BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>030628
MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI
AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL
VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR

High Scoring Gene Products

Symbol, full name Information P value
CJD1
Chloroplast J-like domain 1 		protein from Arabidopsis thaliana 5.5e-61

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  030628
        (174 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2025660 - symbol:CJD1 "Chloroplast J-like doma...   624  5.5e-61   1


>TAIR|locus:2025660 [details] [associations]
            symbol:CJD1 "Chloroplast J-like domain 1" species:3702
            "Arabidopsis thaliana" [GO:0009507 "chloroplast" evidence=ISM;IDA]
            [GO:0009941 "chloroplast envelope" evidence=IDA] [GO:0006631 "fatty
            acid metabolic process" evidence=IMP] [GO:0031969 "chloroplast
            membrane" evidence=IDA] EMBL:CP002684 GO:GO:0006631 GO:GO:0031969
            EMBL:AF370182 EMBL:AY059140 IPI:IPI00517300 RefSeq:NP_563823.1
            UniGene:At.16960 ProteinModelPortal:Q93WG3 SMR:Q93WG3 STRING:Q93WG3
            PRIDE:Q93WG3 EnsemblPlants:AT1G08640.1 GeneID:837386
            KEGG:ath:AT1G08640 TAIR:At1g08640 InParanoid:Q93WG3 OMA:WILIKRN
            PhylomeDB:Q93WG3 ProtClustDB:CLSN2687732 Genevestigator:Q93WG3
            Uniprot:Q93WG3
        Length = 294

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 121/174 (69%), Positives = 141/174 (81%)

Query:     1 MMEQLSKRKKGVTFGSFKVSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWI 60
             M  QL  RKKGVTFGSFKVSK+IK+ADKQPI PWGPRF++SS  D+ INLAIS  F+AWI
Sbjct:   121 MYAQLMNRKKGVTFGSFKVSKDIKYADKQPIIPWGPRFSRSSKNDMLINLAISVVFSAWI 180

Query:    61 AIKRYAEYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLLRCLAL 120
             AIKR  EYKPLQF++F FVYR FEKLKSFE   SP Y EEG++ GR LRMGKRLLR L+L
Sbjct:   181 AIKRNVEYKPLQFMSFVFVYRIFEKLKSFEAPSSPIYNEEGEESGRGLRMGKRLLRSLSL 240

Query:   121 VFGVIAVSSLAYTGILNLIEYAGGFIPAFLFDNQELIVTGSSAVLLFIMASYYR 174
             VFG I ++SLAYTG LN IEY G  IP  L++NQELIVT SSA +L+++AS+YR
Sbjct:   241 VFGSILLASLAYTGFLNGIEYMGYSIPMVLYNNQELIVTASSAFMLYVIASFYR 294


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.140   0.415    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      174       174   0.00075  109 3  11 22  0.47    31
                                                     31  0.49    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  560 (60 KB)
  Total size of DFA:  133 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.30u 0.18s 15.48t   Elapsed:  00:00:00
  Total cpu time:  15.30u 0.18s 15.48t   Elapsed:  00:00:00
  Start:  Sat May 11 08:14:51 2013   End:  Sat May 11 08:14:51 2013

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