BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030629
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QQY|A Chain A, Crystal Structure Of A Novel Laglidadg Homing
Endonuclease, I-Onui (From Ophiostoma Novo-Ulmi Subsp.
Americana)
Length = 307
Score = 29.6 bits (65), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 23/96 (23%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 22 MEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHLQANDSQKLIWN 81
+ DE+++ F + K + ++ + +++ F +G E F +L + S+
Sbjct: 146 LTDELKKAFPEIISKERSLINKNIPNFKWLAGFTSG-----EGCFFVNLIKSKSKL---- 196
Query: 82 GSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMEN 117
G +V F T++ KD N +N G G+IK +N
Sbjct: 197 GVQVQLVFSITQHIKDKNLMNSLITYLGCGYIKEKN 232
>pdb|2W3J|A Chain A, Structure Of A Family 35 Carbohydrate Binding Module From
An Environmental Isolate
Length = 145
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 14/23 (60%)
Query: 102 NKDHHTTGTGFIKMENANGKSFI 124
NK TGTGFI ENA G S +
Sbjct: 20 NKHAGYTGTGFIDTENAVGASIV 42
>pdb|3LAG|A Chain A, The Crystal Structure Of A Functionally Unknown Protein
Rpa4178 From Rhodopseudomonas Palustris Cga009
pdb|3LAG|B Chain B, The Crystal Structure Of A Functionally Unknown Protein
Rpa4178 From Rhodopseudomonas Palustris Cga009
Length = 98
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 10/25 (40%), Positives = 16/25 (64%)
Query: 105 HHTTGTGFIKMENANGKSFILAPDN 129
HHT G ++ + A+G+ I+APD
Sbjct: 32 HHTHGXDYVVVPXADGEXTIVAPDG 56
>pdb|1XAG|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAH|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAH|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+
And Nad+
pdb|1XAI|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAI|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAJ|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-Dehydroquinate Synthase (Dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate
pdb|1XAL|A Chain A, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
pdb|1XAL|B Chain B, Crystal Structure Of Staphlyococcus Aureus
3-dehydroquinate Synthase (dhqs) In Complex With Zn2+,
Nad+ And Carbaphosphonate (soak)
Length = 354
Score = 26.6 bits (57), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 40/114 (35%), Gaps = 27/114 (23%)
Query: 45 DYSSQYVDAFANGSDSNQEYSQFQHLQANDSQKLIWNGSEVTEEFQETEYYKDLNRINKD 104
+Y +QY FAN D Y + K+I E T+ F++ Y + L I
Sbjct: 40 EYVNQY---FANKFDDILSYE--------NVHKVIIPAGEKTKTFEQ--YQETLEYILSH 86
Query: 105 HHTTGT--------------GFIKMENANGKSFILAPDNDDAHHSSCKGNPATN 144
H T T GF+ G FI P AH SS G N
Sbjct: 87 HVTRNTAIIAVGGGATGDFAGFVAATLLRGVHFIQVPTTILAHDSSVGGKVGIN 140
>pdb|1HN0|A Chain A, Crystal Structure Of Chondroitin Abc Lyase I From Proteus
Vulgaris At 1.9 Angstroms Resolution
Length = 1021
Score = 26.2 bits (56), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 22/112 (19%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHLQ 71
V++SR+ + E++ R+ P ++SS ++D D++ EY F L
Sbjct: 835 VNVSRQHQVSAENKNRQ------------PTEGNFSSAWIDHSTRPKDASYEYMVF--LD 880
Query: 72 ANDSQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMENANGKSF 123
A + E+ ++F+E + R +KD H K+ N G +F
Sbjct: 881 ATPEKM-----GEMAQKFRENNGLYQVLRKDKDVHII---LDKLSNVTGYAF 924
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.309 0.125 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,476,457
Number of Sequences: 62578
Number of extensions: 222967
Number of successful extensions: 394
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 391
Number of HSP's gapped (non-prelim): 15
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 48 (23.1 bits)