BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030632
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9QZH3|PPIE_MOUSE Peptidyl-prolyl cis-trans isomerase E OS=Mus musculus GN=Ppie PE=2
SV=2
Length = 301
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 78/109 (71%), Gaps = 5/109 (4%)
Query: 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63
+A K LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD T+KHR F FV F EDA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 64 IQAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
A+DNM+ +EL+GR + VN A P RIK G +++P+W+D D W ++
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104
>sp|Q5R723|PPIE_PONAB Peptidyl-prolyl cis-trans isomerase E OS=Pongo abelii GN=PPIE PE=2
SV=1
Length = 301
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 78/109 (71%), Gaps = 5/109 (4%)
Query: 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63
+A K LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD T+KHR F FV F EDA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 64 IQAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
A+DNM+ +EL+GR + VN A P RIK G +++P+W+D D W ++
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104
>sp|Q9UNP9|PPIE_HUMAN Peptidyl-prolyl cis-trans isomerase E OS=Homo sapiens GN=PPIE PE=1
SV=1
Length = 301
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 78/109 (71%), Gaps = 5/109 (4%)
Query: 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63
+A K LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD T+KHR F FV F EDA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 64 IQAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
A+DNM+ +EL+GR + VN A P RIK G +++P+W+D D W ++
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104
>sp|A4FV72|PPIE_BOVIN Peptidyl-prolyl cis-trans isomerase E OS=Bos taurus GN=PPIE PE=2
SV=1
Length = 301
Score = 123 bits (309), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 59/109 (54%), Positives = 78/109 (71%), Gaps = 5/109 (4%)
Query: 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63
+A K LYVGGLAEEV++ +LHAAFIPFGDI D++ PLD T+KHR F FV F EDA
Sbjct: 1 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDA 60
Query: 64 IQAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFER 112
A+DNM+ +EL+GR + VN A P RIK G +++P+W+D D W ++
Sbjct: 61 AAAIDNMNESELFGRTIRVNLAKPMRIKEG----SSRPVWSD-DDWLKK 104
>sp|Q9V3G3|PPIE_DROME Peptidyl-prolyl cis-trans isomerase E OS=Drosophila melanogaster
GN=cyp33 PE=1 SV=1
Length = 300
Score = 109 bits (273), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/106 (50%), Positives = 73/106 (68%), Gaps = 5/106 (4%)
Query: 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAM 67
K T+YVGGLA+EV E +L+ AFIPFGDI D++ P D +Q+HR F F+ + + EDA A+
Sbjct: 5 KRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAAAI 64
Query: 68 DNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQ 113
DNM+ +EL GR + VN A P R+K E + +PIWAD D W ++
Sbjct: 65 DNMNDSELCGRTIRVNLAKPVRVK--EDSF--KPIWAD-DDWLQKH 105
>sp|P0C1I2|PPIE_RHIO9 Peptidyl-prolyl cis-trans isomerase E OS=Rhizopus delemar (strain
RA 99-880 / ATCC MYA-4621 / FGSC 9543 / NRRL 43880)
GN=cyp10 PE=3 SV=1
Length = 315
Score = 86.7 bits (213), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 57/180 (31%), Positives = 94/180 (52%), Gaps = 18/180 (10%)
Query: 1 MANLAVQKN---TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQ---ATQKHRSFGF 54
M ++ + KN TLY+ GL ++VNEA+LHAAFIPFG+I V+ D + HR FGF
Sbjct: 1 MPSVNITKNNKTTLYISGLDQQVNEAVLHAAFIPFGEIIAVQMATDTEIDSNNIHRGFGF 60
Query: 55 VTFLEKEDAIQAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQ 114
V + ED AMDNM +ELYG+V+ V A + + + +W D ++W ++
Sbjct: 61 VEYELAEDCQAAMDNMHLSELYGKVIKVQLAKTINV----TTTSNRAVWTD-ESWLQKYG 115
Query: 115 QEEEMQRLQAE----NRAAMQAAEELHRKKMAEDREGEKEE---DSEMKDDPMARAEAEV 167
E+++ Q + N+ +E+ + ++ G+K D ++ + R E E+
Sbjct: 116 NVEDVEEKQEDEKENNQETTSEKKEVSSYIPSSEKRGKKSRVYLDIQIGNTLAGRIEIEL 175
>sp|Q9FNR1|RBG3_ARATH Glycine-rich RNA-binding protein 3, mitochondrial OS=Arabidopsis
thaliana GN=RBG3 PE=2 SV=1
Length = 309
Score = 73.9 bits (180), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/81 (40%), Positives = 51/81 (62%)
Query: 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAI 64
+ + L++GG+A ++E L AF +G++ D + LD+ T + R FGFVTF E A
Sbjct: 36 CMSSSKLFIGGMAYSMDEDSLREAFTKYGEVVDTRVILDRETGRSRGFGFVTFTSSEAAS 95
Query: 65 QAMDNMDGAELYGRVLTVNYA 85
A+ +DG +L+GRV+ VNYA
Sbjct: 96 SAIQALDGRDLHGRVVKVNYA 116
>sp|Q26548|PPIE_SCHMA Peptidyl-prolyl cis-trans isomerase E OS=Schistosoma mansoni PE=1
SV=2
Length = 273
Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 51/72 (70%), Gaps = 5/72 (6%)
Query: 41 PLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQ 100
P+D T+KHR F FV F E EDA+ A+DNM+ +E++GR + VN A P RI+ +GW ++
Sbjct: 2 PMDYQTEKHRGFAFVEFEEVEDAMSAIDNMNESEIFGRTIRVNVARPVRIR---EGW-SR 57
Query: 101 PIWADADTWFER 112
P+W+D + W ++
Sbjct: 58 PVWSD-ENWLKK 68
>sp|Q99070|GRP2_SORBI Glycine-rich RNA-binding protein 2 OS=Sorghum bicolor GN=GRP2
PE=2 SV=1
Length = 168
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 45/75 (60%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
+VGGLA N L AF FG + D K D+ T + R FGFVTF ++ + A++NM
Sbjct: 10 CFVGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENM 69
Query: 71 DGAELYGRVLTVNYA 85
+G EL GR +TVN A
Sbjct: 70 NGKELDGRNITVNQA 84
>sp|Q03878|GRP1_DAUCA Glycine-rich RNA-binding protein OS=Daucus carota PE=2 SV=1
Length = 157
Score = 67.0 bits (162), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/75 (46%), Positives = 46/75 (61%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
+VGGLA N+ L AF FGDI D K D+ T + R FGFVTF +++ A++ M
Sbjct: 8 CFVGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGM 67
Query: 71 DGAELYGRVLTVNYA 85
+G EL GR +TVN A
Sbjct: 68 NGQELDGRNITVNEA 82
>sp|P10979|GRPA_MAIZE Glycine-rich RNA-binding, abscisic acid-inducible protein OS=Zea
mays GN=RAB15 PE=1 SV=1
Length = 157
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
+VGGLA + L AF +G+I D K D+ T + R FGFVTF + + A++NM
Sbjct: 10 CFVGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENM 69
Query: 71 DGAELYGRVLTVNYA 85
+G EL GR +TVN A
Sbjct: 70 NGKELDGRNITVNQA 84
>sp|Q9SVM8|RBG2_ARATH Glycine-rich RNA-binding protein 2, mitochondrial OS=Arabidopsis
thaliana GN=RBG2 PE=1 SV=1
Length = 158
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 1 MANLAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEK 60
+ +L + L++GGL+ ++A L AF FGD+ D K +D+ T + R FGFV F ++
Sbjct: 27 LGSLRLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDE 86
Query: 61 EDAIQAMDNMDGAELYGRVLTVNYA 85
A A+ MDG EL GR + VN A
Sbjct: 87 GAATAAISEMDGKELNGRHIRVNPA 111
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQA 66
Q T+YVGGL E+V+E +L F+ G + + P D+ T +H+ +GFV FL +EDA A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 67 MDNMDGAELYGRVLTVNYA 85
+ M+ +LYG+ + VN A
Sbjct: 71 IKIMNMIKLYGKPIRVNKA 89
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 3 NLAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTP---LDQATQKHRSFGFVTFLE 59
NL V N +++G L E++E +L+ F FG I ++TP D T + + F+ F
Sbjct: 95 NLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVI--LQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 60 KEDAIQAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWA 104
+ + A++ M+G L R +TV+YA + KG G AA+ + A
Sbjct: 152 FDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLA 196
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQA 66
Q T+YVGGL E+V+E +L F+ G + + P D+ T +H+ +GFV FL +EDA A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 67 MDNMDGAELYGRVLTVNYA 85
+ M+ +LYG+ + VN A
Sbjct: 71 IKIMNMIKLYGKPIRVNKA 89
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 3 NLAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTP---LDQATQKHRSFGFVTFLE 59
NL V N +++G L E++E +L+ F FG I ++TP D T + + F+ F
Sbjct: 95 NLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVI--LQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 60 KEDAIQAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWA 104
+ + A++ M+G L R +TV+YA + KG G AA+ + A
Sbjct: 152 FDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLA 196
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 50/79 (63%)
Query: 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQA 66
Q T+YVGGL E+V+E +L F+ G + + P D+ T +H+ +GFV FL +EDA A
Sbjct: 11 QDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYA 70
Query: 67 MDNMDGAELYGRVLTVNYA 85
+ M+ +LYG+ + VN A
Sbjct: 71 IKIMNMIKLYGKPIRVNKA 89
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 6/105 (5%)
Query: 3 NLAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTP---LDQATQKHRSFGFVTFLE 59
NL V N +++G L E++E +L+ F FG I ++TP D T + + F+ F
Sbjct: 95 NLDVGAN-IFIGNLDPEIDEKLLYDTFSAFGVI--LQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 60 KEDAIQAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWA 104
+ + A++ M+G L R +TV+YA + KG G AA+ + A
Sbjct: 152 FDASDAAIEAMNGQYLCNRPITVSYAFKKDSKGERHGSAAERLLA 196
>sp|Q9C909|RBG5_ARATH Glycine-rich RNA-binding protein 5, mitochondrial OS=Arabidopsis
thaliana GN=RBG5 PE=2 SV=1
Length = 289
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/81 (38%), Positives = 49/81 (60%), Gaps = 1/81 (1%)
Query: 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAI 64
+ + ++VGG++ +E L AF +G++ D K +D+ T + R F FVTF E+A
Sbjct: 30 CMSSSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEAS 89
Query: 65 QAMDNMDGAELYGRVLTVNYA 85
AM +DG +L+GR + VNYA
Sbjct: 90 NAM-QLDGQDLHGRRIRVNYA 109
>sp|Q57014|RBPA_SYNY3 Putative RNA-binding protein RbpA OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=rbpA PE=3 SV=3
Length = 101
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 47/78 (60%)
Query: 10 TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69
++YVG L+ +V+EA L A F +G +K V+ P D+ T + R FGFV + A++
Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61
Query: 70 MDGAELYGRVLTVNYALP 87
+DGAE GR L VN A P
Sbjct: 62 LDGAEWMGRDLKVNKAKP 79
>sp|Q09442|SF3B4_CAEEL Splicing factor 3B subunit 4 OS=Caenorhabditis elegans GN=sap-49
PE=1 SV=2
Length = 388
Score = 63.9 bits (154), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 49/79 (62%)
Query: 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQA 66
Q T+YVGGL E+V+E+IL + G + V P D+ T H+ FGFV F+ +EDA A
Sbjct: 11 QDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDADYA 70
Query: 67 MDNMDGAELYGRVLTVNYA 85
+ ++ +LYG+ + VN A
Sbjct: 71 IKILNMIKLYGKPIKVNKA 89
Score = 52.8 bits (125), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 58/116 (50%), Gaps = 2/116 (1%)
Query: 3 NLAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDV-KTPLDQATQKHRSFGFVTFLEKE 61
N+ V N ++VG L EV+E +L+ F FG I V K D + + F F+ F E
Sbjct: 95 NMDVGAN-IFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFE 153
Query: 62 DAIQAMDNMDGAELYGRVLTVNYALPERIKGGEQGWAAQPIWADADTWFERQQQEE 117
+ A++ M+G L R +TV+YA KG G AA+ + A + F + + +
Sbjct: 154 ASDTALEAMNGQFLCNRAITVSYAFKRDSKGERHGTAAERMLAAQNPLFPKDRPHQ 209
>sp|Q03251|RBG8_ARATH Glycine-rich RNA-binding protein 8 OS=Arabidopsis thaliana
GN=RBG8 PE=1 SV=1
Length = 169
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
+VGGLA N+ L F FGD+ D K D+ + + R FGFVTF +++ A++ M
Sbjct: 8 CFVGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEM 67
Query: 71 DGAELYGRVLTVNYA 85
+G EL GRV+TVN A
Sbjct: 68 NGKELDGRVITVNEA 82
>sp|Q05966|GRP10_BRANA Glycine-rich RNA-binding protein 10 OS=Brassica napus GN=GRP10
PE=2 SV=1
Length = 169
Score = 63.9 bits (154), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/75 (44%), Positives = 45/75 (60%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
+VGGLA +A L F FG++ D K D+ T + R FGFVTF +++ A+D M
Sbjct: 8 CFVGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEM 67
Query: 71 DGAELYGRVLTVNYA 85
+G EL GR +TVN A
Sbjct: 68 NGKELDGRTITVNEA 82
>sp|Q43472|GRP_HORVU Glycine-rich RNA-binding protein blt801 OS=Hordeum vulgare
GN=blt801 PE=1 SV=1
Length = 161
Score = 63.5 bits (153), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/79 (41%), Positives = 45/79 (56%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
+VGGL ++ L AF +GD+ D K D+ T + R FGFVTF E QA++ M
Sbjct: 8 CFVGGLRWATDDQSLQNAFSKYGDVIDSKIITDRETGRSRGFGFVTFASDEAMRQAIEAM 67
Query: 71 DGAELYGRVLTVNYALPER 89
+G +L GR +TVN A R
Sbjct: 68 NGQDLDGRNITVNEAQSRR 86
>sp|Q44554|RBPB_NOSS1 Putative RNA-binding protein RbpB OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpB PE=3 SV=3
Length = 103
Score = 63.2 bits (152), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 47/78 (60%)
Query: 10 TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69
++YVG L+ +V E L+A F +G +K V+ P+D+ T + R FGFV + A++
Sbjct: 2 SIYVGNLSYDVTEESLNAVFAEYGSVKRVQLPVDRETGRVRGFGFVEMGSDAEETAAIEA 61
Query: 70 MDGAELYGRVLTVNYALP 87
+DGAE GR L VN A P
Sbjct: 62 LDGAEWMGRDLKVNKAKP 79
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
++VG L+ E+ + AAF PFG I D + D AT K + +GFV+F K DA A+ M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 71 DGAELYGRVLTVNYA 85
G L GR + N+A
Sbjct: 168 GGQWLGGRQIRTNWA 182
Score = 44.7 bits (104), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 10 TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69
TLYVG L+ +V EA++ F G K+ K +D T + + FV F E A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 70 MDGAELYGRVLTVNYA 85
M+G ++ G+ + VN+A
Sbjct: 66 MNGRKIMGKEVKVNWA 81
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 10 TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69
T+Y GG+ + E ++ F PFG I +++ D + + FV F E A A+ +
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVS 268
Query: 70 MDGAELYGRVLTVNYA 85
++G + G V+ +
Sbjct: 269 VNGTTIEGHVVKCYWG 284
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 43/75 (57%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
++VG L+ E+ + AAF PFG I D + D AT K + +GFV+F K DA A+ M
Sbjct: 108 VFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQM 167
Query: 71 DGAELYGRVLTVNYA 85
G L GR + N+A
Sbjct: 168 GGQWLGGRQIRTNWA 182
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 2/76 (2%)
Query: 10 TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69
TLYVG L+ +V EA++ F G K+ K +D T + + FV F E A A+
Sbjct: 8 TLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAA 65
Query: 70 MDGAELYGRVLTVNYA 85
M+G ++ G+ + VN+A
Sbjct: 66 MNGRKIMGKEVKVNWA 81
Score = 43.9 bits (102), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 6/76 (7%)
Query: 10 TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69
T+Y GG+ + E ++ F PFG I +++ D + + FV F E A A+ +
Sbjct: 215 TVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFSSHESAAHAIVS 268
Query: 70 MDGAELYGRVLTVNYA 85
++G + G V+ +
Sbjct: 269 VNGTTIEGHVVKCYWG 284
>sp|Q9LIS2|RBG4_ARATH Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis
thaliana GN=RBG4 PE=2 SV=1
Length = 136
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 49/85 (57%)
Query: 1 MANLAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEK 60
+ +L + L+VGGL+ +++ L AF FG++ + D+ T + R FGFV+F +
Sbjct: 27 LGSLRYMSSKLFVGGLSWGTDDSSLKQAFTSFGEVTEATVIADRETGRSRGFGFVSFSCE 86
Query: 61 EDAIQAMDNMDGAELYGRVLTVNYA 85
+ A A+ MDG EL GR + VN A
Sbjct: 87 DSANNAIKEMDGKELNGRQIRVNLA 111
>sp|Q86U06|RBM23_HUMAN Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1
Length = 439
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/83 (37%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
LYVG L + E +L F PFG I ++ D T + + +GF+TF + E A +A++ +
Sbjct: 265 LYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQL 324
Query: 71 DGAELYGRVLTVNYALPERIKGG 93
+G EL GR + V + + ER+ GG
Sbjct: 325 NGFELAGRPMRVGH-VTERLDGG 346
>sp|O94359|YHOC_SCHPO Uncharacterized RNA-binding protein C428.12c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC428.12c PE=4 SV=2
Length = 116
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 36/83 (43%), Positives = 51/83 (61%), Gaps = 4/83 (4%)
Query: 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQA 66
+K T++VG LA V E++L+ AFIPFG+I V + RS+ FV F E EDA +A
Sbjct: 4 RKATVHVGNLAPSVTESLLYNAFIPFGEIISVALHRKEKAVD-RSYAFVEFDEPEDAKEA 62
Query: 67 MDNMDGAELYGRVLTV---NYAL 86
M+NM+ + L R + V N+AL
Sbjct: 63 MENMNYSILCDRCIRVSPANFAL 85
>sp|P49311|GRP2_SINAL Glycine-rich RNA-binding protein GRP2A OS=Sinapis alba PE=2 SV=1
Length = 169
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
+VGGLA +E L AF FG++ D K D+ T + R FGFVTF +++ A++ M
Sbjct: 10 CFVGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGM 69
Query: 71 DGAELYGRVLTVNYA 85
+G +L GR +TVN A
Sbjct: 70 NGQDLDGRSITVNEA 84
>sp|Q10422|YDC1_SCHPO Uncharacterized RNA-binding protein C25G10.01
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC25G10.01 PE=1 SV=1
Length = 297
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%)
Query: 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMD 68
N L+V G+A + E L F FG + V+ + T+ R FGF++F E+A A+D
Sbjct: 101 NDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAID 160
Query: 69 NMDGAELYGRVLTV 82
N++ E YGRVL V
Sbjct: 161 NLNSQEFYGRVLNV 174
>sp|Q9PTX2|CIRBP_LITCT Cold-inducible RNA-binding protein OS=Lithobates catesbeiana
GN=cirbp PE=2 SV=1
Length = 164
Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 48/82 (58%)
Query: 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63
++ + L+VGGL+ + +E L F +G I++V D+ T++ R FGFVTF EDA
Sbjct: 1 MSCDEGKLFVGGLSFDTDEQCLETVFSKYGQIQEVVVVKDRETKRSRGFGFVTFENCEDA 60
Query: 64 IQAMDNMDGAELYGRVLTVNYA 85
AM M+G + GR + V+ A
Sbjct: 61 KDAMAGMNGKTVDGRQIRVDQA 82
>sp|Q99069|GRP1_SORBI Glycine-rich RNA-binding protein 1 (Fragment) OS=Sorghum bicolor
GN=GRP1 PE=2 SV=1
Length = 142
Score = 61.2 bits (147), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 41/61 (67%)
Query: 25 LHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84
LH+AF +G++ + K LD+ TQ+ R FGFVTF +E A++ M+G EL GR +TVN
Sbjct: 3 LHSAFSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNE 62
Query: 85 A 85
A
Sbjct: 63 A 63
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
++VG L+ E+ + +AF PFG I D + D AT K + +GFV+F K DA A+ +M
Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158
Query: 71 DGAELYGRVLTVNYA 85
G L GR + N+A
Sbjct: 159 GGQWLGGRQIRTNWA 173
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Query: 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQA 66
Q TLYVG L+ +V E ++ F G K K + + + + FV F E DA A
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAA 64
Query: 67 MDNMDGAELYGRVLTVNYA 85
+ M+G ++ G+ + VN+A
Sbjct: 65 LAAMNGRKILGKEVKVNWA 83
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 1 MANLAVQKN-TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLE 59
+ N + KN T+Y GG+A + + ++ F PFG I +++ + + FV F
Sbjct: 196 VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIR------VFPEKGYSFVRFST 249
Query: 60 KEDAIQAMDNMDGAELYGRVLTVNYA 85
E A A+ +++G + G V+ +
Sbjct: 250 HESAAHAIVSVNGTTIEGHVVKCYWG 275
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
++VG L+ E+ + +AF PFG I D + D AT K + +GFV+F K DA A+ +M
Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175
Query: 71 DGAELYGRVLTVNYA 85
G L GR + N+A
Sbjct: 176 GGQWLGGRQIRTNWA 190
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 7/86 (8%)
Query: 1 MANLAVQKN-TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLE 59
+ N + KN T+Y GG+A + + ++ F PFG I +++ + + FV F
Sbjct: 213 VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIR------VFPEKGYSFVRFST 266
Query: 60 KEDAIQAMDNMDGAELYGRVLTVNYA 85
E A A+ +++G + G V+ +
Sbjct: 267 HESAAHAIVSVNGTTIEGHVVKCYWG 292
Score = 40.8 bits (94), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 44/94 (46%), Gaps = 15/94 (15%)
Query: 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQ------------ATQKHRS--- 51
Q TLYVG L+ +V E ++ F G K K +Q + +H S
Sbjct: 7 QPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHTSNDP 66
Query: 52 FGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85
+ FV F E DA A+ M+G ++ G+ + VN+A
Sbjct: 67 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWA 100
>sp|Q03250|RBG7_ARATH Glycine-rich RNA-binding protein 7 OS=Arabidopsis thaliana
GN=RBG7 PE=1 SV=1
Length = 176
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 46/75 (61%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
+VGGLA ++ L AF +GD+ D K D+ T + R FGFVTF +++ A++ M
Sbjct: 10 CFVGGLAWATDDRALETAFAQYGDVIDSKIINDRETGRSRGFGFVTFKDEKAMKDAIEGM 69
Query: 71 DGAELYGRVLTVNYA 85
+G +L GR +TVN A
Sbjct: 70 NGQDLDGRSITVNEA 84
>sp|Q5RC80|RBM39_PONAB RNA-binding protein 39 OS=Pongo abelii GN=RBM39 PE=2 SV=1
Length = 524
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
LYVG L + E +L F PFG I+ ++ +D T + + +GF+TF + E A +A++ +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 71 DGAELYGRVLTVNYA 85
+G EL GR + V +
Sbjct: 312 NGFELAGRPMKVGHV 326
>sp|Q8VH51|RBM39_MOUSE RNA-binding protein 39 OS=Mus musculus GN=Rbm39 PE=1 SV=2
Length = 530
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
LYVG L + E +L F PFG I+ ++ +D T + + +GF+TF + E A +A++ +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 71 DGAELYGRVLTVNYA 85
+G EL GR + V +
Sbjct: 312 NGFELAGRPMKVGHV 326
>sp|Q14498|RBM39_HUMAN RNA-binding protein 39 OS=Homo sapiens GN=RBM39 PE=1 SV=2
Length = 530
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
LYVG L + E +L F PFG I+ ++ +D T + + +GF+TF + E A +A++ +
Sbjct: 252 LYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQL 311
Query: 71 DGAELYGRVLTVNYA 85
+G EL GR + V +
Sbjct: 312 NGFELAGRPMKVGHV 326
>sp|Q44556|RBPD_NOSS1 Putative RNA-binding protein RbpD OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpD PE=3 SV=3
Length = 94
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/78 (42%), Positives = 42/78 (53%)
Query: 10 TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69
T+YVG L+ EA L A F +G++K V P D+ T + R F FV E A+
Sbjct: 2 TIYVGNLSYRATEADLKAVFADYGEVKRVVLPTDRETGRMRGFAFVEMNEDAQEDAAITE 61
Query: 70 MDGAELYGRVLTVNYALP 87
+DGAE GR L VN A P
Sbjct: 62 LDGAEWMGRQLRVNKAKP 79
>sp|Q5RF83|CIRBP_PONAB Cold-inducible RNA-binding protein OS=Pongo abelii GN=CIRBP PE=2
SV=1
Length = 172
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63
+A + L+VGGL+ + NE L F +G I +V D+ TQ+ R FGFVTF +DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 64 IQAMDNMDGAELYGRVLTVNYA 85
AM M+G + GR + V+ A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>sp|Q14011|CIRBP_HUMAN Cold-inducible RNA-binding protein OS=Homo sapiens GN=CIRBP PE=1
SV=1
Length = 172
Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 47/82 (57%)
Query: 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63
+A + L+VGGL+ + NE L F +G I +V D+ TQ+ R FGFVTF +DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 64 IQAMDNMDGAELYGRVLTVNYA 85
AM M+G + GR + V+ A
Sbjct: 61 KDAMMAMNGKSVDGRQIRVDQA 82
>sp|P60825|CIRBP_RAT Cold-inducible RNA-binding protein OS=Rattus norvegicus GN=Cirbp
PE=2 SV=1
Length = 172
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63
+A + L+VGGL+ + NE L F +G I +V D+ TQ+ R FGFVTF +DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 64 IQAMDNMDGAELYGRVLTVN 83
AM M+G + GR + V+
Sbjct: 61 KDAMMAMNGKSVDGRQIRVD 80
>sp|P60824|CIRBP_MOUSE Cold-inducible RNA-binding protein OS=Mus musculus GN=Cirbp PE=1
SV=1
Length = 172
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63
+A + L+VGGL+ + NE L F +G I +V D+ TQ+ R FGFVTF +DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 64 IQAMDNMDGAELYGRVLTVN 83
AM M+G + GR + V+
Sbjct: 61 KDAMMAMNGKSVDGRQIRVD 80
>sp|P60826|CIRBP_CRIGR Cold-inducible RNA-binding protein OS=Cricetulus griseus GN=CIRBP
PE=2 SV=1
Length = 172
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 46/80 (57%)
Query: 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63
+A + L+VGGL+ + NE L F +G I +V D+ TQ+ R FGFVTF +DA
Sbjct: 1 MASDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDA 60
Query: 64 IQAMDNMDGAELYGRVLTVN 83
AM M+G + GR + V+
Sbjct: 61 KDAMMAMNGKSVDGRQIRVD 80
>sp|O89086|RBM3_MOUSE Putative RNA-binding protein 3 OS=Mus musculus GN=Rbm3 PE=1 SV=1
Length = 153
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63
++ ++ L+VGGL +E L F FG I +V D+ TQ+ R FGF+TF E A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 64 IQAMDNMDGAELYGRVLTVNYA 85
AM M+G L GR + V++A
Sbjct: 61 SDAMRAMNGESLDGRQIRVDHA 82
>sp|O93235|CIRBA_XENLA Cold-inducible RNA-binding protein A OS=Xenopus laevis GN=cirbp-a
PE=1 SV=2
Length = 166
Score = 60.1 bits (144), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 44/75 (58%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
L++GGL E NE L AF +G I +V D+ T++ R FGFVTF +DA AM M
Sbjct: 7 LFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKDAMMAM 66
Query: 71 DGAELYGRVLTVNYA 85
+G + GR + V+ A
Sbjct: 67 NGKSVDGRQIRVDQA 81
>sp|Q8T6B9|PUF68_DROME Poly(U)-binding-splicing factor half pint OS=Drosophila
melanogaster GN=pUf68 PE=1 SV=2
Length = 637
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 42/72 (58%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
+YVG ++ E+ E + AF PFG IK + D TQKH+ F FV + E A A++ M
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 71 DGAELYGRVLTV 82
+GA + GR + V
Sbjct: 192 NGALMGGRNIKV 203
Score = 37.7 bits (86), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 41/78 (52%)
Query: 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMD 68
N +YV + +++E + + F FG I K + H+ +GF+ + K+ +A+
Sbjct: 227 NRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIA 286
Query: 69 NMDGAELYGRVLTVNYAL 86
+M+ +L G++L V ++
Sbjct: 287 SMNLFDLGGQLLRVGRSI 304
>sp|P49310|GRP1_SINAL Glycine-rich RNA-binding protein GRP1A OS=Sinapis alba PE=2 SV=1
Length = 166
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 46/75 (61%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
+VGGLA ++ L AF +G++ D K D+ T + R FGFVTF +++ A++ M
Sbjct: 10 CFVGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGM 69
Query: 71 DGAELYGRVLTVNYA 85
+G +L GR +TVN A
Sbjct: 70 NGQDLDGRSITVNEA 84
>sp|Q10B98|C3H25_ORYSJ Zinc finger CCCH domain-containing protein 25 OS=Oryza sativa
subsp. japonica GN=Os03g0826400 PE=2 SV=1
Length = 312
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 47/74 (63%)
Query: 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70
++VGG+ ++ E L A F +G++ DV D+ T K + F F+ + ++ I A+DN+
Sbjct: 38 VFVGGIPYDLTEGDLLAVFAQYGEVVDVNLVRDKGTGKSKGFAFLAYEDQRSTILAVDNL 97
Query: 71 DGAELYGRVLTVNY 84
+GA++ GR++ V++
Sbjct: 98 NGAKVLGRIVRVDH 111
>sp|P98179|RBM3_HUMAN Putative RNA-binding protein 3 OS=Homo sapiens GN=RBM3 PE=1 SV=1
Length = 157
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 46/82 (56%)
Query: 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63
++ ++ L+VGGL +E L F FG I +V D+ TQ+ R FGF+TF E A
Sbjct: 1 MSSEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHA 60
Query: 64 IQAMDNMDGAELYGRVLTVNYA 85
AM M+G L GR + V++A
Sbjct: 61 SVAMRAMNGESLDGRQIRVDHA 82
>sp|Q9WX37|RBPE_NOSS1 Putative RNA-binding protein RbpE OS=Nostoc sp. (strain PCC 7120
/ UTEX 2576) GN=rbpE PE=3 SV=3
Length = 99
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/87 (37%), Positives = 44/87 (50%)
Query: 10 TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69
++YVG L+ V + L F +G + V+ P D+ T + R FGFV A+
Sbjct: 2 SIYVGNLSYSVTQDDLTKVFSEYGSVTRVQLPTDRETGRVRGFGFVEMESSAAEDAAIQA 61
Query: 70 MDGAELYGRVLTVNYALPERIKGGEQG 96
+DGAE GRVL VN A P KG G
Sbjct: 62 LDGAEWMGRVLKVNKARPREEKGARSG 88
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.127 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,651,081
Number of Sequences: 539616
Number of extensions: 2565757
Number of successful extensions: 21404
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 505
Number of HSP's that attempted gapping in prelim test: 16955
Number of HSP's gapped (non-prelim): 4307
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 57 (26.6 bits)