BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030628
         (174 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|C5CA18|NRDR_MICLC Transcriptional repressor NrdR OS=Micrococcus luteus (strain ATCC
           4698 / DSM 20030 / JCM 1464 / NBRC 3333 / NCIMB 9278 /
           NCTC 2665 / VKM Ac-2230) GN=nrdR PE=3 SV=1
          Length = 164

 Score = 37.7 bits (86), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 21/34 (61%)

Query: 73  FLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGR 106
           FL FA VYR FE L  FE A++     +GDD GR
Sbjct: 121 FLRFASVYRDFESLDDFEEAIAELRAGDGDDRGR 154


>sp|B9JKQ7|ATKA_AGRRK Potassium-transporting ATPase A chain OS=Agrobacterium radiobacter
           (strain K84 / ATCC BAA-868) GN=kdpA PE=3 SV=1
          Length = 567

 Score = 31.2 bits (69), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 6/88 (6%)

Query: 90  EPAVSPTYTEEGDDDGRALRMGKRLLRCLALVFGVIAVSSLAYTGILNLIEYAGGFIPAF 149
            P V     + G+ +G+ +R G  +    A++    A S  A  G+L      GG IP  
Sbjct: 310 NPLVHALGVQGGNMEGKEVRFGITMSSLFAVI--TTAASCGAVNGMLGSFTAIGGMIPLI 367

Query: 150 LFDNQELIVTGSSA----VLLFIMASYY 173
                E+IV G  A    +L+F++ + +
Sbjct: 368 NLQLGEVIVGGVGAGFYGILMFVIIAIF 395


>sp|Q2GKB1|THIC_ANAPZ Phosphomethylpyrimidine synthase OS=Anaplasma phagocytophilum
           (strain HZ) GN=thiC PE=3 SV=1
          Length = 557

 Score = 31.2 bits (69), Expect = 3.8,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 22/58 (37%)

Query: 19  VSKEIKFADKQPIFPWGPRFAKSSPQDIRINLAISAAFTAWIAIKRYAEYKPLQFLAF 76
           V K++ F D+ P +  GP     +P    I  AI AA   W          P + L  
Sbjct: 405 VKKQLDFCDEAPFYTLGPLTTDIAPGYDHITSAIGAAMIGWYGTAMLCYVTPKEHLGL 462


>sp|C5BWL5|NRDR_BEUC1 Transcriptional repressor NrdR OS=Beutenbergia cavernae (strain
           ATCC BAA-8 / DSM 12333 / NBRC 16432) GN=nrdR PE=3 SV=1
          Length = 170

 Score = 30.4 bits (67), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 3/41 (7%)

Query: 67  EYKPLQFLAFAFVYRFFEKLKSFEPAVSPTYTE---EGDDD 104
           E   + +L FA VYR F  L+ FE A++    E   EGD D
Sbjct: 115 ELDEVAYLRFASVYRGFSSLEDFEAAITALRAERENEGDPD 155


>sp|Q82KE1|NRDR_STRAW Transcriptional repressor NrdR OS=Streptomyces avermitilis (strain
           ATCC 31267 / DSM 46492 / JCM 5070 / NCIMB 12804 / NRRL
           8165 / MA-4680) GN=nrdR PE=3 SV=1
          Length = 187

 Score = 30.4 bits (67), Expect = 6.8,   Method: Compositional matrix adjust.
 Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 9/48 (18%)

Query: 73  FLAFAFVYRFFEKLKSFEPAVS---------PTYTEEGDDDGRALRMG 111
           +L FA VYR F+ L+ FE A++         P   +E  +D  A R G
Sbjct: 121 YLRFASVYRAFDSLEDFEAAIAELREEQRERPAVDDEDHEDAGAERQG 168


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.326    0.140    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,218,332
Number of Sequences: 539616
Number of extensions: 2322368
Number of successful extensions: 6476
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 6474
Number of HSP's gapped (non-prelim): 7
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 57 (26.6 bits)