BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030629
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9P3A9|YIL5_SCHPO Uncharacterized protein C1565.05 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPAC1565.05 PE=4 SV=1
Length = 773
Score = 33.1 bits (74), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 8/86 (9%)
Query: 70 LQANDSQK-LIWNGSEVTEEFQETEYYKDLN--RINKDHHTTGTGFIKMENANGKSFILA 126
L++N K L+W +++ EE + Y+D++ +I H + TG + + NGK L
Sbjct: 95 LKSNGEWKILLWKFNDLEEESEVV--YRDISNQQIFALHFISSTGQLVIVFRNGKIAFLD 152
Query: 127 PDNDDAHHSSCKGNPAT---NEWIPS 149
P++D H S+ AT + ++PS
Sbjct: 153 PEDDKVHMSASVNESATLLQSMYVPS 178
>sp|P0CL10|PDHR_SALTY Pyruvate dehydrogenase complex repressor OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=pdhR PE=3 SV=1
Length = 254
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
+HL R E + VR+NFE L +R P S + ++ +A G + +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAREASHRHL 225
>sp|E1W823|PDHR_SALTS Pyruvate dehydrogenase complex repressor OS=Salmonella typhimurium
(strain SL1344) GN=pdhR PE=3 SV=1
Length = 254
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
+HL R E + VR+NFE L +R P S + ++ +A G + +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAREASHRHL 225
>sp|P0A2S3|PDHR_SALTI Pyruvate dehydrogenase complex repressor OS=Salmonella typhi
GN=pdhR PE=3 SV=1
Length = 254
Score = 30.4 bits (67), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
+HL R E + VR+NFE L +R P S + ++ +A G + +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYARREMLPLVSTHRTRIFEAIMAGKPEEAREASHRHL 225
>sp|Q83IQ8|MDTO_SHIFL Multidrug resistance protein MdtO OS=Shigella flexneri GN=mdtO PE=3
SV=5
Length = 680
Score = 30.4 bits (67), Expect = 5.5, Method: Composition-based stats.
Identities = 28/148 (18%), Positives = 55/148 (37%), Gaps = 21/148 (14%)
Query: 7 PDRSDVHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQ 66
P+R+ + + +++D + ++LAP T+ +R + Q ++ F D+N
Sbjct: 176 PNRAITQMHQALNDRLDDAISHLTDSLAPLPETRIEREALALQKLNVFCLADDANWR--- 232
Query: 67 FQHLQANDSQKLIWNGSEVTEEFQETEYYKDLNRINKDHHTTGTGFIKMENANGKSFILA 126
+Q W T T Y LNR + I+ LA
Sbjct: 233 --------TQSAWWQSCVAT----VTYIYSTLNRYDPTSFADSQAIIEFRQK------LA 274
Query: 127 PDNDDAHHSSCKGNPATNEWIPSADDSV 154
+ + H+ +G ++W S ++V
Sbjct: 275 SEINKLQHAVAEGQCWQSDWRLSESEAV 302
>sp|P0ACL9|PDHR_ECOLI Pyruvate dehydrogenase complex repressor OS=Escherichia coli
(strain K12) GN=pdhR PE=1 SV=1
Length = 254
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
+HL R E + VR+NFE L +R P S + ++ +A G + +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHL 225
>sp|P0ACM0|PDHR_ECOL6 Pyruvate dehydrogenase complex repressor OS=Escherichia coli O6:H1
(strain CFT073 / ATCC 700928 / UPEC) GN=pdhR PE=3 SV=1
Length = 254
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
+HL R E + VR+NFE L +R P S + ++ +A G + +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHL 225
>sp|P0ACM1|PDHR_ECO57 Pyruvate dehydrogenase complex repressor OS=Escherichia coli
O157:H7 GN=pdhR PE=3 SV=1
Length = 254
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 12 VHLSREEEAKMEDEVRENFENLAPKRHTKPQRSDYSSQYVDAFANGSDSNQEYSQFQHL 70
+HL R E + VR+NFE L +R P S + ++ +A G + +HL
Sbjct: 167 LHLLRCMEPMLAQNVRQNFELLYSRREMLPLVSSHRTRIFEAIMAGKPEEAREASHRHL 225
>sp|P21543|AMYB_PAEPO Beta/alpha-amylase OS=Paenibacillus polymyxa PE=1 SV=1
Length = 1196
Score = 29.6 bits (65), Expect = 9.4, Method: Composition-based stats.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 44 SDYSSQYV-----DAFANGSDSNQEYSQFQHLQANDSQKLIWNGSEVTEEFQETEYYKDL 98
+D+S Q + D F+NG SN Y F +N+S + W+G + + +Y K++
Sbjct: 742 TDWSKQSIYFIMTDRFSNGDPSNDNYGGF---NSNNSDQRKWHGGDFQGIINKLDYIKNM 798
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.381
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 71,637,016
Number of Sequences: 539616
Number of extensions: 3050155
Number of successful extensions: 6689
Number of sequences better than 100.0: 34
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 6677
Number of HSP's gapped (non-prelim): 39
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)