPDLEILAESKEAGVYLLASKDGR-NIFVTGHPEYD 239 (307)
T ss_pred ccc--cCccchhhccCCccccCcccccccCCHHHHhhCCCceeeecccccceEEEecCCCC-eEEEeCCcchh
Confidence 221 224677899998888777665555544322 2357999999977666666666665 55567899974
No 100
>cd01750 GATase1_CobQ Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). Type 1 glutamine amidotransferase (GATase1) domain found in Cobyric Acid Synthase (CobQ). CobQ plays a role in cobalamin biosythesis. CobQ catalyses amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide in the biosynthesis of cobalamin. CobQ belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobQ.
Probab=98.47 E-value=9.7e-08 Score=70.67 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=34.5
Q ss_pred CCCEEEeCCCCCCCCCc-----chhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626 13 NPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 60 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~-----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g 60 (174)
++|+|||+||.....+. ..+.+.|++ ...++|+||||.|+|+|+..+.
T Consensus 37 ~~d~lilpGg~~~~~~~~~~~~~~~~~~i~~~~~~g~pvlgiC~G~qlL~~~~~ 90 (194)
T cd01750 37 DADLIILPGSKDTIQDLAWLRKRGLAEAIKNYARAGGPVLGICGGYQMLGKYIV 90 (194)
T ss_pred CCCEEEECCCcchHHHHHHHHHcCHHHHHHHHHHCCCcEEEECHHHHHhhhhcc
Confidence 57999999997332111 123344554 5679999999999999999874
No 101
>cd03130 GATase1_CobB Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Cobyrinic Acid a,c-Diamide Synthase. CobB plays a role in cobalamin biosythesis catalyzing the conversion of cobyrinic acid to cobyrinic acid a,c-diamide. CobB belongs to the triad family of amidotransferases. Two of the three residues of the catalytic triad that are involved in glutamine binding, hydrolysis and transfer of the resulting ammonia to the acceptor substrate in other triad aminodotransferases are conserved in CobB.
Probab=98.38 E-value=2.8e-07 Score=68.44 Aligned_cols=47 Identities=17% Similarity=0.347 Sum_probs=33.2
Q ss_pred CCCEEEeCCCCCCCC-----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626 13 NPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 59 (174)
Q Consensus 13 ~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~ 59 (174)
++|+|||+||..... ....+.+.|++ ..+++|++|||.|+|+|++.+
T Consensus 40 ~~D~lilPGG~~~~~~~~L~~~~~~~~~i~~~~~~g~pilgICgG~qlL~~~~ 92 (198)
T cd03130 40 DADGLYLGGGYPELFAEELSANQSMRESIRAFAESGGPIYAECGGLMYLGESL 92 (198)
T ss_pred CCCEEEECCCchHHHHHHHHhhHHHHHHHHHHHHcCCCEEEEcccHHHHHHHh
Confidence 489999999853321 11123344554 567899999999999999875
No 102
>PF07685 GATase_3: CobB/CobQ-like glutamine amidotransferase domain; InterPro: IPR011698 This group of enzymes was suggested to be related to the MinD family of ATPases involved in regulation of cell division in bacteria and archaea []. Further sequence analysis suggests a model for the interaction of CobB and CobQ with their respective substrates []. CobB and CobQ were also found to contain unusual Triad family (class I) glutamine amidotransferase domains with conserved Cys and His residues, but lacking the Glu residue of the catalytic triad []. ; GO: 0003824 catalytic activity, 0009236 cobalamin biosynthetic process
Probab=98.35 E-value=1.5e-06 Score=62.25 Aligned_cols=48 Identities=19% Similarity=0.285 Sum_probs=37.4
Q ss_pred CCCEEEeCCCCCCCCCcc-----hhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626 13 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 60 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g 60 (174)
++|+|+|+||.-..++.. .+.+.|++ ...+.||+|||.|+|+|.+.+-
T Consensus 7 ~~D~i~lpGg~pe~~~~~l~~~~~~~~~I~~~~~~G~pi~aeCGG~~~Lg~~i~ 60 (158)
T PF07685_consen 7 DADGIYLPGGYPELFALELSRNRGLKEAIREAAEAGGPIYAECGGYQYLGESII 60 (158)
T ss_pred CCCEEEECCCcHHHHHHHHHHHhCHHHHHHHHHHcCCcEEEEchHHHHHHHHHh
Confidence 689999999966554332 24466665 6788999999999999999875
No 103
>TIGR00379 cobB cobyrinic acid a,c-diamide synthase. This model describes cobyrinic acid a,c-diamide synthase, the cobB (cbiA in Salmonella) protein of cobalamin biosynthesis. It is responsible for the amidation of carboxylic groups at positions A and C of either cobyrinic acid or hydrogenobrynic acid. NH(2) groups are provided by glutamine and one molecule of ATP hydrogenolyzed for each amidation.
Probab=98.08 E-value=3.1e-05 Score=64.38 Aligned_cols=47 Identities=17% Similarity=0.338 Sum_probs=34.9
Q ss_pred CCCEEEeCCCCCCCCCc-----chhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626 13 NPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 59 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~-----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~ 59 (174)
++|+|+|+||.....+. ..+.+.|++ ..++.||+|||.|+|+|++.+
T Consensus 286 ~~d~l~ipGG~~~~~~~~l~~~~~~~~~i~~~~~~G~pv~g~CgG~~~L~~~i 338 (449)
T TIGR00379 286 DVDAVYIGGGFPELFAEELSQNQALRDSIKTFIHQGLPIYGECGGLMYLSQSL 338 (449)
T ss_pred CCCEEEeCCcHHHHHHHHHHhhhHHHHHHHHHHHcCCCEEEEcHHHHHHHhhh
Confidence 68999999997433221 113455554 567899999999999999987
No 104
>cd01653 GATase1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group includes proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA. and, the A4 beta-galactosidase middle domain. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamine-depende
Probab=97.89 E-value=1.5e-05 Score=51.92 Aligned_cols=44 Identities=30% Similarity=0.676 Sum_probs=34.8
Q ss_pred cCCCEEEeCCCCCCCCCc---chhHHHHHH-cCCCCcEEeehHhHHHH
Q 030626 12 KNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 55 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~---~~~~~~i~~-~~~~~PilGIC~G~Qll 55 (174)
.++|+|+++||....... ...++.+.+ ..+++|++|+|.|+|++
T Consensus 45 ~~~d~lii~g~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~c~g~~~l 92 (115)
T cd01653 45 DDYDGLILPGGPGTPDDLARDEALLALLREAAAAGKPILGICLGAQLL 92 (115)
T ss_pred hccCEEEECCCCCchhhhccCHHHHHHHHHHHHcCCEEEEECchhHhH
Confidence 368999999998876654 445555655 56789999999999999
No 105
>PRK00784 cobyric acid synthase; Provisional
Probab=97.87 E-value=1.1e-05 Score=67.74 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=35.0
Q ss_pred CCCEEEeCCCCCCCCCcc-----hhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626 13 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 59 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~~~~PilGIC~G~Qll~~~~ 59 (174)
++|+|+|+||.....+.. .+.+.|++ ...++|+||||.|+|+|+..+
T Consensus 290 ~~d~lilpGg~~~~~~~~~~~~~~l~~~i~~~~~~g~pilg~C~G~~~L~~~~ 342 (488)
T PRK00784 290 DADLVILPGSKNTIADLAWLRESGWDEAIRAHARRGGPVLGICGGYQMLGRRI 342 (488)
T ss_pred cCCEEEECCccchHHHHHHHHHcCHHHHHHHHHHcCCeEEEECHHHHHHhhhc
Confidence 689999999975443211 13345554 567899999999999999987
No 106
>TIGR00313 cobQ cobyric acid synthase CobQ.
Probab=97.86 E-value=8.7e-06 Score=68.09 Aligned_cols=47 Identities=19% Similarity=0.269 Sum_probs=34.6
Q ss_pred CCCEEEeCCCCCCCCCcc-----hhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626 13 NPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 59 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~~~~PilGIC~G~Qll~~~~ 59 (174)
++|+|+|+||.....+.. .+.+.|++ ...+.||+|||.|+|+|++.+
T Consensus 284 ~~d~lilpGg~~~~~~~~~l~~~~~~~~i~~~~~~G~pvlgiCgG~q~Lg~~i 336 (475)
T TIGR00313 284 GCDAVIIPGSKSTIADLYALKQSGFAEEILDFAKEGGIVIGICGGYQMLGKEL 336 (475)
T ss_pred cCCEEEECCcchHHHHHHHHHhcChHHHHHHHHHcCCcEEEEcHHHHHhhhhh
Confidence 689999999974333321 13355554 567899999999999999976
No 107
>PRK11780 isoprenoid biosynthesis protein with amidotransferase-like domain; Provisional
Probab=97.83 E-value=3.7e-05 Score=57.88 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCC---C----------cchhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQ---D----------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 59 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~---~----------~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~ 59 (174)
.++++...+||+|+|+||.+... + ...+.+.+++ ..+++||.+||.|-++|+.++
T Consensus 77 ~l~~v~~~dyDalviPGG~g~~~~l~d~~~~~~~lr~~~~v~~lv~~f~~~gK~vaAIChgp~iL~~~~ 145 (217)
T PRK11780 77 DLAEADAEDFDALIVPGGFGAAKNLSNFAVKGAECTVNPDVKALVRAFHQAGKPIGFICIAPAMLPKIL 145 (217)
T ss_pred chhHCChhhCCEEEECCCCchhhhhhhhcccchhcccCHHHHHHHHHHHHCCCEEEEECHHHHHHHHHh
Confidence 34566556799999999976421 1 2334555655 678899999999999999876
No 108
>PRK01077 cobyrinic acid a,c-diamide synthase; Validated
Probab=97.75 E-value=3.5e-05 Score=64.13 Aligned_cols=48 Identities=17% Similarity=0.317 Sum_probs=35.6
Q ss_pred CCCEEEeCCCCCCCC-----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626 13 NPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 60 (174)
Q Consensus 13 ~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g 60 (174)
++|+|+|+||....+ ....+.+.+++ ..+++|++|||.|+|+|+..+-
T Consensus 287 ~~D~lilpGG~~~~~~~~l~~~~~~~~~i~~~~~~g~~i~aiCgG~~~L~~~i~ 340 (451)
T PRK01077 287 DCDGLYLGGGYPELFAAELAANTSMRASIRAAAAAGKPIYAECGGLMYLGESLE 340 (451)
T ss_pred CCCEEEeCCCchhhHHHHHhhCchhHHHHHHHHHcCCCEEEEcHHHHHHHhhhc
Confidence 689999999964322 11224455654 5688999999999999999873
No 109
>cd03128 GAT_1 Type 1 glutamine amidotransferase (GATase1)-like domain. Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to Class I glutamine amidotransferases, the intracellular PH1704 from Pyrococcus horikoshii, the C-terminal of the large catalase: Escherichia coli HP-II, Sinorhizobium meliloti Rm1021 ThuA, the A4 beta-galactosidase middle domain and peptidase E. The majority of proteins in this group have a reactive Cys found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For Class I glutamine amidotransferases proteins which transfer ammonia from the amide side chain of glutamine to an acceptor substrate, this Cys forms a Cys-His-Glu catalytic triad in the active site. Glutamine amidotransferases activity can be found in a range of biosynthetic enzymes included in this cd: glutamine amidotransferase, formylglycinamide ribonucleotide, GMP synthetase, anthranilate synthase component II, glutamin
Probab=97.70 E-value=2.9e-05 Score=48.24 Aligned_cols=45 Identities=29% Similarity=0.637 Sum_probs=34.2
Q ss_pred hcCCCEEEeCCCCCCCCCc---chhHHHHHH-cCCCCcEEeehHhHHHH
Q 030626 11 RKNPRGVLISPGPGAPQDS---GISLQTVLE-LGPTVPLFGVCMGLQCI 55 (174)
Q Consensus 11 ~~~~dgiii~GG~~~~~~~---~~~~~~i~~-~~~~~PilGIC~G~Qll 55 (174)
..++|+||++||....... ...++.+.+ ..++.|++|+|.|+|++
T Consensus 44 ~~~~~~lii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~~~~ 92 (92)
T cd03128 44 LDDYDGLILPGGPGTPDDLAWDEALLALLREAAAAGKPVLGICLGAQLL 92 (92)
T ss_pred cccCCEEEECCCCcchhhhccCHHHHHHHHHHHHcCCEEEEEecccccC
Confidence 3468999999998877654 444555544 56689999999999864
No 110
>PRK13896 cobyrinic acid a,c-diamide synthase; Provisional
Probab=97.64 E-value=3.2e-05 Score=63.84 Aligned_cols=47 Identities=21% Similarity=0.440 Sum_probs=35.0
Q ss_pred CCCEEEeCCCCCCCCCc----chhHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626 13 NPRGVLISPGPGAPQDS----GISLQTVLE-LGPTVPLFGVCMGLQCIGEAF 59 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~----~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~ 59 (174)
++|+|+|+||.-..++. ...++.+++ ...+.||+|||.|+|+|++.+
T Consensus 274 ~~D~l~lpGG~~e~~~~~L~~n~~~~~i~~~~~~G~pi~aeCGG~q~L~~~i 325 (433)
T PRK13896 274 DCDGVYLPGGYPELHADALADSPALDELADRAADGLPVLGECGGLMALAESL 325 (433)
T ss_pred CCCEEEeCCCchhhHHHHHHhCCcHHHHHHHHHCCCcEEEEehHHHHhhccc
Confidence 57999999998544331 112355554 578899999999999999887
No 111
>cd03169 GATase1_PfpI_1 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.59 E-value=6.8e-05 Score=54.63 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=34.6
Q ss_pred CCCEEEeCCCCCCCC--CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 13 NPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 13 ~~dgiii~GG~~~~~--~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
++|+|+++||++... ......+.+++ ..+++|+.|||.|.++|+.+
T Consensus 76 ~~D~liv~GG~~~~~~~~~~~~~~~l~~~~~~~k~i~~ic~G~~~La~a 124 (180)
T cd03169 76 DYDALVIPGGRAPEYLRLDEKVLAIVRHFAEANKPVAAICHGPQILAAA 124 (180)
T ss_pred HCCEEEEcCCCChhhhccCHHHHHHHHHHHHcCCEEEEECcHHHHHHHc
Confidence 589999999975322 22334455554 56789999999999999986
No 112
>KOG1907 consensus Phosphoribosylformylglycinamidine synthase [Nucleotide transport and metabolism]
Probab=97.58 E-value=0.00037 Score=61.20 Aligned_cols=134 Identities=17% Similarity=0.217 Sum_probs=77.4
Q ss_pred CCCEEEeCCCCCCCCCcc--h-h----------HHHHHH--cCCCCcEEeehHhHHHHHHH--hCCeeccCC--------
Q 030626 13 NPRGVLISPGPGAPQDSG--I-S----------LQTVLE--LGPTVPLFGVCMGLQCIGEA--FGGKIVRSP-------- 67 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~--~-~----------~~~i~~--~~~~~PilGIC~G~Qll~~~--~gg~v~~~~-------- 67 (174)
+|-||+.+||.....-.+ + | ...+.+ ..+..=-||||.|.|+|++. .+-.+...+
T Consensus 1103 ~frGlaf~GGFSYaDvLgSakGWAasil~ne~v~~QF~~F~~R~DtFslGiCNGCQlms~Lg~i~p~~~~~p~~~l~~Ne 1182 (1320)
T KOG1907|consen 1103 DFRGLAFCGGFSYADVLGSAKGWAASILFNESVRSQFEAFFNRQDTFSLGICNGCQLMSRLGWIGPEVGKWPDVFLDHNE 1182 (1320)
T ss_pred HhcceeeecCcchHhhhccccchhhheeeChhHHHHHHHHhcCCCceeeecccHhHHHHHhcccCccccCCCceeeeccc
Confidence 477999999976543211 1 1 122222 13455579999999999975 222222222
Q ss_pred CcccccccceeEeccCCCCCcccCCCC-ceeeccccccee---cc----cCCCCCCcEEEEEcCC-------------Cc
Q 030626 68 LGVMHGKSSLVYYDEKGEDGLLAGLSN-PFTAGRYHSLVI---EK----ESFPSDALEVTAWTED-------------GL 126 (174)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~H~~~v---~~----~~l~~~~~~~~a~s~~-------------~~ 126 (174)
.+...+.+..+++. ...+-++.++.. .+-++..|+.+= .. +.+..+++..+-+.+| +.
T Consensus 1183 s~rfE~r~~~vkI~-~~~SIml~gM~gs~LgvwvAHGEGRa~f~~e~~~e~~~~~gl~~iryvdd~g~~te~yPfNpNGS 1261 (1320)
T KOG1907|consen 1183 SGRFECRFGMVKIE-SNVSIMLSGMAGSVLGVWVAHGEGRATFRSEQNLEHLKKEGLVCIRYVDDYGNVTELYPFNPNGS 1261 (1320)
T ss_pred ccceeeeEEEEEeC-CCchhhhccccCCceeeEEEecccceecCcHHHHHHHhhcCeeEEEEecCCCCEeeecccCCCCC
Confidence 22223334444444 234445666653 466777887532 11 1234456666655432 22
Q ss_pred ---eEEEeeCCCCceEEEecCCCCc
Q 030626 127 ---IMAARHKKYKHLQGVQFHPESI 148 (174)
Q Consensus 127 ---i~a~~~~~~~~~~g~QfHPE~~ 148 (174)
|++++..++. .++++.||||.
T Consensus 1262 ~~gIAgicSpdGR-hLAMMPHpER~ 1285 (1320)
T KOG1907|consen 1262 PDGIAGICSPDGR-HLAMMPHPERV 1285 (1320)
T ss_pred cccceeeeCCCCC-eeeccCCchhe
Confidence 8899999876 99999999985
No 113
>cd03133 GATase1_ES1 Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. Type 1 glutamine amidotransferase (GATase1)-like domain found in zebrafish ES1. This group includes, proteins similar to ES1, Escherichia coli enhancing lycopene biosynthesis protein 2, Azospirillum brasilense iaaC and, human HES1. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. Zebrafish ES1 is expressed specifically in adult photoreceptor cells and appears to be a cytoplasmic protein. A. brasilense iaaC is involved in controlling IAA biosynthesis.
Probab=97.55 E-value=0.00016 Score=54.20 Aligned_cols=55 Identities=18% Similarity=0.249 Sum_probs=39.4
Q ss_pred HHHHHhcCCCEEEeCCCCCCC---CC----------cchhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626 6 LVSYCRKNPRGVLISPGPGAP---QD----------SGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 60 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~---~~----------~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g 60 (174)
++++...+||+|+|+||.+.. .+ ...+.+.+++ ..+++|+.+||.|-++|+.+.+
T Consensus 75 l~ev~~~dyDalviPGG~~~~~~l~D~~~~~~~~~~~~~l~~lv~~f~~~gK~VaAIChgp~~L~~~~~ 143 (213)
T cd03133 75 LAKLKAADFDALIFPGGFGAAKNLSDFAVKGADCTVNPEVERLVREFHQAGKPIGAICIAPALAAKILG 143 (213)
T ss_pred hHHCCHhHCCEEEECCCCchhhhhhhhcccccccccCHHHHHHHHHHHHCCCeEEEECHHHHHHHHHhc
Confidence 345444469999999997632 11 2335555655 6788999999999999998764
No 114
>cd03144 GATase1_ScBLP_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Saccharomyces cerevisiae biotin-apoprotein ligase (ScBLP). Biotin-apoprotein ligase modifies proteins by covalently attaching biotin. ScBLP is known to biotinylate acety-CoA carboxylase and pyruvate carboxylase. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, the Cys residue found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow in a typical GATase1 domain is conserved.
Probab=97.54 E-value=5.1e-05 Score=51.22 Aligned_cols=42 Identities=12% Similarity=0.226 Sum_probs=28.9
Q ss_pred cCCCEEEeCCCCCCCCCcchh-----HHHHHH-cCCCCcEEeehHhHHHH
Q 030626 12 KNPRGVLISPGPGAPQDSGIS-----LQTVLE-LGPTVPLFGVCMGLQCI 55 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~~~~-----~~~i~~-~~~~~PilGIC~G~Qll 55 (174)
.++|.||+|||.... .... .+.|++ ..++.|+||||+|.-+.
T Consensus 43 ~~ad~lVlPGGa~~~--~~~~L~~~g~~~i~~~v~~g~p~LGIClGAy~a 90 (114)
T cd03144 43 SKTALLVVPGGADLP--YCRALNGKGNRRIRNFVRNGGNYLGICAGAYLA 90 (114)
T ss_pred hCCCEEEECCCChHH--HHHHHHhhCcHHHHHHHHCCCcEEEEecCccce
Confidence 368999999854432 2111 344554 56789999999998776
No 115
>TIGR01382 PfpI intracellular protease, PfpI family. The member of this family from Pyrococcus horikoshii has been solved to 2 Angstrom resolution. It is an ATP-independent intracellular protease that crystallizes as a hexameric ring. Cys-101 is proposed as the active site residue in a catalytic triad with the adjacent His-102 and a Glu residue from an adjacent monomer. A member of this family from Bacillus subtilis, GSP18, has been shown to be expressed in response to several forms of stress. A role in the degradation of small peptides has been suggested. A closely related family consists of the thiamine biosynthesis protein ThiJ and its homologs.
Probab=97.54 E-value=7.5e-05 Score=53.54 Aligned_cols=52 Identities=17% Similarity=0.203 Sum_probs=36.7
Q ss_pred HHHHhcCCCEEEeCCCCCCCC--CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 7 VSYCRKNPRGVLISPGPGAPQ--DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~--~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
+++...++|+|+++||++... ......+.+++ ..+++|+.+||.|.++|+.+
T Consensus 54 ~~~~~~~~D~vvv~Gg~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 108 (166)
T TIGR01382 54 DEVNPEEYDALVIPGGRAPEYLRLNNKAVRLVREFVEKGKPVAAICHGPQLLISA 108 (166)
T ss_pred hhCCHHHCcEEEECCCCCHHHhccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhc
Confidence 333333589999999976321 22344555655 56789999999999999974
No 116
>cd03147 GATase1_Ydr533c_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in Saccharomyces cerevisiae Ydr533c protein. This group includes proteins similar to S. cerevisiae Ydr533c. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. The catalytic triad typical of GATase1domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and Glu residue form a different catalytic triad from the typical GATase1domain. Ydr533c protein is a homodimer.
Probab=97.45 E-value=0.00019 Score=54.57 Aligned_cols=52 Identities=10% Similarity=0.054 Sum_probs=38.7
Q ss_pred HHHHhcCCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 7 VSYCRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
+++...+||+|+|+||.+... +...+.+.+++ ..+++||-.||.|-++|+.+
T Consensus 88 ~dv~~~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~iaAIChgp~~L~~a 143 (231)
T cd03147 88 DEVNPDDYGIFFVAGGHGTLFDFPHATNLQKIAQQIYANGGVVAAVCHGPAILANL 143 (231)
T ss_pred hHCCHhhCcEEEECCCCchhhhcccCHHHHHHHHHHHHcCCEEEEEChHHHHHHhh
Confidence 444445799999999977433 33345566665 57789999999999999876
No 117
>cd03134 GATase1_PfpI_like A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus. This group includes proteins similar to PfpI from P. furiosus. and PH1704 from Pyrococcus horikoshii. These enzymes are ATP-independent intracellular proteases and may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For PH1704, it is believed that this Cys together with a different His in one monomer and Glu (from an adjacent monomer) forms a different catalytic triad from the typical GATase1domain. PfpI is homooligomeric. Protease activity is only found for oligomeric forms of PH1704.
Probab=97.43 E-value=0.00017 Score=51.56 Aligned_cols=47 Identities=15% Similarity=0.213 Sum_probs=35.1
Q ss_pred cCCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 12 KNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 12 ~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
.++|+|+++||++.. .+...+.+.+++ ..+++|+.|||.|.++|+.+
T Consensus 61 ~~~D~lvvpGG~~~~~~~~~~~~~~~l~~~~~~~~~i~~ic~G~~~La~a 110 (165)
T cd03134 61 DDYDALVIPGGTNPDKLRRDPDAVAFVRAFAEAGKPVAAICHGPWVLISA 110 (165)
T ss_pred HHCCEEEECCCCChhhhccCHHHHHHHHHHHHcCCeEEEEchHHHHHHhc
Confidence 358999999998432 123445566654 57889999999999999974
No 118
>COG1492 CobQ Cobyric acid synthase [Coenzyme metabolism]
Probab=97.39 E-value=7.9e-05 Score=61.65 Aligned_cols=47 Identities=21% Similarity=0.345 Sum_probs=31.6
Q ss_pred CCCEEEeCCCCCCCCCcch-----hHHHHHH-cCCCCcEEeehHhHHHHHHHh
Q 030626 13 NPRGVLISPGPGAPQDSGI-----SLQTVLE-LGPTVPLFGVCMGLQCIGEAF 59 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~-----~~~~i~~-~~~~~PilGIC~G~Qll~~~~ 59 (174)
++|.|||+|......|... +.+.+.+ ...+.||+|||.|+|+|...+
T Consensus 290 ~~dlvIlPGsk~t~~DL~~lr~~g~d~~i~~~~~~~~~viGICGG~QmLG~~i 342 (486)
T COG1492 290 DADLVILPGSKNTIADLKILREGGMDEKILEYARKGGDVIGICGGYQMLGRRL 342 (486)
T ss_pred CCCEEEeCCCcccHHHHHHHHHcCHHHHHHHHHhCCCCEEEEcchHHhhhhhh
Confidence 3788887766444333211 2344555 556899999999999998764
No 119
>cd03140 GATase1_PfpI_3 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.23 E-value=0.00049 Score=49.67 Aligned_cols=47 Identities=13% Similarity=0.159 Sum_probs=35.2
Q ss_pred cCCCEEEeCCCCCCC-CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 12 KNPRGVLISPGPGAP-QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 12 ~~~dgiii~GG~~~~-~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
.++|.|+|+||.... .....+.+.+++ ..++.++.+||-|.++|+.+
T Consensus 59 ~~~D~l~I~Gg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 107 (170)
T cd03140 59 EDYDLLILPGGDSWDNPEAPDLAGLVRQALKQGKPVAAICGATLALARA 107 (170)
T ss_pred hHccEEEEcCCcccccCCcHHHHHHHHHHHHcCCEEEEEChHHHHHHHC
Confidence 368999999997532 223345566665 56789999999999999985
No 120
>PF01965 DJ-1_PfpI: DJ-1/PfpI family; InterPro: IPR002818 This signature defines a diverse group of protein families which include proteins involved in RNA-protein interaction regulation, thiamine biosynthesis, Ras-related signal transduction, and those with protease activity. Examples of annotation are: Catalase A, 1.11.1.6 from EC Catalase II ES-1 DJ-1 RNA-binding protein, regulatory subunit [] protease I FGAM I, 6.3.5.3 from EC Putative/Intracellular protease Chaperone hchA Transcriptional regulator, AraC family THiJ/PfpI family [,] ; PDB: 2FEX_C 1OY1_B 1VHQ_B 3UK7_B 1OI4_A 1QVW_B 1QVV_D 1QVZ_A 1RW7_A 1G2I_C ....
Probab=97.15 E-value=8.1e-05 Score=52.48 Aligned_cols=53 Identities=21% Similarity=0.328 Sum_probs=37.8
Q ss_pred HHHHHhcCCCEEEeCCCCCCCC----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
++++...+||+|+|+||.+... +...+.+.+++ ...++||.+||.|-.+|+.+
T Consensus 30 l~~~~~~~yDalilpGG~~~~~~l~~~~~~l~~~~~~~~~~~k~iaaIC~g~~~L~~~ 87 (147)
T PF01965_consen 30 LDEIDPSDYDALILPGGHGGADDLRTDSKDLLELLKEFYEAGKPIAAICHGPAVLAAA 87 (147)
T ss_dssp GGGHTGGGESEEEEE-BTHHHHHHTTCHHHHHHHHHHHHHTT-EEEEETTCHHHHHHT
T ss_pred HHHCChhhCCEEEECCCCchhhhHhhHHHHHHHHHHHHHHcCCeEEecCCCcchhhcc
Confidence 4556566799999999988432 22455666665 56789999999999888875
No 121
>cd03141 GATase1_Hsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein. Type 1 glutamine amidotransferase (GATase1)-like domain found in proteins similar to Escherichia coli Hsp31 protein (EcHsp31). This group includes EcHsp31 and Saccharomyces cerevisiae Ydr533c protein. EcHsp31 has chaperone activity. Ydr533c is upregulated in response to various stress conditions along with the heat shock family. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1 domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. For EcHsp31, this Cys together with a different His and, an Asp (rather than a Glu) residue form a different
Probab=97.08 E-value=0.0007 Score=51.09 Aligned_cols=52 Identities=15% Similarity=0.128 Sum_probs=38.2
Q ss_pred HHHHhcCCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 7 VSYCRKNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
+++...++|+|+|+||.+... +...+.+.+++ ..++++|.+||-|-.+|+.+
T Consensus 84 ~~~~~~~~dal~ipGG~~~~~~l~~~~~l~~~l~~~~~~~k~iaaIC~g~~~La~a 139 (221)
T cd03141 84 SDVDPSDYDAIFIPGGHGPMFDLPDNPDLQDLLREFYENGKVVAAVCHGPAALLNV 139 (221)
T ss_pred hHCCHhHceEEEECCCcccccccccCHHHHHHHHHHHHcCCEEEEEcchHHHHHhc
Confidence 444444689999999986432 33445566655 56789999999999999975
No 122
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=97.08 E-value=0.00053 Score=51.43 Aligned_cols=49 Identities=14% Similarity=0.086 Sum_probs=33.8
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcch------hHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGI------SLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~------~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
.+.|. ++|+|+++|| +...... +.+.+++ ..++.|++|||.|+|++...
T Consensus 75 ~~~l~--~ad~I~l~GG--~~~~~~~~l~~~~l~~~l~~~~~~g~~i~G~SAGa~i~~~~ 130 (212)
T cd03146 75 LDALL--EADVIYVGGG--NTFNLLAQWREHGLDAILKAALERGVVYIGWSAGSNCWFPS 130 (212)
T ss_pred HHHHh--cCCEEEECCc--hHHHHHHHHHHcCHHHHHHHHHHCCCEEEEECHhHHhhCCC
Confidence 44443 6899999996 4432222 2344444 56789999999999999975
No 123
>COG0693 ThiJ Putative intracellular protease/amidase [General function prediction only]
Probab=97.03 E-value=0.00071 Score=49.54 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=36.8
Q ss_pred cCCCEEEeCCC-CCCCCCc--chhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 12 KNPRGVLISPG-PGAPQDS--GISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 12 ~~~dgiii~GG-~~~~~~~--~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
.+||+|+++|| .+.-... ..+++.+++ ...++||..||.|-++|+.+
T Consensus 65 ~~ydal~ipGG~~~~~~~~~~~~~~~~v~~~~~~~k~vaaIC~g~~~L~~a 115 (188)
T COG0693 65 ADYDALVIPGGDHGPEYLRPDPDLLAFVRDFYANGKPVAAICHGPAVLAAA 115 (188)
T ss_pred hHCCEEEECCCccchhhccCcHHHHHHHHHHHHcCCEEEEEChhHHHHhcc
Confidence 47999999999 6654433 356666665 56799999999999999965
No 124
>cd03137 GATase1_AraC_1 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=97.03 E-value=0.0014 Score=47.85 Aligned_cols=47 Identities=19% Similarity=0.301 Sum_probs=36.4
Q ss_pred cCCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 12 KNPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 12 ~~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
.++|.|+|+||.+.. .+...+.+.+++ ..++++|.+||-|.++|+.+
T Consensus 63 ~~~D~liipGg~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 112 (187)
T cd03137 63 AAADTVIVPGGPDVDGRPPPPALLAALRRAAARGARVASVCTGAFVLAEA 112 (187)
T ss_pred CCCCEEEECCCcccccccCCHHHHHHHHHHHhcCCEEEEECHHHHHHHHc
Confidence 368999999997654 334455666665 56789999999999999975
No 125
>cd03135 GATase1_DJ-1 Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. Type 1 glutamine amidotransferase (GATase1)-like domain found in Human DJ-1. DJ-1 is involved in multiple physiological processes including cancer, Parkinson's disease and male fertility. It is unclear how DJ-1 functions in these. DJ-1 has been shown to possess chaperone activity. DJ-1 is preferentially expressed in the testis and moderately in other tissues; it is induced together with genes involved in oxidative stress response. The Drosophila homologue (DJ-1A) plays an essential role in oxidative stress response and neuronal maintenance. Inhibition of DJ-1A function through RNAi, results in the cellular accumulation of reactive oxygen species, organismal hypersensitivity to oxidative stress, and dysfunction and degeneration of dopaminergic and photoreceptor neurons. DJ-1 has lacks enzymatic activity and the catalytic triad of typical GATase1 domains, however it does contain the highly
Probab=96.89 E-value=0.0013 Score=46.80 Aligned_cols=47 Identities=13% Similarity=0.210 Sum_probs=35.4
Q ss_pred cCCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 12 KNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 12 ~~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
.++|.|+|+||++.. .+...+.+.+++ ..+++++.+||-|..+|+.+
T Consensus 59 ~~~D~liipGg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~g~~~La~a 109 (163)
T cd03135 59 DDYDAIVIPGGLPGAQNLADNEKLIKLLKEFNAKGKLIAAICAAPAVLAKA 109 (163)
T ss_pred CCCCEEEECCCCchHHHHHhCHHHHHHHHHHHHcCCEEEEEchhHHHHHHc
Confidence 478999999997322 233445566654 56789999999999999986
No 126
>cd03132 GATase1_catalase Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Type 1 glutamine amidotransferase (GATase1)-like domain found in at the C-terminal of several large catalases. Catalase catalyzes the dismutation of hydrogen peroxide (H2O2) to water and oxygen. This group includes the large catalases: Neurospora crassa Catalase-1 and Catalase-3 and, Escherichia coli HP-II. This GATase1-like domain has an essential role in HP-II catalase activity. However, it lacks enzymatic activity and the catalytic triad typical of GATase1 domains. Catalase-1 and -3 are homotetrameric, HP-II is homohexameric. It has been proposed that this domain may facilitate the folding and oligomerization process. The interface between this GATase1-like domain of HP-II and the core of the subunit forms part of a channel which provides access to the deeply buried catalase active sites of HPII. Catalase-1 is associated with non-growing cells; C
Probab=96.79 E-value=0.0018 Score=45.22 Aligned_cols=46 Identities=26% Similarity=0.255 Sum_probs=35.2
Q ss_pred CCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 13 NPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 13 ~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
++|+|+|+||.+.. .+...+.+.+++ ..+++|+.+||-|-.+|+.+
T Consensus 62 ~~D~liVpGg~~~~~~~~~~~~l~~~l~~~~~~~~~I~aic~G~~~La~a 111 (142)
T cd03132 62 LFDAVVVPGGAEAAFALAPSGRALHFVTEAFKHGKPIGAVGEGSDLLEAA 111 (142)
T ss_pred hcCEEEECCCccCHHHHccChHHHHHHHHHHhcCCeEEEcCchHHHHHHc
Confidence 58999999997643 233445566655 56789999999999999974
No 127
>PRK04155 chaperone protein HchA; Provisional
Probab=96.69 E-value=0.0024 Score=50.13 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=35.7
Q ss_pred hcCCCEEEeCCCCCCCCC---cchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 11 RKNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 11 ~~~~dgiii~GG~~~~~~---~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
..+||+|+|+||.+...+ ...+.+.++. ..+++||..||.|-++|..+
T Consensus 145 ~~dYDaV~iPGG~g~~~dL~~~~~l~~ll~~~~~~~K~VaAICHGPa~Ll~a 196 (287)
T PRK04155 145 DSDYAAVFIPGGHGALIGLPESEDVAAALQWALDNDRFIITLCHGPAALLAA 196 (287)
T ss_pred cccccEEEECCCCchHHHHhhCHHHHHHHHHHHHcCCEEEEEChHHHHHHHc
Confidence 357999999999876442 3334455554 67889999999999877753
No 128
>TIGR01383 not_thiJ DJ-1 family protein. This model represents the DJ-1 clade of the so-called ThiJ/PfpI family of proteins. PfpI, represented by a distinct model, is a putative intracellular cysteine protease. DJ-1 is described as an oncogene that acts cooperatively with H-Ras. Many members of the DJ-1 clade are annotated (apparently incorrectly) as ThiJ, a protein of thiamine biosynthesis. However, published reports of ThiJ activity and identification of a ThiJ/ThiD bifunctional protein describe an unrelated locus mapping near ThiM, rather than the DJ-1 homolog of E. coli. The ThiJ designation for this family may be spurious; the cited paper PubMed:8885414 refers to a locus near thiD and thiM in E. coli, unlike the gene represented here. Current public annotation reflects ThiJ/ThiD bifunctional activity, apparently a property of ThiD and not of this locus.
Probab=96.64 E-value=0.0024 Score=46.22 Aligned_cols=47 Identities=11% Similarity=0.169 Sum_probs=35.1
Q ss_pred cCCCEEEeCCCCCCC---CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 12 KNPRGVLISPGPGAP---QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 12 ~~~dgiii~GG~~~~---~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
.++|.|+|+||.... .+...+.+.+++ ..++++|.+||-|..+|+.+
T Consensus 62 ~~~D~l~v~Gg~~~~~~~~~~~~l~~~l~~~~~~~~~i~~ic~G~~~La~a 112 (179)
T TIGR01383 62 EEFDAIVLPGGMPGAENLRNSKLLLNILKKQESKGKLVAAICAAPAVLLAA 112 (179)
T ss_pred ccCCEEEECCCchHHHHHhhCHHHHHHHHHHHHCCCEEEEEChhHHHHHhc
Confidence 468999999986422 233445566665 56789999999999999985
No 129
>cd03138 GATase1_AraC_2 AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having a Type 1 glutamine amidotransferase (GATase1)-like domain. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.60 E-value=0.0037 Score=45.92 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=34.8
Q ss_pred CCCEEEeCCCCCCCC-----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 13 NPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 13 ~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
++|.|+|+||.+... ....+++.+++ ..++.+|.+||-|..+|+.+
T Consensus 69 ~~D~liIpgg~~~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 120 (195)
T cd03138 69 APDLVIVPGLGGDPDELLLADNPALIAWLRRQHANGATVAAACTGVFLLAEA 120 (195)
T ss_pred CCCEEEECCCcCCchhhhhhccHHHHHHHHHHHHcCCEEEEecHHHHHHHHc
Confidence 689999999865432 23445566665 56789999999999999974
No 130
>PRK11574 oxidative-stress-resistance chaperone; Provisional
Probab=96.59 E-value=0.0043 Score=45.73 Aligned_cols=46 Identities=13% Similarity=0.151 Sum_probs=33.3
Q ss_pred cCCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHH
Q 030626 12 KNPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGE 57 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~ 57 (174)
.++|.|+|+||.+... +...+.+.+++ ..++++|.+||-|..+|..
T Consensus 65 ~~~D~l~ipGG~~~~~~~~~~~~l~~~L~~~~~~g~~v~aic~G~~~ll~ 114 (196)
T PRK11574 65 GDFDVIVLPGGIKGAECFRDSPLLVETVRQFHRSGRIVAAICAAPATVLV 114 (196)
T ss_pred CCCCEEEECCCCchhhhhhhCHHHHHHHHHHHHCCCEEEEECHhHHHHHH
Confidence 3689999999975332 23345566655 5688999999999997654
No 131
>PF09825 BPL_N: Biotin-protein ligase, N terminal; InterPro: IPR019197 The function of this structural domain is unknown. It is found to the N terminus of the biotin protein ligase catalytic domain []. Biotin protein ligase carries out the post-translational modification of specific proteins by the attachment of biotin. It acts on various carboxylases such as acetyl-CoA-carboxylase, pyruvate carboxylase, propionyl CoA carboxylase, and 3-methylcrotonyl CoA carboxylase.
Probab=96.56 E-value=0.034 Score=45.11 Aligned_cols=45 Identities=11% Similarity=0.183 Sum_probs=34.5
Q ss_pred CCCEEEeCCCCCCCCCcc---hhHHHHHH-cCCCCcEEeehHhHHHHHH
Q 030626 13 NPRGVLISPGPGAPQDSG---ISLQTVLE-LGPTVPLFGVCMGLQCIGE 57 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~---~~~~~i~~-~~~~~PilGIC~G~Qll~~ 57 (174)
+++.+|++||...++... .-.+.|++ +.++--.||||.|.-+-+.
T Consensus 49 ~~~LlV~PGG~d~~y~~~l~~~g~~~Ir~fV~~GG~YlGiCAGaY~as~ 97 (367)
T PF09825_consen 49 KCALLVMPGGADLPYCRSLNGEGNRRIRQFVENGGGYLGICAGAYYASS 97 (367)
T ss_pred CCcEEEECCCcchHHHHhhChHHHHHHHHHHHcCCcEEEECcchhhhcc
Confidence 589999999998766432 22466776 6778999999999988765
No 132
>cd03148 GATase1_EcHsp31_like Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). Type 1 glutamine amidotransferase (GATase1)-like domain found in Escherichia coli Hsp31 protein (EcHsp31). This group includes proteins similar to EcHsp31. EcHsp31 has chaperone activity. EcHsp31 coordinates a metal ion using a 2-His-1-carboxylate motif present in various ions that use iron as a cofactor such as Carboxypeptidase A. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with a typical GATase1domain, a reactive Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow. This Cys together with a different His and, an Asp (rather than a Glu) residue form a different catalytic triad from the typical GATase1 domain. EcHsp31 is a homodimer.
Probab=96.56 E-value=0.0041 Score=47.32 Aligned_cols=47 Identities=19% Similarity=0.145 Sum_probs=35.2
Q ss_pred cCCCEEEeCCCCCCCCC---cchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 12 KNPRGVLISPGPGAPQD---SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~---~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
.+||+|+|+||.+...+ ...+.+.+++ ..+++||-.||-|-++|..+
T Consensus 95 ~dYDav~iPGG~g~~~dl~~~~~l~~ll~~f~~~gK~VaAICHGp~~L~~a 145 (232)
T cd03148 95 SEYAAVFIPGGHGALIGIPESQDVAAALQWAIKNDRFVITLCHGPAAFLAA 145 (232)
T ss_pred hhceEEEECCCCCChhhcccCHHHHHHHHHHHHcCCEEEEECcHHHHHHhc
Confidence 47999999999775433 3334455554 67889999999999987754
No 133
>PF13278 DUF4066: Putative amidotransferase; PDB: 3BHN_A 3MGK_B 3NOV_A 3NON_B 3NOO_B 3NOQ_A 3NOR_A 3GRA_A 3EWN_A 3ER6_C ....
Probab=96.49 E-value=0.0031 Score=45.12 Aligned_cols=47 Identities=19% Similarity=0.298 Sum_probs=35.2
Q ss_pred cCCCEEEeCCCCC--CCCCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 12 KNPRGVLISPGPG--APQDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 12 ~~~dgiii~GG~~--~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
..+|.|||+||+. .......+++.+++ ..++.++.+||-|..+|+++
T Consensus 60 ~~~D~lvvpg~~~~~~~~~~~~l~~~l~~~~~~~~~i~aic~G~~~La~a 109 (166)
T PF13278_consen 60 PDFDILVVPGGPGFDAAAKDPALLDWLRQQHAQGTYIAAICTGALLLAEA 109 (166)
T ss_dssp SCCSEEEEE-STTHHHHTT-HHHHHHHHHHHCCTSEEEEETTHHHHHHHT
T ss_pred ccCCEEEeCCCCCchhcccCHHHHHHhhhhhccceEEeeeehHHHHHhhh
Confidence 4689999999988 22333455666655 56789999999999999986
No 134
>cd03139 GATase1_PfpI_2 Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. Type 1 glutamine amidotransferase (GATase1)-like domain found in a subgroup of proteins similar to PfpI from Pyrococcus furiosus. PfpI is an ATP-independent intracellular proteases which may hydrolyze small peptides to provide a nutritional source. Only Cys of the catalytic triad typical of GATase1 domains is conserved in this group. This Cys residue is found in the sharp turn between a beta strand and an alpha helix termed the nucleophile elbow.
Probab=96.40 E-value=0.007 Score=43.88 Aligned_cols=46 Identities=17% Similarity=0.237 Sum_probs=35.2
Q ss_pred CCCEEEeCCCCCCC--CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 13 NPRGVLISPGPGAP--QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 13 ~~dgiii~GG~~~~--~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
.+|+|+|+||.+.. .....+.+.+++ ..+++++.+||-|..+|+.+
T Consensus 62 ~~D~lvipgg~~~~~~~~~~~~~~~l~~~~~~~k~i~aic~g~~~La~a 110 (183)
T cd03139 62 DLDVLLVPGGGGTRALVNDPALLDFIRRQAARAKYVTSVCTGALLLAAA 110 (183)
T ss_pred CCCEEEECCCcchhhhccCHHHHHHHHHhcccCCEEEEEchHHHHHHhc
Confidence 68999999997543 233445566665 67889999999999999874
No 135
>COG3442 Predicted glutamine amidotransferase [General function prediction only]
Probab=96.35 E-value=0.00076 Score=50.22 Aligned_cols=51 Identities=16% Similarity=0.279 Sum_probs=32.7
Q ss_pred HHHhcCCCEEEeCCCCCCCC-----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 8 SYCRKNPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 8 ~~~~~~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
......+|.+++.||..... +...-...+++ +..++|+|.||.|.|+|..+
T Consensus 47 ~~~~~~~Dl~~~GGgqD~eQ~i~t~d~~~k~~~l~~~i~~g~p~laiCgg~QlLG~y 103 (250)
T COG3442 47 TFPDDSYDLYFLGGGQDYEQEIATRDLLTKKEGLKDAIENGKPVLAICGGYQLLGQY 103 (250)
T ss_pred CCCcccccEEEecCchHHHHHHHhhhhccccHHHHHHHhcCCcEEEEccchhhccce
Confidence 33444678888777654321 11111233443 78899999999999999875
No 136
>cd03136 GATase1_AraC_ArgR_like AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. A subgroup of AraC transcriptional regulators having an N-terminal Type 1 glutamine amidotransferase (GATase1)-like domain. This group contains proteins similar to the Pseudomonas aeruginosa ArgR regulator. ArgR functions in the control of expression of certain genes of arginine biosynthesis and catabolism. AraC regulators are defined by a AraC-type helix-turn-helix DNA binding domain at their C-terminal. AraC family transcriptional regulators are widespread among bacteria and are involved in regulating diverse and important biological functions, including carbon metabolism, stress responses and virulence in different microorganisms. The catalytic triad typical of GATase1 domains is not conserved in this GATase1-like domain. However, in common with typical GATase1domains a reactive cys residue is found in some sequences in the sharp turn betwee
Probab=95.83 E-value=0.018 Score=41.91 Aligned_cols=47 Identities=19% Similarity=0.116 Sum_probs=35.0
Q ss_pred cCCCEEEeCCCCCCCC-CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 12 KNPRGVLISPGPGAPQ-DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~-~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
.++|.|+|+||.+... .....++.+++ ..+++.|.+||-|..+|+.+
T Consensus 63 ~~~D~liipgg~~~~~~~~~~~~~~l~~~~~~~~~i~aic~g~~~La~a 111 (185)
T cd03136 63 PPLDYLFVVGGLGARRAVTPALLAWLRRAARRGVALGGIDTGAFLLARA 111 (185)
T ss_pred CCCCEEEEeCCCCccccCCHHHHHHHHHHHhcCCEEEEEcHHHHHHHHc
Confidence 3689999999865432 23345566655 56789999999999999974
No 137
>PRK09393 ftrA transcriptional activator FtrA; Provisional
Probab=95.29 E-value=0.036 Score=44.05 Aligned_cols=46 Identities=15% Similarity=0.235 Sum_probs=33.9
Q ss_pred CCCEEEeCCCCCCCCC-cchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 13 NPRGVLISPGPGAPQD-SGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~-~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
++|.|||+||.+.... ...+.+.+++ ..++.+|.|||-|.-+|+.+
T Consensus 75 ~~D~livpGg~~~~~~~~~~l~~~l~~~~~~~~~i~aic~g~~~La~a 122 (322)
T PRK09393 75 RADTIVIPGWRGPDAPVPEPLLEALRAAHARGARLCSICSGVFVLAAA 122 (322)
T ss_pred CCCEEEECCCCcccccCCHHHHHHHHHHHHcCCEEEEEcHHHHHHHhc
Confidence 6899999998653322 3345555654 45779999999999999875
No 138
>KOG2764 consensus Putative transcriptional regulator DJ-1 [General function prediction only; Defense mechanisms]
Probab=94.17 E-value=0.075 Score=40.09 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=32.9
Q ss_pred HHHhcCCCEEEeCCC-CCCCCC--cchhHHHHHH-cCCCCcEEeehHhHHHHH
Q 030626 8 SYCRKNPRGVLISPG-PGAPQD--SGISLQTVLE-LGPTVPLFGVCMGLQCIG 56 (174)
Q Consensus 8 ~~~~~~~dgiii~GG-~~~~~~--~~~~~~~i~~-~~~~~PilGIC~G~Qll~ 56 (174)
+..+.+||.|||||| +|...- ....-+.+++ ...++.+..||.|=-++.
T Consensus 62 D~~~~~yDviilPGG~~g~e~L~~~~~v~~lvK~q~~~gkLIaaICaap~~al 114 (247)
T KOG2764|consen 62 DVVDSKYDVIILPGGLPGAETLSECEKVVDLVKEQAESGKLIAAICAAPLTAL 114 (247)
T ss_pred hhccccccEEEecCCchhhhhhhhcHHHHHHHHHHHhcCCeEEEeecchHHHH
Confidence 333468999999999 886542 2233344443 567899999999864443
No 139
>PRK11249 katE hydroperoxidase II; Provisional
Probab=93.06 E-value=0.085 Score=46.59 Aligned_cols=46 Identities=15% Similarity=0.079 Sum_probs=34.9
Q ss_pred CCCEEEeCCCCCCCC---CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 13 NPRGVLISPGPGAPQ---DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 13 ~~dgiii~GG~~~~~---~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
.+|+|+|+||..... .....+..|++ ..+.++|.+||-|.++|+.+
T Consensus 658 ~FDAVvVPGG~~~~~~L~~d~~al~fL~eaykHgK~IAAiCaG~~LLaaA 707 (752)
T PRK11249 658 TFDAVIVPGGKANIADLADNGDARYYLLEAYKHLKPIALAGDARKLKAAL 707 (752)
T ss_pred CCCEEEECCCchhHHHHhhCHHHHHHHHHHHHcCCEEEEeCccHHHHHhc
Confidence 589999999865432 23345555655 67789999999999999964
No 140
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=92.61 E-value=0.079 Score=40.37 Aligned_cols=48 Identities=17% Similarity=0.234 Sum_probs=33.2
Q ss_pred CCCEEEeCCCCCCCC----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHHhC
Q 030626 13 NPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAFG 60 (174)
Q Consensus 13 ~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~g 60 (174)
+.|+|+++||..... ....+.+.|++ +.+++|++|+|.|+-+++....
T Consensus 79 ~ad~I~v~GGnt~~l~~~l~~~gl~~~l~~~~~~G~~~~G~SAGAii~~~~i~ 131 (233)
T PRK05282 79 NAEAIFVGGGNTFQLLKQLYERGLLAPIREAVKNGTPYIGWSAGANVAGPTIR 131 (233)
T ss_pred cCCEEEECCccHHHHHHHHHHCCcHHHHHHHHHCCCEEEEECHHHHhhhccce
Confidence 679999999955321 11123344543 6778999999999988877554
No 141
>COG4090 Uncharacterized protein conserved in archaea [Function unknown]
Probab=92.04 E-value=0.21 Score=34.32 Aligned_cols=52 Identities=23% Similarity=0.183 Sum_probs=31.4
Q ss_pred HHHhcC-CCEEEeCCCCCCCCCc--chhHHHHHHcCCCCcEEeehHhHHHHHHHhCC
Q 030626 8 SYCRKN-PRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVCMGLQCIGEAFGG 61 (174)
Q Consensus 8 ~~~~~~-~dgiii~GG~~~~~~~--~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg 61 (174)
+..+++ .|.||+.||-.-|.-. ..-.+.+.+-..+.|+.|+|+ |-|.+..|.
T Consensus 79 e~e~~n~aDvvVLlGGLaMP~~gv~~d~~kel~ee~~~kkliGvCf--m~mF~ragW 133 (154)
T COG4090 79 EREELNSADVVVLLGGLAMPKIGVTPDDAKELLEELGNKKLIGVCF--MNMFERAGW 133 (154)
T ss_pred CccccccccEEEEEcccccCcCCCCHHHHHHHHHhcCCCceEEeeH--HHHHHHcCc
Confidence 344455 8999999997766422 122233333334569999994 555554443
No 142
>cd03129 GAT1_Peptidase_E_like Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E_like proteins. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E and, extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Peptidase E and cyanophycinases are thought to have a Ser-His-Glu catalytic triad which differs from
Probab=90.99 E-value=0.26 Score=36.72 Aligned_cols=46 Identities=20% Similarity=0.345 Sum_probs=32.1
Q ss_pred CCCEEEeCCCCCCCC----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 13 NPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 13 ~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
+.|+|+++||.-... ......+.+.+ ..++.|+.|+|.|..++...
T Consensus 80 ~ad~I~~~GG~~~~~~~~l~~t~~~~~i~~~~~~G~v~~G~SAGA~~~~~~ 130 (210)
T cd03129 80 EADGIFVGGGNQLRLLSVLRETPLLDAILKRVARGVVIGGTSAGAAVMGET 130 (210)
T ss_pred hCCEEEEcCCcHHHHHHHHHhCChHHHHHHHHHcCCeEEEcCHHHHHhhhc
Confidence 689999999754321 11123344443 45789999999999999986
No 143
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=88.83 E-value=0.11 Score=36.35 Aligned_cols=39 Identities=18% Similarity=0.450 Sum_probs=24.5
Q ss_pred hcCCCEEEeCCCCCCCCC---cchhHHHHHHcCCCCcEEeehH
Q 030626 11 RKNPRGVLISPGPGAPQD---SGISLQTVLELGPTVPLFGVCM 50 (174)
Q Consensus 11 ~~~~dgiii~GG~~~~~~---~~~~~~~i~~~~~~~PilGIC~ 50 (174)
+.++|.|||.||-.-+.- .....+.+.++.. ..++|||+
T Consensus 78 ~~~~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~-~~iiGiCF 119 (147)
T PF09897_consen 78 DPHPDVVVLMGGLAMPKSGVTPEDVNELIKKISP-KKIIGICF 119 (147)
T ss_dssp -S-EEEEEEEGGGGSTTTS--HHHHHHHHHHHEE-EEEEEEEE
T ss_pred CCCCCEEEEEcccccCCCCCCHHHHHHHHHHhCc-CCEEEEeh
Confidence 446899999999776653 2334444555443 33999995
No 144
>PF02056 Glyco_hydro_4: Family 4 glycosyl hydrolase; InterPro: IPR001088 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 4 GH4 from CAZY comprises enzymes with several known activities; 6-phospho-beta-glucosidase (3.2.1.86 from EC); 6-phospho-alpha-glucosidase (3.2.1.122 from EC); alpha-galactosidase (3.2.1.22 from EC). 6-phospho-alpha-glucosidase requires both NAD(H) and divalent metal (Mn2+, Fe2+, Co2+, or Ni2+) for activity [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1U8X_X 1S6Y_A 3FEF_B 1VJT_A 1UP4_A 1UP6_C 1UP7_E 1OBB_A.
Probab=88.17 E-value=1.1 Score=32.93 Aligned_cols=52 Identities=19% Similarity=0.310 Sum_probs=34.6
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHh
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAF 59 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~ 59 (174)
++.+++.++.||+.+|= ..+.....-..+.+...+++++|+|-|.|.+...+
T Consensus 126 ~ia~~i~~~~PdAw~iN----ytNP~~~vt~a~~r~~~~~k~vGlCh~~~~~~~~l 177 (183)
T PF02056_consen 126 DIARDIEELCPDAWLIN----YTNPMGIVTEALSRYTPKIKVVGLCHGPQGTRRQL 177 (183)
T ss_dssp HHHHHHHHHTTTSEEEE-----SSSHHHHHHHHHHHSTTSEEEEE-SHHHHHHHHH
T ss_pred HHHHHHHHhCCCcEEEe----ccChHHHHHHHHHHhCCCCCEEEECCCHHHHHHHH
Confidence 45677888888888872 12233334455666666799999999999886643
No 145
>COG4977 Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain [Transcription]
Probab=86.51 E-value=1.7 Score=34.95 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=33.5
Q ss_pred CCEEEeCCCCCCCCCc--chhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 14 PRGVLISPGPGAPQDS--GISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 14 ~dgiii~GG~~~~~~~--~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
+|-|++++|-+..... ..+...+++ ...+.++-|||-|.-+|+++
T Consensus 77 ~~~v~v~~g~~~~~~~~~~~l~~~Lr~~~~~G~~l~gictGaf~LA~a 124 (328)
T COG4977 77 IDILPVCGGLGPERPVNAPALLAWLRRAARRGARLGGLCTGAFVLAEA 124 (328)
T ss_pred ceEEEEecCCCcccccchHHHHHHHHHHHhcCCeEEEehHhHHHHHHh
Confidence 6777776765544333 335666665 67889999999999999986
No 146
>PLN02884 6-phosphofructokinase
Probab=86.51 E-value=0.84 Score=37.78 Aligned_cols=55 Identities=15% Similarity=0.164 Sum_probs=40.4
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee-------------hHhHHHHHHH
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 58 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI-------------C~G~Qll~~~ 58 (174)
+..+.+.+++.|+||+-||.++......+.+...+.+..+|+.|| |.||...+..
T Consensus 134 ~i~~~L~~~~Id~LivIGGdgS~~~a~~L~~~~~~~g~~i~vIGIPkTIDNDi~~tD~TiGFdTAv~~ 201 (411)
T PLN02884 134 DIVDSIEARGINMLFVLGGNGTHAGANAIHNECRKRKMKVSVVGVPKTIDNDILLMDKTFGFDTAVEE 201 (411)
T ss_pred HHHHHHHHcCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEeccccccCCCcCcccCCCHHHHHHH
Confidence 456778888999999999998865555444444444455888888 9999988654
No 147
>cd00363 PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to PFK family that includes ATP- and pyrophosphate (PPi)- dependent phosphofructokinases. Some members evolved by gene duplication and thus have a large C-terminal/N-terminal extension comprising a second PFK domain. Generally, ATP-PFKs are allosteric homotetramers, and PPi-PFKs are dimeric and nonallosteric except for plant PPi-PFKs which are allosteric heterotetramers.
Probab=84.71 E-value=0.69 Score=37.26 Aligned_cols=54 Identities=7% Similarity=0.102 Sum_probs=37.5
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee-------------hHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI-------------C~G~Qll~~~ 58 (174)
..+.+.+++.|++|+.||.++......+.+.+.+...++|+.|| |.||...+..
T Consensus 84 ~~~~l~~~~I~~Lv~IGGd~s~~~a~~L~e~~~~~~~~i~vigiPkTIDNDl~~td~s~Gf~TA~~~ 150 (338)
T cd00363 84 AAENLKKHGIDALVVIGGDGSYTGADLLTEEWPSKYQGFNVIGLPGTIDNDIKGTDYTIGFDTALKT 150 (338)
T ss_pred HHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHhcCCCccEEEeeecccCCCcCcccCcCHHHHHHH
Confidence 45677888999999999988866555554544444444555554 8888877654
No 148
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=84.32 E-value=15 Score=27.34 Aligned_cols=102 Identities=16% Similarity=0.100 Sum_probs=49.8
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH-------HHHHHHhCCeeccCCCcccccccceeEeccCC
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL-------QCIGEAFGGKIVRSPLGVMHGKSSLVYYDEKG 84 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~-------Qll~~~~gg~v~~~~~~~~~~~~~~~~~~~~~ 84 (174)
++|.||+....+..- .....+.+.+ +.++.+++||..+. .-....+||.....+. . ....+. ....
T Consensus 52 ~~Dvvv~~~~~~~~l-~~~~~~al~~~v~~Ggglv~lH~~~~~~~~~~~~~~~l~Gg~f~~h~~---~-~~~~v~-~~~~ 125 (217)
T PF06283_consen 52 GYDVVVFYNTGGDEL-TDEQRAALRDYVENGGGLVGLHGAATDSFPDWPEYNELLGGYFKGHPP---P-QPFTVR-VEDP 125 (217)
T ss_dssp T-SEEEEE-SSCCGS--HHHHHHHHHHHHTT-EEEEEGGGGGCCHTT-HHHHHHHS--SEEEEC---E-EEEEEE-ESST
T ss_pred CCCEEEEECCCCCcC-CHHHHHHHHHHHHcCCCEEEEcccccccchhHHHHHHeeCccccCCCC---C-ceEEEE-EcCC
Confidence 689999887764321 2233355554 67889999999443 1234466765544331 1 111122 3346
Q ss_pred CCCcccCCCCceeecccccceecccCCCCCCcEEEEEcC
Q 030626 85 EDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTAWTE 123 (174)
Q Consensus 85 ~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a~s~ 123 (174)
++|+.++++..+.+.-- -|.... .+.+...++++..
T Consensus 126 ~HPi~~gl~~~f~~~DE-~Y~~~~--~~~~~~~vL~~~~ 161 (217)
T PF06283_consen 126 DHPITRGLPESFTIYDE-WYYFLR--DPRPNVTVLLTAD 161 (217)
T ss_dssp TSCCCTTS-SEEEEEEE-EEES-B--S---CEEEEEEEE
T ss_pred CChhhcCCCCCceEccc-cccccc--CCCCCEEEEEEEE
Confidence 89999999876655211 111111 1334577777654
No 149
>PTZ00286 6-phospho-1-fructokinase; Provisional
Probab=83.56 E-value=1 Score=37.87 Aligned_cols=55 Identities=13% Similarity=0.132 Sum_probs=40.6
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEe-------------ehHhHHHHHHH
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGEA 58 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilG-------------IC~G~Qll~~~ 58 (174)
+.++.+.+++.|.|++-||.++-.....+.+.+.+.+.++|++| -|+||+..+..
T Consensus 167 ~iv~~L~~~~I~~L~vIGGdgT~~~A~~L~ee~~~~g~~I~VIGIPKTIDNDI~~td~S~GFdTAv~~ 234 (459)
T PTZ00286 167 VMVDTLIRHGINILFTLGGDGTHRGALAIYKELRRRKLNISVVGIPKTIDNDIPIIDESFGFQTAVEE 234 (459)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCCCcccCcCchHHHHH
Confidence 45677888899999999999987666555555554444566666 59999988653
No 150
>TIGR02477 PFKA_PPi diphosphate--fructose-6-phosphate 1-phosphotransferase. Diphosphate--fructose-6-phosphate 1-phosphotransferase catalyzes the addition of phosphate from diphosphate (PPi) to fructose 6-phosphate to give fructose 1,6-bisphosphate (EC 2.7.1.90). The enzyme is also known as pyrophosphate-dependent phosphofructokinase. The usage of PPi-dependent enzymes in glycolysis presumably frees up ATP for other processes. TIGR02482 represents the ATP-dependent 6-phosphofructokinase enzyme contained within Pfam pfam00365: Phosphofructokinase. This model hits primarily bacterial, plant alpha, and plant beta sequences.
Probab=81.35 E-value=1.4 Score=37.85 Aligned_cols=54 Identities=15% Similarity=0.253 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee---------------hHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV---------------CMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI---------------C~G~Qll~~~ 58 (174)
..+.+.+++.|++|+.||.++-.....+.+.+.+.+.+++|.|| |.||...+..
T Consensus 153 ~~~~l~~~~Id~LviIGGdgS~~~A~~Lae~~~~~g~~i~VIGIPkTIDNDl~~~~td~s~GFdTA~~~ 221 (539)
T TIGR02477 153 ALTTAKKLKLDGLVIIGGDDSNTNAALLAEYFAKHGLKTQVIGVPKTIDGDLKNQFIETSFGFDTACKI 221 (539)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHH
Confidence 45667788999999999988765544443433333434555554 9999888664
No 151
>PRK00561 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=80.91 E-value=1.6 Score=33.79 Aligned_cols=34 Identities=15% Similarity=0.186 Sum_probs=26.0
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~ 52 (174)
++|.+|..||-|. +++.++. ...++|+|||-.|.
T Consensus 33 ~~D~vi~iGGDGT------~L~a~~~~~~~~iPilGIN~G~ 67 (259)
T PRK00561 33 GADYLFVLGGDGF------FVSTAANYNCAGCKVVGINTGH 67 (259)
T ss_pred CCCEEEEECCcHH------HHHHHHHhcCCCCcEEEEecCC
Confidence 4699999999774 4566554 45789999999884
No 152
>PRK07085 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=80.84 E-value=1.4 Score=37.84 Aligned_cols=54 Identities=15% Similarity=0.254 Sum_probs=36.6
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEe---------------ehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG---------------VCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilG---------------IC~G~Qll~~~ 58 (174)
..+.+.+++.|++|+.||.++-.....+.+...+...++||.| .|+||...+..
T Consensus 156 i~~~l~~~~Id~LviIGGd~S~~~A~~Lae~~~~~~~~i~VIGIPkTIDNDl~~~~id~s~GFdTA~~~ 224 (555)
T PRK07085 156 CLETVKKLKLDGLVIIGGDDSNTNAAILAEYFAKHGCKTQVIGVPKTIDGDLKNEFIETSFGFDTATKT 224 (555)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCccEEEEeeeecCCCCCCcccccCCHHHHHHH
Confidence 4566778899999999998876555444443333333455555 49999888764
No 153
>PRK06555 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Validated
Probab=80.64 E-value=1.6 Score=36.07 Aligned_cols=54 Identities=11% Similarity=0.030 Sum_probs=35.4
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEe-------------ehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilG-------------IC~G~Qll~~~ 58 (174)
..+.+.+++.|++|+.||.++..-...+.+.+.+..-++|+.| .|.|+...+..
T Consensus 104 ~~~~L~~~~Id~Li~IGGdgS~~~a~~L~~~~~~~g~~i~vvgIPkTIDNDl~~td~t~Gf~TA~~~ 170 (403)
T PRK06555 104 AAERLAADGVDILHTIGGDDTNTTAADLAAYLAENGYDLTVVGLPKTIDNDVVPIRQSLGAWTAAEQ 170 (403)
T ss_pred HHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHHhCCCceEEEeeeeeeCCCCCccCCcCHHHHHHH
Confidence 4566778899999999999876544444333333222355554 59999987654
No 154
>PRK14072 6-phosphofructokinase; Provisional
Probab=80.57 E-value=1.3 Score=36.74 Aligned_cols=54 Identities=13% Similarity=0.153 Sum_probs=35.6
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEe-------------ehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG-------------VCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilG-------------IC~G~Qll~~~ 58 (174)
..+.+.+++.|++|+-||.++......+.+.+.+.+.++|+.| .|.||...+..
T Consensus 95 ~~~~l~~~~Id~LivIGGdgS~~~a~~L~e~~~~~g~~i~vIgIPkTIDNDl~gtD~t~GF~TA~~~ 161 (416)
T PRK14072 95 LLEVFKAHDIGYFFYNGGNDSMDTALKVSQLAKKMGYPIRCIGIPKTIDNDLPGTDHCPGFGSAAKY 161 (416)
T ss_pred HHHHHHHcCCCEEEEECChHHHHHHHHHHHHHHHhCCCceEEEeeecccCCCCCCCCCCChHHHHHH
Confidence 4556777899999999999886554444343332333355555 78898877653
No 155
>PRK06830 diphosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=80.54 E-value=1.5 Score=36.70 Aligned_cols=55 Identities=11% Similarity=0.147 Sum_probs=38.0
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHc-------------CCCCcEEeehHhHHHHHHH
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLEL-------------GPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-------------~~~~PilGIC~G~Qll~~~ 58 (174)
+.++.+.+++.|.|++-||.|+-.....+.+.+.+. ++++|..=-|+||+..+..
T Consensus 163 ~iv~~L~~~~I~~L~vIGGdgT~~gA~~l~ee~~~~g~~I~VIGIPKTIDNDi~~td~S~GFdTAv~~ 230 (443)
T PRK06830 163 EIVDTLERMNINILFVIGGDGTLRGASAIAEEIERRGLKISVIGIPKTIDNDINFIQKSFGFETAVEK 230 (443)
T ss_pred HHHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHhCCCceEEEeccccCCCCcCcccCCCHHHHHHH
Confidence 456778888999999999998765555444444333 3445555569999987653
No 156
>PF09075 STb_secrete: Heat-stable enterotoxin B, secretory; InterPro: IPR015160 Members of this family assume a helical secondary structure, with two alpha helices forming a disulphide cross-linked alpha-helical hairpin. The disulphide bonds are crucial for the toxic activity of the protein, and are required for maintenance of the tertiary structure, and subsequent interaction with the particulate form of guanylate cyclase, increasing cyclic GMP levels within the host intestinal epithelial cells []. ; PDB: 1EHS_A.
Probab=80.39 E-value=0.38 Score=25.74 Aligned_cols=17 Identities=29% Similarity=0.335 Sum_probs=11.5
Q ss_pred CcEEeehHhHHHHHHHh
Q 030626 43 VPLFGVCMGLQCIGEAF 59 (174)
Q Consensus 43 ~PilGIC~G~Qll~~~~ 59 (174)
--.-|-|+|.|+|..+-
T Consensus 30 dgtagacfgaqimvaak 46 (48)
T PF09075_consen 30 DGTAGACFGAQIMVAAK 46 (48)
T ss_dssp SSS--TTTTTHHHHTTT
T ss_pred cCccccccchhhhhhcc
Confidence 34678899999998653
No 157
>COG1797 CobB Cobyrinic acid a,c-diamide synthase [Coenzyme metabolism]
Probab=80.35 E-value=1 Score=37.33 Aligned_cols=142 Identities=16% Similarity=0.198 Sum_probs=73.6
Q ss_pred CCCEEEeCCCCCCCC-----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHHh---CCeeccCCC---cccccccce---
Q 030626 13 NPRGVLISPGPGAPQ-----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEAF---GGKIVRSPL---GVMHGKSSL--- 77 (174)
Q Consensus 13 ~~dgiii~GG~~~~~-----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~~---gg~v~~~~~---~~~~~~~~~--- 77 (174)
++|+|.|+||.--.+ +.....+.|++ ...++||+|=|.|+-.|+..+ .|....+.. .........
T Consensus 288 ~~D~vYlgGGYPElfA~~L~~n~~~~~~i~~~~~~G~piyaECGGlMYL~~~le~~~G~~~~M~Gvlp~~~~m~~Rl~~l 367 (451)
T COG1797 288 DVDAVYLGGGYPELFAEELSANESMRRAIKAFAAAGKPIYAECGGLMYLGESLEDADGDTYEMVGVLPGSTRMTKRLQAL 367 (451)
T ss_pred CCCEEEeCCCChHHHHHHHhhCHHHHHHHHHHHHcCCceEEecccceeehhheeccCCceeeeeeeeccchhhhhhhhcc
Confidence 489999999954333 22234566665 678899999999999999875 223333220 000000000
Q ss_pred -eEeccCCCCCcccCCCCceeecccccceecccCCCCCCcEEEE--EcCCCc---eEEEeeCCCCceEEEecCCCCcCCC
Q 030626 78 -VYYDEKGEDGLLAGLSNPFTAGRYHSLVIEKESFPSDALEVTA--WTEDGL---IMAARHKKYKHLQGVQFHPESIITT 151 (174)
Q Consensus 78 -~~~~~~~~~~l~~~~~~~~~~~~~H~~~v~~~~l~~~~~~~~a--~s~~~~---i~a~~~~~~~~~~g~QfHPE~~~~~ 151 (174)
........+.++....+.++-..+|.-.+.. .++ .+... ...++. -.++... +++|.=.|-=. .
T Consensus 368 GY~~~~~~~d~~~~~~G~~irGHEFHyS~~~~---~~~-~~~a~~~~~g~g~~~~~~G~~~g---nv~asY~H~H~---~ 437 (451)
T COG1797 368 GYREAEAVDDTLLLRAGEKIRGHEFHYSRLIT---EED-AEPAFRVRRGDGIDNGRDGYRSG---NVLASYLHLHF---A 437 (451)
T ss_pred ceeEEEecCCcccccCCceeeeeeeeeeeccc---CCc-CceeeeeecccCccccccceeeC---CeEEEEEeeec---c
Confidence 0011112344444444567777777655432 111 11111 111122 2234333 48888777533 2
Q ss_pred chHHHHHHHHHHH
Q 030626 152 EGKTIVRNFIKMI 164 (174)
Q Consensus 152 ~~~~l~~~f~~~~ 164 (174)
....+..+|++.|
T Consensus 438 s~~~~~~~~v~~~ 450 (451)
T COG1797 438 SNPAFAARFVAAA 450 (451)
T ss_pred cCHHHHHHHHHhh
Confidence 3466888888765
No 158
>PRK04761 ppnK inorganic polyphosphate/ATP-NAD kinase; Reviewed
Probab=80.18 E-value=1.8 Score=33.32 Aligned_cols=34 Identities=24% Similarity=0.401 Sum_probs=26.6
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~ 52 (174)
++|.+|..||-|. +++..+. ...++|+|||-.|.
T Consensus 25 ~~Dlvi~iGGDGT------lL~a~~~~~~~~~PvlGIN~G~ 59 (246)
T PRK04761 25 EADVIVALGGDGF------MLQTLHRYMNSGKPVYGMNRGS 59 (246)
T ss_pred cCCEEEEECCCHH------HHHHHHHhcCCCCeEEEEeCCC
Confidence 5799999999775 4566665 45689999999885
No 159
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=79.65 E-value=4.4 Score=32.60 Aligned_cols=47 Identities=15% Similarity=0.282 Sum_probs=33.2
Q ss_pred CchHHHHHHhcCCCEEEeCC-CCCCCCCcchhHHHHHH-cCCCCcEEee
Q 030626 2 SVNYLVSYCRKNPRGVLISP-GPGAPQDSGISLQTVLE-LGPTVPLFGV 48 (174)
Q Consensus 2 ~~~~~~~~~~~~~dgiii~G-G~~~~~~~~~~~~~i~~-~~~~~PilGI 48 (174)
+.+..+.+.+..++||||-| |.|+......+.+.+.+ ..+++||.=+
T Consensus 222 ~~~~l~~~~~~~~~GiVl~~~G~Gn~p~~~~~~~~l~~~~~~Gi~VV~~ 270 (335)
T PRK09461 222 SAEVVRNFLRQPVKALILRSYGVGNAPQNPALLQELKEASERGIVVVNL 270 (335)
T ss_pred CHHHHHHHHhCCCCEEEEccCCCCCCCCCHHHHHHHHHHHHCCCEEEEe
Confidence 44556666666789999999 88876654556666665 5677998765
No 160
>PLN03028 pyrophosphate--fructose-6-phosphate 1-phosphotransferase; Provisional
Probab=78.64 E-value=2 Score=37.45 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=36.1
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHc-------------CCCCc--EEeehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLEL-------------GPTVP--LFGVCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-------------~~~~P--ilGIC~G~Qll~~~ 58 (174)
..+.+.+++.|++|+-||.++-.....+.+...+. +++++ ..-.|+||...+..
T Consensus 165 i~e~l~~l~Id~LvvIGGddS~~~A~~Lae~~~~~~~~i~VIGIPKTIDNDL~~~~td~s~GFdTA~k~ 233 (610)
T PLN03028 165 ALAACEALKLDGLVIIGGVTSNTDAAQLAETFAEAKCKTKVVGVPVTLNGDLKNQFVETNVGFDTICKV 233 (610)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHHcCCCceEEEeceeeeCCCCCCCCCCCcCHHHHHHH
Confidence 34567778999999999988865544443333322 34454 45579999888654
No 161
>PLN02251 pyrophosphate-dependent phosphofructokinase
Probab=78.53 E-value=2 Score=37.03 Aligned_cols=54 Identities=7% Similarity=0.123 Sum_probs=36.0
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEe---------------ehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG---------------VCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilG---------------IC~G~Qll~~~ 58 (174)
..+.+.+++.|++|+.||.++-.....+.+.+.+.+.+++|.| .|+||...+..
T Consensus 182 ~~~~l~~l~Id~LViIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDL~~td~e~s~GFdTA~k~ 250 (568)
T PLN02251 182 AEETATKLDLDGLVVIGGDDSNTNACLLAEYFRAKNLKTRVIGCPKTIDGDLKSKEVPTSFGFDTACKI 250 (568)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCeeEEEeCceEeCCCCCCcCCCCCCHHHHHHH
Confidence 4566777899999999998876554444343333333355554 39999988764
No 162
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=78.51 E-value=1.9 Score=33.49 Aligned_cols=34 Identities=29% Similarity=0.382 Sum_probs=26.0
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHcC---CCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLELG---PTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~---~~~PilGIC~G~ 52 (174)
++|.+|..||-|. +++..+... .++|++||-.|.
T Consensus 35 ~~Dlvi~iGGDGT------~L~a~~~~~~~~~~iPilGIN~G~ 71 (265)
T PRK04885 35 NPDIVISVGGDGT------LLSAFHRYENQLDKVRFVGVHTGH 71 (265)
T ss_pred CCCEEEEECCcHH------HHHHHHHhcccCCCCeEEEEeCCC
Confidence 5799999999775 456665533 589999999885
No 163
>COG3199 Predicted inorganic polyphosphate/ATP-NAD kinase [General function prediction only]
Probab=78.02 E-value=4.3 Score=32.68 Aligned_cols=43 Identities=21% Similarity=0.449 Sum_probs=31.6
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhHHHH
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGLQCI 55 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~Qll 55 (174)
...+.+...|.|++.||-|. .+.+.. .+.++|+|||-.|--+-
T Consensus 93 ~r~~~~~gVdlIvfaGGDGT-------arDVa~av~~~vPvLGipaGvk~~ 136 (355)
T COG3199 93 VRRMVERGVDLIVFAGGDGT-------ARDVAEAVGADVPVLGIPAGVKNY 136 (355)
T ss_pred HHHHHhcCceEEEEeCCCcc-------HHHHHhhccCCCceEeecccccee
Confidence 44555567999999999886 344443 48899999999885443
No 164
>PLN02564 6-phosphofructokinase
Probab=77.78 E-value=2 Score=36.26 Aligned_cols=55 Identities=18% Similarity=0.287 Sum_probs=38.9
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee-------------hHhHHHHHHH
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV-------------CMGLQCIGEA 58 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI-------------C~G~Qll~~~ 58 (174)
+..+.|.+++.|+|++-||.|+-.....+.+.+.+.+-.+++.|| |+||...+..
T Consensus 167 ~iv~~L~~~~Id~LivIGGDGS~~gA~~L~e~~~~~g~~i~VIGIPKTIDNDI~~tD~T~GFdTAv~~ 234 (484)
T PLN02564 167 KIVDSIQDRGINQVYIIGGDGTQKGASVIYEEIRRRGLKVAVAGIPKTIDNDIPVIDKSFGFDTAVEE 234 (484)
T ss_pred HHHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHHcCCCceEEEecccccCCCcCcccCCCHHHHHHH
Confidence 456788888999999999999866555555554444433445554 9999988653
No 165
>COG4126 Hydantoin racemase [Amino acid transport and metabolism]
Probab=77.57 E-value=5.9 Score=29.92 Aligned_cols=47 Identities=15% Similarity=0.250 Sum_probs=33.6
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHHhCCeeccC
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEAFGGKIVRS 66 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~~gg~v~~~ 66 (174)
.+|++||+ .+++ ..+..++++. .+|++|||--.-+.+...|-++.-.
T Consensus 69 GvdaiiIa-----Cf~D-Pgl~~~Re~~-~~PviGi~eAsv~~A~~vgrrfsVi 115 (230)
T COG4126 69 GVDAIIIA-----CFSD-PGLAAARERA-AIPVIGICEASVLAALFVGRRFSVI 115 (230)
T ss_pred CCcEEEEE-----ecCC-hHHHHHHHHh-CCCceehhHHHHHHHHHhcceEEEE
Confidence 47888874 2333 4456677632 4999999999999998888766443
No 166
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.94 E-value=2.6 Score=33.54 Aligned_cols=34 Identities=29% Similarity=0.404 Sum_probs=25.8
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~ 52 (174)
++|.+|..||-|. +++..+. ...++|+|||-.|.
T Consensus 72 ~~D~vi~lGGDGT------~L~aar~~~~~~~PilGIN~G~ 106 (306)
T PRK03372 72 GCELVLVLGGDGT------ILRAAELARAADVPVLGVNLGH 106 (306)
T ss_pred CCCEEEEEcCCHH------HHHHHHHhccCCCcEEEEecCC
Confidence 5789999999775 4555554 45689999999884
No 167
>COG3155 ElbB Uncharacterized protein involved in an early stage of isoprenoid biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=76.94 E-value=3.4 Score=29.70 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=39.8
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCcch-------------hHHHHHH-cCCCCcEEeehHhHHHHHHHhCCee
Q 030626 7 VSYCRKNPRGVLISPGPGAPQDSGI-------------SLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKI 63 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~~~~-------------~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v 63 (174)
.+.....+|++|++||.|....... +.+.... ...++|+==||..=-++...+|..+
T Consensus 79 ~~a~~e~~DALivPGGFGAAKNLsdFA~kGaeC~v~pDv~al~~a~~~agKP~G~iCIaP~m~pki~g~~~ 149 (217)
T COG3155 79 AQADAEELDALIVPGGFGAAKNLSDFASKGAECSVDPDLKALAQAMHQAGKPLGFMCIAPAMLPKIFGFPL 149 (217)
T ss_pred hhcCHHhcceeeccCccchhhhhHHHhccCccceeCHHHHHHHHHHHHhCCCceEEEecHHHHHHHcCCce
Confidence 3344446899999999997643322 2333443 4678999999999999998887543
No 168
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=76.33 E-value=2.7 Score=33.18 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=25.8
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~ 52 (174)
.+|.+|..||-|. +++..+. ...++|||||-.|.
T Consensus 64 ~~dlvi~lGGDGT------~L~aa~~~~~~~~PilGIN~G~ 98 (292)
T PRK01911 64 SADMVISIGGDGT------FLRTATYVGNSNIPILGINTGR 98 (292)
T ss_pred CCCEEEEECCcHH------HHHHHHHhcCCCCCEEEEecCC
Confidence 4789999999775 4555554 34689999999986
No 169
>cd00765 Pyrophosphate_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include pyrophosphate-dependent phosphofructokinases. These are found in bacteria as well as plants. These may be dimeric nonallosteric enzymes as in bacteria or allosteric heterotetramers as in plants.
Probab=76.24 E-value=2.5 Score=36.34 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=35.7
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee---------------hHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV---------------CMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI---------------C~G~Qll~~~ 58 (174)
..+.+.+++.|++|+-||.++-.....+.+...+.+..++|.|| |.||...+..
T Consensus 158 i~~~l~~~~Id~LviIGGddS~~~A~~Lae~~~~~g~~i~VIGVPKTIDNDl~~t~id~s~GFdTA~k~ 226 (550)
T cd00765 158 AEETAKKLDLDALVVIGGDDSNTNAALLAENFRSKGLKTRVIGVPKTIDGDLKNKEIETSFGFDTATKI 226 (550)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHHhcCCCceEEEEeeeecCCCCCCCCCCCcCHHHHHHH
Confidence 45667788999999999988755444443333333333555553 9999887764
No 170
>COG4285 Uncharacterized conserved protein [Function unknown]
Probab=75.43 E-value=2.7 Score=31.70 Aligned_cols=47 Identities=17% Similarity=0.280 Sum_probs=31.0
Q ss_pred CEEEeCCCCCCCCCcc---hhHHHHHH-cCCCCcEEeehHhHHHHHHHhCCeeccC
Q 030626 15 RGVLISPGPGAPQDSG---ISLQTVLE-LGPTVPLFGVCMGLQCIGEAFGGKIVRS 66 (174)
Q Consensus 15 dgiii~GG~~~~~~~~---~~~~~i~~-~~~~~PilGIC~G~Qll~~~~gg~v~~~ 66 (174)
..+|++||..-++-.. .--+.|.. ..++=-.||||.|. +||.+....
T Consensus 51 ~lLV~pGGaDlpY~~~l~g~g~a~i~~yvk~GG~fLGiCAG~-----YFg~~~veF 101 (253)
T COG4285 51 LLLVFPGGADLPYVQVLQGLGTARIKNYVKEGGNFLGICAGG-----YFGSAYVEF 101 (253)
T ss_pred EEEEecCCCCchHHHHhcchhhhhHHHHHhcCCeEEEEeccc-----cccceEEEE
Confidence 5789999988766331 12244444 67788899999885 566655443
No 171
>PLN02929 NADH kinase
Probab=75.27 E-value=3.1 Score=33.01 Aligned_cols=33 Identities=27% Similarity=0.358 Sum_probs=25.6
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHh
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 51 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G 51 (174)
++|.||..||-|. +++..+....++|||||-.|
T Consensus 64 ~~Dlvi~lGGDGT------~L~aa~~~~~~iPvlGIN~G 96 (301)
T PLN02929 64 DVDLVVAVGGDGT------LLQASHFLDDSIPVLGVNSD 96 (301)
T ss_pred CCCEEEEECCcHH------HHHHHHHcCCCCcEEEEECC
Confidence 5799999999775 44555545678999999998
No 172
>PRK14077 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=74.08 E-value=3.3 Score=32.63 Aligned_cols=34 Identities=12% Similarity=0.086 Sum_probs=25.9
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~ 52 (174)
++|.+|..||-|. +++..+. ...++|+|||-.|.
T Consensus 64 ~~Dlvi~iGGDGT------~L~aa~~~~~~~~PilGIN~G~ 98 (287)
T PRK14077 64 ISDFLISLGGDGT------LISLCRKAAEYDKFVLGIHAGH 98 (287)
T ss_pred CCCEEEEECCCHH------HHHHHHHhcCCCCcEEEEeCCC
Confidence 5789998998764 4555554 44689999999986
No 173
>PRK04539 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.42 E-value=3.5 Score=32.64 Aligned_cols=34 Identities=26% Similarity=0.312 Sum_probs=25.8
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~ 52 (174)
++|.+|..||-|. +++..+. ...++|+|||-.|.
T Consensus 68 ~~D~vi~lGGDGT------~L~aa~~~~~~~~PilGIN~G~ 102 (296)
T PRK04539 68 YCDLVAVLGGDGT------FLSVAREIAPRAVPIIGINQGH 102 (296)
T ss_pred CCCEEEEECCcHH------HHHHHHHhcccCCCEEEEecCC
Confidence 5789999998764 4555554 34689999999986
No 174
>PRK02231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.31 E-value=3.5 Score=32.21 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=25.2
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHh
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMG 51 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G 51 (174)
++|.+|..||-|. +++..+. ...++|+|||-.|
T Consensus 42 ~~d~vi~iGGDGT------~L~aa~~~~~~~~PilgIn~G 75 (272)
T PRK02231 42 RAQLAIVIGGDGN------MLGRARVLAKYDIPLIGINRG 75 (272)
T ss_pred CCCEEEEECCcHH------HHHHHHHhccCCCcEEEEeCC
Confidence 5799999999774 4555554 3568999999988
No 175
>PRK02649 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=73.29 E-value=3.2 Score=33.00 Aligned_cols=34 Identities=18% Similarity=0.284 Sum_probs=25.7
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~ 52 (174)
++|.+|..||-|. +++..+. ...++|+|||-.|.
T Consensus 68 ~~Dlvi~iGGDGT------lL~aar~~~~~~iPilGIN~G~ 102 (305)
T PRK02649 68 SMKFAIVLGGDGT------VLSAARQLAPCGIPLLTINTGH 102 (305)
T ss_pred CcCEEEEEeCcHH------HHHHHHHhcCCCCcEEEEeCCC
Confidence 4789999999774 4566655 45689999998873
No 176
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=73.10 E-value=9.1 Score=32.05 Aligned_cols=51 Identities=14% Similarity=0.270 Sum_probs=32.8
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHHHHH
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll~~~ 58 (174)
++.+++.+..+|+++|--. +| .+..-..+.+...+.+++|+|-|.+.+...
T Consensus 125 ~i~~~i~~~~pda~lin~t--NP--~~~vt~~~~~~~~~~kviGlC~~~~~~~~~ 175 (437)
T cd05298 125 ELIDDIEKYSPDAWILNYS--NP--AAIVAEALRRLFPNARILNICDMPIAIMDS 175 (437)
T ss_pred HHHHHHHHHCCCeEEEEec--Cc--HHHHHHHHHHHCCCCCEEEECCcHHHHHHH
Confidence 4566777778898887522 22 222223444445578999999999887544
No 177
>TIGR02069 cyanophycinase cyanophycinase. This model describes both cytosolic and extracellular cyanophycinases. The former are part of a system in many Cyanobacteria and a few other species of generating and later utilizing a storage polymer for nitrogen, carbon, and energy, called cyanophycin. The latter are found in species such as Pseudomonas anguilliseptica that can use external cyanophycin. The polymer has a backbone of L-aspartic acid, with most Asp side chain carboxyl groups attached to L-arginine.
Probab=72.32 E-value=4.7 Score=31.03 Aligned_cols=46 Identities=15% Similarity=0.244 Sum_probs=32.9
Q ss_pred CCCEEEeCCCCCCC----CCcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 13 NPRGVLISPGPGAP----QDSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 13 ~~dgiii~GG~~~~----~~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
+.|+|+++||.-.. .....+...+++ ..++.|+.|+--|.-+|+..
T Consensus 82 ~ad~I~~~GGnq~~l~~~l~~t~l~~~l~~~~~~G~vi~G~SAGA~i~~~~ 132 (250)
T TIGR02069 82 NATGIFFTGGDQLRITSLLGDTPLLDRLRKRVHEGIILGGTSAGAAVMSDT 132 (250)
T ss_pred hCCEEEEeCCCHHHHHHHHcCCcHHHHHHHHHHcCCeEEEccHHHHhcccc
Confidence 68999999996432 222334455554 66789999999999988654
No 178
>PRK03378 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=72.13 E-value=3.8 Score=32.36 Aligned_cols=34 Identities=18% Similarity=0.248 Sum_probs=25.8
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHc-CCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PilGIC~G~ 52 (174)
++|.+|..||-|. +++..+.. ..++|+|||-.|.
T Consensus 63 ~~d~vi~lGGDGT------~L~aa~~~~~~~~Pilgin~G~ 97 (292)
T PRK03378 63 QADLAIVVGGDGN------MLGAARVLARYDIKVIGINRGN 97 (292)
T ss_pred CCCEEEEECCcHH------HHHHHHHhcCCCCeEEEEECCC
Confidence 5789999999775 44555543 3479999999998
No 179
>PRK14075 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=70.21 E-value=4.3 Score=31.38 Aligned_cols=32 Identities=22% Similarity=0.417 Sum_probs=24.7
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~ 52 (174)
++|.+|..||-|. +++..+.. ++|+|||-.|.
T Consensus 41 ~~d~vi~iGGDGT------~L~a~~~~--~~Pilgin~G~ 72 (256)
T PRK14075 41 TADLIIVVGGDGT------VLKAAKKV--GTPLVGFKAGR 72 (256)
T ss_pred CCCEEEEECCcHH------HHHHHHHc--CCCEEEEeCCC
Confidence 5789999999775 34555555 79999999885
No 180
>PF01513 NAD_kinase: ATP-NAD kinase; InterPro: IPR002504 Members of this family are ATP-NAD kinases 2.7.1.23 from EC. The enzymes catalyse the phosphorylation of NAD to NADP utilizing ATP and other nucleoside triphosphates as well as inorganic polyphosphate as a source of phosphorus.; GO: 0003951 NAD+ kinase activity, 0008152 metabolic process; PDB: 1U0T_B 1U0R_D 1Y3H_A 1Y3I_A 3AFO_B 1YT5_B 2AN1_A 2I2A_A 3V8P_A 2I1W_A ....
Probab=69.74 E-value=2.7 Score=32.94 Aligned_cols=39 Identities=18% Similarity=0.381 Sum_probs=27.3
Q ss_pred HHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcC-CCCcEEeehHhH
Q 030626 8 SYCRKNPRGVLISPGPGAPQDSGISLQTVLELG-PTVPLFGVCMGL 52 (174)
Q Consensus 8 ~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~-~~~PilGIC~G~ 52 (174)
+....++|.+|..||-|. +++..+... .++|+|||=.|.
T Consensus 71 ~~~~~~~D~ii~lGGDGT------~L~~~~~~~~~~~Pilgin~G~ 110 (285)
T PF01513_consen 71 EMLEEGVDLIIVLGGDGT------FLRAARLFGDYDIPILGINTGT 110 (285)
T ss_dssp HHHCCCSSEEEEEESHHH------HHHHHHHCTTST-EEEEEESSS
T ss_pred hhcccCCCEEEEECCCHH------HHHHHHHhccCCCcEEeecCCC
Confidence 444568999999999664 445555544 489999998774
No 181
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=68.40 E-value=5.4 Score=31.46 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=26.1
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~ 52 (174)
++|.+|..||-|. +++.++. ...++|+|||-.|.
T Consensus 63 ~~d~vi~~GGDGt------~l~~~~~~~~~~~pilGIn~G~ 97 (291)
T PRK02155 63 RADLAVVLGGDGT------MLGIGRQLAPYGVPLIGINHGR 97 (291)
T ss_pred CCCEEEEECCcHH------HHHHHHHhcCCCCCEEEEcCCC
Confidence 5789999999775 4455555 35689999999886
No 182
>cd03145 GAT1_cyanophycinase Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. Type 1 glutamine amidotransferase (GATase1)-like domain found in cyanophycinase. This group contains proteins similar to the extracellular cyanophycinases from Pseudomonas anguilliseptica BI (CphE) and Synechocystis sp. PCC 6803 CphB. Cyanophycinases are intracellular exopeptidases which hydrolyze the polymer cyanophycin (multi L-arginyl-poly-L-aspartic acid) to the dipeptide beta-Asp-Arg. Cyanophycinase is believed to be a serine-type exopeptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow.
Probab=66.43 E-value=7.6 Score=29.10 Aligned_cols=46 Identities=13% Similarity=0.216 Sum_probs=32.6
Q ss_pred CCCEEEeCCCCCCCC----CcchhHHHHHH-cCCCCcEEeehHhHHHHHHH
Q 030626 13 NPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 13 ~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~~ 58 (174)
+.|+|+++||.-... ....+.+.+++ ..++.|+.|+--|.-++...
T Consensus 83 ~ad~I~~~GG~~~~~~~~l~~t~l~~~l~~~~~~G~v~~G~SAGA~i~~~~ 133 (217)
T cd03145 83 DADGIFFTGGDQLRITSALGGTPLLDALRKVYRGGVVIGGTSAGAAVMSDT 133 (217)
T ss_pred hCCEEEEeCCcHHHHHHHHcCChHHHHHHHHHHcCCEEEEccHHHHhhhhc
Confidence 679999999955321 11223344554 56889999999999998765
No 183
>PLN02935 Bifunctional NADH kinase/NAD(+) kinase
Probab=66.25 E-value=5.9 Score=33.70 Aligned_cols=33 Identities=27% Similarity=0.360 Sum_probs=25.0
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHh
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMG 51 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G 51 (174)
++|.||..||-|. +++..+. ....+|||||-.|
T Consensus 262 ~~DlVIsiGGDGT------lL~Aar~~~~~~iPILGIN~G 295 (508)
T PLN02935 262 KVDLVITLGGDGT------VLWAASMFKGPVPPVVPFSMG 295 (508)
T ss_pred CCCEEEEECCcHH------HHHHHHHhccCCCcEEEEeCC
Confidence 5899999999775 4455554 3457999999977
No 184
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=65.80 E-value=5.1 Score=31.37 Aligned_cols=34 Identities=21% Similarity=0.395 Sum_probs=25.5
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~ 52 (174)
++|.+|..||-|. +++.++....++|++||=.|.
T Consensus 57 ~~d~vi~iGGDGT------lL~a~~~~~~~~pi~gIn~G~ 90 (277)
T PRK03708 57 DVDFIIAIGGDGT------ILRIEHKTKKDIPILGINMGT 90 (277)
T ss_pred CCCEEEEEeCcHH------HHHHHHhcCCCCeEEEEeCCC
Confidence 5789999999775 334454345689999999887
No 185
>cd00763 Bacterial_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include bacterial ATP-dependent phosphofructokinases. These are allosrterically regulated homotetramers; the subunits are of about 320 amino acids.
Probab=65.21 E-value=4.7 Score=32.26 Aligned_cols=54 Identities=7% Similarity=0.073 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHH-H------HHcCCCCcEEeehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQT-V------LELGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~-i------~~~~~~~PilGIC~G~Qll~~~ 58 (174)
..+.+.+++.|++++-||.++......+.+. + ..+++++|--=.|.||...+..
T Consensus 84 ~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~i~vigiPkTIDNDi~gtd~t~Gf~TA~~~ 144 (317)
T cd00763 84 AIEQLKKHGIDALVVIGGDGSYMGAMRLTEHGFPCVGLPGTIDNDIPGTDYTIGFDTALNT 144 (317)
T ss_pred HHHHHHHcCCCEEEEECCchHHHHHHHHHHcCCCEEEecccccCCCCCCccCCCHHHHHHH
Confidence 4566778899999999998874332222111 0 0112333333348888877653
No 186
>TIGR02482 PFKA_ATP 6-phosphofructokinase. 6-phosphofructokinase (EC 2.7.1.11) catalyzes the addition of phosphate from ATP to fructose 6-phosphate to give fructose 1,6-bisphosphate. This represents a key control step in glycolysis. This model hits bacterial ATP-dependent 6-phosphofructokinases which lack a beta-hairpin loop present in TIGR02483 family members. TIGR02483 contains members that are ATP-dependent as well as members that are pyrophosphate-dependent. TIGR02477 represents the pyrophosphate-dependent phosphofructokinase, diphosphate--fructose-6-phosphate 1-phosphotransferase (EC 2.7.1.90).
Probab=64.41 E-value=5.5 Score=31.64 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=33.6
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHH--------HHcCCCCcEEeehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTV--------LELGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i--------~~~~~~~PilGIC~G~Qll~~~ 58 (174)
..+.+.+++.|++|+.||.++......+.+.. ..+++++|..=.|.||...+..
T Consensus 83 ~~~~l~~~~Id~Li~IGGdgs~~~a~~L~e~~~i~vigiPkTIDNDl~~td~s~GfdTA~~~ 144 (301)
T TIGR02482 83 AVENLKKLGIEGLVVIGGDGSYTGAQKLYEEGGIPVIGLPGTIDNDIPGTDYTIGFDTALNT 144 (301)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHhhCCCEEeecccccCCCcCcccCcChhHHHHH
Confidence 45667888999999999988754333322211 0123445544469999987653
No 187
>smart00870 Asparaginase Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma PUBMED:3026924. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma PUBMED:2407723, PUBMED:3379033 - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die.
Probab=64.38 E-value=13 Score=29.70 Aligned_cols=45 Identities=18% Similarity=0.327 Sum_probs=30.8
Q ss_pred CchHHHHHHhcCCCEEEeCC-CCCCCCCcchhHHHHHH-cCCCCcEEee
Q 030626 2 SVNYLVSYCRKNPRGVLISP-GPGAPQDSGISLQTVLE-LGPTVPLFGV 48 (174)
Q Consensus 2 ~~~~~~~~~~~~~dgiii~G-G~~~~~~~~~~~~~i~~-~~~~~PilGI 48 (174)
+.+..+.+.+..++||||-| |.|+... .+.+.+.+ ..+++||.-.
T Consensus 224 ~~~~l~~~~~~~~~GlVl~~~G~Gn~p~--~~~~~l~~a~~~gipVV~~ 270 (323)
T smart00870 224 DAELLDALLDSGAKGLVLEGTGAGNVPP--DLLEALKEALERGIPVVRT 270 (323)
T ss_pred CHHHHHHHHhCCCCEEEEEeeCCCCCCH--HHHHHHHHHHHCCCEEEEe
Confidence 44556666566789999998 7776543 45566655 5677888765
No 188
>TIGR02483 PFK_mixed phosphofructokinase. Members of this family that are characterized, save one, are phosphofructokinases dependent on pyrophosphate (EC 2.7.1.90) rather than ATP (EC 2.7.1.11). The exception is one of three phosphofructokinases from Streptomyces coelicolor. Family members are both bacterial and archaeal.
Probab=63.42 E-value=5.6 Score=31.90 Aligned_cols=54 Identities=7% Similarity=0.033 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHH-H------HHcCCCCcEEeehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQT-V------LELGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~-i------~~~~~~~PilGIC~G~Qll~~~ 58 (174)
..+.+.+++.|++|+.||.++......+.+. + ..+++++|--=.|.||...+..
T Consensus 86 ~~~~l~~~~Id~LivIGGdgS~~~a~~L~~~gi~vigiPkTIDNDl~gtd~tiGfdTA~~~ 146 (324)
T TIGR02483 86 IVANLKELGLDALIAIGGDGTLGIARRLADKGLPVVGVPKTIDNDLEATDYTFGFDTAVEI 146 (324)
T ss_pred HHHHHHHcCCCEEEEECCchHHHHHHHHHhcCCCEEeeccccCCCCcCCccCcCHHHHHHH
Confidence 4566777899999999998875433222110 0 0123444444458898887654
No 189
>PRK04183 glutamyl-tRNA(Gln) amidotransferase subunit D; Validated
Probab=62.84 E-value=14 Score=30.82 Aligned_cols=46 Identities=20% Similarity=0.295 Sum_probs=32.5
Q ss_pred CCchHHHHHHhcCCCEEEeCC-CCCCCCCcchhHHHHHH-cCCCCcEEee
Q 030626 1 MSVNYLVSYCRKNPRGVLISP-GPGAPQDSGISLQTVLE-LGPTVPLFGV 48 (174)
Q Consensus 1 ~~~~~~~~~~~~~~dgiii~G-G~~~~~~~~~~~~~i~~-~~~~~PilGI 48 (174)
|+.+..+.+.+..++||||-| |.|+... .+...+.+ ..+++||.=+
T Consensus 300 ~~~~~l~~~~~~g~~GiVleg~G~Gnvp~--~~~~~l~~a~~~Gi~VV~t 347 (419)
T PRK04183 300 MDPEILDFYVDKGYKGIVIEGTGLGHVST--DLIPSIKRATDDGIPVVMT 347 (419)
T ss_pred CCHHHHHHHHhCCCCEEEEEeECCCCCCH--HHHHHHHHHHHCCCEEEEe
Confidence 345566677666799999998 7777643 46666665 5677998765
No 190
>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=62.40 E-value=9.7 Score=28.71 Aligned_cols=43 Identities=26% Similarity=0.549 Sum_probs=30.0
Q ss_pred CCCEEEeCCCCCCCCCc--chhHHHHHHcCCCCcEEeehHhHHHHH
Q 030626 13 NPRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVCMGLQCIG 56 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~--~~~~~~i~~~~~~~PilGIC~G~Qll~ 56 (174)
+.|.|.++=||||+.-. +.....=.++..++|++|||- +.+++
T Consensus 58 dld~iav~~GPGSFTGlRIG~~~AkgLA~~l~iplvgvss-L~~~A 102 (220)
T COG1214 58 DLDAIAVAKGPGSFTGLRIGVAFAKGLALALNIPLVGVSS-LEALA 102 (220)
T ss_pred HCCEEEEccCCCcccchhhHHHHHHHHHHHcCCCEEEeCH-HHHHH
Confidence 57899999999998644 333333355677899999994 33333
No 191
>TIGR02153 gatD_arch glutamyl-tRNA(Gln) amidotransferase, subunit D. This peptide is found only in the Archaea. It is part of a heterodimer, with GatE (TIGR00134), that acts as an amidotransferase on misacylated Glu-tRNA(Gln) to produce Gln-tRNA(Gln). The analogous amidotransferase found in bacteria is the GatABC system, although GatABC homologs in the Archaea appear to act instead on Asp-tRNA(Asn).
Probab=62.18 E-value=13 Score=30.82 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=32.6
Q ss_pred CCchHHHHHHhcCCCEEEeCC-CCCCCCCcchhHHHHHH-cCCCCcEEee
Q 030626 1 MSVNYLVSYCRKNPRGVLISP-GPGAPQDSGISLQTVLE-LGPTVPLFGV 48 (174)
Q Consensus 1 ~~~~~~~~~~~~~~dgiii~G-G~~~~~~~~~~~~~i~~-~~~~~PilGI 48 (174)
|+.+..+.+.+..++||||-| |.|+... .+...+.+ ..+++||.=+
T Consensus 287 ~d~~~l~~~~~~g~~GiVleg~G~G~vp~--~~~~~l~~a~~~GipVV~t 334 (404)
T TIGR02153 287 ISPEIIEFLVDKGYKGIVIEGTGLGHVSE--DWIPSIKRATDDGVPVVMT 334 (404)
T ss_pred CCHHHHHHHHhCCCCEEEEeeECCCCCCH--HHHHHHHHHHHCCCEEEEe
Confidence 345666777666799999998 8887643 46666665 5677998765
No 192
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=61.63 E-value=16 Score=29.29 Aligned_cols=45 Identities=16% Similarity=0.254 Sum_probs=31.1
Q ss_pred CchHHHHHHhcCCCEEEeCC-CCCCCCCcchhHHHHHH-cCCCCcEEee
Q 030626 2 SVNYLVSYCRKNPRGVLISP-GPGAPQDSGISLQTVLE-LGPTVPLFGV 48 (174)
Q Consensus 2 ~~~~~~~~~~~~~dgiii~G-G~~~~~~~~~~~~~i~~-~~~~~PilGI 48 (174)
+.+..+.+.+..++||||-| |.|+... .+...+.+ ..+++||.-+
T Consensus 222 ~~~~l~~~~~~g~~GiVl~~~G~Gn~p~--~~~~~l~~a~~~gi~VV~~ 268 (323)
T cd00411 222 SAEAVRAFLRAGYKGIVLAGYGAGNVPT--DLIDELEEAAERGVVVVNS 268 (323)
T ss_pred CHHHHHHHHhCCCCEEEEEeECCCCCCH--HHHHHHHHHHHCCCEEEEe
Confidence 34455666556789999988 8887653 55566655 5677998876
No 193
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=61.59 E-value=7.2 Score=36.90 Aligned_cols=53 Identities=9% Similarity=0.171 Sum_probs=34.5
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEe---------------ehHhHHHHHHH
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG---------------VCMGLQCIGEA 58 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilG---------------IC~G~Qll~~~ 58 (174)
.+.+.+++.|++|+-||.++-.....+.+...+.+.+++|.| .|+||...+..
T Consensus 189 le~lkkl~Id~LVvIGGDgS~t~A~~LaEy~~~~g~~I~VIGIPKTIDNDL~g~~tD~S~GFdTA~k~ 256 (1328)
T PTZ00468 189 LEICEKLKLHGLVVIGGDDSNTNAAVLAEYFKRNSSSTVVVGCPKTIDGDLKNEVIETSFGYDTAVKT 256 (1328)
T ss_pred HHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhcCCCeeEEEEeEEEcCCCCCCcCCCCCCHHHHHHH
Confidence 455677899999999998876544444333333333344444 59999888654
No 194
>PF11051 Mannosyl_trans3: Mannosyltransferase putative; InterPro: IPR022751 Alpha-mannosyltransferase is responsible for the addition of residues to the outer chain of core N-linked polysaccharides and to O-linked mannotriose. It is implicated in late Golgi modifications [][][]. The proteins matching this entry are conserved in fungi and also found in some phototrophic organisms.; GO: 0006486 protein glycosylation
Probab=60.62 E-value=5.1 Score=31.17 Aligned_cols=37 Identities=24% Similarity=0.316 Sum_probs=26.2
Q ss_pred CEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHh
Q 030626 15 RGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 51 (174)
Q Consensus 15 dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G 51 (174)
+|||+++|.......-..++.+++.+..+||==+=.|
T Consensus 2 rGIVi~~g~~~~~~a~~lI~~LR~~g~~LPIEI~~~~ 38 (271)
T PF11051_consen 2 RGIVITAGDKYLWLALRLIRVLRRLGNTLPIEIIYPG 38 (271)
T ss_pred CEEEEEecCccHHHHHHHHHHHHHhCCCCCEEEEeCC
Confidence 5999999874444444567888889999998654333
No 195
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=59.86 E-value=9 Score=33.21 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=25.7
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~ 52 (174)
++|.+|..||-|. +++..+. ...++|||||-.|.
T Consensus 348 ~~dlvi~lGGDGT------~L~aa~~~~~~~~PilGin~G~ 382 (569)
T PRK14076 348 EISHIISIGGDGT------VLRASKLVNGEEIPIICINMGT 382 (569)
T ss_pred CCCEEEEECCcHH------HHHHHHHhcCCCCCEEEEcCCC
Confidence 4789999999775 4555555 34689999999885
No 196
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase
Probab=59.53 E-value=51 Score=27.03 Aligned_cols=60 Identities=20% Similarity=0.277 Sum_probs=39.9
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCcc-h---hHHHHHH-cCCCCcEE---eehHhHHHH-HHHhCCeeccC
Q 030626 7 VSYCRKNPRGVLISPGPGAPQDSG-I---SLQTVLE-LGPTVPLF---GVCMGLQCI-GEAFGGKIVRS 66 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~~~-~---~~~~i~~-~~~~~Pil---GIC~G~Qll-~~~~gg~v~~~ 66 (174)
....+..+|+|+++|--|...+.. . .+..+.+ ...++||+ ||..|..++ +.++|++..-.
T Consensus 239 ~~a~~~Gvd~I~VsnhGGrqld~~~~t~~~L~ei~~av~~~~~vi~dGGIr~G~Dv~KALALGA~aV~i 307 (367)
T PLN02493 239 RIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 307 (367)
T ss_pred HHHHHcCCCEEEECCCCCCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 344556899999999666544433 2 2233333 56679988 788899988 56788766554
No 197
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=58.90 E-value=8.7 Score=34.51 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=34.2
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHc-CCCCcEEee-------------hHhHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGV-------------CMGLQCIGE 57 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PilGI-------------C~G~Qll~~ 57 (174)
..+.+.+++.|++|+-||.++......+.+..... ..++|+.|| |+|+.....
T Consensus 470 i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~y~~~~i~vVgIPkTIDNDv~gTd~siGfdTAln 536 (762)
T cd00764 470 IAYNFQKYGIDGLIIVGGFEAYKGLLQLREAREQYEEFCIPMVLIPATVSNNVPGTDFSLGSDTALN 536 (762)
T ss_pred HHHHHHHcCCCEEEEECChhHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCcCCCCHHHHHH
Confidence 34567778999999999988754333332222111 245777665 899987754
No 198
>PTZ00468 phosphofructokinase family protein; Provisional
Probab=58.21 E-value=9.4 Score=36.18 Aligned_cols=53 Identities=13% Similarity=0.193 Sum_probs=34.3
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHc-----CCCCcEEe---------------ehHhHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLEL-----GPTVPLFG---------------VCMGLQCIGE 57 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-----~~~~PilG---------------IC~G~Qll~~ 57 (174)
..+.+.+++.|+||+.||.++......+.+.+.+. ..++||.| .|+||.....
T Consensus 792 v~~~L~~~~Id~LVvIGGDgS~t~A~~Lae~~~~~~~~~~~~gi~VIgVPkTIDNDl~~~~te~TiGFDTA~~ 864 (1328)
T PTZ00468 792 LSQLLSFFNMRAIAIVGNSEAATFGASLSEQLICMSLNGMKSEIPVVFVPVCLENSISHQMIETCIGFDSVTK 864 (1328)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHHHHHHHHHhhhccccccCCCcEEEeCccccCCCCCCCccccccHHhHHH
Confidence 45566778999999999988866554444433221 13455555 5888877654
No 199
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=57.44 E-value=33 Score=27.21 Aligned_cols=44 Identities=11% Similarity=0.080 Sum_probs=27.4
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 50 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~ 50 (174)
..|.|..+++|.||.+++...........+.+.+. ++|++.+..
T Consensus 83 n~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~--gipvv~~~~ 126 (342)
T cd01139 83 SVEKVLTLKPDLVILNIWAKTTAEESGILEKLEQA--GIPVVFVDF 126 (342)
T ss_pred CHHHHhhcCCCEEEEeccccccchhhHHHHHHHHc--CCcEEEEeC
Confidence 47889999999998775432211122334445444 489888763
No 200
>PLN02727 NAD kinase
Probab=56.68 E-value=10 Score=34.74 Aligned_cols=34 Identities=21% Similarity=0.184 Sum_probs=25.8
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~ 52 (174)
++|.||..||-|. +++..+. ....+|||||=+|.
T Consensus 743 ~~DLVIvLGGDGT------lLrAar~~~~~~iPILGINlGr 777 (986)
T PLN02727 743 RVDFVACLGGDGV------ILHASNLFRGAVPPVVSFNLGS 777 (986)
T ss_pred CCCEEEEECCcHH------HHHHHHHhcCCCCCEEEEeCCC
Confidence 5899999999775 4455554 34679999999885
No 201
>COG0061 nadF NAD kinase [Coenzyme metabolism]
Probab=56.67 E-value=11 Score=29.59 Aligned_cols=34 Identities=18% Similarity=0.407 Sum_probs=24.5
Q ss_pred cCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHh
Q 030626 12 KNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMG 51 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G 51 (174)
..+|.+++.||-|. +++..+. ...++|++||=+|
T Consensus 54 ~~~d~ivvlGGDGt------lL~~~~~~~~~~~pilgin~G 88 (281)
T COG0061 54 EKADLIVVLGGDGT------LLRAARLLARLDIPVLGINLG 88 (281)
T ss_pred cCceEEEEeCCcHH------HHHHHHHhccCCCCEEEEeCC
Confidence 35788888888664 4455554 4456999999999
No 202
>TIGR00520 asnASE_II L-asparaginases, type II. Two related families of asparaginase (L-asparagine amidohydrolase, EC 3.5.1.1) are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity periplasmic enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type II of E. coli. Both the cytoplasmic and the cell wall asparaginases of Saccharomyces cerevisiae belong to this set. Members of this set from Acinetobacter glutaminasificans and Pseudomonas fluorescens are described as having both glutaminase and asparaginase activitities. All members are homotetrameric.
Probab=55.38 E-value=22 Score=28.92 Aligned_cols=45 Identities=13% Similarity=0.200 Sum_probs=30.5
Q ss_pred CchHHHHHHhcCCCEEEeCC-CCCCCCCcchhHHHHHH-cCCCCcEEee
Q 030626 2 SVNYLVSYCRKNPRGVLISP-GPGAPQDSGISLQTVLE-LGPTVPLFGV 48 (174)
Q Consensus 2 ~~~~~~~~~~~~~dgiii~G-G~~~~~~~~~~~~~i~~-~~~~~PilGI 48 (174)
+.+..+.+.+..++||||-| |.|+... .+.+.+.+ ..+++||.-.
T Consensus 251 ~~~ll~~~~~~g~~GlVl~g~G~Gn~p~--~~~~al~~a~~~GipVV~~ 297 (349)
T TIGR00520 251 PPLIVNAVLDAGAKGIVLAGVGNGSLSA--AGLKVNETAAKLGVPIVRS 297 (349)
T ss_pred CHHHHHHHHhCCCCEEEEEeECCCCCCH--HHHHHHHHHHHCCCEEEEE
Confidence 44556666666789999987 7776543 45555554 5667888765
No 203
>PLN02979 glycolate oxidase
Probab=55.04 E-value=68 Score=26.31 Aligned_cols=61 Identities=20% Similarity=0.256 Sum_probs=40.4
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcch----hHHHHHH-cCCCCcEE---eehHhHHHH-HHHhCCeeccC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGI----SLQTVLE-LGPTVPLF---GVCMGLQCI-GEAFGGKIVRS 66 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~----~~~~i~~-~~~~~Pil---GIC~G~Qll-~~~~gg~v~~~ 66 (174)
.....+..+|+|+++|.-|.-.+... .+..+.+ ...++||+ ||..|..++ +.++|++..-.
T Consensus 237 A~~a~~~Gvd~I~VsnhGGrqld~~p~t~~~L~ei~~~~~~~~~Vi~dGGIr~G~Di~KALALGAdaV~i 306 (366)
T PLN02979 237 ARIAIQAGAAGIIVSNHGARQLDYVPATISALEEVVKATQGRIPVFLDGGVRRGTDVFKALALGASGIFI 306 (366)
T ss_pred HHHHHhcCCCEEEECCCCcCCCCCchhHHHHHHHHHHHhCCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 34555678999999996664444332 2233333 46679988 788999887 56788766554
No 204
>PRK00153 hypothetical protein; Validated
Probab=54.86 E-value=58 Score=21.33 Aligned_cols=48 Identities=19% Similarity=0.328 Sum_probs=34.0
Q ss_pred CCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHH
Q 030626 114 DALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKM 163 (174)
Q Consensus 114 ~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~ 163 (174)
....+.+.+.++.|..+-..++. +..+.++|+.. .+.....++..+-.
T Consensus 27 ~~~~~~~~s~~G~V~V~v~G~~~-v~~i~Id~~ll-~~~d~e~LedlI~~ 74 (104)
T PRK00153 27 AQMEVEGEAGGGLVKVTMTGKKE-VKRVKIDPSLV-DPEDVEMLEDLILA 74 (104)
T ss_pred hccEEEEEECCCeEEEEEecCce-EEEEEECHHHc-CCcCHHHHHHHHHH
Confidence 35677888889999888887765 99999999974 33344444444433
No 205
>PRK03202 6-phosphofructokinase; Provisional
Probab=54.52 E-value=7 Score=31.30 Aligned_cols=54 Identities=6% Similarity=0.049 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHH-H------HHcCCCCcEEeehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQT-V------LELGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~-i------~~~~~~~PilGIC~G~Qll~~~ 58 (174)
..+.+.+++.|++|+.||.++......+.+. + ..+++++|-.=.|.|+...+..
T Consensus 85 ~~~~l~~~~Id~Li~IGGd~s~~~a~~L~e~~i~vigiPkTIDNDl~gtd~s~Gf~TA~~~ 145 (320)
T PRK03202 85 AIENLKKLGIDALVVIGGDGSYMGAKRLTEHGIPVIGLPGTIDNDIAGTDYTIGFDTALNT 145 (320)
T ss_pred HHHHHHHcCCCEEEEeCChHHHHHHHHHHhcCCcEEEecccccCCCCCCccCcCHHHHHHH
Confidence 4566777899999999998765433222110 0 0124555544558888776553
No 206
>PRK14071 6-phosphofructokinase; Provisional
Probab=53.65 E-value=16 Score=29.84 Aligned_cols=54 Identities=13% Similarity=0.073 Sum_probs=32.8
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHH--H------HHcCCCCcEEeehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQT--V------LELGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~--i------~~~~~~~PilGIC~G~Qll~~~ 58 (174)
..+.+.+++.|++|+-||.++..-...+.+. + ..+++++|.-=.|.||...+..
T Consensus 99 ~~~~l~~~~Id~Li~IGGdgS~~~a~~L~~~~~i~vIgiPkTIDNDl~~td~t~Gf~TA~~~ 160 (360)
T PRK14071 99 IIDGYHSLGLDALIGIGGDGSLAILRRLAQQGGINLVGIPKTIDNDVGATEVSIGFDTAVNI 160 (360)
T ss_pred HHHHHHHcCCCEEEEECChhHHHHHHHHHHhcCCcEEEecccccCCCcCcccCcChhHHHHH
Confidence 4566777899999999999875322111111 0 0123444444469999888764
No 207
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=53.17 E-value=17 Score=29.00 Aligned_cols=44 Identities=14% Similarity=0.277 Sum_probs=28.7
Q ss_pred CchHHHHHHhcCCCEEEeCC-CCCCCCCcchhHHHHHH-cCCCCcEEee
Q 030626 2 SVNYLVSYCRKNPRGVLISP-GPGAPQDSGISLQTVLE-LGPTVPLFGV 48 (174)
Q Consensus 2 ~~~~~~~~~~~~~dgiii~G-G~~~~~~~~~~~~~i~~-~~~~~PilGI 48 (174)
+.+..+.+. ..++||||-| |.|+ ....+.+.+.+ ..+++||.-+
T Consensus 214 ~~~~l~~~~-~~~~GlVl~~~G~Gn--~~~~~~~~l~~a~~~gipVV~~ 259 (313)
T PF00710_consen 214 DAELLDAAL-AGAKGLVLEGYGAGN--VPPALLEALARAVERGIPVVVT 259 (313)
T ss_dssp -THHHHHHH-TT-SEEEEEEBTTTB--SSHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHh-ccCCEEEEeccCCCC--CCHHHHHHHHHHHhcCceEEEe
Confidence 445666666 5799999987 7777 44555555554 4567888765
No 208
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=52.97 E-value=13 Score=29.48 Aligned_cols=34 Identities=24% Similarity=0.318 Sum_probs=24.7
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHhH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMGL 52 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G~ 52 (174)
.+|.||..||-|. +++..+. ...++|+|||-.|.
T Consensus 62 ~~d~vi~~GGDGt------~l~~~~~~~~~~~Pvlgin~G~ 96 (295)
T PRK01231 62 VCDLVIVVGGDGS------LLGAARALARHNVPVLGINRGR 96 (295)
T ss_pred CCCEEEEEeCcHH------HHHHHHHhcCCCCCEEEEeCCc
Confidence 4788888888775 3344444 35789999999885
No 209
>PRK03501 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=51.57 E-value=14 Score=28.74 Aligned_cols=33 Identities=24% Similarity=0.295 Sum_probs=24.0
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHcC--CCCcEEeehH-h
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLFGVCM-G 51 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~--~~~PilGIC~-G 51 (174)
++|.+|..||-|. +++..+... ..+|+|||-. |
T Consensus 39 ~~D~vi~lGGDGT------~L~a~~~~~~~~~~pilgIn~~G 74 (264)
T PRK03501 39 NANIIVSIGGDGT------FLQAVRKTGFREDCLYAGISTKD 74 (264)
T ss_pred CccEEEEECCcHH------HHHHHHHhcccCCCeEEeEecCC
Confidence 4789999999775 455555432 3689999999 7
No 210
>PF10230 DUF2305: Uncharacterised conserved protein (DUF2305); InterPro: IPR019363 This entry contains proteins that have no known function.
Probab=50.73 E-value=11 Score=29.13 Aligned_cols=35 Identities=23% Similarity=0.310 Sum_probs=29.8
Q ss_pred CEEEeCCCCCCCCCcchhHHHHHHc-CCCCcEEeeh
Q 030626 15 RGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVC 49 (174)
Q Consensus 15 dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PilGIC 49 (174)
--++|||=||-+.-+..+++.+++. ..+.+|+||-
T Consensus 4 li~~IPGNPGlv~fY~~Fl~~L~~~l~~~~~i~~is 39 (266)
T PF10230_consen 4 LIVFIPGNPGLVEFYEEFLSALYEKLNPQFEILGIS 39 (266)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHhCCCCCeeEEec
Confidence 3688999999888888888888874 7899999986
No 211
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=50.63 E-value=57 Score=21.38 Aligned_cols=40 Identities=13% Similarity=0.124 Sum_probs=25.7
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHh
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 51 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G 51 (174)
-.|++..+++|.|+..++.... ..+.+.+.+ +|++-+..+
T Consensus 53 ~~E~l~~l~pDlvi~~~~~~~~-----~~~~l~~~~--i~~~~~~~~ 92 (148)
T cd00636 53 NLEKIAALKPDLIIANGSGLEA-----WLDKLSKIA--IPVVVVDEA 92 (148)
T ss_pred CHHHHhccCCCEEEEecccchh-----HHHHHHHhC--CCEEEECCC
Confidence 3678888899999877653321 334444444 788777665
No 212
>PRK01185 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=50.47 E-value=15 Score=28.68 Aligned_cols=31 Identities=29% Similarity=0.516 Sum_probs=23.3
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHh
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 51 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G 51 (174)
++|.+|..||-|. +++..+... .|+|||-.|
T Consensus 52 ~~D~vi~lGGDGT------~L~a~~~~~--~PilGIN~G 82 (271)
T PRK01185 52 NADVIITIGGDGT------ILRTLQRAK--GPILGINMG 82 (271)
T ss_pred CCCEEEEEcCcHH------HHHHHHHcC--CCEEEEECC
Confidence 5789999999775 345555443 599999988
No 213
>smart00852 MoCF_biosynth Probable molybdopterin binding domain. This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor. The domain is presumed to bind molybdopterin. The structure of this domain is known, and it forms an alpha/beta structure. In the known structure of Gephyrin this domain mediates trimerisation.
Probab=50.29 E-value=32 Score=23.38 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=17.0
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHc
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLEL 39 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~ 39 (174)
.+|.||.+||-+ +...+...+.+.+.
T Consensus 57 ~~dliittGG~g-~g~~D~t~~~l~~~ 82 (135)
T smart00852 57 RADLVITTGGTG-PGPDDVTPEAVAEA 82 (135)
T ss_pred CCCEEEEcCCCC-CCCCcCcHHHHHHH
Confidence 589999999977 44444444555443
No 214
>PRK11096 ansB L-asparaginase II; Provisional
Probab=49.73 E-value=33 Score=27.88 Aligned_cols=44 Identities=11% Similarity=0.040 Sum_probs=28.6
Q ss_pred chHHHHHHhcCCCEEEeCC-CCCCCCCcchhHHHHHH-cCCCCcEEee
Q 030626 3 VNYLVSYCRKNPRGVLISP-GPGAPQDSGISLQTVLE-LGPTVPLFGV 48 (174)
Q Consensus 3 ~~~~~~~~~~~~dgiii~G-G~~~~~~~~~~~~~i~~-~~~~~PilGI 48 (174)
.+..+.+.+..++||||-| |.|+. ...+.+.+.+ ..+++||.-+
T Consensus 246 ~~~l~~~l~~~~~GiVl~g~G~Gn~--~~~~~~~l~~a~~~GipVV~~ 291 (347)
T PRK11096 246 DLPAKALVDAGYDGIVSAGVGNGNL--YKTVFDTLATAAKNGVAVVRS 291 (347)
T ss_pred HHHHHHHHhccCCEEEEEeECCCCC--CHHHHHHHHHHHHCCCEEEEe
Confidence 3455555555689999987 77764 3345566655 5667888753
No 215
>TIGR00519 asnASE_I L-asparaginases, type I. Two related families of asparaginase are designated type I and type II according to the terminology in E. coli, which has both: L-asparaginase I is a low-affinity enzyme found in the cytoplasm, while L-asparaginase II is a high-affinity secreted enzyme synthesized with a cleavable signal sequence. This model describes L-asparaginases related to type I of E. coli. Archaeal putative asparaginases are of this type but contain an extra ~ 80 residues in a conserved N-terminal region. These archaeal homologs are included in this model.
Probab=49.72 E-value=34 Score=27.61 Aligned_cols=45 Identities=24% Similarity=0.311 Sum_probs=30.4
Q ss_pred CchHHHHHHhcCCCEEEeCC-CCCCCCCcchhHHHHHH-cCCCCcEEee
Q 030626 2 SVNYLVSYCRKNPRGVLISP-GPGAPQDSGISLQTVLE-LGPTVPLFGV 48 (174)
Q Consensus 2 ~~~~~~~~~~~~~dgiii~G-G~~~~~~~~~~~~~i~~-~~~~~PilGI 48 (174)
+.+..+.+.+..++||||-| |.|+... .+...+.+ ..+++||.=+
T Consensus 224 ~~~~l~~~~~~~~~GiVl~~~G~Gn~p~--~~~~~l~~a~~~Gi~VV~~ 270 (336)
T TIGR00519 224 SPDIIRNYLSKGYKGIVIEGTGLGHAPQ--NKLQELQEASDRGVVVVMT 270 (336)
T ss_pred CHHHHHHHHhCCCCEEEEeeECCCCCCH--HHHHHHHHHHHCCCEEEEe
Confidence 44556666666789999998 8887653 23455544 5667888765
No 216
>COG0252 AnsB L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D [Amino acid transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=48.25 E-value=35 Score=27.82 Aligned_cols=44 Identities=9% Similarity=0.243 Sum_probs=29.2
Q ss_pred chHHH-HHHhcCCCEEEeCC-CCCCCCCcchhHHHHHH-cCCCCcEEee
Q 030626 3 VNYLV-SYCRKNPRGVLISP-GPGAPQDSGISLQTVLE-LGPTVPLFGV 48 (174)
Q Consensus 3 ~~~~~-~~~~~~~dgiii~G-G~~~~~~~~~~~~~i~~-~~~~~PilGI 48 (174)
.+..+ .+.+..++||||-| |.| +....+++.+.+ ..+++||.=+
T Consensus 243 ~~~i~~a~~~~g~~GiVie~~G~G--~~~~~~~~~i~~~~~~gi~VV~s 289 (351)
T COG0252 243 SSLIDSALLSSGAKGLVLEGTGSG--NVTPALIESIERASKRGIPVVYS 289 (351)
T ss_pred HHHHHHHHHhcCCCEEEEEEECCC--CCChHHHHHHHHHHHCCCeEEEE
Confidence 33455 35567899999988 666 445556666665 5677887644
No 217
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain. LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer.
Probab=47.70 E-value=95 Score=25.63 Aligned_cols=61 Identities=26% Similarity=0.395 Sum_probs=39.0
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcch----hHHHHHH-cCCCCcEE---eehHhHHHH-HHHhCCeeccC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGI----SLQTVLE-LGPTVPLF---GVCMGLQCI-GEAFGGKIVRS 66 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~----~~~~i~~-~~~~~Pil---GIC~G~Qll-~~~~gg~v~~~ 66 (174)
.....+..+|+|++++..|...+... .+..+.+ ...++||+ ||-.|.-++ +.++|+...-.
T Consensus 267 A~~a~~~G~d~I~vsnhGGr~~d~~~~t~~~L~ei~~~~~~~~~vi~dGGIr~G~Dv~KALaLGA~~v~i 336 (383)
T cd03332 267 ARRAVEAGVDGVVVSNHGGRQVDGSIAALDALPEIVEAVGDRLTVLFDSGVRTGADIMKALALGAKAVLI 336 (383)
T ss_pred HHHHHHCCCCEEEEcCCCCcCCCCCcCHHHHHHHHHHHhcCCCeEEEeCCcCcHHHHHHHHHcCCCEEEE
Confidence 33455578999999987665444322 2334433 55679988 677788877 45777665444
No 218
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional
Probab=47.19 E-value=57 Score=25.73 Aligned_cols=46 Identities=15% Similarity=0.149 Sum_probs=29.1
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcc-----hhHHHHHH-cCCCCcEE-eehH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLF-GVCM 50 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~~~~Pil-GIC~ 50 (174)
..+.+.+..+|||++.|+.|-...-. .+++...+ ...++|++ |++.
T Consensus 33 li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~ 85 (303)
T PRK03620 33 HLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGG 85 (303)
T ss_pred HHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCC
Confidence 44555556799999999877554222 23344433 56779987 7763
No 219
>PTZ00287 6-phosphofructokinase; Provisional
Probab=46.01 E-value=17 Score=34.79 Aligned_cols=51 Identities=14% Similarity=0.312 Sum_probs=32.9
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCc--EEe---------------ehHhHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVP--LFG---------------VCMGLQCIGE 57 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~P--ilG---------------IC~G~Qll~~ 57 (174)
..+.+.+++.|++|+.||.++......+.+.+.+. ++| |.| .|+||...+.
T Consensus 920 a~~~lk~l~ID~LVvIGGDgS~t~A~~LaE~f~~~--gi~i~VIGVPkTIDNDL~~~~tD~TiGFDTAv~ 987 (1419)
T PTZ00287 920 VCETVTNLQLNGLVMPGSNVTITEAALLAEYFLEK--KIPTSVVGIPLTGSNNLIHELIETCVGFDSSTK 987 (1419)
T ss_pred HHHHHHHhCCCEEEEECCchHHHHHHHHHHHHHhc--CCCccEEEeCceeeCCCCCCCCcCCCCHHHHHH
Confidence 34567778999999999988865544443332222 233 433 5899987765
No 220
>PRK14048 ferrichrome/ferrioxamine B periplasmic transporter; Provisional
Probab=45.90 E-value=73 Score=25.79 Aligned_cols=45 Identities=7% Similarity=0.071 Sum_probs=26.5
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHh
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 51 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G 51 (174)
-.|.|..+++|.||+++............+.+.+. ++|++-+..+
T Consensus 113 n~E~Ilal~PDLVi~~~~~~~~~~~~~~~~~L~~~--Gipvv~~~~~ 157 (374)
T PRK14048 113 SFETILTLKADLAILANWQADTEAGQRAIEYLESI--GVPVIVVDFN 157 (374)
T ss_pred CHHHHhhcCCCEEEecCcccccccchhHHHHHHHC--CCCEEEEeCC
Confidence 36889999999998764322111112233444444 4899888643
No 221
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=45.77 E-value=61 Score=26.42 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=28.0
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcch-----hHHHHHHc-CCCCcEEeehH
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGI-----SLQTVLEL-GPTVPLFGVCM 50 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~-----~~~~i~~~-~~~~PilGIC~ 50 (174)
.+...+.++|.||++|--.+...... +.+.++++ ..++||+.|=.
T Consensus 33 l~~a~~~~vD~vliAGDlFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~G 83 (390)
T COG0420 33 LEIAKEEKVDFVLIAGDLFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAG 83 (390)
T ss_pred HHHHHHccCCEEEEccccccCCCCCHHHHHHHHHHHHHhccCCCcEEEecC
Confidence 44556678999999876554433322 23444443 46899998864
No 222
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=44.96 E-value=53 Score=27.46 Aligned_cols=44 Identities=14% Similarity=0.411 Sum_probs=34.6
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhH-HHHHHcCCCCcEEeeh
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISL-QTVLELGPTVPLFGVC 49 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~-~~i~~~~~~~PilGIC 49 (174)
...+.|.+.+.|++|+++.=|..+..+..+ +.|.+ .++|+.=||
T Consensus 327 eIa~~Lk~dgVDAVILTstCgtC~r~~a~m~keiE~--~GiPvv~~~ 371 (431)
T TIGR01918 327 EFVVELKQGGVDAVILTSTUGTCTRCGATMVKEIER--AGIPVVHMC 371 (431)
T ss_pred HHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHH--cCCCEEEEe
Confidence 456677778899999999988888888766 44444 469999999
No 223
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=44.01 E-value=36 Score=25.28 Aligned_cols=11 Identities=18% Similarity=0.655 Sum_probs=9.1
Q ss_pred cCCCCcEEeeh
Q 030626 39 LGPTVPLFGVC 49 (174)
Q Consensus 39 ~~~~~PilGIC 49 (174)
..-++|+.|||
T Consensus 128 ~~l~IP~Iai~ 138 (196)
T TIGR01012 128 SEVGIPIVALC 138 (196)
T ss_pred HHcCCCEEEEe
Confidence 44569999999
No 224
>COG1597 LCB5 Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]
Probab=43.82 E-value=30 Score=27.41 Aligned_cols=24 Identities=13% Similarity=0.106 Sum_probs=19.1
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCC
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQ 27 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~ 27 (174)
++.+++....+|.||..||-|..+
T Consensus 49 ~~a~~a~~~~~D~via~GGDGTv~ 72 (301)
T COG1597 49 EIAREAAVEGYDTVIAAGGDGTVN 72 (301)
T ss_pred HHHHHHHhcCCCEEEEecCcchHH
Confidence 456677777899999999988754
No 225
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=43.78 E-value=19 Score=32.35 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=33.7
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHc-CCCCcEEe-------------ehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFG-------------VCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PilG-------------IC~G~Qll~~~ 58 (174)
..+.+.+++.|++|+.||.++......+.+.-... ..++|+.| .|.|+...+..
T Consensus 470 i~~~l~~~~Id~LivIGGdgs~~~a~~L~~~~~~~~~~~i~vvgIPkTIDNDi~gtd~t~GfdTA~~~ 537 (745)
T TIGR02478 470 IAYYFQKHKIDGLLIIGGFEAFEALLQLEQAREKYPAFRIPMVVIPATISNNVPGTEYSLGSDTALNE 537 (745)
T ss_pred HHHHHHHcCCCEEEEeCChHHHHHHHHHHHHHhhCCCCCccEEEecccccCCCCCCccCCCHHHHHHH
Confidence 45677788999999999988644333322211111 13466665 59999887654
No 226
>PF03575 Peptidase_S51: Peptidase family S51; InterPro: IPR005320 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S51 (clan PC(S)). The type example being dipeptidase E (alpha-aspartyl dipeptidase) from Escherichia coli. The family contains alpha-aspartyl dipeptidases (dipeptidase E) and cyanophycinases. The three-dimensional structure of Salmonella typhimurium aspartyl dipeptidase, peptidase E has been determine at 1.2-A resolution. The structure of this 25kDa enzyme consists of two mixed beta-sheets forming a V, flanked by six alpha-helices. The active site contains a Ser-His-Glu catalytic triad and is the first example of a serine peptidase/protease with a glutamate in the catalytic triad. The active site Ser is located on a strand-helix motif reminiscent of that found in alpha/beta-hydrolases, but the polypeptide fold and the organisation of the catalytic triad differ from those of the known serine proteases. This enzyme appears to represent a new example of convergent evolution of peptidase activity []. Alpha-aspartyl dipeptidase hydrolyses dipeptides containing N-terminal aspartate residues, asp-|-xaa. It does not act on peptides with N-terminal Glu, Asn or Gln, nor does it cleave isoaspartyl peptides. In the cyanobacteria, cyanophycinase is an exopeptidase that catalyses the hydrolytic cleavage of multi-l-arginyl-poly-l-aspartic acid (cyanophycin; a water- insoluble reserve polymer) into aspartate-arginine dipeptides.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 3EN0_B 1FYE_A 1FY2_A 3L4E_A.
Probab=43.67 E-value=9.9 Score=26.70 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=25.7
Q ss_pred CCCEEEeCCCCCCCC----CcchhHHHHHH-cCCCCcEEeehHhHHH
Q 030626 13 NPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQC 54 (174)
Q Consensus 13 ~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PilGIC~G~Ql 54 (174)
+.|+|+++||.-... ....+...|++ ..++.++.|+-.|.-+
T Consensus 35 ~ad~I~~~GG~~~~l~~~l~~t~l~~~i~~~~~~G~vi~G~SAGA~i 81 (154)
T PF03575_consen 35 EADAIFLGGGDTFRLLRQLKETGLDEAIREAYRKGGVIIGTSAGAMI 81 (154)
T ss_dssp HSSEEEE--S-HHHHHHHHHHTTHHHHHHHHHHTTSEEEEETHHHHC
T ss_pred hCCEEEECCCCHHHHHHHHHhCCHHHHHHHHHHCCCEEEEEChHHhh
Confidence 579999999943221 11123455554 5677999999999855
No 227
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=42.56 E-value=60 Score=23.12 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=24.5
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 48 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI 48 (174)
-.|.+..+++|.||..++.... ...+.+.+.+ +|++-|
T Consensus 61 n~E~ll~l~PDlii~~~~~~~~----~~~~~l~~~g--Ipvv~i 98 (186)
T cd01141 61 NVELIVALKPDLVILYGGFQAQ----TILDKLEQLG--IPVLYV 98 (186)
T ss_pred CHHHHhccCCCEEEEecCCCch----hHHHHHHHcC--CCEEEe
Confidence 3688999999999986543221 2334444444 888776
No 228
>TIGR02478 6PF1K_euk 6-phosphofructokinase, eukaryotic type. Members of this family are eukaryotic (with one exception) ATP-dependent 6-phosphofructokinases (EC 2.7.1.11) in which two tandem copies of the phosphofructokinase are found. Members are found, often including several isozymes, in animals and fungi and in the bacterium Propionibacterium acnes KPA171202 (a human skin commensal).
Probab=41.45 E-value=22 Score=32.01 Aligned_cols=26 Identities=8% Similarity=0.185 Sum_probs=20.4
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCc
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDS 29 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~ 29 (174)
+..+.+.+++.|++|+.||.++....
T Consensus 85 ~~~~~L~~~~Id~LivIGGdgS~~~a 110 (745)
T TIGR02478 85 KAARNLIKRGIDNLVVIGGDGSLTGA 110 (745)
T ss_pred HHHHHHHHhCCCEEEEECChhHHHHH
Confidence 34566788899999999999986543
No 229
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=41.44 E-value=89 Score=20.94 Aligned_cols=14 Identities=21% Similarity=0.252 Sum_probs=5.7
Q ss_pred HHHHhcCCCEEEeC
Q 030626 7 VSYCRKNPRGVLIS 20 (174)
Q Consensus 7 ~~~~~~~~dgiii~ 20 (174)
+++.+.+..|+++-
T Consensus 66 ~~L~~~~~agL~i~ 79 (123)
T PF07905_consen 66 RELAEKGAAGLGIK 79 (123)
T ss_pred HHHHHCCCeEEEEe
Confidence 33333344444443
No 230
>PF02575 YbaB_DNA_bd: YbaB/EbfC DNA-binding family; InterPro: IPR004401 The function of this protein is unknown. It is restricted to bacteria and a few plants, such as Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A crystal structure of one member, YbaB from Haemophilus influenzae, revealed a core structure consisting of two layers, alpha/beta; YbaB forms a tight dimer with a 3-layer structure, beta/alpha/beta []. YbaB is co-transcribed with RecR, which appears to protect DNA strands of the replilcation fork when it is blocked by DNA damage. A deletion of the YbaB operon resulted in increased sensitivity to DNA-damaging agents compared with the wild-type strain.; PDB: 1PUG_B 3F42_B 1YBX_B 1J8B_A.
Probab=41.09 E-value=91 Score=19.62 Aligned_cols=34 Identities=21% Similarity=0.398 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcC
Q 030626 115 ALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESII 149 (174)
Q Consensus 115 ~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~ 149 (174)
..++.+++.++.|......++. +..+.++|+...
T Consensus 20 ~~~~~~~s~~g~V~V~v~g~g~-v~~i~i~~~~~~ 53 (93)
T PF02575_consen 20 EIEVTGTSGDGLVTVTVNGNGE-VVDIEIDPSALR 53 (93)
T ss_dssp HSEEEEEETCCTEEEEEETTS--EEEEEE-GGGGC
T ss_pred cCEEEEEECCCEEEEEEecCce-EEEEEEehHhhc
Confidence 3567888999999888887765 999999999853
No 231
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=40.97 E-value=58 Score=25.25 Aligned_cols=40 Identities=25% Similarity=0.325 Sum_probs=23.1
Q ss_pred HhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHh
Q 030626 10 CRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 51 (174)
Q Consensus 10 ~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G 51 (174)
....+|||+++|..--.......++.+++... +|+| +.-|
T Consensus 169 ~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~-~PVl-vGSG 208 (254)
T PF03437_consen 169 ERGGADAVIVTGKATGEPPDPEKLKRVREAVP-VPVL-VGSG 208 (254)
T ss_pred HhcCCCEEEECCcccCCCCCHHHHHHHHhcCC-CCEE-EecC
Confidence 34469999999864322222333455565444 8987 4433
No 232
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=40.25 E-value=71 Score=26.77 Aligned_cols=44 Identities=11% Similarity=0.354 Sum_probs=34.3
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhH-HHHHHcCCCCcEEeeh
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISL-QTVLELGPTVPLFGVC 49 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~-~~i~~~~~~~PilGIC 49 (174)
...+.|.+.+.|++|+++.=|..+.....+ +.|.+ .++|+.=||
T Consensus 327 eIa~~Lk~dgVDAvILtstCgtCtrcga~m~keiE~--~GIPvV~i~ 371 (431)
T TIGR01917 327 EFSKELLAAGVDAVILTSTUGTCTRCGATMVKEIER--AGIPVVHIC 371 (431)
T ss_pred HHHHHHHHcCCCEEEEcCCCCcchhHHHHHHHHHHH--cCCCEEEEe
Confidence 355677778899999999888888888766 44444 469999999
No 233
>COG0205 PfkA 6-phosphofructokinase [Carbohydrate transport and metabolism]
Probab=39.91 E-value=18 Score=29.32 Aligned_cols=52 Identities=8% Similarity=0.087 Sum_probs=31.6
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHH--------HHcCCCCcEEeehHhHHHHHH
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTV--------LELGPTVPLFGVCMGLQCIGE 57 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i--------~~~~~~~PilGIC~G~Qll~~ 57 (174)
.+.+.+++.|++|+-||.||-.....+.+.. ..+++.++..=.|.||..-+.
T Consensus 87 ~~~l~~~gId~LvvIGGDgS~~gA~~Lae~~~i~vVGvPkTIDNDi~~td~tiGfdTA~~ 146 (347)
T COG0205 87 AENLKKLGIDALVVIGGDGSYTGAALLAEEGGIPVVGVPKTIDNDISGTDFTIGFDTALE 146 (347)
T ss_pred HHHHHHcCCCEEEEECCCChHHHHHHHHHhcCCcEEecCCCccCCCcccccCccHHHHHH
Confidence 4567778999999999988744322221111 012344555556888877654
No 234
>PRK02645 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.82 E-value=30 Score=27.44 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=23.5
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCM 50 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~ 50 (174)
.+|.+|..||-|. +++.++. ...++|++||-.
T Consensus 57 ~~d~vi~~GGDGT------~l~~~~~~~~~~~pv~gin~ 89 (305)
T PRK02645 57 LIDLAIVLGGDGT------VLAAARHLAPHDIPILSVNV 89 (305)
T ss_pred CcCEEEEECCcHH------HHHHHHHhccCCCCEEEEec
Confidence 4788888888775 3455554 356899999987
No 235
>PRK15076 alpha-galactosidase; Provisional
Probab=39.82 E-value=78 Score=26.50 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=36.0
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhH----HHHHHHhCCeeccCC---Ccccccccc
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGL----QCIGEAFGGKIVRSP---LGVMHGKSS 76 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~----Qll~~~~gg~v~~~~---~~~~~~~~~ 76 (174)
++.+++.++.+|+++|-= .+|- +-.-..++.. .+..++|+|-|. ..|+..+|-...... .+.+|..|.
T Consensus 129 ~i~~~i~~~~p~a~iin~--tNP~--divt~~~~~~-~~~rviG~c~~~~~~~~~ia~~l~v~~~~v~~~~~GlNH~~W~ 203 (431)
T PRK15076 129 DICEDMEEVCPDALLLNY--VNPM--AMNTWAMNRY-PGIKTVGLCHSVQGTAEQLARDLGVPPEELRYRCAGINHMAWY 203 (431)
T ss_pred HHHHHHHHHCCCeEEEEc--CChH--HHHHHHHhcC-CCCCEEEECCCHHHHHHHHHHHhCCCHHHeEEEEEeecchhhh
Confidence 345667777788888741 1111 1112233333 567899999444 456667765433322 233455553
No 236
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=39.10 E-value=1.1e+02 Score=22.93 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=32.2
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHh---------HHHHHHHhCC
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG---------LQCIGEAFGG 61 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G---------~Qll~~~~gg 61 (174)
-.|.|..+++|.||..++.... .....+.+. .++|++-+... ...|+.++|.
T Consensus 66 n~E~i~~l~PDLIi~~~~~~~~----~~~~~l~~~-~gipvv~~~~~~~~~~~~~~i~~lg~~~g~ 126 (262)
T cd01147 66 NYEKIAALKPDVVIDVGSDDPT----SIADDLQKK-TGIPVVVLDGGDSLEDTPEQIRLLGKVLGK 126 (262)
T ss_pred CHHHHHhcCCCEEEEecCCccc----hhHHHHHHh-hCCCEEEEecCCchHhHHHHHHHHHHHhCC
Confidence 4688889999999976543211 122333331 45899888865 4455666664
No 237
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=39.07 E-value=67 Score=24.80 Aligned_cols=43 Identities=21% Similarity=0.233 Sum_probs=26.9
Q ss_pred HHHHHhcCCCEEEeCCC-CCCCCCcchhHHHHHHcCCCCcEE---eehH
Q 030626 6 LVSYCRKNPRGVLISPG-PGAPQDSGISLQTVLELGPTVPLF---GVCM 50 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG-~~~~~~~~~~~~~i~~~~~~~Pil---GIC~ 50 (174)
.+.+.+..+|+||++|- -|++-|..++ +.+.+.. +.|+| |+|.
T Consensus 170 ~dtver~~aDaVI~tG~~TG~~~d~~el-~~a~~~~-~~pvlvGSGv~~ 216 (263)
T COG0434 170 KDTVERGLADAVIVTGSRTGSPPDLEEL-KLAKEAV-DTPVLVGSGVNP 216 (263)
T ss_pred HHHHHccCCCEEEEecccCCCCCCHHHH-HHHHhcc-CCCEEEecCCCH
Confidence 34466667999999994 4455444443 4444433 39988 6776
No 238
>PRK09417 mogA molybdenum cofactor biosynthesis protein MogA; Provisional
Probab=38.83 E-value=58 Score=24.07 Aligned_cols=31 Identities=23% Similarity=0.384 Sum_probs=18.4
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCc
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVP 44 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~P 44 (174)
++|.||.+||-+ +.+.+...+.+.+ .+..+|
T Consensus 66 ~~DlIITTGGtg-~g~rDvTpeAv~~l~~keip 97 (193)
T PRK09417 66 GCDLVLTTGGTG-PARRDVTPEATLAVADKEMP 97 (193)
T ss_pred CCCEEEECCCCC-CCCCCcHHHHHHHHhCCcCC
Confidence 689999999855 3344444445444 443344
No 239
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=38.55 E-value=48 Score=29.60 Aligned_cols=51 Identities=18% Similarity=0.262 Sum_probs=31.7
Q ss_pred CceeecccccceecccCCCCCCcEEEEE----------cCCCceEEEeeCCCCceEEEecCCC
Q 030626 94 NPFTAGRYHSLVIEKESFPSDALEVTAW----------TEDGLIMAARHKKYKHLQGVQFHPE 146 (174)
Q Consensus 94 ~~~~~~~~H~~~v~~~~l~~~~~~~~a~----------s~~~~i~a~~~~~~~~~~g~QfHPE 146 (174)
.++..+.-|...|---++...+|-+.+. +.+.-+..|.|.+ ++.++||||-
T Consensus 360 kP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hnd--fVTcVaFnPv 420 (712)
T KOG0283|consen 360 KPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHND--FVTCVAFNPV 420 (712)
T ss_pred cchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEecCC--eeEEEEeccc
Confidence 4566677777665332344445544443 2233367788887 6999999996
No 240
>PF00365 PFK: Phosphofructokinase; InterPro: IPR000023 The enzyme-catalysed transfer of a phosphoryl group from ATP is an important reaction in a wide variety of biological processes []. One enzyme that utilises this reaction is phosphofructokinase (PFK), which catalyses the phosphorylation of fructose-6-phosphate to fructose-1,6- bisphosphate, a key regulatory step in the glycolytic pathway [, ]. PFK exists as a homotetramer in bacteria and mammals (where each monomer possesses 2 similar domains), and as an octomer in yeast (where there are 4 alpha- (PFK1) and 4 beta-chains (PFK2), the latter, like the mammalian monomers, possessing 2 similar domains []). PFK is ~300 amino acids in length, and structural studies of the bacterial enzyme have shown it comprises two similar (alpha/beta) lobes: one involved in ATP binding and the other housing both the substrate-binding site and the allosteric site (a regulatory binding site distinct from the active site, but that affects enzyme activity). The identical tetramer subunits adopt 2 different conformations: in a 'closed' state, the bound magnesium ion bridges the phosphoryl groups of the enzyme products (ADP and fructose-1,6- bisphosphate); and in an 'open' state, the magnesium ion binds only the ADP [], as the 2 products are now further apart. These conformations are thought to be successive stages of a reaction pathway that requires subunit closure to bring the 2 molecules sufficiently close to react []. Deficiency in PFK leads to glycogenosis type VII (Tauri's disease), an autosomal recessive disorder characterised by severe nausea, vomiting, muscle cramps and myoglobinuria in response to bursts of intense or vigorous exercise []. Sufferers are usually able to lead a reasonably ordinary life by learning to adjust activity levels [].; GO: 0003872 6-phosphofructokinase activity, 0006096 glycolysis, 0005945 6-phosphofructokinase complex; PDB: 3O8O_E 3OPY_H 1PFK_A 2PFK_D 1MTO_F 3U39_C 6PFK_A 4PFK_A 3PFK_A 3HNO_B ....
Probab=38.15 E-value=8.2 Score=30.31 Aligned_cols=54 Identities=7% Similarity=0.094 Sum_probs=31.4
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHH--------HcCCCCcEEeehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVL--------ELGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~--------~~~~~~PilGIC~G~Qll~~~ 58 (174)
..+.+.+++.|++|+.||.++......+.+... .+++++|--=-|.||..-+..
T Consensus 84 ~~~~l~~~~Id~Li~IGG~gs~~~a~~L~~~~~i~vigiPkTIDNDi~gtd~siGf~TA~~~ 145 (282)
T PF00365_consen 84 IVENLKKLGIDALIVIGGDGSMKGAHKLSEEFGIPVIGIPKTIDNDIPGTDYSIGFDTAVNY 145 (282)
T ss_dssp HHHHHHHTTESEEEEEESHHHHHHHHHHHHHHHSEEEEEEEETTSSCTTSSS-BTHHHHHHH
T ss_pred HHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCceEEEEEeccccCCcCCCCCCcccCchhHH
Confidence 456677889999999999776433222211111 013444443358898887654
No 241
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=38.10 E-value=70 Score=24.85 Aligned_cols=46 Identities=22% Similarity=0.299 Sum_probs=24.8
Q ss_pred cCCCEEEeCC-CCCCCCCcchhHHHHHHcCCCCcEE-eehHhHHHHHHH
Q 030626 12 KNPRGVLISP-GPGAPQDSGISLQTVLELGPTVPLF-GVCMGLQCIGEA 58 (174)
Q Consensus 12 ~~~dgiii~G-G~~~~~~~~~~~~~i~~~~~~~Pil-GIC~G~Qll~~~ 58 (174)
..+||||++| |.|.+.+... ++.+++....+|+| |-.....-+.++
T Consensus 170 ~~aDavivtG~~TG~~~d~~~-l~~vr~~~~~~PvllggGvt~eNv~e~ 217 (257)
T TIGR00259 170 GLADAVILSGKTTGTEVDLEL-LKLAKETVKDTPVLAGSGVNLENVEEL 217 (257)
T ss_pred cCCCEEEECcCCCCCCCCHHH-HHHHHhccCCCeEEEECCCCHHHHHHH
Confidence 3489999998 5555544433 34444434456753 433334444333
No 242
>PRK11197 lldD L-lactate dehydrogenase; Provisional
Probab=38.00 E-value=1.5e+02 Score=24.43 Aligned_cols=61 Identities=20% Similarity=0.304 Sum_probs=38.1
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcc-h---hHHHHHH-cCCCCcEE---eehHhHHHH-HHHhCCeeccC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSG-I---SLQTVLE-LGPTVPLF---GVCMGLQCI-GEAFGGKIVRS 66 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~-~---~~~~i~~-~~~~~Pil---GIC~G~Qll-~~~~gg~v~~~ 66 (174)
...+.+..+|+|+++|..|...+.. . .+..+.+ ...++||+ ||-.|..++ +.++|++..-.
T Consensus 259 A~~a~~~Gvd~I~Vs~hGGr~~d~~~~t~~~L~~i~~a~~~~~~vi~dGGIr~g~Di~KALaLGA~~V~i 328 (381)
T PRK11197 259 ARDAVRFGADGIVVSNHGGRQLDGVLSSARALPAIADAVKGDITILADSGIRNGLDVVRMIALGADTVLL 328 (381)
T ss_pred HHHHHhCCCCEEEECCCCCCCCCCcccHHHHHHHHHHHhcCCCeEEeeCCcCcHHHHHHHHHcCcCceeE
Confidence 3455567899999998666543321 1 2233333 45679998 677888777 55677655443
No 243
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related. These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A ....
Probab=37.92 E-value=99 Score=25.19 Aligned_cols=62 Identities=23% Similarity=0.331 Sum_probs=37.7
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcch----hHHHHHH-cCCCCcEE---eehHhHHHH-HHHhCCeeccCC
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGI----SLQTVLE-LGPTVPLF---GVCMGLQCI-GEAFGGKIVRSP 67 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~----~~~~i~~-~~~~~Pil---GIC~G~Qll-~~~~gg~v~~~~ 67 (174)
...+.+..+|+|+++|--|.-.|... .+..+++ ...++||+ ||..|.-++ +.++|++..-..
T Consensus 239 a~~~~~~G~~~i~vs~hGGr~~d~~~~~~~~L~~i~~~~~~~~~i~~dgGir~g~Dv~kalaLGA~~v~ig 309 (356)
T PF01070_consen 239 AKRAVDAGVDGIDVSNHGGRQLDWGPPTIDALPEIRAAVGDDIPIIADGGIRRGLDVAKALALGADAVGIG 309 (356)
T ss_dssp HHHHHHTT-SEEEEESGTGTSSTTS-BHHHHHHHHHHHHTTSSEEEEESS--SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHhcCCCEEEecCCCcccCccccccccccHHHHhhhcCCeeEEEeCCCCCHHHHHHHHHcCCCeEEEc
Confidence 34556678999999974443333322 2344444 66789998 788999777 678888776543
No 244
>COG1609 PurR Transcriptional regulators [Transcription]
Probab=37.50 E-value=70 Score=25.54 Aligned_cols=18 Identities=22% Similarity=0.445 Sum_probs=15.0
Q ss_pred hHHHHHHhcCCCEEEeCC
Q 030626 4 NYLVSYCRKNPRGVLISP 21 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~G 21 (174)
.+.+.+...++||||+.|
T Consensus 105 ~~~~~l~~~~vdGiIi~~ 122 (333)
T COG1609 105 EYLETLLQKRVDGLILLG 122 (333)
T ss_pred HHHHHHHHcCCCEEEEec
Confidence 456778888999999998
No 245
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=37.02 E-value=75 Score=26.95 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=29.7
Q ss_pred chHHHHHHhcCCCEEEeCCCCCCCCCcc--hhHHHHHHcCCCCcEE
Q 030626 3 VNYLVSYCRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLF 46 (174)
Q Consensus 3 ~~~~~~~~~~~~dgiii~GG~~~~~~~~--~~~~~i~~~~~~~Pil 46 (174)
.+..++|...++|.|+|+||-..-...- ...+.+.+..-+.||+
T Consensus 110 ~~~l~~I~~~~PDIILLaGGtDGG~~e~~l~NA~~La~~~~~~pII 155 (463)
T TIGR01319 110 NKDIEAIEESNLDIILFAGGTDGGEEECGIHNAKMLAEHGLDCAII 155 (463)
T ss_pred HHHHHHHhhcCCCEEEEeCCcCCCchHHHHHHHHHHHhcCCCCcEE
Confidence 4567888889999999999965433222 1224445566778876
No 246
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=36.59 E-value=66 Score=25.91 Aligned_cols=39 Identities=21% Similarity=0.248 Sum_probs=23.5
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcc-------hhHHHHHHcCCCCcEEeeh
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSG-------ISLQTVLELGPTVPLFGVC 49 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~-------~~~~~i~~~~~~~PilGIC 49 (174)
.++++. +.|-|||. |||++-+- .+.+.+++ ..-|+++||
T Consensus 183 aveAI~--~AD~IviG--PgSl~TSIlP~Lllp~I~eaLr~--~~ap~i~v~ 228 (323)
T COG0391 183 AVEAIK--EADLIVIG--PGSLFTSILPILLLPGIAEALRE--TVAPIVYVC 228 (323)
T ss_pred HHHHHH--hCCEEEEc--CCccHhhhchhhchhHHHHHHHh--CCCCEEEec
Confidence 455555 46889985 55554331 12233444 679999999
No 247
>PF13941 MutL: MutL protein
Probab=36.38 E-value=73 Score=26.98 Aligned_cols=44 Identities=16% Similarity=0.224 Sum_probs=27.1
Q ss_pred chHHHHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHHcCCCCcEE
Q 030626 3 VNYLVSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLF 46 (174)
Q Consensus 3 ~~~~~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~Pil 46 (174)
..-.++|...++|.|+|+||-..-....- ..+.+.+..-++||+
T Consensus 114 ~~~l~~i~~~~PDiILLaGGtDgG~~~~il~nA~~La~~~~~~pVI 159 (457)
T PF13941_consen 114 EEDLEEIREIRPDIILLAGGTDGGNKEVILHNAEMLAEANLRIPVI 159 (457)
T ss_pred HHHHHHHhccCCCEEEEeCCccCCchHHHHHHHHHHHhCCCCCcEE
Confidence 34567888889999999999654222211 123344455566754
No 248
>PF13380 CoA_binding_2: CoA binding domain; PDB: 3FF4_A 2D5A_A 2D59_A 2E6U_X 1IUL_A 1IUK_A 1Y81_A 2DUW_A.
Probab=35.87 E-value=94 Score=20.67 Aligned_cols=44 Identities=16% Similarity=0.334 Sum_probs=25.1
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEE-eehHhHH
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLF-GVCMGLQ 53 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~Pil-GIC~G~Q 53 (174)
.+++++.+++..++|+-+| .......+..++ .+++++ .=|.|+.
T Consensus 70 ~~v~~~~~~g~~~v~~~~g----~~~~~~~~~a~~--~gi~vigp~C~gv~ 114 (116)
T PF13380_consen 70 EIVDEAAALGVKAVWLQPG----AESEELIEAARE--AGIRVIGPNCLGVV 114 (116)
T ss_dssp HHHHHHHHHT-SEEEE-TT----S--HHHHHHHHH--TT-EEEESS-HHHH
T ss_pred HHHHHHHHcCCCEEEEEcc----hHHHHHHHHHHH--cCCEEEeCCcceEE
Confidence 4567777778899999888 222333333333 569999 5688875
No 249
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=35.80 E-value=31 Score=24.79 Aligned_cols=35 Identities=11% Similarity=-0.109 Sum_probs=25.8
Q ss_pred cCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeeh
Q 030626 12 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 49 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC 49 (174)
.++|.||+.|... +-....+..+++.. ++.++.||
T Consensus 99 g~~DlvlfvG~~~--y~~~~~ls~lk~f~-~~~~i~l~ 133 (162)
T TIGR00315 99 GNYDLVLFLGIIY--YYLSQMLSSLKHFS-HIVTIAID 133 (162)
T ss_pred CCcCEEEEeCCcc--hHHHHHHHHHHhhc-CcEEEEec
Confidence 4689999988755 33344566777666 89999999
No 250
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=35.08 E-value=45 Score=26.91 Aligned_cols=19 Identities=26% Similarity=0.541 Sum_probs=13.2
Q ss_pred eEEEeeCCCCceEEEecCCCC
Q 030626 127 IMAARHKKYKHLQGVQFHPES 147 (174)
Q Consensus 127 i~a~~~~~~~~~~g~QfHPE~ 147 (174)
..-++... | +++.||||-.
T Consensus 100 l~rirf~s-p-v~~~q~hp~k 118 (405)
T KOG1273|consen 100 LKRIRFDS-P-VWGAQWHPRK 118 (405)
T ss_pred eeEEEccC-c-cceeeecccc
Confidence 33444443 4 9999999975
No 251
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=35.02 E-value=83 Score=23.53 Aligned_cols=19 Identities=21% Similarity=0.459 Sum_probs=14.6
Q ss_pred hHHHHHHhcCCCEEEeCCC
Q 030626 4 NYLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG 22 (174)
+..+.+...++||||+.+.
T Consensus 46 ~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06292 46 DYVEDLLARGVRGVVFISS 64 (273)
T ss_pred HHHHHHHHcCCCEEEEeCC
Confidence 4566777788999999764
No 252
>PTZ00287 6-phosphofructokinase; Provisional
Probab=34.92 E-value=33 Score=33.02 Aligned_cols=54 Identities=11% Similarity=0.219 Sum_probs=34.9
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-------------cCCCCc--EEeehHhHHHHHHH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-------------LGPTVP--LFGVCMGLQCIGEA 58 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-------------~~~~~P--ilGIC~G~Qll~~~ 58 (174)
..+.+.+++.|++|+.||.++......+.+...+ +.+++| ..=.|+|+...+..
T Consensus 263 i~e~lkkl~Id~LViIGGddS~~~A~~Lae~~~~~gi~i~VIGIPKTIDNDL~~~gTD~S~GFDTA~n~ 331 (1419)
T PTZ00287 263 IENIVAKLKLNGLVIIGGDGSNSNAALISEYFAERQIPISIIGIPKTIDGDLKSEAIEISFGFDTATKT 331 (1419)
T ss_pred HHHHHHHcCCCEEEEECChhHHHHHHHHHHHHHhcCCCeeEEEEeeeecCCCCCCCCCcCCCHHHHHHH
Confidence 3456677899999999998876544443322221 235555 35578999877654
No 253
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=34.88 E-value=58 Score=21.45 Aligned_cols=18 Identities=6% Similarity=-0.047 Sum_probs=11.5
Q ss_pred HHHHHHhcCCCEEEeCCC
Q 030626 5 YLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG 22 (174)
..+.+.+.++|.|.|+..
T Consensus 42 l~~~~~~~~pdvV~iS~~ 59 (119)
T cd02067 42 IVEAAKEEDADAIGLSGL 59 (119)
T ss_pred HHHHHHHcCCCEEEEecc
Confidence 445556667777777655
No 254
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=34.71 E-value=1e+02 Score=23.14 Aligned_cols=19 Identities=11% Similarity=0.277 Sum_probs=13.8
Q ss_pred hHHHHHHhcCCCEEEeCCC
Q 030626 4 NYLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG 22 (174)
++.+.+...++||||+.+.
T Consensus 46 ~~i~~l~~~~vdgiIi~~~ 64 (273)
T cd06309 46 SAIRSFIAQGVDVIILAPV 64 (273)
T ss_pred HHHHHHHHcCCCEEEEcCC
Confidence 3455666678999999764
No 255
>COG1983 PspC Putative stress-responsive transcriptional regulator [Transcription / Signal transduction mechanisms]
Probab=34.37 E-value=22 Score=21.74 Aligned_cols=24 Identities=29% Similarity=0.467 Sum_probs=17.3
Q ss_pred HHHHcCCCCcEEeehHhHHHHHHHhCC
Q 030626 35 TVLELGPTVPLFGVCMGLQCIGEAFGG 61 (174)
Q Consensus 35 ~i~~~~~~~PilGIC~G~Qll~~~~gg 61 (174)
.+++...++-+.|+|.| |++++|-
T Consensus 4 kL~Rs~~nr~iaGVcgG---la~yf~i 27 (70)
T COG1983 4 KLYRSRKNRMIAGVCGG---LAEYFGI 27 (70)
T ss_pred chhcCccCCEeeeeehh---HHHHhCC
Confidence 45556677889999999 4666654
No 256
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=34.25 E-value=63 Score=23.70 Aligned_cols=32 Identities=9% Similarity=0.234 Sum_probs=19.5
Q ss_pred cCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeeh
Q 030626 12 KNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 49 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC 49 (174)
..||.||+..- ......+++. ..-++|+.|+|
T Consensus 126 ~~Pdlviv~~~----~~~~~ai~Ea--~~l~IP~I~i~ 157 (193)
T cd01425 126 RLPDLVIVLDP----RKEHQAIREA--SKLGIPVIAIV 157 (193)
T ss_pred cCCCEEEEeCC----ccchHHHHHH--HHcCCCEEEEe
Confidence 35899998753 2222223333 33469999998
No 257
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=34.20 E-value=1.1e+02 Score=22.71 Aligned_cols=20 Identities=15% Similarity=0.363 Sum_probs=14.4
Q ss_pred hHHHHHHhcCCCEEEeCCCC
Q 030626 4 NYLVSYCRKNPRGVLISPGP 23 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~ 23 (174)
+..+.+...++||||+.+..
T Consensus 46 ~~~~~l~~~~vdgiii~~~~ 65 (268)
T cd01575 46 ELLRTLLSRRPAGLILTGLE 65 (268)
T ss_pred HHHHHHHHcCCCEEEEeCCC
Confidence 34566666789999998643
No 258
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA). HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.
Probab=34.03 E-value=73 Score=25.25 Aligned_cols=47 Identities=19% Similarity=0.176 Sum_probs=29.5
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCc-----chhHHHHHH-cCCCCcEEeehH
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVPLFGVCM 50 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~-----~~~~~~i~~-~~~~~PilGIC~ 50 (174)
++.+.+.+...+||++.|+.|-..-- ..+.+...+ .+.++||+.=+.
T Consensus 33 ~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~ 85 (309)
T cd00952 33 RLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGAT 85 (309)
T ss_pred HHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEec
Confidence 34556666689999999988865422 123344433 667799775443
No 259
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=33.57 E-value=65 Score=24.92 Aligned_cols=11 Identities=18% Similarity=0.603 Sum_probs=8.9
Q ss_pred cCCCCcEEeeh
Q 030626 39 LGPTVPLFGVC 49 (174)
Q Consensus 39 ~~~~~PilGIC 49 (174)
..-++|++|+|
T Consensus 138 ~~lnIPvIal~ 148 (249)
T PTZ00254 138 SYVNIPVIALC 148 (249)
T ss_pred HHhCCCEEEEe
Confidence 34569999999
No 260
>COG4242 CphB Cyanophycinase and related exopeptidases [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=32.62 E-value=73 Score=24.79 Aligned_cols=45 Identities=11% Similarity=0.254 Sum_probs=34.7
Q ss_pred CCCEEEeCCCCCCCC----CcchhHHHHHH-cCCCCcEEeehHhHHHHHH
Q 030626 13 NPRGVLISPGPGAPQ----DSGISLQTVLE-LGPTVPLFGVCMGLQCIGE 57 (174)
Q Consensus 13 ~~dgiii~GG~~~~~----~~~~~~~~i~~-~~~~~PilGIC~G~Qll~~ 57 (174)
+++||+++||.-... ...++++.|++ ..+++-+-|...|.-+|..
T Consensus 106 ~a~gIfftGGDQ~ri~~~lkdTpl~~~ir~r~r~G~avgGTSAGAavM~~ 155 (293)
T COG4242 106 NATGIFFTGGDQLRIIGSLKDTPLMAAIRQRVRRGIAVGGTSAGAAVMSD 155 (293)
T ss_pred hCceEEEecCcceeeeeeccCCHHHHHHHHHHhcCceecccccchhhcCC
Confidence 789999999966542 34456677775 6777999999999988864
No 261
>KOG3974 consensus Predicted sugar kinase [Carbohydrate transport and metabolism]
Probab=32.51 E-value=69 Score=25.14 Aligned_cols=52 Identities=25% Similarity=0.328 Sum_probs=29.7
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH--cCCCCcEEeehHhHHHHH
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE--LGPTVPLFGVCMGLQCIG 56 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~--~~~~~PilGIC~G~Qll~ 56 (174)
+-.+.+.. +.+++||.+|-|--...-+.+..|.+ .++++|+.==-=|..++.
T Consensus 93 ~~i~k~L~-RlhavVIGPGLGRdp~~~k~i~~iley~~~~dvP~VIDaDGL~Lv~ 146 (306)
T KOG3974|consen 93 DIIEKLLQ-RLHAVVIGPGLGRDPAILKEIAKILEYLRGKDVPLVIDADGLWLVE 146 (306)
T ss_pred hHHHHHHh-heeEEEECCCCCCCHHHHHHHHHHHHHHhcCCCcEEEcCCceEehh
Confidence 34445433 46899998888762222233444444 567899875455554444
No 262
>TIGR03725 bact_YeaZ universal bacterial protein YeaZ. This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.
Probab=32.11 E-value=30 Score=25.54 Aligned_cols=45 Identities=27% Similarity=0.458 Sum_probs=30.1
Q ss_pred CCCEEEeCCCCCCCCCcchhH--HHHHHcCCCCcEEeehHhHHHHHHH
Q 030626 13 NPRGVLISPGPGAPQDSGISL--QTVLELGPTVPLFGVCMGLQCIGEA 58 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~--~~i~~~~~~~PilGIC~G~Qll~~~ 58 (174)
+.|.|.++=||||+.-..--+ ..-.....++|++|+.. +++|+..
T Consensus 54 ~i~~iav~~GPGSfTGlRig~~~akgla~~~~~p~~~vss-L~~lA~~ 100 (202)
T TIGR03725 54 DLDAIAVGVGPGSFTGLRIGLATAKGLALALGIPLVGVSS-LEALAAQ 100 (202)
T ss_pred HCCEEEEecCCChHHhHHHHHHHHHHHHHHhCCCEEecCH-HHHHHhh
Confidence 578999999999976432222 22223446799999985 6666643
No 263
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=31.70 E-value=1.2e+02 Score=23.49 Aligned_cols=19 Identities=11% Similarity=0.450 Sum_probs=15.9
Q ss_pred hHHHHHHhcCCCEEEeCCC
Q 030626 4 NYLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG 22 (174)
++.+.+...++||||+.+.
T Consensus 47 ~~i~~l~~~~vDGiI~~s~ 65 (279)
T PF00532_consen 47 EYIELLLQRRVDGIILASS 65 (279)
T ss_dssp HHHHHHHHTTSSEEEEESS
T ss_pred HHHHHHHhcCCCEEEEecc
Confidence 5778888889999999944
No 264
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=31.44 E-value=90 Score=23.97 Aligned_cols=18 Identities=17% Similarity=0.169 Sum_probs=13.4
Q ss_pred hHHHHHHhcCCCEEEeCC
Q 030626 4 NYLVSYCRKNPRGVLISP 21 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~G 21 (174)
++.+.+...++||||+.+
T Consensus 47 ~~i~~l~~~~vdgiIi~~ 64 (302)
T TIGR02637 47 EVVNSLIAQKVDAIAISA 64 (302)
T ss_pred HHHHHHHHcCCCEEEEeC
Confidence 355666667899999975
No 265
>COG1486 CelF Alpha-galactosidases/6-phospho-beta-glucosidases, family 4 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=31.28 E-value=1.1e+02 Score=25.79 Aligned_cols=55 Identities=18% Similarity=0.347 Sum_probs=31.4
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHH----HHHHhCCe
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQC----IGEAFGGK 62 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Ql----l~~~~gg~ 62 (174)
++.+++.++-||+.+|= ..+.....-.++++....+.++|+|-|-|- ||+.+|..
T Consensus 128 di~~~m~~~~P~Aw~lN----ytNP~~~vTeAv~r~~~~~K~VGlCh~~~g~~~~lAe~L~~~ 186 (442)
T COG1486 128 DIAKDMEKVCPNAWMLN----YTNPAAIVTEAVRRLYPKIKIVGLCHGPIGIAMELAEVLGLE 186 (442)
T ss_pred HHHHHHHHhCCCceEEe----ccChHHHHHHHHHHhCCCCcEEeeCCchHHHHHHHHHHhCCC
Confidence 34556666666666651 111222223555554446799999999554 45667764
No 266
>PF01606 Arteri_env: Arterivirus envelope protein; InterPro: IPR002556 This family consists of viral envelope proteins from the Arteriviridae; this includes Porcine reproductive and respiratory syndrome virus (PRRSV) envelope protein GP3 and Lactate dehydrogenase-elevating virus (LDV) structural glycoprotein. Arteriviruses consists of positive ssRNA and do not have a DNA stage.
Probab=31.27 E-value=7.1 Score=28.26 Aligned_cols=11 Identities=45% Similarity=0.661 Sum_probs=9.4
Q ss_pred ceEEEecCCCC
Q 030626 137 HLQGVQFHPES 147 (174)
Q Consensus 137 ~~~g~QfHPE~ 147 (174)
+.|+.|||||.
T Consensus 118 fsyaaqfhPEi 128 (214)
T PF01606_consen 118 FSYAAQFHPEI 128 (214)
T ss_pred HHHHHhhChhh
Confidence 46889999996
No 267
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=31.16 E-value=68 Score=26.43 Aligned_cols=29 Identities=14% Similarity=0.195 Sum_probs=19.6
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCcchhHHHH
Q 030626 7 VSYCRKNPRGVLISPGPGAPQDSGISLQTV 36 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~~~~~~~~i 36 (174)
+...+.++|.||-.|| ||+-|.-+.+..+
T Consensus 80 ~~~~~~~~D~iIalGG-GS~~D~AK~i~~~ 108 (377)
T COG1454 80 EVAREFGPDTIIALGG-GSVIDAAKAIALL 108 (377)
T ss_pred HHHHhcCCCEEEEeCC-ccHHHHHHHHHHH
Confidence 4556678999998887 6666665544443
No 268
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=30.92 E-value=1.1e+02 Score=23.59 Aligned_cols=42 Identities=12% Similarity=0.069 Sum_probs=23.0
Q ss_pred HHHHhcCCCEEEeCCCCCCCC---CcchhHHHHHHcCCCCcEEee
Q 030626 7 VSYCRKNPRGVLISPGPGAPQ---DSGISLQTVLELGPTVPLFGV 48 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~---~~~~~~~~i~~~~~~~PilGI 48 (174)
+.+...++|.|+++|--.+.. +...+.+.+.++....|++.+
T Consensus 74 ~~i~~~~pDlVli~GD~~d~~~~~~~~~~~~~L~~L~~~~pv~~V 118 (271)
T PRK11340 74 ALGIEQKPDLILLGGDYVLFDMPLNFSAFSDVLSPLAECAPTFAC 118 (271)
T ss_pred HHHHhcCCCEEEEccCcCCCCccccHHHHHHHHHHHhhcCCEEEe
Confidence 445556899999988754421 112233444444444675543
No 269
>cd08180 PDD 1,3-propanediol dehydrogenase (PPD) catalyzes the reduction of 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol in glycerol metabolism. 1,3-propanediol dehydrogenase (PPD) plays a role in glycerol metabolism of some bacteria in anaerobic conditions. In this degradation pathway, glycerol is converted in a two-step process to 1,3-propanediol (1,3-PD) which is then excreted into the extracellular medium. The first reaction involves the transformation of glycerol into 3-hydroxypropionaldehyde (3-HPA) by a coenzyme B-12-dependent dehydratase. The second reaction involves the dismutation of the 3-hydroxypropionaldehyde (3-HPA) to 1,3-propanediol by the NADH-linked 1,3-propanediol dehydrogenase (PPD). The enzyme require iron ion for its function. Because many genes in this pathway are present in the pdu (propanediol utilisation) operon, they are also named pdu genes. PPD is a member of the iron-containing alcohol dehydrogenase superfamily. The PPD structure has a dehydroquinat
Probab=30.83 E-value=67 Score=25.61 Aligned_cols=20 Identities=25% Similarity=0.311 Sum_probs=8.7
Q ss_pred hcCCCEEEeCCCCCCCCCcch
Q 030626 11 RKNPRGVLISPGPGAPQDSGI 31 (174)
Q Consensus 11 ~~~~dgiii~GG~~~~~~~~~ 31 (174)
+.++|.||-.|| |++-|..+
T Consensus 76 ~~~~d~IiaiGG-Gs~~D~aK 95 (332)
T cd08180 76 DFKPDIVIALGG-GSAIDAAK 95 (332)
T ss_pred hcCCCEEEEECC-chHHHHHH
Confidence 334555554433 33333333
No 270
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=30.67 E-value=53 Score=26.42 Aligned_cols=25 Identities=36% Similarity=0.280 Sum_probs=20.7
Q ss_pred chHHHHHHhcCCCEEEeCCCCCCCC
Q 030626 3 VNYLVSYCRKNPRGVLISPGPGAPQ 27 (174)
Q Consensus 3 ~~~~~~~~~~~~dgiii~GG~~~~~ 27 (174)
....+++..+++|-|+|-|||-.+.
T Consensus 65 es~~~eI~~lnpd~VLIIGGp~AVs 89 (337)
T COG2247 65 ESVLDEIIELNPDLVLIIGGPIAVS 89 (337)
T ss_pred HHHHHHHHhhCCceEEEECCCCcCC
Confidence 3456788899999999999998763
No 271
>PLN02417 dihydrodipicolinate synthase
Probab=30.56 E-value=1.5e+02 Score=23.04 Aligned_cols=48 Identities=10% Similarity=0.189 Sum_probs=30.5
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCc--c---hhHHHHHH-cCCCCcEEeehHhH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDS--G---ISLQTVLE-LGPTVPLFGVCMGL 52 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~--~---~~~~~i~~-~~~~~PilGIC~G~ 52 (174)
..+.+.+...+||++.|..|-.... . .+++.+.+ ...++|++.-+...
T Consensus 27 ~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~ 80 (280)
T PLN02417 27 LVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSN 80 (280)
T ss_pred HHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCc
Confidence 4455556689999999987755422 1 23343333 56779998777653
No 272
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases. The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.
Probab=30.22 E-value=1.1e+02 Score=23.86 Aligned_cols=45 Identities=11% Similarity=0.115 Sum_probs=27.8
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcc-----hhHHHHHH-cCCCCcEEe-eh
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFG-VC 49 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~~~~PilG-IC 49 (174)
..+.+.+...|||++.|+.|-...-. .+++...+ ...++||+. +|
T Consensus 26 l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~ 77 (289)
T cd00951 26 HVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAG 77 (289)
T ss_pred HHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecC
Confidence 45555666799999999877554221 23343333 556788774 54
No 273
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=30.02 E-value=70 Score=23.72 Aligned_cols=46 Identities=11% Similarity=0.017 Sum_probs=27.8
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCC---cchhHHHH------HHcCCCCcEEeeh
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQD---SGISLQTV------LELGPTVPLFGVC 49 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~---~~~~~~~i------~~~~~~~PilGIC 49 (174)
.|...+..+++|.||++|---+... ..++.+.+ .....++|+.-||
T Consensus 33 ~~~~a~~~l~PD~Vi~lGDL~D~G~~~~~~e~~e~l~Rf~~If~~~~~~~~~~Vp 87 (195)
T cd08166 33 TYHLALNFVQPDIVIFLGDLMDEGSIANDDEYYSYVQRFINIFEVPNGTKIIYLP 87 (195)
T ss_pred HHHHHHhccCCCEEEEeccccCCCCCCCHHHHHHHHHHHHHHhcCCCCCcEEEEC
Confidence 4556666779999999986444332 22233322 2235678888777
No 274
>PF08459 UvrC_HhH_N: UvrC Helix-hairpin-helix N-terminal; InterPro: IPR001162 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. The UvrC proteins contain 4 conserved regions: a central region which interacts with UvrB (Uvr domain), a Helix hairpin Helix (HhH) domain important for 5 prime incision of damage DNA and the homology regions 1 and 2 of unknown function. UvrC homology region 2 is specific for UvrC proteins, whereas UvrC homology region 1 is also shared by few other nucleases. Proteins that contain the UvrC homology region 1, IPR000305 from INTERPRO, are listed below: Prokaryotic UvrC proteins. Bacteriophage T4 END2 protein. Small subunit of ribonucleotide reductase enzyme. T4 TEV1 protein. Endonuclease specific to the thymidylate synthase (td) gene splice junction. Found in putative intron-homing endonucleases encoded by group I introns of fungi and phage. Mycobacterium hypothetical protein Y002. Exonuclease by similarity. Bacillus subtilis hypothetical protein YURQ. ; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3C65_A 2NRZ_A 2NRR_A 2NRX_A 2NRV_A 2NRT_A 2NRW_A.
Probab=29.45 E-value=27 Score=24.88 Aligned_cols=34 Identities=29% Similarity=0.541 Sum_probs=18.1
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeeh
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 49 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC 49 (174)
-||.|+|=||.+... ...+.+.+++-.+|++|+-
T Consensus 79 lPDLilIDGG~gQl~---aa~~~l~~lgl~i~vigla 112 (155)
T PF08459_consen 79 LPDLILIDGGKGQLN---AAKEVLKELGLNIPVIGLA 112 (155)
T ss_dssp --SEEEESSSHHHHH---HHHHHHHCTT----EEEEE
T ss_pred CCCEEEEcCCHHHHH---HHHHHHHHcCCCeEEEEEE
Confidence 389999999976422 2234444555558988874
No 275
>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i
Probab=28.84 E-value=1.6e+02 Score=22.03 Aligned_cols=21 Identities=19% Similarity=0.352 Sum_probs=15.1
Q ss_pred hHHHHHHhcCCCEEEeCCCCC
Q 030626 4 NYLVSYCRKNPRGVLISPGPG 24 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~ 24 (174)
...+.+...++||+|+.++..
T Consensus 46 ~~i~~l~~~~vdgii~~~~~~ 66 (273)
T cd01541 46 KCLENMLSQGIDGLIIEPTKS 66 (273)
T ss_pred HHHHHHHHcCCCEEEEecccc
Confidence 345567777899999987543
No 276
>TIGR01819 F420_cofD LPPG:FO 2-phospho-L-lactate transferase. This model represents LPPG:Fo 2-phospho-L-lactate transferase, which catalyses the fourth step in the biosynthesis of coenzyme F420, a flavin derivative found in methanogens, the Mycobacteria, and several other lineages. This enzyme is characterized so far in Methanococcus jannaschii but appears restricted to F420-containing species and is predicted to carry out the same function in these other species. The clade represented by this model is one of two major divisions of proteins in pfam model pfam01933.
Probab=28.57 E-value=79 Score=25.16 Aligned_cols=39 Identities=28% Similarity=0.355 Sum_probs=22.7
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcc---hhHHHHHH-cCCCCcEEeeh
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSG---ISLQTVLE-LGPTVPLFGVC 49 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~---~~~~~i~~-~~~~~PilGIC 49 (174)
.+.|. +.|.|||. |+|++-+- -...-|++ +.+ .|+.+||
T Consensus 177 l~AI~--~AD~IIlG--Pgsp~TSI~P~LlVpgIreAL~~-a~vV~Vs 219 (297)
T TIGR01819 177 LEAIR--KEDNILIG--PSNPITSIGPILSLPGIREALRD-KKVVAVS 219 (297)
T ss_pred HHHHH--hCCEEEEC--CCccHHHhhhhcCchhHHHHHHc-CCEEEEc
Confidence 34444 46899985 56665332 12244443 333 8999998
No 277
>PF04024 PspC: PspC domain; InterPro: IPR007168 This domain is found in Phage shock protein C (PspC) that is thought to be a transcriptional regulator. The presumed domain is 60 amino acid residues in length.
Probab=28.44 E-value=20 Score=21.22 Aligned_cols=22 Identities=36% Similarity=0.549 Sum_probs=15.3
Q ss_pred HcCCCCcEEeehHhHHHHHHHhCCe
Q 030626 38 ELGPTVPLFGVCMGLQCIGEAFGGK 62 (174)
Q Consensus 38 ~~~~~~PilGIC~G~Qll~~~~gg~ 62 (174)
+..+++-+.|+|.|. ++.+|-.
T Consensus 6 R~~~~~~i~GVcaGl---A~~~gid 27 (61)
T PF04024_consen 6 RSRDDRVIAGVCAGL---AEYFGID 27 (61)
T ss_pred ECCCCCEEeeeHHHH---HHHHCcC
Confidence 345678899999984 5555543
No 278
>cd07385 MPP_YkuE_C Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain. YkuE is an uncharacterized Bacillus subtilis protein with a C-terminal metallophosphatase domain and an N-terminal twin-arginine (RR) motif. An RR-signal peptide derived from the Bacillus subtilis YkuE protein can direct Tat-dependent secretion of agarase in Streptomyces lividans. This is an indication that YkuE is transported by the Bacillus subtilis Tat (Twin-arginine translocation) pathway machinery. YkuE belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-dia
Probab=28.26 E-value=1.7e+02 Score=21.27 Aligned_cols=44 Identities=11% Similarity=0.107 Sum_probs=25.2
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcc--hhHHHHHHcCCCCcEEee
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSG--ISLQTVLELGPTVPLFGV 48 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~--~~~~~i~~~~~~~PilGI 48 (174)
..+.+...++|.|+++|--.+..... ...+.+.++....|++.+
T Consensus 24 ~~~~~~~~~~d~vl~~GD~~~~~~~~~~~~~~~l~~l~~~~~v~~v 69 (223)
T cd07385 24 LVEKINALKPDLVVLTGDLVDGSVDVLELLLELLKKLKAPLGVYAV 69 (223)
T ss_pred HHHHHhccCCCEEEEcCcccCCcchhhHHHHHHHhccCCCCCEEEE
Confidence 34455556899999876544332222 233344445566787766
No 279
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=28.25 E-value=1.5e+02 Score=24.76 Aligned_cols=54 Identities=15% Similarity=0.212 Sum_probs=32.4
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHHHH----HHHhCC
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQCI----GEAFGG 61 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Qll----~~~~gg 61 (174)
+..+++.++.+|+++|--. +|- +..-..+++...+..++|+|-+.+-+ +..+|-
T Consensus 125 ~i~~~i~~~~P~a~lin~T--NP~--di~t~a~~~~~p~~rviG~c~~~~r~~~~ia~~lgv 182 (425)
T cd05197 125 DIARKXEKLSPDAWYLNFT--NPA--GEVTEAVRRYVPPEKAVGLCNVPIGVMEIVAKLLGE 182 (425)
T ss_pred HHHHHHHHhCCCcEEEecC--ChH--HHHHHHHHHhCCCCcEEEECCCHHHHHHHHHHHhCC
Confidence 4566777778888888522 221 22223334444567899999886554 445554
No 280
>cd08170 GlyDH Glycerol dehydrogenases (GlyDH) catalyzes oxidation of glycerol to dihydroxyacetone in glycerol dissmilation. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway . In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=28.22 E-value=82 Score=25.30 Aligned_cols=35 Identities=17% Similarity=0.128 Sum_probs=17.9
Q ss_pred HhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeeh
Q 030626 10 CRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 49 (174)
Q Consensus 10 ~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC 49 (174)
...++|.||-.|| |++-|..+.+... .++|++.|-
T Consensus 74 ~~~~~D~IIavGG-GS~iD~aK~ia~~----~~~P~iaIP 108 (351)
T cd08170 74 RDNGADVVIGIGG-GKTLDTAKAVADY----LGAPVVIVP 108 (351)
T ss_pred hhcCCCEEEEecC-chhhHHHHHHHHH----cCCCEEEeC
Confidence 3446677766665 5555554443332 235555543
No 281
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=28.18 E-value=2e+02 Score=22.14 Aligned_cols=49 Identities=16% Similarity=0.066 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHh--------HHHHHHHhC
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG--------LQCIGEAFG 60 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G--------~Qll~~~~g 60 (174)
..|.|..++||.||..++.. ....+.+.+. ++|+.-++.+ +..++.++|
T Consensus 83 n~E~I~al~PDlIi~~~~~~-----~~~~~~l~~~--gi~v~~~~~~~~~~~~~~i~~lg~~~G 139 (289)
T TIGR03659 83 DMEKIKSLKPTVVLSVTTLE-----EDLGPKFKQL--GVEATFLNLTSVDGMKKSITELGEKYG 139 (289)
T ss_pred CHHHHhccCCcEEEEcCccc-----HHHHHHHHHc--CCcEEEEcCCCHHHHHHHHHHHHHHhC
Confidence 46888999999999764421 2233445445 4888877653 445566666
No 282
>cd00764 Eukaryotic_PFK Phosphofructokinase, a key regulatory enzyme in glycolysis, catalyzes the phosphorylation of fructose-6-phosphate to fructose-1,6-biphosphate. The members belong to a subfamily of the PFKA family (cd00363) and include eukaryotic ATP-dependent phosphofructokinases. These have evolved from the bacterial PFKs by gene duplication and fusion events and exhibit complex allosteric behavior.
Probab=28.17 E-value=48 Score=29.99 Aligned_cols=25 Identities=8% Similarity=0.135 Sum_probs=19.6
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCc
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDS 29 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~ 29 (174)
-.+.+.+++.|+||+.||.|+....
T Consensus 89 a~~~L~~~~Id~LvvIGGdgSl~gA 113 (762)
T cd00764 89 AAYNLIQRGITNLCVIGGDGSLTGA 113 (762)
T ss_pred HHHHHHHcCCCEEEEeCCchHHHHH
Confidence 3556777899999999999986433
No 283
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=28.02 E-value=2e+02 Score=20.31 Aligned_cols=53 Identities=19% Similarity=0.221 Sum_probs=32.3
Q ss_pred CEEEeCCCCCCCCCc--chh-HHHHHH-cCCCCcEEeehHh--------HHHHHHHhCCeeccCC
Q 030626 15 RGVLISPGPGAPQDS--GIS-LQTVLE-LGPTVPLFGVCMG--------LQCIGEAFGGKIVRSP 67 (174)
Q Consensus 15 dgiii~GG~~~~~~~--~~~-~~~i~~-~~~~~PilGIC~G--------~Qll~~~~gg~v~~~~ 67 (174)
-.|+|+-|..+.... ... .+...+ ...+++++.|+.| ++-|+.+.||+.....
T Consensus 101 ~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~~~~~~~~~~~l~~iA~~tgG~~~~~~ 165 (178)
T cd01451 101 LIVVITDGRANVGPDPTADRALAAARKLRARGISALVIDTEGRPVRRGLAKDLARALGGQYVRLP 165 (178)
T ss_pred EEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEeCCCCccCccHHHHHHHHcCCeEEEcC
Confidence 366777676553222 112 222222 3457999999987 4677888888877665
No 284
>COG0710 AroD 3-dehydroquinate dehydratase [Amino acid transport and metabolism]
Probab=27.83 E-value=90 Score=23.84 Aligned_cols=42 Identities=21% Similarity=0.207 Sum_probs=22.1
Q ss_pred cCCCEEEeCCCCCCCCCcchhHHHHHHc-CCCCcEEeehHhHH
Q 030626 12 KNPRGVLISPGPGAPQDSGISLQTVLEL-GPTVPLFGVCMGLQ 53 (174)
Q Consensus 12 ~~~dgiii~GG~~~~~~~~~~~~~i~~~-~~~~PilGIC~G~Q 53 (174)
.+.|-+=|..-|.+..|.-.+++..+.. ....|+.+||+|--
T Consensus 145 ~~aDivKiAvm~~~~~DvL~ll~~~~~~~~~~~p~i~i~MG~~ 187 (231)
T COG0710 145 LGADIVKIAVMPQSKEDVLDLLEATREFKEAEKPVITISMGKT 187 (231)
T ss_pred hCCCeEEEEecCCCHHHHHHHHHHHHhccccCCCEEEEecCCC
Confidence 3444444443344333333333333321 16899999999854
No 285
>PLN00158 histone H2B; Provisional
Probab=27.74 E-value=74 Score=21.53 Aligned_cols=28 Identities=32% Similarity=0.502 Sum_probs=20.8
Q ss_pred EEecCCCCcCCCchHHHHHHHHHHHHHH
Q 030626 140 GVQFHPESIITTEGKTIVRNFIKMIVRK 167 (174)
Q Consensus 140 g~QfHPE~~~~~~~~~l~~~f~~~~~~~ 167 (174)
-=|.||+...+..+..++..|+..+..+
T Consensus 37 LKQVhPd~gIS~kaM~ImnSfvnDifer 64 (116)
T PLN00158 37 LKQVHPDTGISSKAMSIMNSFINDIFEK 64 (116)
T ss_pred HHHhCCCCCccHHHHHHHHHHHHHHHHH
Confidence 4588999877777777888888775543
No 286
>smart00427 H2B Histone H2B.
Probab=27.46 E-value=71 Score=20.53 Aligned_cols=26 Identities=27% Similarity=0.600 Sum_probs=19.6
Q ss_pred ecCCCCcCCCchHHHHHHHHHHHHHH
Q 030626 142 QFHPESIITTEGKTIVRNFIKMIVRK 167 (174)
Q Consensus 142 QfHPE~~~~~~~~~l~~~f~~~~~~~ 167 (174)
|-||+...+..+..++..|+..+..+
T Consensus 13 qVhpd~giS~kam~imnSfvnDifer 38 (89)
T smart00427 13 QVHPDTGISSKAMSIMNSFVNDIFER 38 (89)
T ss_pred HhCCCccccHHHHHHHHHHHHHHHHH
Confidence 78999877777778888888775543
No 287
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.
Probab=27.30 E-value=1.3e+02 Score=23.69 Aligned_cols=45 Identities=9% Similarity=0.257 Sum_probs=28.3
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcc-----hhHHHHH-HcCCCCcEE-eeh
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSG-----ISLQTVL-ELGPTVPLF-GVC 49 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~-----~~~~~i~-~~~~~~Pil-GIC 49 (174)
..+.+.+...+||++.|+.|-...-. .+++... +...++||+ |++
T Consensus 26 lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~ 77 (294)
T TIGR02313 26 LIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTG 77 (294)
T ss_pred HHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECC
Confidence 45555666799999999877654222 2334433 356779987 443
No 288
>cd01148 TroA_a Metal binding protein TroA_a. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=27.16 E-value=1.3e+02 Score=22.96 Aligned_cols=41 Identities=12% Similarity=0.000 Sum_probs=25.6
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 48 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI 48 (174)
.|.|..+++|.||...+.+........++.+.+. ++|++-+
T Consensus 72 ~E~I~~l~PDlIi~~~~~~~~~~~~~~~~~L~~~--gipv~~~ 112 (284)
T cd01148 72 KETVLAARPDLVFGGWSYGFDKGGLGTPDSLAEL--GIKTYIL 112 (284)
T ss_pred HHHHhcCCCCEEEEecccccCCCCCCCHHHHHHC--CCeEEEC
Confidence 6889999999999865443322212233444443 4888877
No 289
>PRK13606 LPPG:FO 2-phospho-L-lactate transferase; Provisional
Probab=26.59 E-value=1.1e+02 Score=24.36 Aligned_cols=39 Identities=26% Similarity=0.424 Sum_probs=23.2
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcc---hhHHHHHH-cCCCCcEEeeh
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSG---ISLQTVLE-LGPTVPLFGVC 49 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~---~~~~~i~~-~~~~~PilGIC 49 (174)
.+.|. +.|.|||. |+|++-+- -.+..+++ + .+.|+.+||
T Consensus 180 l~AI~--~AD~IiiG--Pgnp~TSI~P~L~v~gi~eAL-~~a~vV~Vs 222 (303)
T PRK13606 180 LEAIE--EADAVIIG--PSNPVTSIGPILAVPGIREAL-TEAPVVAVS 222 (303)
T ss_pred HHHHH--hCCEEEEC--CCccHHhhchhccchhHHHHH-hCCCEEEEc
Confidence 34443 46899985 55655331 12344443 4 678999988
No 290
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=26.46 E-value=97 Score=23.18 Aligned_cols=11 Identities=18% Similarity=0.773 Sum_probs=9.1
Q ss_pred cCCCCcEEeeh
Q 030626 39 LGPTVPLFGVC 49 (174)
Q Consensus 39 ~~~~~PilGIC 49 (174)
..-++|+.|||
T Consensus 134 ~kl~IP~Iaiv 144 (204)
T PRK04020 134 IEVGIPVVALC 144 (204)
T ss_pred HHhCCCEEEEE
Confidence 44569999999
No 291
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=26.17 E-value=1.3e+02 Score=22.41 Aligned_cols=18 Identities=11% Similarity=0.305 Sum_probs=12.9
Q ss_pred HHHHHHhcCCCEEEeCCC
Q 030626 5 YLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG 22 (174)
..+.+...++||||+.+.
T Consensus 52 ~~~~~~~~~vdgiIi~~~ 69 (272)
T cd06300 52 DIRNLIAQGVDAIIINPA 69 (272)
T ss_pred HHHHHHHcCCCEEEEeCC
Confidence 445555668999999764
No 292
>PTZ00463 histone H2B; Provisional
Probab=25.58 E-value=83 Score=21.29 Aligned_cols=27 Identities=26% Similarity=0.438 Sum_probs=20.5
Q ss_pred EecCCCCcCCCchHHHHHHHHHHHHHH
Q 030626 141 VQFHPESIITTEGKTIVRNFIKMIVRK 167 (174)
Q Consensus 141 ~QfHPE~~~~~~~~~l~~~f~~~~~~~ 167 (174)
=|.||+...+..+..++..|+..+..+
T Consensus 39 KqVhPd~gIS~kaM~ImnSfvnDifEr 65 (117)
T PTZ00463 39 KQVHPDTGISRKSMNIMNSFLVDTFEK 65 (117)
T ss_pred HhhCCCCCccHHHHHHHHHHHHHHHHH
Confidence 489999877777778888888775543
No 293
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.47 E-value=1.6e+02 Score=22.42 Aligned_cols=18 Identities=11% Similarity=0.207 Sum_probs=12.9
Q ss_pred hHHHHHHhcCCCEEEeCC
Q 030626 4 NYLVSYCRKNPRGVLISP 21 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~G 21 (174)
++.+.+...++||||+.+
T Consensus 47 ~~l~~~~~~~~dgiii~~ 64 (294)
T cd06316 47 ADIETTISQKPDIIISIP 64 (294)
T ss_pred HHHHHHHHhCCCEEEEcC
Confidence 445555666899999974
No 294
>PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) []. No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process
Probab=25.36 E-value=1.1e+02 Score=20.82 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=16.9
Q ss_pred CchHHHHHHhcCCCEEEeCC-CCCCCC
Q 030626 2 SVNYLVSYCRKNPRGVLISP-GPGAPQ 27 (174)
Q Consensus 2 ~~~~~~~~~~~~~dgiii~G-G~~~~~ 27 (174)
+..+.-+-.....|||++.| .+++.+
T Consensus 41 ~~~~il~Af~~GADGV~V~gC~~g~Ch 67 (124)
T PF02662_consen 41 DPEFILRAFEKGADGVLVAGCHPGDCH 67 (124)
T ss_pred CHHHHHHHHHcCCCEEEEeCCCCCCCC
Confidence 34445455556799999988 446654
No 295
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=25.33 E-value=1.5e+02 Score=22.11 Aligned_cols=19 Identities=26% Similarity=0.322 Sum_probs=13.9
Q ss_pred hHHHHHHhcCCCEEEeCCC
Q 030626 4 NYLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG 22 (174)
++.+.+...++||+|+.+.
T Consensus 46 ~~i~~l~~~~vDgiIi~~~ 64 (271)
T cd06314 46 RMLEDLIAEGVDGIAISPI 64 (271)
T ss_pred HHHHHHHhcCCCEEEEecC
Confidence 4455666678999999853
No 296
>TIGR02638 lactal_redase lactaldehyde reductase. This clade of genes encoding iron-containing alcohol dehydrogenase (pfam00465) proteins is generally found in apparent operons for the catabolism of rhamnose or fucose. Catabolism of both of these monosaccharides results in lactaldehyde which is reduced by this enzyme to 1,2 propanediol. This protein is alternatively known by the name 1,2 propanediol oxidoreductase. This enzyme is active under anaerobic conditions in E. coli while being inactivated by reactive oxygen species under aerobic conditions. Under aerobic conditions the lactaldehyde product of rhamnose and fucose catabolism is believed to be oxidized to lactate by a separate enzyme, lactaldehyde dehydrogenase.
Probab=25.15 E-value=93 Score=25.38 Aligned_cols=10 Identities=20% Similarity=0.212 Sum_probs=4.6
Q ss_pred EEeehHhHHH
Q 030626 45 LFGVCMGLQC 54 (174)
Q Consensus 45 ilGIC~G~Ql 54 (174)
|+||..|.-+
T Consensus 90 IiaiGGGSvi 99 (379)
T TIGR02638 90 LIAIGGGSPI 99 (379)
T ss_pred EEEeCChHHH
Confidence 4455444443
No 297
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=24.76 E-value=98 Score=25.27 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=12.5
Q ss_pred HHhcCCCEEEeCCCCCCCCCcchh
Q 030626 9 YCRKNPRGVLISPGPGAPQDSGIS 32 (174)
Q Consensus 9 ~~~~~~dgiii~GG~~~~~~~~~~ 32 (174)
....++|.||=.|| |++-|..+.
T Consensus 82 ~~~~~~D~IIaiGG-GS~iD~aK~ 104 (382)
T cd08187 82 CKEEKVDFILAVGG-GSVIDSAKA 104 (382)
T ss_pred HHHcCCCEEEEeCC-hHHHHHHHH
Confidence 34456777775555 444444443
No 298
>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=24.64 E-value=1.3e+02 Score=22.20 Aligned_cols=38 Identities=26% Similarity=0.458 Sum_probs=21.6
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeeh
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 49 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC 49 (174)
..+.+...++||||+.+.... .... .....++|++.++
T Consensus 47 ~~~~~~~~~vdgiii~~~~~~----~~~~---~~~~~~ipvv~~~ 84 (267)
T cd06284 47 YLDLLRRKQADGIILLDGSLP----PTAL---TALAKLPPIVQAC 84 (267)
T ss_pred HHHHHHHcCCCEEEEecCCCC----HHHH---HHHhcCCCEEEEe
Confidence 345566668999999654211 1111 2234478888765
No 299
>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]
Probab=24.61 E-value=1.6e+02 Score=22.69 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=25.5
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCcch--hHHHHHHcCCCCcEEeeh
Q 030626 7 VSYCRKNPRGVLISPGPGAPQDSGI--SLQTVLELGPTVPLFGVC 49 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~~~~--~~~~i~~~~~~~PilGIC 49 (174)
.++....+.|++||||..+..+..- +...+.++....-++=+|
T Consensus 49 ~el~kkGy~g~llSGGm~srg~VPl~kf~d~lK~lke~~~l~ina 93 (275)
T COG1856 49 MELEKKGYEGCLLSGGMDSRGKVPLWKFKDELKALKERTGLLINA 93 (275)
T ss_pred HHHHhcCceeEEEeCCcCCCCCccHHHHHHHHHHHHHhhCeEEEE
Confidence 3555668999999999887765543 234444443333333333
No 300
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=24.59 E-value=1.4e+02 Score=23.60 Aligned_cols=46 Identities=22% Similarity=0.320 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCc-----chhHHHHHH-cCCCCcEE-eehH
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVPLF-GVCM 50 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~-----~~~~~~i~~-~~~~~Pil-GIC~ 50 (174)
..+.+.+...|||++.|+-|-..-- ...++...+ .+.++|++ |++-
T Consensus 30 lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~ 82 (299)
T COG0329 30 LVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGS 82 (299)
T ss_pred HHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCC
Confidence 3455566679999999988854322 223444444 56668755 4543
No 301
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.
Probab=24.55 E-value=2.3e+02 Score=22.13 Aligned_cols=45 Identities=9% Similarity=0.070 Sum_probs=27.9
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcc-----hhHHHHHH-cCCCCcEEeeh
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVC 49 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~~~~PilGIC 49 (174)
..+.+.+..+|||++.|+.|-...-. .+++...+ .+.++||+.-.
T Consensus 31 li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv 81 (296)
T TIGR03249 31 NIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGV 81 (296)
T ss_pred HHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 44556666899999999877554221 23343433 56678877443
No 302
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=24.53 E-value=1.5e+02 Score=21.99 Aligned_cols=19 Identities=11% Similarity=0.230 Sum_probs=13.4
Q ss_pred hHHHHHHhcCCCEEEeCCC
Q 030626 4 NYLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG 22 (174)
++.+.+...++||||+.++
T Consensus 46 ~~l~~~~~~~vdgii~~~~ 64 (273)
T cd06305 46 DQIDQAIAQKVDAIIIQHG 64 (273)
T ss_pred HHHHHHHHcCCCEEEEecC
Confidence 3455566668999999754
No 303
>cd08193 HVD 5-hydroxyvalerate dehydrogenase (HVD) catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. 5-hydroxyvalerate dehydrogenase (HVD) is an iron-containing (type III) NAD-dependent alcohol dehydrogenase. It plays a role in the cyclopentanol metabolism biochemical pathway. It catalyzes the oxidation of 5-hydroxyvalerate to 5-oxovalerate with NAD+ as cofactor. This cyclopentanol (cpn) degradation pathway is present in some bacteria which can use cyclopentanol as sole carbon source. In Comamonas sp. strain NCIMB 9872, this enzyme is encoded by the CpnD gene.
Probab=24.47 E-value=1e+02 Score=25.10 Aligned_cols=9 Identities=22% Similarity=0.257 Sum_probs=4.2
Q ss_pred cEEeehHhH
Q 030626 44 PLFGVCMGL 52 (174)
Q Consensus 44 PilGIC~G~ 52 (174)
-|+||..|.
T Consensus 86 ~IIaiGGGs 94 (376)
T cd08193 86 GVIGFGGGS 94 (376)
T ss_pred EEEEeCCch
Confidence 345554443
No 304
>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family. The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.
Probab=24.28 E-value=1.5e+02 Score=22.96 Aligned_cols=44 Identities=20% Similarity=0.384 Sum_probs=25.1
Q ss_pred hcCCCEEEeCCCCCCCCCcchhHHHHHHc-C-CCCcEEe-ehHh-HHHHHHHhC
Q 030626 11 RKNPRGVLISPGPGAPQDSGISLQTVLEL-G-PTVPLFG-VCMG-LQCIGEAFG 60 (174)
Q Consensus 11 ~~~~dgiii~GG~~~~~~~~~~~~~i~~~-~-~~~PilG-IC~G-~Qll~~~~g 60 (174)
+.++|.||+.||-|+.. +.+..+ . .+.|.+| |=.| .-.++..+|
T Consensus 55 ~~~~d~ivv~GGDGTl~------~v~~~l~~~~~~~~lgiiP~Gt~N~~a~~l~ 102 (293)
T TIGR00147 55 KFGVDTVIAGGGDGTIN------EVVNALIQLDDIPALGILPLGTANDFARSLG 102 (293)
T ss_pred hcCCCEEEEECCCChHH------HHHHHHhcCCCCCcEEEEcCcCHHHHHHHcC
Confidence 34689999999988743 222221 1 3467777 4444 233344454
No 305
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=23.85 E-value=1.4e+02 Score=22.21 Aligned_cols=42 Identities=17% Similarity=0.131 Sum_probs=27.3
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcE
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPL 45 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~Pi 45 (174)
+-.+++.++.++.|+=+||+.+..+.-..++.+.+ .+.++-|
T Consensus 131 ~al~~L~~lG~~rVLTSGg~~~a~~g~~~L~~lv~~a~~~i~I 173 (201)
T PF03932_consen 131 EALEQLIELGFDRVLTSGGAPTALEGIENLKELVEQAKGRIEI 173 (201)
T ss_dssp HHHHHHHHHT-SEEEESTTSSSTTTCHHHHHHHHHHHTTSSEE
T ss_pred HHHHHHHhcCCCEEECCCCCCCHHHHHHHHHHHHHHcCCCcEE
Confidence 34567777899999999999877766555555443 3334433
No 306
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=23.78 E-value=1.7e+02 Score=22.81 Aligned_cols=17 Identities=12% Similarity=0.298 Sum_probs=11.9
Q ss_pred HHHHHhcCCCEEEeCCC
Q 030626 6 LVSYCRKNPRGVLISPG 22 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG 22 (174)
.++....++|+|++.+.
T Consensus 84 i~~~ia~~~daIiv~~~ 100 (322)
T COG1879 84 IEDLIAQGVDAIIINPV 100 (322)
T ss_pred HHHHHHcCCCEEEEcCC
Confidence 34445568999999754
No 307
>TIGR00683 nanA N-acetylneuraminate lyase. N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.
Probab=23.41 E-value=1.7e+02 Score=22.95 Aligned_cols=45 Identities=9% Similarity=0.056 Sum_probs=27.4
Q ss_pred HHHHHHhcC-CCEEEeCCCCCCCCCc-----chhHHHHHH-cCCCCcEEeeh
Q 030626 5 YLVSYCRKN-PRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVPLFGVC 49 (174)
Q Consensus 5 ~~~~~~~~~-~dgiii~GG~~~~~~~-----~~~~~~i~~-~~~~~PilGIC 49 (174)
..+.+.+.. .|||++.|+.|-..-- ..+++...+ ...++||+.-+
T Consensus 26 ~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv 77 (290)
T TIGR00683 26 IIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQV 77 (290)
T ss_pred HHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEec
Confidence 445555567 9999999987754322 123344443 56678986544
No 308
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=23.38 E-value=1.2e+02 Score=22.51 Aligned_cols=30 Identities=13% Similarity=0.211 Sum_probs=17.3
Q ss_pred CCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeeh
Q 030626 14 PRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 49 (174)
Q Consensus 14 ~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC 49 (174)
||.||+..-. .....+++.. .-++|++|+|
T Consensus 144 P~~vii~~~~----~~~~~i~Ea~--~l~IP~i~i~ 173 (211)
T PF00318_consen 144 PDLVIILDPN----KNKNAIREAN--KLNIPTIAIV 173 (211)
T ss_dssp BSEEEESSTT----TTHHHHHHHH--HTTS-EEEEE
T ss_pred CcEEEEeccc----ccchhHHHHH--hcCceEEEee
Confidence 7888876432 2222333333 3469999999
No 309
>TIGR02667 moaB_proteo molybdenum cofactor biosynthesis protein B, proteobacterial. This model represents the MoaB protein molybdopterin biosynthesis regions in Proteobacteria. This crystallized but incompletely characterized protein is thought to be involved in, though not required for, early steps in molybdopterin biosynthesis. It may bind a molybdopterin precursor. A distinctive conserved motif PCN near the C-terminus helps distinguish this clade from other homologs, including sets of proteins designated MogA.
Probab=23.36 E-value=2.1e+02 Score=20.30 Aligned_cols=13 Identities=31% Similarity=0.529 Sum_probs=10.7
Q ss_pred CCCEEEeCCCCCC
Q 030626 13 NPRGVLISPGPGA 25 (174)
Q Consensus 13 ~~dgiii~GG~~~ 25 (174)
.+|.||++||-+-
T Consensus 63 ~~DlVIttGGtg~ 75 (163)
T TIGR02667 63 DVQVILITGGTGF 75 (163)
T ss_pred CCCEEEECCCcCC
Confidence 5899999998663
No 310
>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.33 E-value=1.6e+02 Score=21.93 Aligned_cols=18 Identities=22% Similarity=0.510 Sum_probs=13.1
Q ss_pred HHHHHHhcCCCEEEeCCC
Q 030626 5 YLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG 22 (174)
+.+.+...++||||+.+.
T Consensus 49 ~i~~l~~~~vdgvii~~~ 66 (273)
T cd06310 49 LLENAIARGPDAILLAPT 66 (273)
T ss_pred HHHHHHHhCCCEEEEcCC
Confidence 455566678999999754
No 311
>PRK09423 gldA glycerol dehydrogenase; Provisional
Probab=23.24 E-value=92 Score=25.25 Aligned_cols=39 Identities=18% Similarity=0.075 Sum_probs=21.1
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehH
Q 030626 7 VSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCM 50 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~ 50 (174)
+...+.++|.||-.|| |++-|..+.+... .++|++.|.-
T Consensus 78 ~~~~~~~~d~IIavGG-Gsv~D~aK~iA~~----~~~p~i~IPT 116 (366)
T PRK09423 78 AIAEENGCDVVIGIGG-GKTLDTAKAVADY----LGVPVVIVPT 116 (366)
T ss_pred HHHHhcCCCEEEEecC-hHHHHHHHHHHHH----cCCCEEEeCC
Confidence 3344456777776665 5555554444322 2467666664
No 312
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=23.15 E-value=1.6e+02 Score=22.02 Aligned_cols=39 Identities=18% Similarity=0.254 Sum_probs=20.9
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 48 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI 48 (174)
.+.+...++||||+.+...+ .....++.+. ..++|++.+
T Consensus 50 i~~l~~~~vdgiIi~~~~~~--~~~~~~~~~~--~~~iPvV~~ 88 (275)
T cd06320 50 AENMINKGYKGLLFSPISDV--NLVPAVERAK--KKGIPVVNV 88 (275)
T ss_pred HHHHHHhCCCEEEECCCChH--HhHHHHHHHH--HCCCeEEEE
Confidence 44555568999998754221 1112223332 346787665
No 313
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=23.11 E-value=66 Score=24.73 Aligned_cols=23 Identities=13% Similarity=0.297 Sum_probs=17.9
Q ss_pred chHHHHHHhc-CCCEEEeCCCCCC
Q 030626 3 VNYLVSYCRK-NPRGVLISPGPGA 25 (174)
Q Consensus 3 ~~~~~~~~~~-~~dgiii~GG~~~ 25 (174)
.+|.+++.+. .+|-+||.|||.-
T Consensus 14 ~~~~~~~~~~~~~DVvIVGgGpAG 37 (257)
T PRK04176 14 EEYFEKLLDYLEVDVAIVGAGPSG 37 (257)
T ss_pred HHHHHHHHHhccCCEEEECccHHH
Confidence 3678888764 6899999999764
No 314
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=23.10 E-value=1.7e+02 Score=21.83 Aligned_cols=19 Identities=5% Similarity=0.282 Sum_probs=13.7
Q ss_pred hHHHHHHhcCCCEEEeCCC
Q 030626 4 NYLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG 22 (174)
+..+.+...++||+|+.+.
T Consensus 47 ~~i~~l~~~~vdgiii~~~ 65 (272)
T cd06301 47 SQVENFIAQGVDAIIVVPV 65 (272)
T ss_pred HHHHHHHHcCCCEEEEecC
Confidence 3455666778999999764
No 315
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=23.02 E-value=2.7e+02 Score=20.29 Aligned_cols=52 Identities=15% Similarity=0.208 Sum_probs=30.7
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHh---------HHHHHHHhCCe
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG---------LQCIGEAFGGK 62 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G---------~Qll~~~~gg~ 62 (174)
-.|.+..++||.||..+.. ........+ ...++|++.+..+ ...|+.++|..
T Consensus 52 ~~E~i~~l~PDlIi~~~~~----~~~~~~~~~--~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 52 NLEAILALKPDLIIGSSFY----GQSEEIEKL--LEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp -HHHHHHT--SEEEEETTS----SCHHHHHHH--HHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred cHHHHHhCCCCEEEEeccc----cchHHHHHH--hcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 3588899999999987765 111222222 3345888887776 35566677743
No 316
>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A ....
Probab=23.02 E-value=1.8e+02 Score=21.54 Aligned_cols=43 Identities=14% Similarity=0.177 Sum_probs=24.2
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHh
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMG 51 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G 51 (174)
..+.+...++||||+.+.... .....++.+. ..++|++.+=..
T Consensus 47 ~i~~~i~~~~d~Iiv~~~~~~--~~~~~l~~~~--~~gIpvv~~d~~ 89 (257)
T PF13407_consen 47 QIEQAISQGVDGIIVSPVDPD--SLAPFLEKAK--AAGIPVVTVDSD 89 (257)
T ss_dssp HHHHHHHTTESEEEEESSSTT--TTHHHHHHHH--HTTSEEEEESST
T ss_pred HHHHHHHhcCCEEEecCCCHH--HHHHHHHHHh--hcCceEEEEecc
Confidence 445566668999998754332 2223333333 345787775443
No 317
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=22.86 E-value=1.8e+02 Score=18.11 Aligned_cols=43 Identities=19% Similarity=0.274 Sum_probs=29.4
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeeh
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 49 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC 49 (174)
.+.+....+|.+++--.... .+...+++.++....+.|++.++
T Consensus 36 ~~~~~~~~~d~iiid~~~~~-~~~~~~~~~i~~~~~~~~ii~~t 78 (112)
T PF00072_consen 36 LELLKKHPPDLIIIDLELPD-GDGLELLEQIRQINPSIPIIVVT 78 (112)
T ss_dssp HHHHHHSTESEEEEESSSSS-SBHHHHHHHHHHHTTTSEEEEEE
T ss_pred HHHhcccCceEEEEEeeecc-ccccccccccccccccccEEEec
Confidence 45566677899887643332 34445677777766889999887
No 318
>cd07399 MPP_YvnB Bacillus subtilis YvnB and related proteins, metallophosphatase domain. YvnB (BSU35040) is an uncharacterized Bacillus subtilis protein with a metallophosphatase domain. This family includes bacterial and eukaryotic proteins similar to YvnB. YvnB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for
Probab=22.86 E-value=1.1e+02 Score=22.74 Aligned_cols=46 Identities=13% Similarity=-0.099 Sum_probs=25.4
Q ss_pred HHHHhcCCCEEEeCCCCCCCCC-cch---hHHHHHHcC-CCCcEEeehHhH
Q 030626 7 VSYCRKNPRGVLISPGPGAPQD-SGI---SLQTVLELG-PTVPLFGVCMGL 52 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~-~~~---~~~~i~~~~-~~~PilGIC~G~ 52 (174)
+.+.+.++|.||++|--.+... ... +.+.+..+. .++|++-+-.-|
T Consensus 29 ~~~~~~~~d~iv~~GDl~~~~~~~~~~~~~~~~~~~l~~~~~p~~~~~GNH 79 (214)
T cd07399 29 DNAEALNIAFVLHLGDIVDDGDNDAEWEAADKAFARLDKAGIPYSVLAGNH 79 (214)
T ss_pred HHHHHcCCCEEEECCCccCCCCCHHHHHHHHHHHHHHHHcCCcEEEECCCC
Confidence 3444567999999886554333 222 223333443 568887544444
No 319
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=22.78 E-value=2.1e+02 Score=21.31 Aligned_cols=17 Identities=12% Similarity=0.114 Sum_probs=11.7
Q ss_pred HHHHhcCCCEEEeCCCC
Q 030626 7 VSYCRKNPRGVLISPGP 23 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~ 23 (174)
+.+...++||||+.+..
T Consensus 58 ~~l~~~~~dgiii~~~~ 74 (275)
T cd06295 58 RYLASGRADGVILIGQH 74 (275)
T ss_pred HHHHhCCCCEEEEeCCC
Confidence 34445689999997643
No 320
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=22.62 E-value=2.3e+02 Score=20.45 Aligned_cols=26 Identities=15% Similarity=0.336 Sum_probs=15.6
Q ss_pred HHHHHHhcCCC--EEEeCCCCCCCCCcc
Q 030626 5 YLVSYCRKNPR--GVLISPGPGAPQDSG 30 (174)
Q Consensus 5 ~~~~~~~~~~d--giii~GG~~~~~~~~ 30 (174)
+++++.+.... .+|+|.+.|+..|..
T Consensus 67 ~~~~l~~~~~~~~v~IvSNsaGs~~d~~ 94 (168)
T PF09419_consen 67 WLNELKKQFGKDRVLIVSNSAGSSDDPD 94 (168)
T ss_pred HHHHHHHHCCCCeEEEEECCCCcccCcc
Confidence 44555544443 677788877766543
No 321
>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=22.56 E-value=1.8e+02 Score=21.47 Aligned_cols=19 Identities=11% Similarity=0.181 Sum_probs=13.6
Q ss_pred hHHHHHHhcCCCEEEeCCC
Q 030626 4 NYLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG 22 (174)
++.+.+...++||+|+.+.
T Consensus 47 ~~~~~l~~~~vdgiii~~~ 65 (264)
T cd01574 47 AAVRRLLAQRVDGVIVNAP 65 (264)
T ss_pred HHHHHHHhcCCCEEEEeCC
Confidence 3455666678999998764
No 322
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=22.48 E-value=1.9e+02 Score=22.53 Aligned_cols=18 Identities=22% Similarity=0.294 Sum_probs=15.1
Q ss_pred CCCEEEeCCCCCCCCCcc
Q 030626 13 NPRGVLISPGPGAPQDSG 30 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~ 30 (174)
++|-||++||-|-..|+-
T Consensus 60 r~D~vI~tGGLGPT~DDi 77 (255)
T COG1058 60 RADVVITTGGLGPTHDDL 77 (255)
T ss_pred CCCEEEECCCcCCCccHh
Confidence 499999999999877653
No 323
>cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain. MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO).
Probab=22.34 E-value=3.9e+02 Score=21.91 Aligned_cols=59 Identities=20% Similarity=0.284 Sum_probs=36.2
Q ss_pred HHHHhcCCCEEEeCCCCCCCCCc-ch---hHHHHHHcCCCCcEE---eehHhHHHH-HHHhCCeeccC
Q 030626 7 VSYCRKNPRGVLISPGPGAPQDS-GI---SLQTVLELGPTVPLF---GVCMGLQCI-GEAFGGKIVRS 66 (174)
Q Consensus 7 ~~~~~~~~dgiii~GG~~~~~~~-~~---~~~~i~~~~~~~Pil---GIC~G~Qll-~~~~gg~v~~~ 66 (174)
....+..+|+|++++.-|.-.+. .. .+..+.+.- ++||+ ||..|.-++ +.++|+...-.
T Consensus 251 ~~a~~~G~d~I~VSnhGGrqld~~~~~~~~L~ei~~~~-~~~vi~dGGIr~g~Dv~KALaLGA~aV~i 317 (361)
T cd04736 251 KRCIELGADGVILSNHGGRQLDDAIAPIEALAEIVAAT-YKPVLIDSGIRRGSDIVKALALGANAVLL 317 (361)
T ss_pred HHHHHCCcCEEEECCCCcCCCcCCccHHHHHHHHHHHh-CCeEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 34455689999999865644332 11 223333321 38888 788888887 56777665443
No 324
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=22.33 E-value=2.4e+02 Score=20.80 Aligned_cols=19 Identities=21% Similarity=0.494 Sum_probs=14.1
Q ss_pred HHHHHHhcCCCEEEeCCCC
Q 030626 5 YLVSYCRKNPRGVLISPGP 23 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~ 23 (174)
..+.+...++||||+.+..
T Consensus 47 ~~~~l~~~~vdgiIi~~~~ 65 (265)
T cd06299 47 YLDNLLSQRVDGIIVVPHE 65 (265)
T ss_pred HHHHHHhcCCCEEEEcCCC
Confidence 3455667789999998753
No 325
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=22.30 E-value=1.4e+02 Score=23.83 Aligned_cols=40 Identities=25% Similarity=0.287 Sum_probs=22.7
Q ss_pred HHHHHhcCCCEEEeCCCCCCCCCcch---hHHHHHH--cCCCCcEEeeh
Q 030626 6 LVSYCRKNPRGVLISPGPGAPQDSGI---SLQTVLE--LGPTVPLFGVC 49 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~~~~~~~~~---~~~~i~~--~~~~~PilGIC 49 (174)
.+.|. +.|.|||. |+|++-+-- ....|++ ...+-|+.+||
T Consensus 178 l~AI~--~AD~IVlG--Pgsp~TSI~P~LlVpgI~eAL~~s~A~vV~Vs 222 (303)
T cd07186 178 LEAIE--DADLVIIG--PSNPVTSIGPILALPGIREALRDKKAPVVAVS 222 (303)
T ss_pred HHHHH--hCCEEEEC--CCccHHHhhhhccchhHHHHHHhCCCCEEEEc
Confidence 34454 46899985 556553321 2233443 23457999999
No 326
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=22.27 E-value=71 Score=24.54 Aligned_cols=22 Identities=14% Similarity=0.378 Sum_probs=17.4
Q ss_pred chHHHHHHhc-CCCEEEeCCCCC
Q 030626 3 VNYLVSYCRK-NPRGVLISPGPG 24 (174)
Q Consensus 3 ~~~~~~~~~~-~~dgiii~GG~~ 24 (174)
.+|.+++.+. .+|-+||.||+.
T Consensus 10 ~~~~~~~~~~~~~DVvIVGgGpA 32 (254)
T TIGR00292 10 ERYFEDLLDYAESDVIIVGAGPS 32 (254)
T ss_pred HHHHHHHHHhcCCCEEEECCCHH
Confidence 3678888764 799999999976
No 327
>cd07766 DHQ_Fe-ADH Dehydroquinate synthase-like (DHQ-like) and iron-containing alcohol dehydrogenases (Fe-ADH). Dehydroquinate synthase-like. This superfamily divides into two subgroups: the dehydroquinate synthase-like, and a large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. Dehydroquinate synthase (DHQS) catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate-7-phosphate (DAHP) to dehydroquinate (DHQ) in the second step of the shikimate pathway. This pathway involves seven sequential enzymatic steps in the conversion of erythrose 4-phosphate and phosphoenolpyruvate into chorismate for subsequent synthesis of aromatic compounds. Dehydroquinate synthase-like group includes dehydroquinate synthase, 2-deoxy-scyllo-inosose synthase, and 2-epi-5-epi-valiolone synthase. The alcohol dehydrogenases in this superfamily contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alc
Probab=22.26 E-value=1e+02 Score=24.40 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=18.7
Q ss_pred HHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeeh
Q 030626 9 YCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 49 (174)
Q Consensus 9 ~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC 49 (174)
+...++|.||-.|| |+.-|..+.+...+. +++|++.|.
T Consensus 74 ~~~~~~d~IIaiGG-Gs~~D~aK~ia~~~~--~~~p~i~iP 111 (332)
T cd07766 74 ARAAEVDAVIAVGG-GSTLDTAKAVAALLN--RGLPIIIVP 111 (332)
T ss_pred HHhcCcCEEEEeCC-chHHHHHHHHHHHhc--CCCCEEEEe
Confidence 33345677775554 444444444333322 356666554
No 328
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants. The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....
Probab=21.84 E-value=1.8e+02 Score=22.53 Aligned_cols=48 Identities=15% Similarity=0.125 Sum_probs=30.6
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcc-----hhHHHHHH-cCCCCcEEeehHh
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSG-----ISLQTVLE-LGPTVPLFGVCMG 51 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~-----~~~~~i~~-~~~~~PilGIC~G 51 (174)
++.+.+.+...|||++.|..|-..... .+.+...+ ...++|++.-+.+
T Consensus 26 ~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~ 79 (289)
T PF00701_consen 26 RLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGA 79 (289)
T ss_dssp HHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEES
T ss_pred HHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcc
Confidence 345556667899999999877543221 23344433 5678998886665
No 329
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=21.82 E-value=1.4e+02 Score=23.24 Aligned_cols=31 Identities=10% Similarity=0.267 Sum_probs=18.0
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeeh
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 49 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC 49 (174)
-||.||+..-. .....+++. ..-++|+.|+|
T Consensus 157 ~Pd~iii~d~~----~~~~ai~Ea--~kl~IPiIaiv 187 (258)
T PRK05299 157 LPDALFVVDPN----KEHIAVKEA--RKLGIPVVAIV 187 (258)
T ss_pred CCCEEEEeCCC----ccHHHHHHH--HHhCCCEEEEe
Confidence 47888876432 222222332 34469999999
No 330
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=21.81 E-value=1.5e+02 Score=24.15 Aligned_cols=7 Identities=14% Similarity=0.344 Sum_probs=3.5
Q ss_pred EEeehHh
Q 030626 45 LFGVCMG 51 (174)
Q Consensus 45 ilGIC~G 51 (174)
|+||..|
T Consensus 85 IIavGGG 91 (375)
T cd08179 85 IIALGGG 91 (375)
T ss_pred EEEeCCc
Confidence 4555544
No 331
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=21.81 E-value=2e+02 Score=21.11 Aligned_cols=40 Identities=15% Similarity=0.222 Sum_probs=21.9
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeeh
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVC 49 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC 49 (174)
..+.+...++||||+.++... ....++.+. ..++|++.+.
T Consensus 47 ~~~~l~~~~vdgiii~~~~~~---~~~~~~~~~--~~~ipvV~~~ 86 (266)
T cd06282 47 AVETLLRQRVDGLILTVADAA---TSPALDLLD--AERVPYVLAY 86 (266)
T ss_pred HHHHHHhcCCCEEEEecCCCC---chHHHHHHh--hCCCCEEEEe
Confidence 445565668999999754321 112223332 3457776553
No 332
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=21.74 E-value=1.6e+02 Score=23.50 Aligned_cols=18 Identities=6% Similarity=0.348 Sum_probs=13.3
Q ss_pred hHHHHHHhcCCCEEEeCC
Q 030626 4 NYLVSYCRKNPRGVLISP 21 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~G 21 (174)
...+.+...++|||++++
T Consensus 71 ~~i~~li~~~vdgIiv~~ 88 (336)
T PRK15408 71 QLINNFVNQGYNAIIVSA 88 (336)
T ss_pred HHHHHHHHcCCCEEEEec
Confidence 345666667899999964
No 333
>TIGR03868 F420-O_ABCperi proposed F420-0 ABC transporter, periplasmic F420-0 binding protein. This small clade of ABC-type transporter periplasmic binding protein components is found as a three gene cassette along with a permease (TIGR03869) and an ATPase (TIGR03873). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this periplasmic binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=21.71 E-value=1.7e+02 Score=22.33 Aligned_cols=42 Identities=10% Similarity=-0.020 Sum_probs=24.4
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 48 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI 48 (174)
-.|.+..+++|.||...+.....+.....+.+.+. ++|++-+
T Consensus 70 n~E~i~~l~PDlvi~~~~~~~~~~~~~~~~~l~~~--gipv~~~ 111 (287)
T TIGR03868 70 SPEAVLETEPDLVYAGWESNLTAEGAGERADLASL--GVNTYVA 111 (287)
T ss_pred CHhHhhcCCCCEEEeccccccCCCCCCCHHHHHHC--CCeEEEC
Confidence 37888899999998743322111122334455444 4888754
No 334
>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase.) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.
Probab=21.69 E-value=1.1e+02 Score=22.90 Aligned_cols=41 Identities=20% Similarity=0.156 Sum_probs=20.6
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHHcC--CCCcEEeehHhHH
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLELG--PTVPLFGVCMGLQ 53 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~~~--~~~PilGIC~G~Q 53 (174)
.+|.+=+..-+.+..|.-.+++...... .++|+.++|+|-.
T Consensus 143 gadivKla~~~~~~~D~~~ll~~~~~~~~~~~~p~i~~~MG~~ 185 (225)
T cd00502 143 GADIVKIAVMANSIEDNLRLLKFTRQVKNLYDIPLIAINMGEL 185 (225)
T ss_pred CCCEEEEEecCCCHHHHHHHHHHHHHHHhcCCCCEEEEEcCCC
Confidence 3444444433333333333333333322 2579999998864
No 335
>PRK13016 dihydroxy-acid dehydratase; Provisional
Probab=21.58 E-value=1.6e+02 Score=25.73 Aligned_cols=52 Identities=25% Similarity=0.365 Sum_probs=33.9
Q ss_pred hcCCCEEEeCCCCCCCCCc-c-------hh-------------HHHHHH-cCCCCcEEeehHh------HHHHHHHhCCe
Q 030626 11 RKNPRGVLISPGPGAPQDS-G-------IS-------------LQTVLE-LGPTVPLFGVCMG------LQCIGEAFGGK 62 (174)
Q Consensus 11 ~~~~dgiii~GG~~~~~~~-~-------~~-------------~~~i~~-~~~~~PilGIC~G------~Qll~~~~gg~ 62 (174)
++|.=.|+++||+..+... + .. .+.+.+ ...-.|--|.|.| ||++++++|-.
T Consensus 138 rlniPsI~v~GG~m~~G~~~g~~~~~~~~~~e~~g~~~~G~i~~eel~~~e~~a~p~~GsC~gmgTANTM~~~~EaLGm~ 217 (577)
T PRK13016 138 SMGLPMIYLPAGPMLRGNYRGKVLGSGSDAWKYWDERRAGNITQAEWLEIEGGIARSYGTCMTMGTASTMTAIAEALGLT 217 (577)
T ss_pred hcCCCEEEEecCCCCCCccCCceechhHHHHHHHHHHHcCCCCHHHHHHHHhccCCCCCcccccCHHHHHHHHHHHHhcC
Confidence 4566788999998766421 1 10 122222 2356899999998 79999998843
No 336
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.56 E-value=2.4e+02 Score=20.95 Aligned_cols=19 Identities=32% Similarity=0.676 Sum_probs=13.8
Q ss_pred HHHHHHhcCCCEEEeCCCC
Q 030626 5 YLVSYCRKNPRGVLISPGP 23 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~ 23 (174)
..+.+...++||||+.++.
T Consensus 47 ~i~~l~~~~vdgii~~~~~ 65 (269)
T cd06281 47 ILRSFEQRRMDGIIIAPGD 65 (269)
T ss_pred HHHHHHHcCCCEEEEecCC
Confidence 4455666789999998753
No 337
>CHL00067 rps2 ribosomal protein S2
Probab=21.49 E-value=1.2e+02 Score=23.03 Aligned_cols=30 Identities=17% Similarity=0.127 Sum_probs=18.3
Q ss_pred CCCEEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeeh
Q 030626 13 NPRGVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVC 49 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC 49 (174)
-||.||+..-.. .. .++.+ ..-++|++|||
T Consensus 161 ~P~~iiv~d~~~----~~---~ai~Ea~~l~IPvIaiv 191 (230)
T CHL00067 161 LPDIVIIIDQQE----EY---TALRECRKLGIPTISIL 191 (230)
T ss_pred CCCEEEEeCCcc----cH---HHHHHHHHcCCCEEEEE
Confidence 478888764432 11 23333 34569999999
No 338
>PRK04147 N-acetylneuraminate lyase; Provisional
Probab=21.24 E-value=2.8e+02 Score=21.67 Aligned_cols=43 Identities=16% Similarity=0.115 Sum_probs=26.5
Q ss_pred HHHHHHh-cCCCEEEeCCCCCCCCCc--c---hhHHHHHH-cCCCCcEEe
Q 030626 5 YLVSYCR-KNPRGVLISPGPGAPQDS--G---ISLQTVLE-LGPTVPLFG 47 (174)
Q Consensus 5 ~~~~~~~-~~~dgiii~GG~~~~~~~--~---~~~~~i~~-~~~~~PilG 47 (174)
..+.+.+ ...+||++.|..|-.... . .+++...+ ...++||+.
T Consensus 29 li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~via 78 (293)
T PRK04147 29 LVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIA 78 (293)
T ss_pred HHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEe
Confidence 4555666 789999999977754322 1 23344443 566788765
No 339
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=21.23 E-value=75 Score=25.85 Aligned_cols=45 Identities=24% Similarity=0.292 Sum_probs=29.2
Q ss_pred CCCEEEeCCCCCCCCCc--chhHHHHHHcCCCCcEEeeh--HhHHHHHH
Q 030626 13 NPRGVLISPGPGAPQDS--GISLQTVLELGPTVPLFGVC--MGLQCIGE 57 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~--~~~~~~i~~~~~~~PilGIC--~G~Qll~~ 57 (174)
+.|+|.++-|||++.-- +.....-....-++|++||+ .||-+.+.
T Consensus 70 did~Iavt~GPGl~~~LrVG~~~Ak~LA~a~~~PligV~HlegHi~a~~ 118 (345)
T PTZ00340 70 DISLICYTKGPGMGAPLSVGAVVARTLSLLWGKPLVGVNHCVAHIEMGR 118 (345)
T ss_pred HCCEEEEecCCCcHhhHHHHHHHHHHHHHHcCCCEeecchHHHHHHHHh
Confidence 57999999999975432 22223333455679999997 45554443
No 340
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=21.16 E-value=3.5e+02 Score=21.40 Aligned_cols=67 Identities=21% Similarity=0.129 Sum_probs=37.5
Q ss_pred CCchHHHHHHhcCCCEEEeCCCCCCC------CCcc------hhHHHHHH---cC----CCCcEEeehHhHHHHHHHhCC
Q 030626 1 MSVNYLVSYCRKNPRGVLISPGPGAP------QDSG------ISLQTVLE---LG----PTVPLFGVCMGLQCIGEAFGG 61 (174)
Q Consensus 1 ~~~~~~~~~~~~~~dgiii~GG~~~~------~~~~------~~~~~i~~---~~----~~~PilGIC~G~Qll~~~~gg 61 (174)
||....+-+...+||.|||+|=-+-. .+.. .+.+.++. .. .=+=+-|-|..+=-.-...|+
T Consensus 141 qp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaVk~aR~y~~~~D~LVIFAGACQS~yEall~AGA 220 (283)
T TIGR02855 141 MPEKVLDLIEEVRPDILVITGHDAYSKNKGNYMDLNAYRHSKYFVETVREARKYVPSLDQLVIFAGACQSHFESLIRAGA 220 (283)
T ss_pred chHHHHHHHHHhCCCEEEEeCchhhhcCCCChhhhhhhhhhHHHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCc
Confidence 35556666777899999999854322 1111 13344443 22 223356777766544445577
Q ss_pred eeccCC
Q 030626 62 KIVRSP 67 (174)
Q Consensus 62 ~v~~~~ 67 (174)
+....+
T Consensus 221 NFASSP 226 (283)
T TIGR02855 221 NFASSP 226 (283)
T ss_pred cccCCc
Confidence 665555
No 341
>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein. Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.
Probab=21.15 E-value=1.6e+02 Score=22.69 Aligned_cols=18 Identities=11% Similarity=0.194 Sum_probs=14.0
Q ss_pred hHHHHHHhcCCCEEEeCC
Q 030626 4 NYLVSYCRKNPRGVLISP 21 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~G 21 (174)
+..+.+...++||||+.+
T Consensus 45 ~~i~~l~~~~vDgIIi~~ 62 (302)
T TIGR02634 45 SQIENLIARGVDVLVIIP 62 (302)
T ss_pred HHHHHHHHcCCCEEEEeC
Confidence 456677777899999975
No 342
>PF07271 Cytadhesin_P30: Cytadhesin P30/P32; InterPro: IPR009896 This family consists of several Mycoplasma species specific Cytadhesin P32 and P30 proteins. P30 has been found to be membrane associated and localised on the tip organelle. It is thought that it is important in cytadherence and virulence [].; GO: 0007157 heterophilic cell-cell adhesion, 0009405 pathogenesis, 0016021 integral to membrane
Probab=20.96 E-value=55 Score=25.55 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=18.9
Q ss_pred CCcEEeehHhHHHHHHHhCCee
Q 030626 42 TVPLFGVCMGLQCIGEAFGGKI 63 (174)
Q Consensus 42 ~~PilGIC~G~Qll~~~~gg~v 63 (174)
-+|+.|.|.|+-+++..+|..+
T Consensus 69 ~~P~v~~~~G~~~v~liLgl~i 90 (279)
T PF07271_consen 69 FIPVVGGSAGLLAVALILGLAI 90 (279)
T ss_pred eeeeccchhhHHHHHHHHHHhh
Confidence 3899999999999999888544
No 343
>PF00940 RNA_pol: DNA-dependent RNA polymerase; InterPro: IPR002092 DNA-directed RNA polymerases 2.7.7.6 from EC (also known as DNA-dependent RNA polymerases) are responsible for the polymerisation of ribonucleotides into a sequence complementary to the template DNA. In eukaryotes, there are three different forms of DNA-directed RNA polymerases transcribing different sets of genes. Most RNA polymerases are multimeric enzymes and are composed of a variable number of subunits. The core RNA polymerase complex consists of five subunits (two alpha, one beta, one beta-prime and one omega) and is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. The core RNA polymerase complex forms a "crab claw"-like structure with an internal channel running along the full length []. The key functional sites of the enzyme, as defined by mutational and cross-linking analysis, are located on the inner wall of this channel. RNA synthesis follows after the attachment of RNA polymerase to a specific site, the promoter, on the template DNA strand. The RNA synthesis process continues until a termination sequence is reached. The RNA product, which is synthesised in the 5' to 3'direction, is known as the primary transcript. Eukaryotic nuclei contain three distinct types of RNA polymerases that differ in the RNA they synthesise: RNA polymerase I: located in the nucleoli, synthesises precursors of most ribosomal RNAs. RNA polymerase II: occurs in the nucleoplasm, synthesises mRNA precursors. RNA polymerase III: also occurs in the nucleoplasm, synthesises the precursors of 5S ribosomal RNA, the tRNAs, and a variety of other small nuclear and cytosolic RNAs. Eukaryotic cells are also known to contain separate mitochondrial and chloroplast RNA polymerases. Eukaryotic RNA polymerases, whose molecular masses vary in size from 500 to 700 kDa, contain two non-identical large (>100 kDa) subunits and an array of up to 12 different small (less than 50 kDa) subunits. The phage-type enzymes are family of single chain polymerases found in bacteriophages and mitochondria [].; GO: 0003677 DNA binding, 0003899 DNA-directed RNA polymerase activity, 0006351 transcription, DNA-dependent; PDB: 3SPA_A 1CEZ_A 1H38_B 1S77_D 1QLN_A 1S0V_D 3E2E_A 2PI4_A 3E3J_B 1S76_D ....
Probab=20.87 E-value=61 Score=26.86 Aligned_cols=20 Identities=30% Similarity=0.640 Sum_probs=14.9
Q ss_pred CCCcEE--eehHhHHHHHHHhC
Q 030626 41 PTVPLF--GVCMGLQCIGEAFG 60 (174)
Q Consensus 41 ~~~Pil--GIC~G~Qll~~~~g 60 (174)
.++||- |.|.|.|.++..++
T Consensus 85 s~lPV~~DgSCsGlQH~sal~r 106 (405)
T PF00940_consen 85 SHLPVHQDGSCSGLQHYSALLR 106 (405)
T ss_dssp E-SEEEEEBSTHHHHHHHHHTT
T ss_pred ecceeeecCcccHHHHHHHHcc
Confidence 456765 99999999996543
No 344
>COG2129 Predicted phosphoesterases, related to the Icc protein [General function prediction only]
Probab=20.87 E-value=2e+02 Score=21.98 Aligned_cols=55 Identities=11% Similarity=0.081 Sum_probs=33.0
Q ss_pred hHHHHHHhcCCCEEEeCCCCC--CCCCcchhHHH--HHH-cCCCCcEE---eehHhHHHHHHH
Q 030626 4 NYLVSYCRKNPRGVLISPGPG--APQDSGISLQT--VLE-LGPTVPLF---GVCMGLQCIGEA 58 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~--~~~~~~~~~~~--i~~-~~~~~Pil---GIC~G~Qll~~~ 58 (174)
++.+......+|.+|+.|.-. ...+.....+. +.+ ...++|++ |=|=..+++-..
T Consensus 21 k~~~~~~~~~~D~lviaGDlt~~~~~~~~~~~~~~~~e~l~~~~~~v~avpGNcD~~~v~~~l 83 (226)
T COG2129 21 KLLNAAADIRADLLVIAGDLTYFHFGPKEVAEELNKLEALKELGIPVLAVPGNCDPPEVIDVL 83 (226)
T ss_pred HHHHHHhhccCCEEEEecceehhhcCchHHHHhhhHHHHHHhcCCeEEEEcCCCChHHHHHHH
Confidence 345555556799999998876 33333333332 222 33567765 568888887654
No 345
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=20.82 E-value=2e+02 Score=24.00 Aligned_cols=55 Identities=24% Similarity=0.247 Sum_probs=32.2
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEeehHhHH----HHHHHhCCee
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGVCMGLQ----CIGEAFGGKI 63 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGIC~G~Q----ll~~~~gg~v 63 (174)
++.+++.+..+|+++|--. +|- +..-..+++.. +..++|+|-+-+ .|+..+|-..
T Consensus 126 ~i~~~i~~~~Pda~lin~T--NP~--~ivt~a~~k~~-~~rviGlc~~~~r~~~~ia~~lg~~~ 184 (419)
T cd05296 126 DIAEDVEELAPDAWLINFT--NPA--GIVTEAVLRHT-GDRVIGLCNVPIGLQRRIAELLGVDP 184 (419)
T ss_pred HHHHHHHHHCCCeEEEEec--CHH--HHHHHHHHHhc-cCCEEeeCCcHHHHHHHHHHHhCCCH
Confidence 4566777778888887522 221 12223344433 789999998853 4455566433
No 346
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=20.81 E-value=2.2e+02 Score=20.91 Aligned_cols=18 Identities=28% Similarity=0.523 Sum_probs=13.3
Q ss_pred HHHHHHhcCCCEEEeCCC
Q 030626 5 YLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG 22 (174)
+.+.+...++||||+.+.
T Consensus 47 ~~~~l~~~~~dgiii~~~ 64 (267)
T cd06283 47 YLESLLAYQVDGLIVNPT 64 (267)
T ss_pred HHHHHHHcCcCEEEEeCC
Confidence 445566678999999765
No 347
>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.
Probab=20.66 E-value=2e+02 Score=21.92 Aligned_cols=40 Identities=13% Similarity=0.235 Sum_probs=21.5
Q ss_pred HHHHHHhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEee
Q 030626 5 YLVSYCRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFGV 48 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilGI 48 (174)
..+.+...++||||+.+...+. ....++.+. ..++|+..+
T Consensus 47 ~i~~~~~~~vdgiii~~~~~~~--~~~~l~~l~--~~~ipvV~~ 86 (288)
T cd01538 47 QIENMIAKGVDVLVIAPVDGEA--LASAVEKAA--DAGIPVIAY 86 (288)
T ss_pred HHHHHHHcCCCEEEEecCChhh--HHHHHHHHH--HCCCCEEEE
Confidence 4455566789999997642211 122233322 245776655
No 348
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=20.51 E-value=2.3e+02 Score=20.92 Aligned_cols=19 Identities=21% Similarity=0.338 Sum_probs=13.9
Q ss_pred hHHHHHHhcCCCEEEeCCC
Q 030626 4 NYLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG 22 (174)
+..+.+...++||||+.+.
T Consensus 46 ~~i~~l~~~~vdgiii~~~ 64 (268)
T cd06298 46 KVLNNLLAKQVDGIIFMGG 64 (268)
T ss_pred HHHHHHHHhcCCEEEEeCC
Confidence 3455666678999999864
No 349
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.50 E-value=1.9e+02 Score=21.52 Aligned_cols=18 Identities=6% Similarity=0.080 Sum_probs=12.4
Q ss_pred HHHHHHhcCCCEEEeCCC
Q 030626 5 YLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG 22 (174)
..+.+...++||||+.+.
T Consensus 49 ~i~~~~~~~~dgiIi~~~ 66 (271)
T cd06321 49 QIDNFIAAKVDLILLNAV 66 (271)
T ss_pred HHHHHHHhCCCEEEEeCC
Confidence 344555668999999753
No 350
>PF07505 Gp37_Gp68: Phage protein Gp37/Gp68; InterPro: IPR011101 This entry is represented by Burkholderia phage phiE125, Gp37. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=20.48 E-value=1.8e+02 Score=22.65 Aligned_cols=40 Identities=18% Similarity=0.182 Sum_probs=25.6
Q ss_pred cCCCEEEeCCCCC--CCCCcchhHHHHHH--cCCCCcEEeehHh
Q 030626 12 KNPRGVLISPGPG--APQDSGISLQTVLE--LGPTVPLFGVCMG 51 (174)
Q Consensus 12 ~~~dgiii~GG~~--~~~~~~~~~~~i~~--~~~~~PilGIC~G 51 (174)
...|-||+.|=.| ..--..++.+.|++ ...++|++=-=.|
T Consensus 187 ~~IdWVIvGGESG~~ARp~~~~Wvr~irdqC~~~gvpFffKQwG 230 (261)
T PF07505_consen 187 EGIDWVIVGGESGPGARPMHPDWVRSIRDQCAAAGVPFFFKQWG 230 (261)
T ss_pred CCCCEEEECCCcCCCCCcCCHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 3577888776333 22233467777775 5688999876666
No 351
>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.44 E-value=2.2e+02 Score=21.00 Aligned_cols=19 Identities=11% Similarity=0.132 Sum_probs=14.4
Q ss_pred hHHHHHHhcCCCEEEeCCC
Q 030626 4 NYLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG 22 (174)
.+.+.+...++||+|+.+.
T Consensus 46 ~~i~~l~~~~~dgiii~~~ 64 (265)
T cd06290 46 EALELLKSRRVDALILLGG 64 (265)
T ss_pred HHHHHHHHCCCCEEEEeCC
Confidence 4556677778999999864
No 352
>PF14851 FAM176: FAM176 family
Probab=20.41 E-value=26 Score=24.97 Aligned_cols=21 Identities=29% Similarity=0.252 Sum_probs=15.9
Q ss_pred EEeehHhHHHHHHHhCCeecc
Q 030626 45 LFGVCMGLQCIGEAFGGKIVR 65 (174)
Q Consensus 45 ilGIC~G~Qll~~~~gg~v~~ 65 (174)
|+|||.|.-+.--++..++.-
T Consensus 27 v~gVC~GLlLtLcllV~risc 47 (153)
T PF14851_consen 27 VSGVCAGLLLTLCLLVIRISC 47 (153)
T ss_pred HHHHHHHHHHHHHHHHhhhee
Confidence 689999999887777655433
No 353
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=20.39 E-value=2.1e+02 Score=22.29 Aligned_cols=46 Identities=15% Similarity=0.280 Sum_probs=27.9
Q ss_pred hHHHHHHhcCCCEEEeCCCCCCCCCc-----chhHHHHHH-cCCCCcEE-eeh
Q 030626 4 NYLVSYCRKNPRGVLISPGPGAPQDS-----GISLQTVLE-LGPTVPLF-GVC 49 (174)
Q Consensus 4 ~~~~~~~~~~~dgiii~GG~~~~~~~-----~~~~~~i~~-~~~~~Pil-GIC 49 (174)
+..+.+.+...+||++.|+.|-..-- ..+++.+.+ ...++|++ |++
T Consensus 26 ~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~ 78 (292)
T PRK03170 26 KLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTG 78 (292)
T ss_pred HHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecC
Confidence 34555666689999999987755422 223344444 45567864 554
No 354
>PRK03670 competence damage-inducible protein A; Provisional
Probab=20.31 E-value=2.5e+02 Score=21.65 Aligned_cols=17 Identities=35% Similarity=0.616 Sum_probs=13.1
Q ss_pred CCCEEEeCCCCCCCCCc
Q 030626 13 NPRGVLISPGPGAPQDS 29 (174)
Q Consensus 13 ~~dgiii~GG~~~~~~~ 29 (174)
.+|.||++||-|...++
T Consensus 60 ~~DlVIttGGlGpt~dD 76 (252)
T PRK03670 60 KPEVLVISGGLGPTHDD 76 (252)
T ss_pred CCCEEEECCCccCCCCC
Confidence 47999999997765443
No 355
>KOG0721 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=20.29 E-value=95 Score=23.57 Aligned_cols=50 Identities=18% Similarity=0.276 Sum_probs=29.3
Q ss_pred CCcEEEEEcCCCceEEEeeCCCCceEEEecCCCCcCCCchHHHHHHHHHHHH
Q 030626 114 DALEVTAWTEDGLIMAARHKKYKHLQGVQFHPESIITTEGKTIVRNFIKMIV 165 (174)
Q Consensus 114 ~~~~~~a~s~~~~i~a~~~~~~~~~~g~QfHPE~~~~~~~~~l~~~f~~~~~ 165 (174)
+.+++++.+.......|. +.|. -+.++|||.+...+.+.+-+...+.++-
T Consensus 100 DPyEILGl~pgas~~eIK-kaYR-~LSik~HPDK~~~~~~~e~~~~~I~KAY 149 (230)
T KOG0721|consen 100 DPYEILGLDPGASEKEIK-KAYR-RLSIKYHPDKQPPEEGDEEFFEAIAKAY 149 (230)
T ss_pred CcHHhhCCCCCCCHHHHH-HHHH-HhhhhhCCCcCCCcchhHHHHHHHHHHH
Confidence 457777776554433332 2333 6899999999655455544444444443
No 356
>TIGR03436 acidobact_VWFA VWFA-related Acidobacterial domain. Members of this family are bacterial domains that include a region related to the von Willebrand factor type A (VWFA) domain (pfam00092). These domains are restricted to, and have undergone a large paralogous family expansion in, the Acidobacteria, including Solibacter usitatus and Acidobacterium capsulatum ATCC 51196.
Probab=20.12 E-value=1.8e+02 Score=22.57 Aligned_cols=49 Identities=16% Similarity=0.241 Sum_probs=30.1
Q ss_pred EEEeCCCCCCCCCcchhHHHHHH-cCCCCcEEeehHh--------------------HHHHHHHhCCeecc
Q 030626 16 GVLISPGPGAPQDSGISLQTVLE-LGPTVPLFGVCMG--------------------LQCIGEAFGGKIVR 65 (174)
Q Consensus 16 giii~GG~~~~~~~~~~~~~i~~-~~~~~PilGIC~G--------------------~Qll~~~~gg~v~~ 65 (174)
.|+|+.|..+.. ...+.+.+.. ...++++..|.+| ++-||..-||+...
T Consensus 168 iIllTDG~~~~~-~~~~~~~~~~~~~~~v~vy~I~~~~~~~~~~~~~~~~~~~~~~~L~~iA~~TGG~~~~ 237 (296)
T TIGR03436 168 LIVISDGGDNRS-RDTLERAIDAAQRADVAIYSIDARGLRAPDLGAGAKAGLGGPEALERLAEETGGRAFY 237 (296)
T ss_pred EEEEecCCCcch-HHHHHHHHHHHHHcCCEEEEeccCccccCCcccccccCCCcHHHHHHHHHHhCCeEec
Confidence 677777754322 1112222322 3467999999886 67778888887654
No 357
>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind
Probab=20.10 E-value=2.7e+02 Score=20.56 Aligned_cols=18 Identities=22% Similarity=0.320 Sum_probs=12.6
Q ss_pred HHHHHhcCCCEEEeCCCC
Q 030626 6 LVSYCRKNPRGVLISPGP 23 (174)
Q Consensus 6 ~~~~~~~~~dgiii~GG~ 23 (174)
.+.+...++||||+.+..
T Consensus 49 ~~~l~~~~vdgiii~~~~ 66 (270)
T cd01545 49 RALLQRSRVDGVILTPPL 66 (270)
T ss_pred HHHHHHCCCCEEEEeCCC
Confidence 344555689999998653
No 358
>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=20.09 E-value=2.1e+02 Score=21.15 Aligned_cols=18 Identities=17% Similarity=0.335 Sum_probs=12.9
Q ss_pred HHHHHHhcCCCEEEeCCC
Q 030626 5 YLVSYCRKNPRGVLISPG 22 (174)
Q Consensus 5 ~~~~~~~~~~dgiii~GG 22 (174)
..+.+...++||||+.+.
T Consensus 47 ~~~~~~~~~vdgiii~~~ 64 (267)
T cd06322 47 DVEDFITKKVDAIVLSPV 64 (267)
T ss_pred HHHHHHHcCCCEEEEcCC
Confidence 445566678999999753
No 359
>PF14340 DUF4395: Domain of unknown function (DUF4395)
Probab=20.09 E-value=38 Score=23.32 Aligned_cols=11 Identities=36% Similarity=0.754 Sum_probs=8.7
Q ss_pred EeehHhHHHHH
Q 030626 46 FGVCMGLQCIG 56 (174)
Q Consensus 46 lGIC~G~Qll~ 56 (174)
+|+|.|.++=.
T Consensus 116 fGfClGC~~y~ 126 (131)
T PF14340_consen 116 FGFCLGCFMYY 126 (131)
T ss_pred hhhhhhHHHHH
Confidence 59999998754
No 360
>PRK06455 riboflavin synthase; Provisional
Probab=20.08 E-value=1.7e+02 Score=20.91 Aligned_cols=15 Identities=20% Similarity=0.153 Sum_probs=11.1
Q ss_pred hcCCCEEEeCCCCCC
Q 030626 11 RKNPRGVLISPGPGA 25 (174)
Q Consensus 11 ~~~~dgiii~GG~~~ 25 (174)
..+||+||..|=.|.
T Consensus 54 ~~~yDaVIaLG~VG~ 68 (155)
T PRK06455 54 EEGCDIVMALGMPGP 68 (155)
T ss_pred cCCCCEEEEecceec
Confidence 356999999986554
No 361
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=20.06 E-value=3.5e+02 Score=21.43 Aligned_cols=67 Identities=19% Similarity=0.170 Sum_probs=38.2
Q ss_pred CCchHHHHHHhcCCCEEEeCCCCCCCC------Ccc------hhHHHHHH---cCC----CCcEEeehHhHHHHHHHhCC
Q 030626 1 MSVNYLVSYCRKNPRGVLISPGPGAPQ------DSG------ISLQTVLE---LGP----TVPLFGVCMGLQCIGEAFGG 61 (174)
Q Consensus 1 ~~~~~~~~~~~~~~dgiii~GG~~~~~------~~~------~~~~~i~~---~~~----~~PilGIC~G~Qll~~~~gg 61 (174)
||....+-+...+||-|||+|=-+-.. +.. .+.+.++. ... =+=+-|-|..|=-.-...|+
T Consensus 142 qp~~i~~Ll~~~~PDIlViTGHD~~~K~~~d~~dl~~YrnSkyFVeaV~~aR~~ep~~D~LVIfAGACQS~fEall~AGA 221 (287)
T PF05582_consen 142 QPEKIYRLLEEYRPDILVITGHDGYLKNKKDYSDLNNYRNSKYFVEAVKEARKYEPNLDDLVIFAGACQSHFEALLEAGA 221 (287)
T ss_pred hhHHHHHHHHHcCCCEEEEeCchhhhcCCCChhhhhhhhccHHHHHHHHHHHhcCCCcccEEEEcchhHHHHHHHHHcCc
Confidence 455666667778999999998544221 111 13344432 222 23356778776555555677
Q ss_pred eeccCC
Q 030626 62 KIVRSP 67 (174)
Q Consensus 62 ~v~~~~ 67 (174)
+....+
T Consensus 222 NFASSP 227 (287)
T PF05582_consen 222 NFASSP 227 (287)
T ss_pred cccCCc
Confidence 766555
No 362
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=20.04 E-value=1.4e+02 Score=23.15 Aligned_cols=11 Identities=9% Similarity=0.226 Sum_probs=9.0
Q ss_pred cCCCCcEEeeh
Q 030626 39 LGPTVPLFGVC 49 (174)
Q Consensus 39 ~~~~~PilGIC 49 (174)
..-++||+++|
T Consensus 176 ~klgIPVvAlv 186 (252)
T COG0052 176 NKLGIPVVALV 186 (252)
T ss_pred HHcCCCEEEEe
Confidence 44569999999
No 363
>cd07404 MPP_MS158 Microscilla MS158 and related proteins, metallophosphatase domain. MS158 is an uncharacterized Microscilla protein with a metallophosphatase domain. Microscilla proteins MS152, and MS153 are also included in this family. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is t
Probab=20.01 E-value=1.8e+02 Score=20.21 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=20.9
Q ss_pred HhcCCCEEEeCCCCCCCCCcchhHHHHHHcCCCCcEEe
Q 030626 10 CRKNPRGVLISPGPGAPQDSGISLQTVLELGPTVPLFG 47 (174)
Q Consensus 10 ~~~~~dgiii~GG~~~~~~~~~~~~~i~~~~~~~PilG 47 (174)
...++|.|+++|--.+..................|++.
T Consensus 23 ~~~~~d~li~~GDi~~~~~~~~~~~~~~~~~~~~~v~~ 60 (166)
T cd07404 23 IAPDADILVLAGDIGYLTDAPRFAPLLLALKGFEPVIY 60 (166)
T ss_pred CCCCCCEEEECCCCCCCcchHHHHHHHHhhcCCccEEE
Confidence 34579999999876654433332222222344566654
Done!