Query 030629
Match_columns 174
No_of_seqs 29 out of 31
Neff 2.8
Searched_HMMs 29240
Date Tue Mar 26 18:17:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/030629.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2332-2336//hhsearch_pdb/030629hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1s0p_A CAP, adenylyl cyclase-a 1.0 1 1 19.8 -1.2 25 88-112 139-165 (176)
2 2a07_F Forkhead box protein P2 1.0 1 1 16.5 -2.3 49 93-142 38-92 (93)
3 3fo3_A Eight-heme nitrite redu 1.0 1 1 16.2 0.1 62 93-154 337-407 (525)
4 2d46_A Calcium channel, voltag 1.0 1 1 15.1 0.1 26 4-29 25-51 (61)
5 1ssf_A Transformation related 1.0 1 1 14.7 -2.3 31 90-123 72-103 (156)
6 3gzu_A Inner capsid protein VP 1.0 1 1 13.9 -0.6 17 142-158 733-749 (800)
7 2lma_A THP5 peptide; CD4+, imm 1.0 1 1 13.8 0.7 13 89-101 4-16 (26)
8 1bb1_B Designed, thermostable 1.0 1 1 13.8 1.6 18 17-34 9-26 (36)
9 3lay_A Zinc resistance-associa 1.0 1 1 13.6 0.3 24 14-37 68-91 (175)
10 3bv4_A Fructose-bisphosphate a 1.0 1 1 13.6 -1.3 29 92-120 6-34 (341)
No 1
>1s0p_A CAP, adenylyl cyclase-associated protein; alpha helix bundle, membrane protein; 1.40A {Dictyostelium discoideum} SCOP: a.192.1.1 PDB: 1tjf_A
Probab=1.00 E-value=1 Score=19.82 Aligned_cols=25 Identities=32% Similarity=0.542 Sum_probs=17.6
Q ss_pred HHHHHH--HHCCCCCCCCCCCCCCCCC
Q ss_conf 124544--2011100235766787521
Q 030629 88 EFQETE--YYKDLNRINKDHHTTGTGF 112 (174)
Q Consensus 88 EFvETe--YYkdL~~IDKqHHTTGtGF 112 (174)
|+|-.= -+++|-.-=|+|||||--+
T Consensus 139 eWvka~~~i~~~L~~YVK~~httGl~W 165 (176)
T 1s0p_A 139 DWVSNYVNFLKDLEKYIKQYHTTGLTW 165 (176)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSTTSCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 999999999999999999868787763
No 2
>2a07_F Forkhead box protein P2; double-helix, swapping, homodimer, monomer, winged-helix, magnesium, transcription/DNA complex; 1.90A {Homo sapiens} SCOP: a.4.5.14 PDB: 2as5_F 2kiu_A 3qrf_F
Probab=1.00 E-value=1 Score=16.50 Aligned_cols=49 Identities=16% Similarity=0.398 Sum_probs=27.5
Q ss_pred HHHCCC-----CCCCCCCCCCCCCCEEEEECCCCEEEEECCCCC-CCCCCCCCCCC
Q ss_conf 420111-----002357667875216876069952587319999-77665446999
Q 030629 93 EYYKDL-----NRINKDHHTTGTGFIKMENANGKSFILAPDNDD-AHHSSCKGNPA 142 (174)
Q Consensus 93 eYYkdL-----~~IDKqHHTTGtGFIKvek~~G~~f~l~~~~~~-~~~~s~ksNPA 142 (174)
.||++- |+|- +.-.....|+||++..|+...|.+.... +.....+++||
T Consensus 38 pyyr~~~~gWkNSIR-HNLSln~~F~kv~~gkG~~W~l~~~~~~k~r~~~~~~~p~ 92 (93)
T 2a07_F 38 AYFRRNAATWKNAVR-HNLSLHKCFVRVENVKGAVWTVDEVEYQKRRSQKITGSPT 92 (93)
T ss_dssp HHHCCCHHHHHHHHH-HHHHHCTTBCCEECSSSEECCBCHHHHHHHC---------
T ss_pred CCCCCCCCCCCCCCC-EEEEHHHCEEECCCCCCCEEEECHHHHHCCCCCCCCCCCC
T ss_conf 740158986442313-0012420003468999973687867861545554558999
No 3
>3fo3_A Eight-heme nitrite reductase; alpha protein, eight hemes C, oxidoreductase; HET: HEC PG6 PG4; 1.40A {Thioalkalivibrio nitratireducens} PDB: 3d1i_A* 3f29_A* 2zo5_A* 3gm6_A* 3lg1_A* 3lgq_A* 3mmo_A* 2ot4_A* 3uu9_A* 3rkh_A* 3sce_A* 3s7w_A* 3owm_A* 3sxq_A* 3ttb_A*
Probab=1.00 E-value=1 Score=16.24 Aligned_cols=62 Identities=18% Similarity=0.267 Sum_probs=40.2
Q ss_pred HHHCCCCCCCCCCCCCCCCCEEEEECCCCEEE--EEC-CCCC--CCCCCC----CCCCCCCCCCCCCCCCC
Q ss_conf 42011100235766787521687606995258--731-9999--776654----46999898756986431
Q 030629 93 EYYKDLNRINKDHHTTGTGFIKMENANGKSFI--LAP-DNDD--AHHSSC----KGNPATNEWIPSADDSV 154 (174)
Q Consensus 93 eYYkdL~~IDKqHHTTGtGFIKvek~~G~~f~--l~~-~~~~--~~~~s~----ksNPATNDWiPa~~~~~ 154 (174)
+||++++-.|=.|..||+..||+--+.=..|. +.. .+.+ .||-.. .+..-|+-||-+|-.++
T Consensus 337 ~yyd~~~f~dw~h~~sg~~~~k~qHpe~E~~~~~~H~~~GvsC~DCHMP~~~~~~g~~~tdH~~~sPl~~~ 407 (525)
T 3fo3_A 337 EAAQEIDFFDFRHATTGAALPKLQHPEAETFWGSVHERNGVACADCHMPKVQLENGKVYTSHSQRTPRDMM 407 (525)
T ss_dssp HHHHHTTCBCEECTTTCCEECCCCCCHHHHHTTSHHHHTTCCHHHHHSCBCCCSSSCCCBCCCCCCGGGCT
T ss_pred HHHHCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCEECCCCCCCCCCCH
T ss_conf 99741597746576778870004587710045773556898561007874674899632157678886532
No 4
>2d46_A Calcium channel, voltage-dependent, beta 4 subunit isoform A; Ca2+ channel, BETA4A subunit, nuclear magnetic resonance, alternative spliving; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=15.06 Aligned_cols=26 Identities=35% Similarity=0.524 Sum_probs=15.8
Q ss_pred CCCCCCCCCCCCHH-HHHHHHHHHHHH
Q ss_conf 78999986688999-999999999986
Q 030629 4 VRRPDRSDVHLSRE-EEAKMEDEVREN 29 (174)
Q Consensus 4 ~~rPsRSD~~L~~E-eq~~ie~evRa~ 29 (174)
..||+-||..|+-+ |.+|.|.|-.|.
T Consensus 25 ~srpSdSD~SldEdrE~~RrE~ErqA~ 51 (61)
T 2d46_A 25 TSRPSDSDVSLEEDREAIRQEREQQAA 51 (61)
T ss_dssp CSSSCCCEECGGGCCTTTHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 788776646343305788889999999
No 5
>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1
Probab=1.00 E-value=1 Score=14.70 Aligned_cols=31 Identities=23% Similarity=0.396 Sum_probs=18.7
Q ss_pred HHHHHHCCCCCCCCCCCC-CCCCCEEEEECCCCEE
Q ss_conf 454420111002357667-8752168760699525
Q 030629 90 QETEYYKDLNRINKDHHT-TGTGFIKMENANGKSF 123 (174)
Q Consensus 90 vETeYYkdL~~IDKqHHT-TGtGFIKvek~~G~~f 123 (174)
.|-+||..=+-+ -|-+ +|...+.|++ .|..-
T Consensus 72 ~~ddy~s~giI~--~h~~~~~e~~Y~Ve~-~G~t~ 103 (156)
T 1ssf_A 72 SEDEYFSAGVVK--GHRKESGELYYSIEK-EGQRK 103 (156)
T ss_dssp SCTTTCEEEEEE--EEEEETTEEEEEEEE-TTEEE
T ss_pred CCCCCCCCCEEE--EECCCCCCEEEEEEE-CCCEE
T ss_conf 278420311899--312778817899996-79479
No 6
>3gzu_A Inner capsid protein VP2; 7RP, DLP, metal- binding, virion, zinc, core protein, RNA-binding, icosaderal virus; 3.80A {Rotavirus A} PDB: 3kz4_A 4f5x_A 3n09_A
Probab=1.00 E-value=1 Score=13.90 Aligned_cols=17 Identities=24% Similarity=0.659 Sum_probs=13.4
Q ss_pred CCCCCCCCCCCCCEEEE
Q ss_conf 98987569864312343
Q 030629 142 ATNEWIPSADDSVLQLQ 158 (174)
Q Consensus 142 ATNDWiPa~~~~~~~~~ 158 (174)
|-|+|+|.+.+.|..++
T Consensus 733 ~N~~W~PTstt~VyK~~ 749 (800)
T 3gzu_A 733 ANYDWVPTSTTKVYKQV 749 (800)
T ss_dssp HHHCCCCCBSCCEECCC
T ss_pred ECCCCCCCCCHHHHHHC
T ss_conf 62775746648998717
No 7
>2lma_A THP5 peptide; CD4+, immune system; NMR {Synthetic}
Probab=1.00 E-value=1 Score=13.77 Aligned_cols=13 Identities=38% Similarity=0.764 Sum_probs=0.0
Q ss_pred HHHHHHHCCCCCC
Q ss_conf 2454420111002
Q 030629 89 FQETEYYKDLNRI 101 (174)
Q Consensus 89 FvETeYYkdL~~I 101 (174)
|..||||.-+.-|
T Consensus 4 ylqteyydvmtvi 16 (26)
T 2lma_A 4 YLQTEYYDVMTVI 16 (26)
T ss_dssp THHHHHHTTSTTS
T ss_pred CCCCEEEEEEEEE
T ss_conf 3121335468885
No 8
>1bb1_B Designed, thermostable heterotrimeric coiled coil; de novo protein design; 1.80A {Synthetic construct} SCOP: k.7.1.1
Probab=1.00 E-value=1 Score=13.76 Aligned_cols=18 Identities=39% Similarity=0.584 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHCC
Q ss_conf 999999999998643139
Q 030629 17 EEEAKMEDEVRENFENLA 34 (174)
Q Consensus 17 Eeq~~ie~evRa~FD~~A 34 (174)
|||+.|+++|.+--+.+|
T Consensus 9 eeqaaieeeiqaikeeia 26 (36)
T 1bb1_B 9 EEQAAIEEEIQAIKEEIA 26 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
T ss_conf 888889999999999999
No 9
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=1.00 E-value=1 Score=13.63 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 899999999999998643139999
Q 030629 14 LSREEEAKMEDEVRENFENLAPKR 37 (174)
Q Consensus 14 L~~Eeq~~ie~evRa~FD~~APKR 37 (174)
|++||++++.+-..+|+....+.|
T Consensus 68 LT~EQq~ql~~I~~e~r~~~~~Lr 91 (175)
T 3lay_A 68 LTTEQQATAQKIYDDYYTQTSALR 91 (175)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999999999999999999
No 10
>3bv4_A Fructose-bisphosphate aldolase A; lyase, acetylation, glycolysis, phosphoprotein, schiff base; HET: 13P; 1.70A {Oryctolagus cuniculus} PDB: 1ado_A* 1ewd_A 1zai_A* 1zah_A* 1zaj_A* 1zal_A 2ot0_A 2ot1_A* 2qut_A 2quv_A 3lge_A 3tu9_A* 3b8d_A 6ald_A* 1ex5_A 1ewe_A 2quu_A 3dfn_A 3dfo_A 3dfp_A ...
Probab=1.00 E-value=1 Score=13.63 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=0.0
Q ss_pred HHHHCCCCCCCCCCCCCCCCCEEEEECCC
Q ss_conf 44201110023576678752168760699
Q 030629 92 TEYYKDLNRINKDHHTTGTGFIKMENANG 120 (174)
Q Consensus 92 TeYYkdL~~IDKqHHTTGtGFIKvek~~G 120 (174)
.+|-++|..|-+.--..|.|||-++-.+|
T Consensus 6 ~~~~~eL~~~a~~i~a~GKGiLAADES~g 34 (341)
T 3bv4_A 6 PEQKKELSDIAHRIVAPGKGILAADESTG 34 (341)
T ss_dssp HHHHHHHHHHHHHHTCTTCEEEEECCCHH
T ss_pred HHHHHHHHHHHHHHHCCCCCEEEECCCCC
T ss_conf 78999999999998178983687457887
Done!