Query 030628
Match_columns 174
No_of_seqs 21 out of 23
Neff 3.0
Searched_HMMs 13730
Date Tue Mar 26 18:33:14 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/030628.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_2328-2331//hhsearch_scop/030628hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pa4a_ d.52.7.1 (A:) Ribosome 8.9 36 0.0027 12.8 0.2 23 8-32 24-46 (96)
2 d2csba3 a.60.2.4 (A:410-464) T 8.7 46 0.0034 12.2 0.7 17 104-120 8-24 (55)
3 d1josa_ d.52.7.1 (A:) Ribosome 7.1 58 0.0042 11.6 0.6 27 8-36 25-52 (100)
4 d2hkua2 a.121.1.1 (A:88-208) P 3.3 1.2E+02 0.0087 9.7 0.7 36 117-152 83-120 (121)
5 d1v54d_ f.23.1.1 (D:) Mitochon 3.3 1.2E+02 0.0087 9.7 2.8 38 72-115 84-121 (144)
6 d2q1ma1 b.22.1.1 (A:57-172) Gl 3.0 1.3E+02 0.0096 9.4 1.2 18 13-32 41-58 (116)
7 d1kkga_ d.52.7.1 (A:) Ribosome 2.9 1.4E+02 0.0099 9.3 1.6 23 8-32 31-54 (108)
8 d2dyja1 d.52.7.1 (A:4-94) Ribo 2.9 1.4E+02 0.01 9.3 1.0 20 8-27 24-43 (91)
9 d1vcla3 d.281.1.1 (A:284-432) 2.8 1.4E+02 0.01 9.2 0.6 20 6-25 45-64 (149)
10 d3pmga4 d.129.2.1 (A:421-561) 2.8 1.4E+02 0.01 9.2 0.9 27 1-27 20-57 (141)
No 1
>d1pa4a_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Mycoplasma pneumoniae [TaxId: 2104]}
Probab=8.87 E-value=36 Score=12.79 Aligned_cols=23 Identities=13% Similarity=0.091 Sum_probs=18.7
Q ss_pred HHCCCCCCCEEEEHHHCCCCCCCCC
Q ss_conf 4227643440220000011688876
Q 030628 8 RKKGVTFGSFKVSKEIKFADKQPIF 32 (174)
Q Consensus 8 RkkG~t~Gs~~VsKdikYADkqp~~ 32 (174)
|.+++|--.|+||+|.++|. .++
T Consensus 24 ~l~~vtIt~V~vS~Dl~~Ak--Vy~ 46 (96)
T d1pa4a_ 24 TVKTGHVTHVKLSDDLLHVT--VYL 46 (96)
T ss_dssp CHHHHCCSCCEEETTTTEEE--ECC
T ss_pred CCCCEEEEEEEECCCCCEEE--EEE
T ss_conf 66815897999779976799--999
No 2
>d2csba3 a.60.2.4 (A:410-464) Topoisomerase V {Methanopyrus kandleri [TaxId: 2320]}
Probab=8.70 E-value=46 Score=12.17 Aligned_cols=17 Identities=29% Similarity=0.526 Sum_probs=10.8
Q ss_pred CHHHHHHHHHHHHHHHH
Q ss_conf 24665455789999899
Q 030628 104 DGRALRMGKRLLRCLAL 120 (174)
Q Consensus 104 ~gr~~r~~KR~lRsl~L 120 (174)
||-+.+...|++|+||-
T Consensus 8 egvgrktaerllrafgn 24 (55)
T d2csba3 8 EGVGRKTAERLLRAFGN 24 (55)
T ss_dssp TTCCHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHCC
T ss_conf 05247689999998199
No 3
>d1josa_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Haemophilus influenzae [TaxId: 727]}
Probab=7.10 E-value=58 Score=11.57 Aligned_cols=27 Identities=22% Similarity=0.170 Sum_probs=19.8
Q ss_pred HHCCCCCCCEEEEHHHCCCCCCCCC-CCCC
Q ss_conf 4227643440220000011688876-5787
Q 030628 8 RKKGVTFGSFKVSKEIKFADKQPIF-PWGP 36 (174)
Q Consensus 8 RkkG~t~Gs~~VsKdikYADkqp~~-PW~P 36 (174)
|..++|.-.|++|+|.++|. .++ ..++
T Consensus 25 ~l~~vtIt~V~~S~Dl~~A~--Vy~s~~~~ 52 (100)
T d1josa_ 25 RIGMVTVSDVEVSSDLSYAK--IFVTFLFD 52 (100)
T ss_dssp TTCCEEEEEEEECTTSCEEE--EEEEESCC
T ss_pred CCCCEEEEEEEECCCCCEEE--EEEEECCC
T ss_conf 66805898999769834279--99996576
No 4
>d2hkua2 a.121.1.1 (A:88-208) Putative transcriptional regulator RHA1_ro03468 {Rhodococcus sp. RHA1 [TaxId: 101510]}
Probab=3.27 E-value=1.2e+02 Score=9.70 Aligned_cols=36 Identities=22% Similarity=0.217 Sum_probs=26.2
Q ss_pred HHHHHHHHHHH-HHHHHHHHHH-HHHHHCCCCCHHEEC
Q ss_conf 98999999999-7666876989-999827533120021
Q 030628 117 CLALVFGVIAV-SSLAYTGILN-LIEYAGGFIPAFLFD 152 (174)
Q Consensus 117 sl~LvfG~~~v-~sL~yT~~ln-~ie~~g~~iP~~~y~ 152 (174)
.||+|+--.+. .|.+|..-.. -+-+..++||-.+.|
T Consensus 83 afG~Vlq~~a~g~sfgysle~avavif~~lqip~~v~~ 120 (121)
T d2hkua2 83 IFGLVIQKTATGESFGYSLEEAVAVIFANLQIPETVRN 120 (121)
T ss_dssp HHHHHHHHHHTTSCTTCSHHHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHC
T ss_conf 99999984421320044399999999970568477605
No 5
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.25 E-value=1.2e+02 Score=9.68 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 89999999999989651489999899998987246654557899
Q 030628 72 QFLAFAFVYRFFEKLKSFEPAVSPTYTEEGDDDGRALRMGKRLL 115 (174)
Q Consensus 72 ~f~af~~v~r~f~KL~~~ePp~~~~~~e~ge~~gr~~r~~KR~l 115 (174)
+|+++....-++++.....|+|.+. +++ ....+.+|.+
T Consensus 84 ~~i~~s~~i~~~~r~~v~p~~P~T~-~~E-----wqeaq~erm~ 121 (144)
T d1v54d_ 84 FFIGFTALLLIWEKHYVYGPIPHTF-EEE-----WVAKQTKRML 121 (144)
T ss_dssp HHHHHHHHHHHHHHHHTCCCCCGGG-SHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCCC-CHH-----HHHHHHHHHH
T ss_conf 9999999999999997079999888-999-----9999999999
No 6
>d2q1ma1 b.22.1.1 (A:57-172) Glucocorticoid-induced TNF-related ligand, TNFSF18 {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.01 E-value=1.3e+02 Score=9.43 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=14.8
Q ss_pred CCCCEEEEHHHCCCCCCCCC
Q ss_conf 43440220000011688876
Q 030628 13 TFGSFKVSKEIKFADKQPIF 32 (174)
Q Consensus 13 t~Gs~~VsKdikYADkqp~~ 32 (174)
-|| +|--|-+|.|++|..
T Consensus 41 IYG--QV~Pn~~Yk~~APF~ 58 (116)
T d2q1ma1 41 IYG--QVAPNANYNDVAPFE 58 (116)
T ss_dssp EEE--EECBCTTCCSSSCCC
T ss_pred EEE--EECCCCCCCCCCCEE
T ss_conf 987--775784447789869
No 7
>d1kkga_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Escherichia coli [TaxId: 562]}
Probab=2.93 E-value=1.4e+02 Score=9.35 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=17.4
Q ss_pred HHCCC-CCCCEEEEHHHCCCCCCCCC
Q ss_conf 42276-43440220000011688876
Q 030628 8 RKKGV-TFGSFKVSKEIKFADKQPIF 32 (174)
Q Consensus 8 RkkG~-t~Gs~~VsKdikYADkqp~~ 32 (174)
|+.++ |.-.|.||+|-++|. .++
T Consensus 31 ~l~~~vtIt~V~vS~Dl~~Ak--Vyv 54 (108)
T d1kkga_ 31 RLGMMTTVSGVEMSRDLAYAK--VYV 54 (108)
T ss_dssp GGTSCCBCSCEEEETTTTEEE--EEE
T ss_pred CCCCEEEEEEEEECCCCCEEE--EEE
T ss_conf 557706994899768813189--999
No 8
>d2dyja1 d.52.7.1 (A:4-94) Ribosome-binding factor A, RbfA {Thermus thermophilus [TaxId: 274]}
Probab=2.90 E-value=1.4e+02 Score=9.32 Aligned_cols=20 Identities=20% Similarity=0.124 Sum_probs=16.1
Q ss_pred HHCCCCCCCEEEEHHHCCCC
Q ss_conf 42276434402200000116
Q 030628 8 RKKGVTFGSFKVSKEIKFAD 27 (174)
Q Consensus 8 RkkG~t~Gs~~VsKdikYAD 27 (174)
|...+|.-.|++|+|-++|.
T Consensus 24 ~~~~vtIt~V~~S~Dl~~ak 43 (91)
T d2dyja1 24 RLFLLTVEAVRLSKDGSVLS 43 (91)
T ss_dssp GGTTCEEEEEEECTTSSEEE
T ss_pred CCCCEEEEEEEECCCCCCEE
T ss_conf 65945997999889800379
No 9
>d1vcla3 d.281.1.1 (A:284-432) Hemolytic lectin CEL-III, C-terminal domain {Cucumaria echinata [TaxId: 40245]}
Probab=2.80 E-value=1.4e+02 Score=9.20 Aligned_cols=20 Identities=35% Similarity=0.419 Sum_probs=12.2
Q ss_pred HHHHCCCCCCCEEEEHHHCC
Q ss_conf 44422764344022000001
Q 030628 6 SKRKKGVTFGSFKVSKEIKF 25 (174)
Q Consensus 6 s~RkkG~t~Gs~~VsKdikY 25 (174)
++--+|+-|||+.+|..+.|
T Consensus 45 saie~~~lf~~~sls~~~~~ 64 (149)
T d1vcla3 45 STIEKGVIFAKATVSVKVTA 64 (149)
T ss_dssp HHHHHCCEETTEECCHHHHH
T ss_pred EEEECCEEEEEEEEEEEEHH
T ss_conf 10011326888998765203
No 10
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=2.79 E-value=1.4e+02 Score=9.19 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=15.0
Q ss_pred CHHHHHHHH-----CCCCCCC------EEEEHHHCCCC
Q ss_conf 934544442-----2764344------02200000116
Q 030628 1 MMEQLSKRK-----KGVTFGS------FKVSKEIKFAD 27 (174)
Q Consensus 1 MmaQLs~Rk-----kG~t~Gs------~~VsKdikYAD 27 (174)
||+.|.+.+ .|..|++ |+..-|-.|-|
T Consensus 20 ~m~~L~~~~~~~~l~G~~~~~~~~~~~v~~aDdFsYtD 57 (141)
T d3pmga4 20 MMKDLEALMFDRSFVGKQFSANDKVYTVEKADNFEYHD 57 (141)
T ss_dssp HHHHHHHHHHSTTSTTCEEEETTEEEEEEEEEECCEEC
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCEEECC
T ss_conf 99999987237344887546788505898657425559
Done!