Query 030632
Match_columns 174
No_of_seqs 204 out of 2038
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 16:41:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030632.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030632hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0111 Cyclophilin-type pepti 99.8 2E-21 4.4E-26 143.1 7.1 159 5-168 7-172 (298)
2 PLN03134 glycine-rich RNA-bind 99.8 9E-20 2E-24 129.9 13.0 86 5-90 31-116 (144)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 1.3E-18 2.9E-23 140.4 11.8 83 7-89 268-350 (352)
4 KOG0127 Nucleolar protein fibr 99.8 7.3E-19 1.6E-23 143.8 7.5 85 6-91 115-199 (678)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.8 5.9E-18 1.3E-22 136.7 10.7 84 7-90 2-85 (352)
6 KOG0122 Translation initiation 99.7 1.6E-17 3.4E-22 124.2 9.5 83 6-88 187-269 (270)
7 TIGR01659 sex-lethal sex-letha 99.7 2.3E-17 4.9E-22 132.8 10.0 85 5-89 104-188 (346)
8 PF00076 RRM_1: RNA recognitio 99.7 2.7E-17 5.9E-22 102.5 8.3 70 11-81 1-70 (70)
9 KOG0121 Nuclear cap-binding pr 99.7 2.4E-17 5.2E-22 112.1 6.7 81 6-86 34-114 (153)
10 PLN03213 repressor of silencin 99.7 2.5E-16 5.5E-21 128.0 11.3 91 6-120 8-100 (759)
11 TIGR01645 half-pint poly-U bin 99.7 5E-16 1.1E-20 131.9 10.7 82 7-88 203-284 (612)
12 PF14259 RRM_6: RNA recognitio 99.7 9.6E-16 2.1E-20 95.9 9.3 70 11-81 1-70 (70)
13 KOG0107 Alternative splicing f 99.7 5E-16 1.1E-20 110.9 8.5 80 6-90 8-87 (195)
14 PLN03120 nucleic acid binding 99.6 8.3E-16 1.8E-20 117.5 9.5 76 8-87 4-79 (260)
15 TIGR01645 half-pint poly-U bin 99.6 7.1E-16 1.5E-20 131.0 9.6 81 6-86 105-185 (612)
16 TIGR01659 sex-lethal sex-letha 99.6 1.7E-15 3.6E-20 122.1 11.1 82 7-88 192-275 (346)
17 KOG0126 Predicted RNA-binding 99.6 4.2E-17 9.1E-22 117.1 1.2 80 7-86 34-113 (219)
18 KOG0125 Ataxin 2-binding prote 99.6 2.9E-15 6.4E-20 116.2 10.5 80 7-88 95-174 (376)
19 KOG0149 Predicted RNA-binding 99.6 6.8E-16 1.5E-20 115.0 6.5 78 8-86 12-89 (247)
20 TIGR01642 U2AF_lg U2 snRNP aux 99.6 4.3E-15 9.2E-20 125.5 11.5 82 7-88 294-375 (509)
21 TIGR01622 SF-CC1 splicing fact 99.6 3.4E-15 7.5E-20 124.6 10.7 80 7-86 185-264 (457)
22 KOG0148 Apoptosis-promoting RN 99.6 3.9E-15 8.4E-20 113.0 9.3 79 4-88 160-238 (321)
23 KOG0113 U1 small nuclear ribon 99.6 4.9E-15 1.1E-19 113.7 9.4 82 6-87 99-180 (335)
24 TIGR01628 PABP-1234 polyadenyl 99.6 5.8E-15 1.2E-19 126.3 10.4 78 10-87 2-79 (562)
25 KOG0145 RNA-binding protein EL 99.6 7.2E-15 1.6E-19 111.2 9.6 116 6-121 39-159 (360)
26 KOG0131 Splicing factor 3b, su 99.6 2.4E-15 5.1E-20 108.1 6.1 83 4-86 5-87 (203)
27 smart00362 RRM_2 RNA recogniti 99.6 1.4E-14 2.9E-19 89.7 8.8 72 10-83 1-72 (72)
28 KOG0130 RNA-binding protein RB 99.6 4.1E-15 8.9E-20 102.2 6.7 84 7-90 71-154 (170)
29 PLN03121 nucleic acid binding 99.6 1.5E-14 3.2E-19 109.2 9.7 77 6-86 3-79 (243)
30 TIGR01628 PABP-1234 polyadenyl 99.6 1.1E-14 2.3E-19 124.6 10.2 82 6-88 283-364 (562)
31 KOG0148 Apoptosis-promoting RN 99.6 8.4E-15 1.8E-19 111.2 8.0 82 8-89 62-143 (321)
32 KOG0114 Predicted RNA-binding 99.6 5E-14 1.1E-18 92.6 10.6 78 8-88 18-95 (124)
33 TIGR01622 SF-CC1 splicing fact 99.6 1.8E-14 3.9E-19 120.3 10.7 80 7-87 88-167 (457)
34 KOG0117 Heterogeneous nuclear 99.6 1.3E-14 2.9E-19 116.6 9.2 84 4-87 79-163 (506)
35 KOG4207 Predicted splicing fac 99.6 3.8E-15 8.3E-20 109.1 5.6 78 9-86 14-91 (256)
36 TIGR01648 hnRNP-R-Q heterogene 99.6 1.7E-14 3.6E-19 122.4 9.2 81 5-86 55-136 (578)
37 COG0724 RNA-binding proteins ( 99.5 2.9E-14 6.2E-19 109.5 9.5 80 8-87 115-194 (306)
38 smart00360 RRM RNA recognition 99.5 5.1E-14 1.1E-18 86.7 7.9 71 13-83 1-71 (71)
39 KOG0144 RNA-binding protein CU 99.5 5.9E-15 1.3E-19 118.1 4.3 86 7-93 123-211 (510)
40 KOG0105 Alternative splicing f 99.5 6E-14 1.3E-18 101.3 8.0 80 6-88 4-83 (241)
41 KOG0145 RNA-binding protein EL 99.5 1.4E-13 3.1E-18 104.2 10.3 82 5-86 275-356 (360)
42 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 1.2E-13 2.6E-18 116.2 10.8 78 6-88 273-351 (481)
43 cd00590 RRM RRM (RNA recogniti 99.5 2.3E-13 5E-18 84.5 9.2 74 10-84 1-74 (74)
44 KOG0108 mRNA cleavage and poly 99.5 4E-14 8.7E-19 116.1 7.2 82 9-90 19-100 (435)
45 KOG0415 Predicted peptidyl pro 99.5 5.2E-14 1.1E-18 110.5 6.2 86 2-87 233-318 (479)
46 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 3.3E-13 7.2E-18 113.5 9.9 76 7-88 1-78 (481)
47 TIGR01648 hnRNP-R-Q heterogene 99.5 3.9E-13 8.6E-18 114.1 10.3 76 7-90 232-309 (578)
48 KOG0124 Polypyrimidine tract-b 99.5 5.9E-14 1.3E-18 110.7 4.7 75 9-83 114-188 (544)
49 KOG0146 RNA-binding protein ET 99.4 1.1E-13 2.4E-18 105.1 5.0 86 5-90 282-367 (371)
50 KOG0127 Nucleolar protein fibr 99.4 2.5E-13 5.5E-18 111.7 7.3 83 7-89 4-86 (678)
51 PF13893 RRM_5: RNA recognitio 99.4 1.4E-12 3.1E-17 78.1 8.1 56 25-85 1-56 (56)
52 KOG4206 Spliceosomal protein s 99.4 1.3E-12 2.7E-17 97.1 7.6 83 5-90 6-92 (221)
53 KOG0147 Transcriptional coacti 99.4 7.2E-13 1.6E-17 109.0 6.5 79 9-87 279-357 (549)
54 KOG0144 RNA-binding protein CU 99.4 8.3E-13 1.8E-17 106.0 6.6 84 8-91 34-120 (510)
55 KOG0131 Splicing factor 3b, su 99.4 1.1E-12 2.5E-17 94.4 6.3 89 6-94 94-183 (203)
56 smart00361 RRM_1 RNA recogniti 99.4 2.9E-12 6.3E-17 80.3 7.4 61 22-82 2-69 (70)
57 KOG4208 Nucleolar RNA-binding 99.3 7.4E-12 1.6E-16 91.9 7.8 82 7-88 48-130 (214)
58 KOG4661 Hsp27-ERE-TATA-binding 99.3 3.5E-12 7.5E-17 105.7 6.7 81 6-86 403-483 (940)
59 KOG0109 RNA-binding protein LA 99.3 8.3E-12 1.8E-16 95.9 6.8 74 9-90 3-76 (346)
60 KOG4212 RNA-binding protein hn 99.3 1.4E-11 3E-16 99.4 8.0 82 4-86 40-122 (608)
61 KOG0132 RNA polymerase II C-te 99.3 1.2E-11 2.6E-16 105.4 7.6 79 8-92 421-499 (894)
62 KOG0117 Heterogeneous nuclear 99.3 1.3E-11 2.7E-16 99.6 7.1 74 9-90 260-333 (506)
63 KOG0110 RNA-binding protein (R 99.3 5E-12 1.1E-16 106.8 4.7 80 7-86 612-691 (725)
64 KOG0146 RNA-binding protein ET 99.2 1.2E-11 2.6E-16 94.2 5.4 83 7-90 18-103 (371)
65 KOG0153 Predicted RNA-binding 99.2 7.2E-11 1.6E-15 92.7 8.1 74 8-87 228-302 (377)
66 KOG0109 RNA-binding protein LA 99.2 4.3E-11 9.4E-16 92.0 6.6 78 5-90 75-152 (346)
67 KOG0123 Polyadenylate-binding 99.2 9.9E-11 2.1E-15 95.2 7.9 79 10-91 78-156 (369)
68 TIGR01642 U2AF_lg U2 snRNP aux 99.1 2.6E-10 5.7E-15 96.4 9.6 81 6-86 407-500 (509)
69 KOG0124 Polypyrimidine tract-b 99.1 1.4E-10 3E-15 91.9 6.4 79 8-86 210-288 (544)
70 KOG4205 RNA-binding protein mu 99.1 1.6E-10 3.5E-15 91.4 5.4 85 7-92 5-89 (311)
71 KOG1457 RNA binding protein (c 99.0 1.9E-09 4.1E-14 80.3 9.5 82 8-89 34-119 (284)
72 KOG0123 Polyadenylate-binding 99.0 7E-10 1.5E-14 90.2 7.8 75 9-89 2-76 (369)
73 KOG0110 RNA-binding protein (R 99.0 1.1E-09 2.4E-14 92.8 7.5 78 9-86 516-596 (725)
74 KOG0533 RRM motif-containing p 99.0 2.1E-09 4.5E-14 82.2 7.9 80 7-87 82-161 (243)
75 KOG4212 RNA-binding protein hn 99.0 9.8E-10 2.1E-14 88.8 6.3 76 5-85 533-608 (608)
76 KOG4205 RNA-binding protein mu 99.0 1.5E-09 3.3E-14 85.9 6.5 84 8-92 97-180 (311)
77 KOG0226 RNA-binding proteins [ 98.9 1.9E-09 4.2E-14 81.6 6.1 81 5-85 187-267 (290)
78 KOG1548 Transcription elongati 98.9 9.1E-09 2E-13 81.0 10.0 81 8-89 134-222 (382)
79 KOG0116 RasGAP SH3 binding pro 98.9 3.5E-09 7.6E-14 86.8 8.1 79 8-87 288-366 (419)
80 KOG0151 Predicted splicing reg 98.9 2E-09 4.3E-14 91.4 6.4 81 6-86 172-255 (877)
81 KOG0106 Alternative splicing f 98.9 1.7E-09 3.8E-14 81.0 5.0 72 9-88 2-73 (216)
82 PF04059 RRM_2: RNA recognitio 98.9 1E-08 2.2E-13 67.9 7.9 79 8-86 1-85 (97)
83 KOG4209 Splicing factor RNPS1, 98.9 6.5E-09 1.4E-13 79.4 8.0 82 6-88 99-180 (231)
84 KOG4660 Protein Mei2, essentia 98.9 1.2E-09 2.5E-14 90.5 3.9 72 5-81 72-143 (549)
85 KOG4454 RNA binding protein (R 98.7 4E-09 8.7E-14 78.4 2.2 81 3-85 4-84 (267)
86 KOG4211 Splicing factor hnRNP- 98.6 2.1E-07 4.5E-12 76.4 8.5 79 5-87 7-85 (510)
87 KOG0120 Splicing factor U2AF, 98.5 8.9E-08 1.9E-12 79.8 4.3 84 6-89 287-370 (500)
88 KOG1190 Polypyrimidine tract-b 98.4 2.1E-06 4.5E-11 69.3 9.1 76 8-88 297-373 (492)
89 KOG3152 TBP-binding protein, a 98.4 4E-07 8.8E-12 69.2 3.7 73 7-79 73-157 (278)
90 KOG4211 Splicing factor hnRNP- 98.3 2.3E-06 5E-11 70.4 7.2 77 7-85 102-179 (510)
91 KOG1995 Conserved Zn-finger pr 98.3 5.8E-07 1.3E-11 71.3 3.3 83 6-88 64-154 (351)
92 KOG4210 Nuclear localization s 98.2 1.4E-06 3E-11 68.7 4.1 84 7-91 183-267 (285)
93 KOG4849 mRNA cleavage factor I 98.2 2E-06 4.3E-11 68.3 4.5 77 9-85 81-159 (498)
94 PF11608 Limkain-b1: Limkain b 98.2 5.1E-06 1.1E-10 53.0 5.4 68 9-86 3-75 (90)
95 KOG1457 RNA binding protein (c 98.2 1.8E-06 3.9E-11 64.7 3.8 67 6-76 208-274 (284)
96 KOG0147 Transcriptional coacti 98.2 6.7E-07 1.4E-11 74.3 1.6 80 8-88 179-258 (549)
97 KOG2193 IGF-II mRNA-binding pr 98.1 2.2E-06 4.7E-11 69.5 2.3 110 9-125 2-116 (584)
98 PF08777 RRM_3: RNA binding mo 98.0 2.3E-05 5E-10 52.8 6.6 71 8-84 1-76 (105)
99 COG5175 MOT2 Transcriptional r 98.0 1.4E-05 3E-10 63.3 6.1 80 8-87 114-202 (480)
100 KOG4206 Spliceosomal protein s 98.0 3.4E-05 7.5E-10 57.8 7.6 77 5-86 143-220 (221)
101 KOG0106 Alternative splicing f 97.9 8.3E-06 1.8E-10 61.4 3.4 71 8-86 99-169 (216)
102 KOG0129 Predicted RNA-binding 97.9 5.2E-05 1.1E-09 63.0 7.7 64 6-69 368-432 (520)
103 KOG2314 Translation initiation 97.9 6E-05 1.3E-09 63.3 7.7 77 8-85 58-141 (698)
104 KOG4307 RNA binding protein RB 97.8 6.5E-05 1.4E-09 64.6 7.3 79 5-84 863-943 (944)
105 PF08952 DUF1866: Domain of un 97.7 0.00028 6.1E-09 49.9 8.0 76 2-86 21-105 (146)
106 KOG0120 Splicing factor U2AF, 97.7 0.00015 3.3E-09 60.8 7.7 64 23-86 424-490 (500)
107 PF05172 Nup35_RRM: Nup53/35/4 97.7 0.00031 6.8E-09 46.8 7.6 78 7-86 5-90 (100)
108 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00012 2.7E-09 43.0 5.0 52 9-67 2-53 (53)
109 KOG1456 Heterogeneous nuclear 97.6 0.0004 8.6E-09 55.9 8.5 81 6-91 118-202 (494)
110 KOG1190 Polypyrimidine tract-b 97.5 0.00027 5.9E-09 57.4 6.6 78 6-87 412-490 (492)
111 KOG0105 Alternative splicing f 97.5 0.00035 7.5E-09 51.2 6.5 63 7-76 114-176 (241)
112 KOG1456 Heterogeneous nuclear 97.5 0.00059 1.3E-08 55.0 7.9 76 6-86 285-361 (494)
113 KOG1855 Predicted RNA-binding 97.5 0.0001 2.3E-09 60.0 3.3 66 7-72 230-308 (484)
114 PF08675 RNA_bind: RNA binding 97.4 0.0012 2.5E-08 42.2 7.3 56 7-71 8-63 (87)
115 KOG1365 RNA-binding protein Fu 97.4 0.00022 4.8E-09 57.5 4.7 79 7-86 279-360 (508)
116 KOG0112 Large RNA-binding prot 97.4 0.00026 5.6E-09 62.4 5.4 80 5-90 452-533 (975)
117 KOG0112 Large RNA-binding prot 97.4 5.8E-05 1.3E-09 66.4 1.4 99 7-106 371-469 (975)
118 KOG1548 Transcription elongati 97.4 0.00062 1.3E-08 54.2 6.9 77 6-86 263-350 (382)
119 KOG0128 RNA-binding protein SA 97.3 0.00015 3.2E-09 63.6 2.4 80 8-88 736-815 (881)
120 KOG0129 Predicted RNA-binding 97.3 0.0016 3.5E-08 54.3 8.0 62 8-70 259-326 (520)
121 KOG1365 RNA-binding protein Fu 97.1 0.00065 1.4E-08 54.9 4.2 67 12-80 165-235 (508)
122 KOG4307 RNA binding protein RB 97.0 0.0012 2.6E-08 57.1 5.5 78 7-85 433-511 (944)
123 PF15023 DUF4523: Protein of u 96.8 0.0079 1.7E-07 42.4 6.8 74 5-86 83-160 (166)
124 KOG1996 mRNA splicing factor [ 96.8 0.005 1.1E-07 48.3 6.3 64 23-86 301-365 (378)
125 KOG2416 Acinus (induces apopto 96.7 0.0013 2.7E-08 55.9 3.1 75 6-86 442-520 (718)
126 KOG0128 RNA-binding protein SA 96.6 0.00013 2.8E-09 63.9 -3.5 68 9-76 668-735 (881)
127 KOG4676 Splicing factor, argin 96.6 0.0055 1.2E-07 49.8 5.7 76 9-85 8-86 (479)
128 KOG0115 RNA-binding protein p5 96.5 0.0025 5.3E-08 49.0 3.1 74 9-83 32-109 (275)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 96.5 0.0089 1.9E-07 44.0 5.8 82 5-86 4-96 (176)
130 KOG2135 Proteins containing th 96.2 0.0028 6.1E-08 52.5 2.2 74 9-89 373-447 (526)
131 KOG2202 U2 snRNP splicing fact 96.1 0.0022 4.7E-08 49.2 0.8 63 23-86 83-146 (260)
132 PF10309 DUF2414: Protein of u 96.0 0.041 8.9E-07 33.3 5.9 56 7-70 4-62 (62)
133 PF07576 BRAP2: BRCA1-associat 95.9 0.16 3.5E-06 34.4 9.2 76 7-84 11-91 (110)
134 KOG4660 Protein Mei2, essentia 95.8 0.016 3.5E-07 49.0 4.8 80 7-86 387-471 (549)
135 KOG2068 MOT2 transcription fac 95.6 0.005 1.1E-07 49.0 1.2 80 9-88 78-163 (327)
136 KOG2253 U1 snRNP complex, subu 95.5 0.0077 1.7E-07 51.8 2.0 72 4-84 36-107 (668)
137 PF03880 DbpA: DbpA RNA bindin 95.2 0.097 2.1E-06 32.7 5.9 67 10-85 2-74 (74)
138 PF04847 Calcipressin: Calcipr 95.2 0.081 1.8E-06 39.2 6.4 62 22-89 9-72 (184)
139 KOG4285 Mitotic phosphoprotein 95.0 0.098 2.1E-06 41.3 6.5 66 11-84 200-266 (350)
140 KOG0804 Cytoplasmic Zn-finger 94.6 0.12 2.7E-06 42.9 6.3 68 7-77 73-142 (493)
141 KOG2318 Uncharacterized conser 92.1 1 2.2E-05 38.8 8.1 79 6-84 172-304 (650)
142 KOG2591 c-Mpl binding protein, 91.7 0.32 7E-06 41.6 4.7 70 7-83 174-247 (684)
143 KOG4210 Nuclear localization s 91.7 0.1 2.2E-06 41.4 1.7 78 7-84 87-164 (285)
144 KOG4574 RNA-binding protein (c 91.3 0.15 3.3E-06 45.5 2.4 75 11-91 301-377 (1007)
145 PF11767 SET_assoc: Histone ly 88.9 3.7 8.1E-05 25.1 6.5 55 19-82 11-65 (66)
146 KOG4008 rRNA processing protei 85.4 0.44 9.5E-06 36.4 1.2 35 5-39 37-71 (261)
147 KOG2193 IGF-II mRNA-binding pr 83.6 0.04 8.6E-07 45.4 -5.3 76 7-85 79-154 (584)
148 KOG4410 5-formyltetrahydrofola 82.5 3.8 8.3E-05 32.4 5.3 58 8-71 330-395 (396)
149 KOG4676 Splicing factor, argin 81.8 0.17 3.6E-06 41.5 -2.4 74 9-87 152-225 (479)
150 KOG4019 Calcineurin-mediated s 80.3 1.8 3.9E-05 31.9 2.7 78 8-91 10-93 (193)
151 KOG2295 C2H2 Zn-finger protein 76.8 0.29 6.2E-06 41.8 -2.6 73 7-79 230-302 (648)
152 KOG4483 Uncharacterized conser 76.1 5.2 0.00011 33.2 4.4 54 9-69 392-446 (528)
153 KOG4454 RNA binding protein (R 75.6 0.7 1.5E-05 35.1 -0.5 67 8-75 80-150 (267)
154 PF03468 XS: XS domain; Inter 73.9 7.4 0.00016 26.6 4.2 57 9-68 9-75 (116)
155 smart00596 PRE_C2HC PRE_C2HC d 72.8 7.8 0.00017 23.9 3.6 60 23-85 2-62 (69)
156 COG0724 RNA-binding proteins ( 72.0 6.7 0.00015 29.3 4.1 58 6-63 223-280 (306)
157 PF15513 DUF4651: Domain of un 68.6 12 0.00026 22.5 3.7 18 23-40 9-26 (62)
158 PF07530 PRE_C2HC: Associated 68.4 14 0.00031 22.6 4.2 61 24-87 3-64 (68)
159 PF10567 Nab6_mRNP_bdg: RNA-re 64.9 15 0.00032 29.2 4.6 79 8-86 15-106 (309)
160 KOG4365 Uncharacterized conser 63.6 1 2.2E-05 37.6 -2.0 76 9-85 4-79 (572)
161 PF09707 Cas_Cas2CT1978: CRISP 58.4 25 0.00055 22.6 4.1 48 8-58 25-72 (86)
162 KOG2891 Surface glycoprotein [ 56.7 11 0.00023 29.9 2.6 36 7-42 148-195 (445)
163 KOG1295 Nonsense-mediated deca 51.1 27 0.00058 28.8 4.1 70 7-76 6-78 (376)
164 COG5193 LHP1 La protein, small 46.0 11 0.00024 31.3 1.2 62 8-69 174-245 (438)
165 PRK11558 putative ssRNA endonu 45.7 37 0.00081 22.4 3.4 49 8-59 27-75 (97)
166 PRK11901 hypothetical protein; 43.1 71 0.0015 25.9 5.3 63 5-72 242-306 (327)
167 PF07292 NID: Nmi/IFP 35 domai 42.6 19 0.00042 23.3 1.7 26 5-30 49-74 (88)
168 PF03439 Spt5-NGN: Early trans 41.1 92 0.002 19.7 5.1 36 34-74 33-68 (84)
169 KOG4213 RNA-binding protein La 36.7 61 0.0013 24.1 3.7 44 23-69 124-169 (205)
170 PF05189 RTC_insert: RNA 3'-te 36.4 1.2E+02 0.0027 19.7 5.5 49 10-58 12-65 (103)
171 PF00054 Laminin_G_1: Laminin 35.2 13 0.00028 25.5 0.1 10 8-17 92-101 (131)
172 PF15407 Spo7_2_N: Sporulation 32.0 32 0.00069 21.1 1.4 17 7-23 26-42 (67)
173 TIGR01873 cas_CT1978 CRISPR-as 30.9 92 0.002 20.1 3.5 49 8-59 25-74 (87)
174 PRK14548 50S ribosomal protein 30.6 1.5E+02 0.0032 19.0 4.7 57 10-69 22-80 (84)
175 TIGR03636 L23_arch archaeal ri 29.4 1.5E+02 0.0032 18.6 4.8 57 10-69 15-73 (77)
176 KOG0156 Cytochrome P450 CYP2 s 29.0 96 0.0021 26.7 4.3 62 9-80 33-97 (489)
177 PF11823 DUF3343: Protein of u 28.8 72 0.0016 19.4 2.7 27 52-78 3-29 (73)
178 PRK11634 ATP-dependent RNA hel 28.7 2.7E+02 0.0058 24.8 7.1 68 10-86 488-561 (629)
179 COG0030 KsgA Dimethyladenosine 28.6 80 0.0017 24.8 3.4 30 9-38 96-125 (259)
180 PF00398 RrnaAD: Ribosomal RNA 28.3 48 0.001 25.7 2.2 29 8-36 97-127 (262)
181 PRK11230 glycolate oxidase sub 27.4 2.4E+02 0.0053 24.3 6.5 49 22-71 203-255 (499)
182 KOG3003 Molecular chaperone of 27.2 1.4E+02 0.003 23.1 4.4 53 20-84 162-226 (236)
183 PF02714 DUF221: Domain of unk 26.8 68 0.0015 25.5 2.9 31 53-85 1-31 (325)
184 COG5584 Predicted small secret 26.1 1.6E+02 0.0035 19.4 4.0 30 15-44 29-58 (103)
185 PF14812 PBP1_TM: Transmembran 25.7 23 0.0005 22.6 0.0 16 150-165 43-58 (81)
186 KOG1832 HIV-1 Vpr-binding prot 23.6 23 0.0005 32.9 -0.4 10 14-23 1248-1257(1516)
187 KOG0226 RNA-binding proteins [ 23.5 31 0.00067 27.1 0.3 74 8-82 96-172 (290)
188 cd00027 BRCT Breast Cancer Sup 22.9 99 0.0021 17.3 2.5 27 9-35 2-28 (72)
189 PRK12280 rplW 50S ribosomal pr 22.7 1.9E+02 0.0042 20.9 4.2 33 10-42 23-57 (158)
190 PRK08559 nusG transcription an 22.4 2.9E+02 0.0063 19.5 5.9 33 35-72 36-68 (153)
191 PRK10905 cell division protein 21.2 2.4E+02 0.0052 22.9 4.9 64 5-72 244-308 (328)
192 PF07230 Peptidase_S80: Bacter 21.1 87 0.0019 27.0 2.5 26 7-32 274-302 (501)
193 PF07767 Nop53: Nop53 (60S rib 20.8 4.3E+02 0.0094 21.8 6.6 22 92-113 180-201 (387)
194 PF04026 SpoVG: SpoVG; InterP 20.7 2E+02 0.0042 18.4 3.6 25 35-59 3-27 (84)
195 PF13046 DUF3906: Protein of u 20.7 1.2E+02 0.0027 18.3 2.5 32 22-55 32-63 (64)
No 1
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2e-21 Score=143.12 Aligned_cols=159 Identities=51% Similarity=0.842 Sum_probs=123.8
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
....+|||||+|...+++..|...|-+||.|..|.++.+..++++||||||+|...++|..||..||+..+.||+|+|.+
T Consensus 7 a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~ 86 (298)
T KOG0111|consen 7 ANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNL 86 (298)
T ss_pred cccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEee
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCCccccchhHHHHHHHHHHH------HHHHHHHHH-HHHHHHHHHHhhhhhhcccCcccccCCCCC
Q 030632 85 ALPERIKGGEQGWAAQPIWADADTWFERQQQEEE------MQRLQAENR-AAMQAAEELHRKKMAEDREGEKEEDSEMKD 157 (174)
Q Consensus 85 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~e~e~~~~~~~ 157 (174)
++|.+-+.+ +..|.|.+ +.|++++.-+.. ..+.+.+.. ..+...............-+.-...-.-+-
T Consensus 87 AkP~kikeg----sqkPvWAD-DdWlkk~~g~~q~E~e~eaeK~et~s~kaa~~~pqv~~~ikig~~~~Gri~~~lrtdv 161 (298)
T KOG0111|consen 87 AKPEKIKEG----SQKPVWAD-DDWLKKQQGEAQAEKEIEAEKAETESKKAAMENPQVYHDIKIGEDRAGRIVMLLRTDV 161 (298)
T ss_pred cCCccccCC----CCCCcccC-cHHHHHhccccccccccchhhhcCccchhhhhChHhhhheeecccccceEEEeecccC
Confidence 999877654 45999999 999999872111 112222222 222233333334444444455555666677
Q ss_pred ChhhHHHHHHh
Q 030632 158 DPMARAEAEVL 168 (174)
Q Consensus 158 ~~~~~~~~~~~ 168 (174)
.||.......|
T Consensus 162 ~Pmtaenfr~L 172 (298)
T KOG0111|consen 162 VPMTAENFRCL 172 (298)
T ss_pred Chhhhhhhhhh
Confidence 88888777665
No 2
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.84 E-value=9e-20 Score=129.91 Aligned_cols=86 Identities=38% Similarity=0.616 Sum_probs=80.7
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
...+++|||+|||+.+++.+|+.+|.+||.|..|.++.++.++.++|||||+|.+.++|..||..||+..|.|++|+|.+
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 34578999999999999999999999999999999999998999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 030632 85 ALPERI 90 (174)
Q Consensus 85 a~~~~~ 90 (174)
+.++..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 976543
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.79 E-value=1.3e-18 Score=140.38 Aligned_cols=83 Identities=28% Similarity=0.500 Sum_probs=78.6
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
.+.+|||+|||+.+++.+|+.+|++||.|..|+|++++.+|.++|||||.|.+.++|..||..|||..|.|+.|+|.|+.
T Consensus 268 ~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~ 347 (352)
T TIGR01661 268 AGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNRVLQVSFKT 347 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q 030632 87 PER 89 (174)
Q Consensus 87 ~~~ 89 (174)
.+.
T Consensus 348 ~~~ 350 (352)
T TIGR01661 348 NKA 350 (352)
T ss_pred CCC
Confidence 653
No 4
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.77 E-value=7.3e-19 Score=143.79 Aligned_cols=85 Identities=27% Similarity=0.458 Sum_probs=78.9
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
.+.++|+|+|||+.|...+|+.+|+.||.|..|.|++.+ .|+.+|||||.|....+|..|++.||+..|.||+|.|.||
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~-dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWA 193 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKK-DGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWA 193 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCC-CCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeee
Confidence 357899999999999999999999999999999999888 6667799999999999999999999999999999999999
Q ss_pred cCCCCC
Q 030632 86 LPERIK 91 (174)
Q Consensus 86 ~~~~~~ 91 (174)
.++..+
T Consensus 194 V~Kd~y 199 (678)
T KOG0127|consen 194 VDKDTY 199 (678)
T ss_pred cccccc
Confidence 877554
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.75 E-value=5.9e-18 Score=136.66 Aligned_cols=84 Identities=27% Similarity=0.504 Sum_probs=80.2
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
+.++|||+|||+.+++.+|+.+|+.||+|..|.|++++.+|.++|||||+|.+.++|.+||..|||..|.|++|.|.++.
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~ 81 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYAR 81 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeec
Confidence 57899999999999999999999999999999999998899999999999999999999999999999999999999998
Q ss_pred CCCC
Q 030632 87 PERI 90 (174)
Q Consensus 87 ~~~~ 90 (174)
|...
T Consensus 82 ~~~~ 85 (352)
T TIGR01661 82 PSSD 85 (352)
T ss_pred cccc
Confidence 7654
No 6
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.74 E-value=1.6e-17 Score=124.16 Aligned_cols=83 Identities=31% Similarity=0.509 Sum_probs=80.0
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
...++|-|.|||..+++.+|..+|.+||.|..|.|.+++.||.++|||||.|.++++|.+||..|||+-+.+-.|+|.|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q 030632 86 LPE 88 (174)
Q Consensus 86 ~~~ 88 (174)
+|+
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 986
No 7
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=2.3e-17 Score=132.83 Aligned_cols=85 Identities=26% Similarity=0.375 Sum_probs=80.2
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
....++|||+|||+.+++++|+.+|..||.|..|.|++++.+++++|||||+|.+.++|.+||..||+..|.+++|+|.+
T Consensus 104 ~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~ 183 (346)
T TIGR01659 104 NNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSY 183 (346)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeec
Confidence 34678999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred ecCCC
Q 030632 85 ALPER 89 (174)
Q Consensus 85 a~~~~ 89 (174)
+.+..
T Consensus 184 a~p~~ 188 (346)
T TIGR01659 184 ARPGG 188 (346)
T ss_pred ccccc
Confidence 87643
No 8
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.73 E-value=2.7e-17 Score=102.48 Aligned_cols=70 Identities=34% Similarity=0.656 Sum_probs=66.8
Q ss_pred EEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEE
Q 030632 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLT 81 (174)
Q Consensus 11 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~ 81 (174)
|||+|||+.+++.+|+.+|+.||.|..+.+..+ .++..+|+|||.|.+.++|..|+..|+|..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999887 4889999999999999999999999999999999986
No 9
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.71 E-value=2.4e-17 Score=112.08 Aligned_cols=81 Identities=26% Similarity=0.443 Sum_probs=76.8
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
..++|||||||++.++++.|.++|+.+|.|..|.+-.++.+..+.|||||.|.+.++|..|++.++|+.+..++|+|.|-
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D 113 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWD 113 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeecc
Confidence 35789999999999999999999999999999999888888889999999999999999999999999999999999985
Q ss_pred c
Q 030632 86 L 86 (174)
Q Consensus 86 ~ 86 (174)
-
T Consensus 114 ~ 114 (153)
T KOG0121|consen 114 A 114 (153)
T ss_pred c
Confidence 4
No 10
>PLN03213 repressor of silencing 3; Provisional
Probab=99.69 E-value=2.5e-16 Score=128.01 Aligned_cols=91 Identities=25% Similarity=0.370 Sum_probs=80.1
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCH--HHHHHHHHhcCCceecCeEEEEE
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEK--EDAIQAMDNMDGAELYGRVLTVN 83 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~--~~a~~al~~l~g~~~~g~~l~V~ 83 (174)
..+.+||||||++.+++.+|+.+|+.||.|..|.|++. +| ||||||+|... ..+.+||..|||..+.|+.|+|.
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRE--TG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVN 83 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRT--KG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLE 83 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecc--cC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEe
Confidence 45679999999999999999999999999999999944 66 99999999987 78999999999999999999999
Q ss_pred eecCCCCCCCCCCCCCCccccchhHHHHHHHHHHHHH
Q 030632 84 YALPERIKGGEQGWAAQPIWADADTWFERQQQEEEMQ 120 (174)
Q Consensus 84 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (174)
.|+ ..|+.+.+++....
T Consensus 84 KAK--------------------P~YLeRLkrEReea 100 (759)
T PLN03213 84 KAK--------------------EHYLARLKREWEAA 100 (759)
T ss_pred ecc--------------------HHHHHHHHHHHHHh
Confidence 986 56777776655443
No 11
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.66 E-value=5e-16 Score=131.93 Aligned_cols=82 Identities=21% Similarity=0.428 Sum_probs=78.0
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
..++|||+|||+.+++++|+.+|+.||.|..|.|++++.++.++|||||.|.+.++|..||..||+..|+|+.|+|.++.
T Consensus 203 ~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi 282 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 282 (612)
T ss_pred ccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecC
Confidence 35799999999999999999999999999999999999889999999999999999999999999999999999999987
Q ss_pred CC
Q 030632 87 PE 88 (174)
Q Consensus 87 ~~ 88 (174)
+.
T Consensus 283 ~p 284 (612)
T TIGR01645 283 TP 284 (612)
T ss_pred CC
Confidence 53
No 12
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.66 E-value=9.6e-16 Score=95.89 Aligned_cols=70 Identities=31% Similarity=0.563 Sum_probs=64.8
Q ss_pred EEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEE
Q 030632 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLT 81 (174)
Q Consensus 11 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~ 81 (174)
|||+|||+.++..+|..+|..||.|..+.+..++. +..+|+|||+|.+.++|..|+..+++..|+|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999885 88999999999999999999999999999999874
No 13
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=5e-16 Score=110.94 Aligned_cols=80 Identities=25% Similarity=0.441 Sum_probs=73.4
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
+-.++||||||+..++..+|..+|..||.|..|.|-.+ +.|||||+|.++.+|..|+..|+|..|.|..|+|..+
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S 82 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELS 82 (195)
T ss_pred CCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEee
Confidence 34789999999999999999999999999999988665 4799999999999999999999999999999999998
Q ss_pred cCCCC
Q 030632 86 LPERI 90 (174)
Q Consensus 86 ~~~~~ 90 (174)
.....
T Consensus 83 ~G~~r 87 (195)
T KOG0107|consen 83 TGRPR 87 (195)
T ss_pred cCCcc
Confidence 76544
No 14
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.65 E-value=8.3e-16 Score=117.54 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=70.6
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
.++|||+|||+.+++.+|+.+|+.||.|..|.|+.++ ..+|||||+|.+...|..||. |||..|.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~---~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSEN---ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecC---CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 5799999999999999999999999999999998875 357999999999999999995 999999999999999863
No 15
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.64 E-value=7.1e-16 Score=130.98 Aligned_cols=81 Identities=36% Similarity=0.556 Sum_probs=76.7
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
...++|||||||+.+++.+|+.+|.+||.|.+|.++.++.+|+++|||||+|.+.+.|.+|+..|||..|.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34679999999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred c
Q 030632 86 L 86 (174)
Q Consensus 86 ~ 86 (174)
.
T Consensus 185 ~ 185 (612)
T TIGR01645 185 S 185 (612)
T ss_pred c
Confidence 3
No 16
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.64 E-value=1.7e-15 Score=122.05 Aligned_cols=82 Identities=27% Similarity=0.403 Sum_probs=76.3
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecC--eEEEEEe
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYG--RVLTVNY 84 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g--~~l~V~~ 84 (174)
..++|||+|||+.+++++|+.+|++||.|..|.|++++.++.++|||||+|.+.++|.+||..||+..+.+ ++|+|.+
T Consensus 192 ~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~ 271 (346)
T TIGR01659 192 KDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRL 271 (346)
T ss_pred ccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 46789999999999999999999999999999999998899999999999999999999999999998865 7899999
Q ss_pred ecCC
Q 030632 85 ALPE 88 (174)
Q Consensus 85 a~~~ 88 (174)
+...
T Consensus 272 a~~~ 275 (346)
T TIGR01659 272 AEEH 275 (346)
T ss_pred CCcc
Confidence 8753
No 17
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.64 E-value=4.2e-17 Score=117.12 Aligned_cols=80 Identities=29% Similarity=0.590 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
.+.-|||||||+..|+.+|.-+|++||.|..|.++++..||+++||||+.|.+..+...|+..|||..|.||.|+|....
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~ 113 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVS 113 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeeecc
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999998753
No 18
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=2.9e-15 Score=116.24 Aligned_cols=80 Identities=29% Similarity=0.430 Sum_probs=74.5
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
-.++|+|.|||+.+.+-||+.+|.+||.|.+|.|+.+ ...++|||||+|.+.++|.+|-..|||..+.||+|.|..+.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfN--ERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFN--ERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEec--cCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccc
Confidence 3579999999999999999999999999999998877 45689999999999999999999999999999999999987
Q ss_pred CC
Q 030632 87 PE 88 (174)
Q Consensus 87 ~~ 88 (174)
++
T Consensus 173 ar 174 (376)
T KOG0125|consen 173 AR 174 (376)
T ss_pred hh
Confidence 65
No 19
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=6.8e-16 Score=114.97 Aligned_cols=78 Identities=32% Similarity=0.500 Sum_probs=71.3
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
-++||||||+|.+..+.|+.+|.+||.|.+..|+.++.+|+++|||||+|.+.+.|.+|++- ..-.|.||+..+..|.
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 45899999999999999999999999999999999999999999999999999999999986 4467899998777653
No 20
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.62 E-value=4.3e-15 Score=125.49 Aligned_cols=82 Identities=22% Similarity=0.338 Sum_probs=77.6
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
+.++|||+|||+.+++.+|+.+|..||.|..+.|+.++.+|.++|||||+|.+...|..||..|||..|.|+.|.|.++.
T Consensus 294 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~ 373 (509)
T TIGR01642 294 SKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRAC 373 (509)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECc
Confidence 45799999999999999999999999999999999998899999999999999999999999999999999999999986
Q ss_pred CC
Q 030632 87 PE 88 (174)
Q Consensus 87 ~~ 88 (174)
..
T Consensus 374 ~~ 375 (509)
T TIGR01642 374 VG 375 (509)
T ss_pred cC
Confidence 43
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.62 E-value=3.4e-15 Score=124.56 Aligned_cols=80 Identities=41% Similarity=0.679 Sum_probs=76.8
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
..++|||+|||+.+++.+|+.+|+.||.|..|.++.++.+|.++|||||+|.+.+.|..|+..|||..|.|++|.|.|+.
T Consensus 185 ~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~ 264 (457)
T TIGR01622 185 NFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQ 264 (457)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEcc
Confidence 36899999999999999999999999999999999998888999999999999999999999999999999999999976
No 22
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=3.9e-15 Score=112.99 Aligned_cols=79 Identities=28% Similarity=0.565 Sum_probs=73.8
Q ss_pred CCCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEE
Q 030632 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVN 83 (174)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~ 83 (174)
+++.+++||||||+.-++++.|+..|++||.|.+|++..+ +||+||.|.+.+.|..||..+|+..|.|..+++.
T Consensus 160 ssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCs 233 (321)
T KOG0148|consen 160 SSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCS 233 (321)
T ss_pred CCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHHHHHHhcCceeCceEEEEe
Confidence 4677899999999999999999999999999999999866 5899999999999999999999999999999999
Q ss_pred eecCC
Q 030632 84 YALPE 88 (174)
Q Consensus 84 ~a~~~ 88 (174)
|.+..
T Consensus 234 WGKe~ 238 (321)
T KOG0148|consen 234 WGKEG 238 (321)
T ss_pred ccccC
Confidence 98743
No 23
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=4.9e-15 Score=113.72 Aligned_cols=82 Identities=26% Similarity=0.433 Sum_probs=78.3
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
.|-+||||+.|+..+++..|+..|..||.|..|.|+++..||+++|||||+|....+...|.+..+|..|.|+.|.|.+-
T Consensus 99 DPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvE 178 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVE 178 (335)
T ss_pred CccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEec
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred cC
Q 030632 86 LP 87 (174)
Q Consensus 86 ~~ 87 (174)
..
T Consensus 179 Rg 180 (335)
T KOG0113|consen 179 RG 180 (335)
T ss_pred cc
Confidence 43
No 24
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.60 E-value=5.8e-15 Score=126.25 Aligned_cols=78 Identities=32% Similarity=0.558 Sum_probs=75.3
Q ss_pred EEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 10 TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 10 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
+|||||||+++++.+|+.+|+.||.|..|+|.++..+++++|||||+|.+.++|.+|+..||+..|.|+.|+|.|+..
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~ 79 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQR 79 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecccc
Confidence 799999999999999999999999999999999998899999999999999999999999999999999999999864
No 25
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.60 E-value=7.2e-15 Score=111.16 Aligned_cols=116 Identities=22% Similarity=0.335 Sum_probs=95.1
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
...++|+|.-||..+|.++|+.+|...|+|.+|.+++++.+|.+.||+||.|..+.+|++|+..|||..+..++|+|.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyA 118 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYA 118 (360)
T ss_pred cccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEec
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCC-----CCCCCCccccchhHHHHHHHHHHHHHH
Q 030632 86 LPERIKGGE-----QGWAAQPIWADADTWFERQQQEEEMQR 121 (174)
Q Consensus 86 ~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (174)
+|....-.. .+........+.+..+..+.+--..+-
T Consensus 119 RPSs~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRi 159 (360)
T KOG0145|consen 119 RPSSDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRI 159 (360)
T ss_pred cCChhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhh
Confidence 987653222 223333344455566666665544333
No 26
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.59 E-value=2.4e-15 Score=108.12 Aligned_cols=83 Identities=41% Similarity=0.620 Sum_probs=79.5
Q ss_pred CCCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEE
Q 030632 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVN 83 (174)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~ 83 (174)
..+...|||||||+..+++..|.++|-+.|+|..+.+++++.+...+||||++|.+.++|.-|++.||...+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 45677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eec
Q 030632 84 YAL 86 (174)
Q Consensus 84 ~a~ 86 (174)
.+.
T Consensus 85 kas 87 (203)
T KOG0131|consen 85 KAS 87 (203)
T ss_pred ecc
Confidence 886
No 27
>smart00362 RRM_2 RNA recognition motif.
Probab=99.59 E-value=1.4e-14 Score=89.66 Aligned_cols=72 Identities=43% Similarity=0.701 Sum_probs=67.2
Q ss_pred EEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEE
Q 030632 10 TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVN 83 (174)
Q Consensus 10 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~ 83 (174)
+|||+|||+.++..+|+.+|..||.|..+.+..++ +.++|+|||+|.+...|..|+..+++..+.|++|.|.
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 58999999999999999999999999999988775 6788999999999999999999999999999998873
No 28
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.59 E-value=4.1e-15 Score=102.18 Aligned_cols=84 Identities=27% Similarity=0.533 Sum_probs=79.4
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
.++.|||.++...+++++|...|..||.|+.+.+..++.||..+|||+|+|.+...|+.|+..|||..|.|.+|.|.|+.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~F 150 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCF 150 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEE
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q 030632 87 PERI 90 (174)
Q Consensus 87 ~~~~ 90 (174)
.+.+
T Consensus 151 v~gp 154 (170)
T KOG0130|consen 151 VKGP 154 (170)
T ss_pred ecCC
Confidence 5443
No 29
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.58 E-value=1.5e-14 Score=109.24 Aligned_cols=77 Identities=18% Similarity=0.134 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
+.+++|||+||++.+++.+|+.+|+.||.|..|.|+++. ...|||||+|.+...+..|+ .|+|..|.+++|.|...
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~ 78 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRW 78 (243)
T ss_pred CCceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeC
Confidence 457899999999999999999999999999999999874 45589999999999999999 58999999999999764
Q ss_pred c
Q 030632 86 L 86 (174)
Q Consensus 86 ~ 86 (174)
.
T Consensus 79 ~ 79 (243)
T PLN03121 79 G 79 (243)
T ss_pred c
Confidence 3
No 30
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.58 E-value=1.1e-14 Score=124.62 Aligned_cols=82 Identities=35% Similarity=0.503 Sum_probs=77.1
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
..+++|||+||++.+++++|+.+|+.||.|..|.++.+. +|.++|||||.|.+.++|.+|+..|||..|.|++|.|.++
T Consensus 283 ~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~-~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a 361 (562)
T TIGR01628 283 AQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDE-KGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALA 361 (562)
T ss_pred cCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECC-CCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEec
Confidence 456789999999999999999999999999999999984 8999999999999999999999999999999999999998
Q ss_pred cCC
Q 030632 86 LPE 88 (174)
Q Consensus 86 ~~~ 88 (174)
..+
T Consensus 362 ~~k 364 (562)
T TIGR01628 362 QRK 364 (562)
T ss_pred cCc
Confidence 754
No 31
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.57 E-value=8.4e-15 Score=111.18 Aligned_cols=82 Identities=37% Similarity=0.618 Sum_probs=78.2
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
...+||+-|.+.++-+.|+..|.+||.|..++|+++..|++++||+||.|....+|+.||..|||.-|++|.|+-.||..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CC
Q 030632 88 ER 89 (174)
Q Consensus 88 ~~ 89 (174)
+.
T Consensus 142 Kp 143 (321)
T KOG0148|consen 142 KP 143 (321)
T ss_pred Cc
Confidence 54
No 32
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.57 E-value=5e-14 Score=92.62 Aligned_cols=78 Identities=26% Similarity=0.423 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
++-|||+|||+++|.++...+|.+||.|..|+|-..+ ..+|-|||+|.+..+|.+|+.+|+|..+.++.|.|-+..|
T Consensus 18 nriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k---~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 18 NRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTK---ETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred heeEEEecCCccccHHHHHHHhhcccceEEEEecCcc---CcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 5789999999999999999999999999999985543 5689999999999999999999999999999999998754
Q ss_pred C
Q 030632 88 E 88 (174)
Q Consensus 88 ~ 88 (174)
.
T Consensus 95 ~ 95 (124)
T KOG0114|consen 95 E 95 (124)
T ss_pred H
Confidence 3
No 33
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.57 E-value=1.8e-14 Score=120.25 Aligned_cols=80 Identities=26% Similarity=0.443 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
+.++|||+|||+.+++.+|+.+|+.||.|..|.|+.++.++.++|||||+|.+.++|.+||. |+|..|.|++|.|.++.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~ 166 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQ 166 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecc
Confidence 46799999999999999999999999999999999998899999999999999999999996 89999999999998865
Q ss_pred C
Q 030632 87 P 87 (174)
Q Consensus 87 ~ 87 (174)
.
T Consensus 167 ~ 167 (457)
T TIGR01622 167 A 167 (457)
T ss_pred h
Confidence 4
No 34
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.57 E-value=1.3e-14 Score=116.55 Aligned_cols=84 Identities=26% Similarity=0.460 Sum_probs=78.9
Q ss_pred CCCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceec-CeEEEE
Q 030632 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELY-GRVLTV 82 (174)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~-g~~l~V 82 (174)
.++.++-||||.||..+.+.+|.-+|.+.|.|-.++|+.++.+|.+||||||+|.+.+.|+.||+.||++.|. |+.|.|
T Consensus 79 ~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igv 158 (506)
T KOG0117|consen 79 PPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGV 158 (506)
T ss_pred CCCCCceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEE
Confidence 4567899999999999999999999999999999999999999999999999999999999999999999987 899999
Q ss_pred EeecC
Q 030632 83 NYALP 87 (174)
Q Consensus 83 ~~a~~ 87 (174)
+.+..
T Consensus 159 c~Sva 163 (506)
T KOG0117|consen 159 CVSVA 163 (506)
T ss_pred EEeee
Confidence 88753
No 35
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.57 E-value=3.8e-15 Score=109.11 Aligned_cols=78 Identities=40% Similarity=0.562 Sum_probs=75.6
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
.+|-|-||.+-++.++|+.+|.+||.|-.|.|++++.|+.++|||||.|....+|+.|+..|+|..|.|+.|+|.+|+
T Consensus 14 ~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 14 TSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred eeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 578999999999999999999999999999999999999999999999999999999999999999999999998876
No 36
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.55 E-value=1.7e-14 Score=122.39 Aligned_cols=81 Identities=27% Similarity=0.452 Sum_probs=73.9
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceec-CeEEEEE
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELY-GRVLTVN 83 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~-g~~l~V~ 83 (174)
+...++|||+|||+.+++++|+.+|++||.|..|+|+++ .+|.++|||||+|.+.++|.+||..||+..|. |+.|.|.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D-~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~ 133 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMD-FSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVC 133 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEEC-CCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCcccccc
Confidence 344689999999999999999999999999999999999 59999999999999999999999999999886 7888777
Q ss_pred eec
Q 030632 84 YAL 86 (174)
Q Consensus 84 ~a~ 86 (174)
++.
T Consensus 134 ~S~ 136 (578)
T TIGR01648 134 ISV 136 (578)
T ss_pred ccc
Confidence 654
No 37
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.55 E-value=2.9e-14 Score=109.52 Aligned_cols=80 Identities=43% Similarity=0.645 Sum_probs=76.7
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
.++|||+|||+.+++.+|+.+|..||.|..+.+..++.++.++|||||.|.+...|..|+..++|..|.|++|.|.++.+
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 59999999999999999999999999999999999988999999999999999999999999999999999999999653
No 38
>smart00360 RRM RNA recognition motif.
Probab=99.53 E-value=5.1e-14 Score=86.68 Aligned_cols=71 Identities=41% Similarity=0.649 Sum_probs=66.5
Q ss_pred EcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEE
Q 030632 13 VGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVN 83 (174)
Q Consensus 13 V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~ 83 (174)
|+|||..++..+|+.+|..||.|..+.+..++.++.++|+|||+|.+.+.|..|+..|++..+.|+.|.|.
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 68999999999999999999999999998887778899999999999999999999999999999998873
No 39
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.53 E-value=5.9e-15 Score=118.14 Aligned_cols=86 Identities=29% Similarity=0.476 Sum_probs=78.3
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCce-ec--CeEEEEE
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAE-LY--GRVLTVN 83 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~-~~--g~~l~V~ 83 (174)
..++||||.|+..+++.+++.+|++||.|..|.|.+++ .+.+||||||.|.+++.|..||+.|||.. +. ..+|.|+
T Consensus 123 ~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVk 201 (510)
T KOG0144|consen 123 EERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVK 201 (510)
T ss_pred cchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEE
Confidence 46789999999999999999999999999999999998 88999999999999999999999999964 44 5789999
Q ss_pred eecCCCCCCC
Q 030632 84 YALPERIKGG 93 (174)
Q Consensus 84 ~a~~~~~~~~ 93 (174)
||.+++.+..
T Consensus 202 FADtqkdk~~ 211 (510)
T KOG0144|consen 202 FADTQKDKDG 211 (510)
T ss_pred ecccCCCchH
Confidence 9998876643
No 40
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=6e-14 Score=101.34 Aligned_cols=80 Identities=25% Similarity=0.440 Sum_probs=72.2
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
...++|||||||..+.+.+|..+|.+||.|..|.|...+ ...+||||+|.+..+|+.||..-+|+.+.|.+|+|.++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999999999886543 35679999999999999999999999999999999998
Q ss_pred cCC
Q 030632 86 LPE 88 (174)
Q Consensus 86 ~~~ 88 (174)
..-
T Consensus 81 rgg 83 (241)
T KOG0105|consen 81 RGG 83 (241)
T ss_pred cCC
Confidence 643
No 41
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=1.4e-13 Score=104.21 Aligned_cols=82 Identities=33% Similarity=0.517 Sum_probs=78.0
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
+..++.|||-||.+.+.+.-|..+|.+||.|..|.++++..+.+.+||+||++.+.++|..||..|||+.+.++.|.|.+
T Consensus 275 ~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQVsF 354 (360)
T KOG0145|consen 275 PGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF 354 (360)
T ss_pred CCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEEEE
Confidence 44578999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ec
Q 030632 85 AL 86 (174)
Q Consensus 85 a~ 86 (174)
..
T Consensus 355 Kt 356 (360)
T KOG0145|consen 355 KT 356 (360)
T ss_pred ec
Confidence 64
No 42
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.51 E-value=1.2e-13 Score=116.21 Aligned_cols=78 Identities=23% Similarity=0.388 Sum_probs=71.9
Q ss_pred CCCCEEEEcCCCC-CChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 6 VQKNTLYVGGLAE-EVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 6 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
+++++|||+|||+ .+++.+|+.+|+.||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.|++|+|.+
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~-----~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~ 347 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK-----KETALIEMADPYQAQLALTHLNGVKLFGKPLRVCP 347 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEE
Confidence 4678999999998 69999999999999999999998753 69999999999999999999999999999999999
Q ss_pred ecCC
Q 030632 85 ALPE 88 (174)
Q Consensus 85 a~~~ 88 (174)
++..
T Consensus 348 s~~~ 351 (481)
T TIGR01649 348 SKQQ 351 (481)
T ss_pred cccc
Confidence 8653
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.50 E-value=2.3e-13 Score=84.51 Aligned_cols=74 Identities=39% Similarity=0.690 Sum_probs=68.3
Q ss_pred EEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 10 TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 10 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
+|||+|||+.++..+|+.+|..||.|..+.+..++. +..+|+|||.|.+.+.|..|+..+++..+.|+.|.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~-~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKD-TKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCC-CCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999999999999999999999999999988763 36789999999999999999999999999999999864
No 44
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.50 E-value=4e-14 Score=116.15 Aligned_cols=82 Identities=34% Similarity=0.564 Sum_probs=78.5
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecCC
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALPE 88 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~~ 88 (174)
+.|||||+|+.++++.|..+|+..|.|..++++.++.+|+.+||||++|.+.+.|..|++.|||..+.|++|+|.|+.-.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998644
Q ss_pred CC
Q 030632 89 RI 90 (174)
Q Consensus 89 ~~ 90 (174)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 33
No 45
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=5.2e-14 Score=110.50 Aligned_cols=86 Identities=26% Similarity=0.368 Sum_probs=81.8
Q ss_pred CCCCCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEE
Q 030632 2 ANLAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLT 81 (174)
Q Consensus 2 ~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~ 81 (174)
|...||.+.|||+.|.|-++.++|.-+|+.||.|.+|.+++++.||.+..||||+|.+.++|++|.-.|.+..|..++|+
T Consensus 233 Ad~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIH 312 (479)
T KOG0415|consen 233 ADVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIH 312 (479)
T ss_pred cccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEE
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecC
Q 030632 82 VNYALP 87 (174)
Q Consensus 82 V~~a~~ 87 (174)
|.++..
T Consensus 313 VDFSQS 318 (479)
T KOG0415|consen 313 VDFSQS 318 (479)
T ss_pred eehhhh
Confidence 998753
No 46
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.46 E-value=3.3e-13 Score=113.50 Aligned_cols=76 Identities=25% Similarity=0.301 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhc--CCceecCeEEEEEe
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM--DGAELYGRVLTVNY 84 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l--~g~~~~g~~l~V~~ 84 (174)
|+++|||+|||+.+++.+|+.+|++||.|..|.++. .+|||||+|.+.++|.+|+..| ++..|.|++|.|.|
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~------~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~ 74 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLP------GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNY 74 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEEC------CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEe
Confidence 578999999999999999999999999999999874 3589999999999999999864 78899999999999
Q ss_pred ecCC
Q 030632 85 ALPE 88 (174)
Q Consensus 85 a~~~ 88 (174)
+.++
T Consensus 75 s~~~ 78 (481)
T TIGR01649 75 STSQ 78 (481)
T ss_pred cCCc
Confidence 8754
No 47
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.46 E-value=3.9e-13 Score=114.08 Aligned_cols=76 Identities=37% Similarity=0.639 Sum_probs=70.1
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccC--CCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPF--GDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~--G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
..++|||+|||+.+++++|+.+|+.| |.|..|.++ ++||||+|.+.++|.+|+..||+..|.|+.|+|.|
T Consensus 232 ~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~ 303 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTL 303 (578)
T ss_pred cccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 35789999999999999999999999 999998764 46999999999999999999999999999999999
Q ss_pred ecCCCC
Q 030632 85 ALPERI 90 (174)
Q Consensus 85 a~~~~~ 90 (174)
++|...
T Consensus 304 Akp~~~ 309 (578)
T TIGR01648 304 AKPVDK 309 (578)
T ss_pred ccCCCc
Confidence 988644
No 48
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.46 E-value=5.9e-14 Score=110.67 Aligned_cols=75 Identities=39% Similarity=0.631 Sum_probs=73.5
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEE
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVN 83 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~ 83 (174)
++||||.|.+.+.++.|+..|.+||+|++|.+..++.|++++|||||+|.-++.|+.|++.|||..++||.|+|.
T Consensus 114 cRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVg 188 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVG 188 (544)
T ss_pred HheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCcccccc
Confidence 689999999999999999999999999999999999999999999999999999999999999999999999997
No 49
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=1.1e-13 Score=105.11 Aligned_cols=86 Identities=30% Similarity=0.491 Sum_probs=81.7
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
.+.+|+|||-.||..+...+|..+|-+||.|.+.++..++.|+.+++|+||.|.++.+++.||..|||..|+-++|+|..
T Consensus 282 GPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQL 361 (371)
T KOG0146|consen 282 GPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQL 361 (371)
T ss_pred CCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhh
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q 030632 85 ALPERI 90 (174)
Q Consensus 85 a~~~~~ 90 (174)
.+|+..
T Consensus 362 KRPkda 367 (371)
T KOG0146|consen 362 KRPKDA 367 (371)
T ss_pred cCcccc
Confidence 887753
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.44 E-value=2.5e-13 Score=111.66 Aligned_cols=83 Identities=29% Similarity=0.424 Sum_probs=78.5
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
.+.||||++||+.++..+|..+|+.+|+|..|.++.++.++.+|||+||+|...++++.|+..+++..|.|+.|+|..+.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 34899999999999999999999999999999999999899999999999999999999999999999999999999987
Q ss_pred CCC
Q 030632 87 PER 89 (174)
Q Consensus 87 ~~~ 89 (174)
++.
T Consensus 84 ~R~ 86 (678)
T KOG0127|consen 84 KRA 86 (678)
T ss_pred ccc
Confidence 643
No 51
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.42 E-value=1.4e-12 Score=78.05 Aligned_cols=56 Identities=39% Similarity=0.696 Sum_probs=50.7
Q ss_pred HHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 25 LHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 25 L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
|..+|++||.|..+.+..+. +++|||+|.+.++|..|+..|||..+.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~-----~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK-----RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS-----TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999987553 689999999999999999999999999999999986
No 52
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.39 E-value=1.3e-12 Score=97.15 Aligned_cols=83 Identities=31% Similarity=0.511 Sum_probs=74.1
Q ss_pred CCCCCEEEEcCCCCCChHHHHHH----hcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEE
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHA----AFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVL 80 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~----~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l 80 (174)
.++..||||.||+..+..++|+. +|++||.|..|.... +.+.+|-|||.|.+...|-.|+..|+|..+.|+++
T Consensus 6 ~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~m 82 (221)
T KOG4206|consen 6 VNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPM 82 (221)
T ss_pred cCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchh
Confidence 35566999999999999988777 999999999987754 56899999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q 030632 81 TVNYALPERI 90 (174)
Q Consensus 81 ~V~~a~~~~~ 90 (174)
+|.||+....
T Consensus 83 riqyA~s~sd 92 (221)
T KOG4206|consen 83 RIQYAKSDSD 92 (221)
T ss_pred heecccCccc
Confidence 9999986544
No 53
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.38 E-value=7.2e-13 Score=108.99 Aligned_cols=79 Identities=39% Similarity=0.730 Sum_probs=74.8
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
.+||||||.+++++..|+.+|.+||.|..|.++.+..+|.++|||||+|.+.+.|.+|+..|||..|-|+.|+|.....
T Consensus 279 ~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~ 357 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTE 357 (549)
T ss_pred hhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeee
Confidence 3499999999999999999999999999999999988999999999999999999999999999999999999987653
No 54
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.38 E-value=8.3e-13 Score=105.97 Aligned_cols=84 Identities=21% Similarity=0.403 Sum_probs=75.6
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceec---CeEEEEEe
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELY---GRVLTVNY 84 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~---g~~l~V~~ 84 (174)
.-++|||-||..+++.+|+.+|.+||.|.+|.|++++.++.++|||||.|.++.+|.+|+..||....- ..+|.|++
T Consensus 34 ~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~ 113 (510)
T KOG0144|consen 34 AVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKY 113 (510)
T ss_pred hhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecc
Confidence 347999999999999999999999999999999999999999999999999999999999999886543 47789999
Q ss_pred ecCCCCC
Q 030632 85 ALPERIK 91 (174)
Q Consensus 85 a~~~~~~ 91 (174)
+...+.+
T Consensus 114 Ad~E~er 120 (510)
T KOG0144|consen 114 ADGERER 120 (510)
T ss_pred cchhhhc
Confidence 8766554
No 55
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.37 E-value=1.1e-12 Score=94.39 Aligned_cols=89 Identities=33% Similarity=0.510 Sum_probs=80.5
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEE-EEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDV-KTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v-~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
..+.+|||+||.+.+.+..|...|+.||.+... .+++++.+|.++|||||.|.+.+.+.+|+..|||..+.+++|+|.+
T Consensus 94 ~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~y 173 (203)
T KOG0131|consen 94 DVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSY 173 (203)
T ss_pred cccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEE
Confidence 346799999999999999999999999988664 7888888999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCC
Q 030632 85 ALPERIKGGE 94 (174)
Q Consensus 85 a~~~~~~~~~ 94 (174)
+..+..++.+
T Consensus 174 a~k~~~kg~~ 183 (203)
T KOG0131|consen 174 AFKKDTKGER 183 (203)
T ss_pred EEecCCCccc
Confidence 9877666543
No 56
>smart00361 RRM_1 RNA recognition motif.
Probab=99.37 E-value=2.9e-12 Score=80.28 Aligned_cols=61 Identities=23% Similarity=0.446 Sum_probs=54.2
Q ss_pred HHHHHHhcc----cCCCeeEEE-EecCCCC--CCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEE
Q 030632 22 EAILHAAFI----PFGDIKDVK-TPLDQAT--QKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTV 82 (174)
Q Consensus 22 ~~~L~~~F~----~~G~i~~v~-~~~~~~~--~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V 82 (174)
+.+|+.+|+ .||.|..+. ++.++.+ +.++|||||.|.+.++|.+|+..|||..+.|++|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 457888888 999999995 6665545 889999999999999999999999999999999986
No 57
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.32 E-value=7.4e-12 Score=91.89 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccC-CCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPF-GDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
...-+||+.+|.-+.+..+..+|.+| |.+..+++.+++.||.++|||||+|.+.+.|..|.+.||++.|.++.|.|.+-
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vm 127 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVM 127 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEe
Confidence 45678999999999999999999998 78888888899999999999999999999999999999999999999999987
Q ss_pred cCC
Q 030632 86 LPE 88 (174)
Q Consensus 86 ~~~ 88 (174)
.|.
T Consensus 128 ppe 130 (214)
T KOG4208|consen 128 PPE 130 (214)
T ss_pred Cch
Confidence 765
No 58
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=99.31 E-value=3.5e-12 Score=105.70 Aligned_cols=81 Identities=25% Similarity=0.458 Sum_probs=76.0
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
.-+++|||.+|+..+...+|+.+|++||.|....++++-.+...+||+||++.+...|.+||..||.+.|+|+.|.|..+
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEka 482 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKA 482 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeec
Confidence 34689999999999999999999999999999999998878888999999999999999999999999999999999887
Q ss_pred c
Q 030632 86 L 86 (174)
Q Consensus 86 ~ 86 (174)
+
T Consensus 483 K 483 (940)
T KOG4661|consen 483 K 483 (940)
T ss_pred c
Confidence 5
No 59
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.28 E-value=8.3e-12 Score=95.90 Aligned_cols=74 Identities=26% Similarity=0.448 Sum_probs=68.7
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecCC
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALPE 88 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~~ 88 (174)
..|||||||..+++..|+.+|.+||+|..|.|+++ ||||-..+...+..||..|||..|+|..|.|+-++.+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999855 9999999999999999999999999999999988876
Q ss_pred CC
Q 030632 89 RI 90 (174)
Q Consensus 89 ~~ 90 (174)
..
T Consensus 75 sk 76 (346)
T KOG0109|consen 75 SK 76 (346)
T ss_pred CC
Confidence 43
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.28 E-value=1.4e-11 Score=99.37 Aligned_cols=82 Identities=20% Similarity=0.337 Sum_probs=74.8
Q ss_pred CCCCCCEEEEcCCCCCChHHHHHHhcc-cCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEE
Q 030632 4 LAVQKNTLYVGGLAEEVNEAILHAAFI-PFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTV 82 (174)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V 82 (174)
+....+.+||.|||+.+.+.+|+.+|. +.|.|..|.++.+. +|+++|||.|+|++++.+++|++.||.+.+.||+|.|
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~-~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDE-SGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeeccc-CCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 344566799999999999999999997 58999999999887 8999999999999999999999999999999999999
Q ss_pred Eeec
Q 030632 83 NYAL 86 (174)
Q Consensus 83 ~~a~ 86 (174)
+--.
T Consensus 119 KEd~ 122 (608)
T KOG4212|consen 119 KEDH 122 (608)
T ss_pred eccC
Confidence 7643
No 61
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.27 E-value=1.2e-11 Score=105.41 Aligned_cols=79 Identities=24% Similarity=0.485 Sum_probs=72.6
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
++|||||+|+.++++.+|..+|..||.|.+|.++. .+|||||.+..+.+|.+|+..|+.+.+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 58999999999999999999999999999998863 479999999999999999999999999999999999986
Q ss_pred CCCCC
Q 030632 88 ERIKG 92 (174)
Q Consensus 88 ~~~~~ 92 (174)
...+.
T Consensus 495 ~G~ks 499 (894)
T KOG0132|consen 495 KGPKS 499 (894)
T ss_pred CCcch
Confidence 65544
No 62
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.26 E-value=1.3e-11 Score=99.65 Aligned_cols=74 Identities=41% Similarity=0.659 Sum_probs=68.9
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecCC
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALPE 88 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~~ 88 (174)
..|||+||+.++|++.|+.+|..||.|..|..+++ ||||-|..+++|.+|++.+||..|.|..|.|.+|+|.
T Consensus 260 KvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD--------YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~ 331 (506)
T KOG0117|consen 260 KVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD--------YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPV 331 (506)
T ss_pred eeeeeeccchhhhHHHHHHHHHhccceEEeecccc--------eeEEeecchHHHHHHHHHhcCceecCceEEEEecCCh
Confidence 47999999999999999999999999999977644 9999999999999999999999999999999999986
Q ss_pred CC
Q 030632 89 RI 90 (174)
Q Consensus 89 ~~ 90 (174)
..
T Consensus 332 ~k 333 (506)
T KOG0117|consen 332 DK 333 (506)
T ss_pred hh
Confidence 43
No 63
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.26 E-value=5e-12 Score=106.75 Aligned_cols=80 Identities=31% Similarity=0.579 Sum_probs=75.5
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
..+.|+|.|||+.++-.+++.+|..||.+..|+|+.....+.++|||||.|-++.+|.+|+..|..+-++||+|.+.|+.
T Consensus 612 ~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGRrLVLEwA~ 691 (725)
T KOG0110|consen 612 KGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYGRRLVLEWAK 691 (725)
T ss_pred ccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceechhhheehhc
Confidence 35789999999999999999999999999999999886677889999999999999999999999999999999999996
No 64
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.24 E-value=1.2e-11 Score=94.18 Aligned_cols=83 Identities=23% Similarity=0.437 Sum_probs=74.9
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceec---CeEEEEE
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELY---GRVLTVN 83 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~---g~~l~V~ 83 (174)
..++||||.|...-.+++++.+|..||.|.+|.+.+.+ .|.++||+||.|.+..+|+.||..|||.... ..-|.|+
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK 96 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVK 96 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEE
Confidence 56899999999999999999999999999999999988 8999999999999999999999999997654 4669999
Q ss_pred eecCCCC
Q 030632 84 YALPERI 90 (174)
Q Consensus 84 ~a~~~~~ 90 (174)
++...+.
T Consensus 97 ~ADTdkE 103 (371)
T KOG0146|consen 97 FADTDKE 103 (371)
T ss_pred eccchHH
Confidence 9875544
No 65
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.20 E-value=7.2e-11 Score=92.66 Aligned_cols=74 Identities=30% Similarity=0.558 Sum_probs=66.1
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHH-hcCCceecCeEEEEEeec
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMD-NMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~-~l~g~~~~g~~l~V~~a~ 86 (174)
-.+|||++|...+++.+|+.+|.+||.|.++.+... +++|||+|.++..|+.|.. .+|...|.|++|+|.|+.
T Consensus 228 I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~------~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~ 301 (377)
T KOG0153|consen 228 IKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR------KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGR 301 (377)
T ss_pred eeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc------cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCC
Confidence 469999999999999999999999999999988643 4699999999999998766 456677899999999999
Q ss_pred C
Q 030632 87 P 87 (174)
Q Consensus 87 ~ 87 (174)
|
T Consensus 302 ~ 302 (377)
T KOG0153|consen 302 P 302 (377)
T ss_pred C
Confidence 8
No 66
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.19 E-value=4.3e-11 Score=92.00 Aligned_cols=78 Identities=23% Similarity=0.415 Sum_probs=71.6
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
...+++|+||||.+.|+..+|+..|.+||+|..|.|++ +|+||-|...++|..|++.|++..|.|++++|..
T Consensus 75 sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--------dy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~ 146 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--------DYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQL 146 (346)
T ss_pred CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--------ceeEEEEeeccchHHHHhcccccccccceeeeee
Confidence 34678999999999999999999999999999999974 5999999999999999999999999999999999
Q ss_pred ecCCCC
Q 030632 85 ALPERI 90 (174)
Q Consensus 85 a~~~~~ 90 (174)
+..+-.
T Consensus 147 stsrlr 152 (346)
T KOG0109|consen 147 STSRLR 152 (346)
T ss_pred eccccc
Confidence 876544
No 67
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.17 E-value=9.9e-11 Score=95.15 Aligned_cols=79 Identities=24% Similarity=0.463 Sum_probs=72.7
Q ss_pred EEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecCCC
Q 030632 10 TLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALPER 89 (174)
Q Consensus 10 ~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~~~ 89 (174)
.|||.||++.++...|..+|+.||.|.+|.+.++. .| ++|| ||.|.+.+.|.+|+..|||..+.|+.|.|.....+.
T Consensus 78 ~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~-~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~~~~~ 154 (369)
T KOG0123|consen 78 LVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDE-NG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLFERKE 154 (369)
T ss_pred eeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcC-CC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeeccchh
Confidence 39999999999999999999999999999999987 55 8999 999999999999999999999999999998876554
Q ss_pred CC
Q 030632 90 IK 91 (174)
Q Consensus 90 ~~ 91 (174)
.+
T Consensus 155 er 156 (369)
T KOG0123|consen 155 ER 156 (369)
T ss_pred hh
Confidence 43
No 68
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.14 E-value=2.6e-10 Score=96.42 Aligned_cols=81 Identities=15% Similarity=0.245 Sum_probs=68.2
Q ss_pred CCCCEEEEcCCCCC----------ChHHHHHHhcccCCCeeEEEEecCC---CCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 030632 6 VQKNTLYVGGLAEE----------VNEAILHAAFIPFGDIKDVKTPLDQ---ATQKHRSFGFVTFLEKEDAIQAMDNMDG 72 (174)
Q Consensus 6 ~~~~~l~V~nLp~~----------~t~~~L~~~F~~~G~i~~v~~~~~~---~~~~~~g~afV~f~~~~~a~~al~~l~g 72 (174)
.++.+|+|.||... ...++|+.+|.+||.|..|.|++.. .++...|++||.|.+.+.|.+|+..|||
T Consensus 407 ~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnG 486 (509)
T TIGR01642 407 KPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNG 486 (509)
T ss_pred CCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCC
Confidence 35678999999642 1236799999999999999998752 2456689999999999999999999999
Q ss_pred ceecCeEEEEEeec
Q 030632 73 AELYGRVLTVNYAL 86 (174)
Q Consensus 73 ~~~~g~~l~V~~a~ 86 (174)
..|.|+.|.|.|..
T Consensus 487 r~~~gr~v~~~~~~ 500 (509)
T TIGR01642 487 RKFNDRVVVAAFYG 500 (509)
T ss_pred CEECCeEEEEEEeC
Confidence 99999999999974
No 69
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.12 E-value=1.4e-10 Score=91.86 Aligned_cols=79 Identities=22% Similarity=0.439 Sum_probs=74.8
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
-++|||..+.+..++.+|+..|..||+|..|.+-+.+..+.++||+|++|.+......||..||-..++|..|+|..+.
T Consensus 210 fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 210 FNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred hheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceEeccccc
Confidence 4699999999999999999999999999999999999888899999999999999999999999999999999997664
No 70
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.08 E-value=1.6e-10 Score=91.40 Aligned_cols=85 Identities=29% Similarity=0.479 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
..++||||+|+|.++++.|+..|.+||.|..|.+++++.+++++||+||+|.+......++.. .-+.|.|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999988888888764 4578999999999988
Q ss_pred CCCCCC
Q 030632 87 PERIKG 92 (174)
Q Consensus 87 ~~~~~~ 92 (174)
|+....
T Consensus 84 ~r~~~~ 89 (311)
T KOG4205|consen 84 SREDQT 89 (311)
T ss_pred Cccccc
Confidence 876543
No 71
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.05 E-value=1.9e-09 Score=80.32 Aligned_cols=82 Identities=23% Similarity=0.378 Sum_probs=67.7
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEec-CCCCCCcccEEEEEEcCHHHHHHHHHhcCCceec---CeEEEEE
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPL-DQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELY---GRVLTVN 83 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~-~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~---g~~l~V~ 83 (174)
-+||||.|||..+...+|..+|..|.....+.+.. .+.....+-+||++|.+...|..|++.|||..|. +.+|++.
T Consensus 34 VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiE 113 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIE 113 (284)
T ss_pred cceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCceeEee
Confidence 58999999999999999999999997666665533 2222234579999999999999999999999987 7889999
Q ss_pred eecCCC
Q 030632 84 YALPER 89 (174)
Q Consensus 84 ~a~~~~ 89 (174)
+++...
T Consensus 114 lAKSNt 119 (284)
T KOG1457|consen 114 LAKSNT 119 (284)
T ss_pred ehhcCc
Confidence 987543
No 72
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.04 E-value=7e-10 Score=90.23 Aligned_cols=75 Identities=29% Similarity=0.526 Sum_probs=70.0
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecCC
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALPE 88 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~~ 88 (174)
..|||| +.+|+..|..+|+++|+|.++++.++. + +.|||||.|.++.+|.+|+..||...+.|++|+|-|+...
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t--slgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd 75 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T--SLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRD 75 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C--ccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccC
Confidence 468999 899999999999999999999999997 5 9999999999999999999999999999999999998654
Q ss_pred C
Q 030632 89 R 89 (174)
Q Consensus 89 ~ 89 (174)
.
T Consensus 76 ~ 76 (369)
T KOG0123|consen 76 P 76 (369)
T ss_pred C
Confidence 3
No 73
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.1e-09 Score=92.83 Aligned_cols=78 Identities=23% Similarity=0.351 Sum_probs=69.9
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCC---CcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQ---KHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~---~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
++|||.||++.++...|..+|..+|.|..+.|...+... .+.|||||.|.+.++|+.|++.|+|+.|.|+.|.|.++
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S 595 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKIS 595 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEec
Confidence 349999999999999999999999999999887665221 24599999999999999999999999999999999998
Q ss_pred c
Q 030632 86 L 86 (174)
Q Consensus 86 ~ 86 (174)
.
T Consensus 596 ~ 596 (725)
T KOG0110|consen 596 E 596 (725)
T ss_pred c
Confidence 7
No 74
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.99 E-value=2.1e-09 Score=82.19 Aligned_cols=80 Identities=25% Similarity=0.384 Sum_probs=74.3
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
...+|+|.|||+.++..+|+++|..||.+..+.+..++ +|.+.|.|-|.|....+|..|+..|||..+.|++|++....
T Consensus 82 ~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~-~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~ 160 (243)
T KOG0533|consen 82 RSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDR-AGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIIS 160 (243)
T ss_pred CcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCC-CCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEec
Confidence 34789999999999999999999999999999998888 89999999999999999999999999999999999988765
Q ss_pred C
Q 030632 87 P 87 (174)
Q Consensus 87 ~ 87 (174)
+
T Consensus 161 ~ 161 (243)
T KOG0533|consen 161 S 161 (243)
T ss_pred C
Confidence 4
No 75
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.98 E-value=9.8e-10 Score=88.83 Aligned_cols=76 Identities=25% Similarity=0.341 Sum_probs=68.4
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
.+..++|||.|||+.+|+.-|+.-|..||.|....|+. .|+++| .|.|.++++|++|+..|+|..+.|+.|.|.+
T Consensus 533 arKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime---~GkskG--VVrF~s~edAEra~a~Mngs~l~Gr~I~V~y 607 (608)
T KOG4212|consen 533 ARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIME---NGKSKG--VVRFFSPEDAERACALMNGSRLDGRNIKVTY 607 (608)
T ss_pred cccccEEEEecCCccccHHHHHHHHHhccceehhhhhc---cCCccc--eEEecCHHHHHHHHHHhccCcccCceeeeee
Confidence 34568899999999999999999999999999988854 466776 8999999999999999999999999999987
Q ss_pred e
Q 030632 85 A 85 (174)
Q Consensus 85 a 85 (174)
.
T Consensus 608 ~ 608 (608)
T KOG4212|consen 608 F 608 (608)
T ss_pred C
Confidence 3
No 76
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.96 E-value=1.5e-09 Score=85.92 Aligned_cols=84 Identities=27% Similarity=0.499 Sum_probs=76.7
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
...||||+||..+++.+++..|.+||.|..+.++.+..+.+.+||+||.|.+.+.+.+++.. .-+.|.|+.+.|..|.|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~f~~~~gk~vevkrA~p 175 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-KFHDFNGKKVEVKRAIP 175 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-ceeeecCceeeEeeccc
Confidence 45899999999999999999999999999999999999999999999999999999988764 77899999999999998
Q ss_pred CCCCC
Q 030632 88 ERIKG 92 (174)
Q Consensus 88 ~~~~~ 92 (174)
+....
T Consensus 176 k~~~~ 180 (311)
T KOG4205|consen 176 KEVMQ 180 (311)
T ss_pred hhhcc
Confidence 76543
No 77
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.94 E-value=1.9e-09 Score=81.58 Aligned_cols=81 Identities=28% Similarity=0.503 Sum_probs=74.7
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
+....+||+|.|...++...|-..|.+|-......++++..+|+++||+||.|.+..++..|+..|+|..++.++|+++.
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRk 266 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRK 266 (290)
T ss_pred ccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchhHhhh
Confidence 34467999999999999999999999998888888999999999999999999999999999999999999999998865
Q ss_pred e
Q 030632 85 A 85 (174)
Q Consensus 85 a 85 (174)
+
T Consensus 267 S 267 (290)
T KOG0226|consen 267 S 267 (290)
T ss_pred h
Confidence 4
No 78
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.94 E-value=9.1e-09 Score=80.99 Aligned_cols=81 Identities=23% Similarity=0.308 Sum_probs=73.1
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCee--------EEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeE
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIK--------DVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRV 79 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~ 79 (174)
++.|||.|||..+|...+..+|++||-|. .|.|.++. .|..+|=|++.|...++...|+..|++..|.|+.
T Consensus 134 Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~-~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 134 NTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDN-QGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred CceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecC-CCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 56799999999999999999999999875 47777776 6999999999999999999999999999999999
Q ss_pred EEEEeecCCC
Q 030632 80 LTVNYALPER 89 (174)
Q Consensus 80 l~V~~a~~~~ 89 (174)
|+|..|+-..
T Consensus 213 ~rVerAkfq~ 222 (382)
T KOG1548|consen 213 LRVERAKFQM 222 (382)
T ss_pred EEEehhhhhh
Confidence 9999987443
No 79
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.94 E-value=3.5e-09 Score=86.82 Aligned_cols=79 Identities=28% Similarity=0.412 Sum_probs=67.4
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
..+|||+|||++++...|+.+|..||.|....|......++..+||||+|.+...++.||.. +-..|++++|.|.-.++
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 45699999999999999999999999999887754322344459999999999999999987 67889999999987765
No 80
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.93 E-value=2e-09 Score=91.39 Aligned_cols=81 Identities=28% Similarity=0.518 Sum_probs=72.7
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCC---CCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEE
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQA---TQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTV 82 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~---~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V 82 (174)
|-+++|||+||++++++..|-..|..||+|..+.|+..+. ....+.|+||.|-+..++++|++.|+|..+.++.+++
T Consensus 172 P~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~ 251 (877)
T KOG0151|consen 172 PQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMKL 251 (877)
T ss_pred CcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeeee
Confidence 4578999999999999999999999999999998876542 2345789999999999999999999999999999999
Q ss_pred Eeec
Q 030632 83 NYAL 86 (174)
Q Consensus 83 ~~a~ 86 (174)
.|++
T Consensus 252 gWgk 255 (877)
T KOG0151|consen 252 GWGK 255 (877)
T ss_pred cccc
Confidence 9984
No 81
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.91 E-value=1.7e-09 Score=81.00 Aligned_cols=72 Identities=33% Similarity=0.533 Sum_probs=66.4
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecCC
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALPE 88 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~~ 88 (174)
..+|||+||+.+.+.+|..+|..||.+..+.+. .||+||.|.+..+|..|+.-||+..|.|..+.|.|+...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 479999999999999999999999999998763 579999999999999999999999999999999999853
No 82
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.91 E-value=1e-08 Score=67.87 Aligned_cols=79 Identities=18% Similarity=0.319 Sum_probs=69.5
Q ss_pred CCEEEEcCCCCCChHHHHHHhccc--CCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceec----CeEEE
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIP--FGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELY----GRVLT 81 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~----g~~l~ 81 (174)
.+||.|+|||...+...|..++.. .|....+.++.+..++.+.|||||.|.++..|..-...++|..+. .+.+.
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 379999999999999998888865 377788899999889999999999999999999999999998775 57788
Q ss_pred EEeec
Q 030632 82 VNYAL 86 (174)
Q Consensus 82 V~~a~ 86 (174)
|.||+
T Consensus 81 i~yAr 85 (97)
T PF04059_consen 81 ISYAR 85 (97)
T ss_pred EehhH
Confidence 88875
No 83
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.90 E-value=6.5e-09 Score=79.40 Aligned_cols=82 Identities=24% Similarity=0.389 Sum_probs=75.7
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
...+.+||+|+.+.++...+..+|..||.|..+.++.+..++.++||+||.|.+...+..++. |+|..|.|+.|.|.+.
T Consensus 99 ~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~ 177 (231)
T KOG4209|consen 99 VDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLK 177 (231)
T ss_pred cCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeee
Confidence 356789999999999999999999999999999999999888999999999999999999999 9999999999999887
Q ss_pred cCC
Q 030632 86 LPE 88 (174)
Q Consensus 86 ~~~ 88 (174)
+-.
T Consensus 178 r~~ 180 (231)
T KOG4209|consen 178 RTN 180 (231)
T ss_pred eee
Confidence 543
No 84
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.90 E-value=1.2e-09 Score=90.53 Aligned_cols=72 Identities=26% Similarity=0.484 Sum_probs=66.3
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEE
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLT 81 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~ 81 (174)
..+.++|+|-|||..++..+|+.+|+.||.|..|+. +...+|..||.|.+...|+.|++.||+..|.|+.|+
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~-----t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRE-----TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhc-----ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 346789999999999999999999999999999766 556789999999999999999999999999999988
No 85
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.75 E-value=4e-09 Score=78.37 Aligned_cols=81 Identities=25% Similarity=0.302 Sum_probs=72.3
Q ss_pred CCCCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEE
Q 030632 3 NLAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTV 82 (174)
Q Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V 82 (174)
..++..+||||+||...++++-|.++|-+.|+|..|.|+..+ .+..+ ||||.|.+.....-|+..+||..+.+..|.|
T Consensus 4 aaae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~-d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~ 81 (267)
T KOG4454|consen 4 AAAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQ-DQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQR 81 (267)
T ss_pred CCcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCc-cCCCc-eeeeecccccchhhhhhhcccchhccchhhc
Confidence 345568999999999999999999999999999999998877 55666 9999999999999999999999999988887
Q ss_pred Eee
Q 030632 83 NYA 85 (174)
Q Consensus 83 ~~a 85 (174)
.+-
T Consensus 82 ~~r 84 (267)
T KOG4454|consen 82 TLR 84 (267)
T ss_pred ccc
Confidence 654
No 86
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.61 E-value=2.1e-07 Score=76.42 Aligned_cols=79 Identities=20% Similarity=0.244 Sum_probs=66.8
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
.....-|-+.+|||+||+++|..||+.++ |..+.+++. +|+..|-|||+|.+.+++.+|++. +...+..+.|.|-.
T Consensus 7 ~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~--~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~ 82 (510)
T KOG4211|consen 7 GSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRR--NGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFT 82 (510)
T ss_pred CCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEecc--CCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEc
Confidence 34455677889999999999999999995 666555544 799999999999999999999986 88889999999987
Q ss_pred ecC
Q 030632 85 ALP 87 (174)
Q Consensus 85 a~~ 87 (174)
+.+
T Consensus 83 ~~~ 85 (510)
T KOG4211|consen 83 AGG 85 (510)
T ss_pred cCC
Confidence 754
No 87
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.52 E-value=8.9e-08 Score=79.80 Aligned_cols=84 Identities=25% Similarity=0.398 Sum_probs=77.8
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
.....+||++||..+++..+.+++..||.+....++.+..+|-++||||.+|.+......|+..|||..+++++|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 34568999999999999999999999999999999999988999999999999999999999999999999999999887
Q ss_pred cCCC
Q 030632 86 LPER 89 (174)
Q Consensus 86 ~~~~ 89 (174)
-+..
T Consensus 367 ~~g~ 370 (500)
T KOG0120|consen 367 IVGA 370 (500)
T ss_pred hccc
Confidence 6543
No 88
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.41 E-value=2.1e-06 Score=69.34 Aligned_cols=76 Identities=26% Similarity=0.478 Sum_probs=68.2
Q ss_pred CCEEEEcCCCC-CChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 8 KNTLYVGGLAE-EVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 8 ~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
+..|.|.||.. .+|...|..+|+.||.|.+|.|..++ +-.|+|.|.+...|.-|+..|+|+.+.|++|+|.+++
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nk-----kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SK 371 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNK-----KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSK 371 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecC-----CcceeeeecchhHHHHHHHHhhcceecCceEEEeecc
Confidence 56788888865 69999999999999999999998774 3689999999999999999999999999999999987
Q ss_pred CC
Q 030632 87 PE 88 (174)
Q Consensus 87 ~~ 88 (174)
-.
T Consensus 372 H~ 373 (492)
T KOG1190|consen 372 HT 373 (492)
T ss_pred Cc
Confidence 43
No 89
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=98.35 E-value=4e-07 Score=69.19 Aligned_cols=73 Identities=15% Similarity=0.317 Sum_probs=60.8
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCC--------CCcc----cEEEEEEcCHHHHHHHHHhcCCce
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQAT--------QKHR----SFGFVTFLEKEDAIQAMDNMDGAE 74 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~--------~~~~----g~afV~f~~~~~a~~al~~l~g~~ 74 (174)
....||+++||+.+...-|+.+|+.||.|-.|.|-....+ |..+ .-|+|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999987543322 2222 238899999999999999999999
Q ss_pred ecCeE
Q 030632 75 LYGRV 79 (174)
Q Consensus 75 ~~g~~ 79 (174)
|+|+.
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 99875
No 90
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=98.30 E-value=2.3e-06 Score=70.42 Aligned_cols=77 Identities=21% Similarity=0.260 Sum_probs=65.1
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeE-EEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKD-VKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
....|-+++||+.|++.+|.+||+..-.+.. |.++.++ .+++.|-|||.|.+.+.|++||.. |...|..+.|.|..+
T Consensus 102 ~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~-rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~S 179 (510)
T KOG4211|consen 102 NDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQ-RGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRS 179 (510)
T ss_pred CCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccC-CCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehh
Confidence 3457888999999999999999998755544 5666666 677999999999999999999986 778899999998765
No 91
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.28 E-value=5.8e-07 Score=71.29 Aligned_cols=83 Identities=23% Similarity=0.311 Sum_probs=74.5
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCee--------EEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecC
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIK--------DVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYG 77 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~--------~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g 77 (174)
...-+|||-+||.+++..+|..+|.++|.|. .|.|.+++.|+..+|-|.|+|.+...|+.|+.-+++..|.+
T Consensus 64 s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~g 143 (351)
T KOG1995|consen 64 SDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCG 143 (351)
T ss_pred cccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhccccccC
Confidence 3456899999999999999999999999875 36677888899999999999999999999999999999999
Q ss_pred eEEEEEeecCC
Q 030632 78 RVLTVNYALPE 88 (174)
Q Consensus 78 ~~l~V~~a~~~ 88 (174)
.+|+|..+..+
T Consensus 144 n~ikvs~a~~r 154 (351)
T KOG1995|consen 144 NTIKVSLAERR 154 (351)
T ss_pred CCchhhhhhhc
Confidence 99999887544
No 92
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.21 E-value=1.4e-06 Score=68.69 Aligned_cols=84 Identities=23% Similarity=0.427 Sum_probs=75.7
Q ss_pred CCCEEE-EcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 7 QKNTLY-VGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 7 ~~~~l~-V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
+..++| |++|+..++..+|+.+|..+|.|..++++..+.++...||++|.|.....+..++.. ....+.++++.+...
T Consensus 183 ~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 261 (285)
T KOG4210|consen 183 PSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEED 261 (285)
T ss_pred ccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccC
Confidence 445666 999999999999999999999999999999999999999999999999999999887 788999999999998
Q ss_pred cCCCCC
Q 030632 86 LPERIK 91 (174)
Q Consensus 86 ~~~~~~ 91 (174)
.+....
T Consensus 262 ~~~~~~ 267 (285)
T KOG4210|consen 262 EPRPKS 267 (285)
T ss_pred CCCccc
Confidence 776443
No 93
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=98.19 E-value=2e-06 Score=68.25 Aligned_cols=77 Identities=19% Similarity=0.222 Sum_probs=67.2
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCC--CeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFG--DIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G--~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
-.+|||||-|++|.++|.+.+...| .+..++++.++.+|.++|||+|...+....++.+..|.-..|+|..-.|-..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 4689999999999999999998876 5667788899989999999999999999999999999999999877666443
No 94
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.18 E-value=5.1e-06 Score=53.01 Aligned_cols=68 Identities=22% Similarity=0.381 Sum_probs=47.1
Q ss_pred CEEEEcCCCCCChHHH----HHHhcccCC-CeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEE
Q 030632 9 NTLYVGGLAEEVNEAI----LHAAFIPFG-DIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVN 83 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~----L~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~ 83 (174)
+.|||.|||....... |+.++..|| .|..| ..+-|+|.|.+.+.|.+|.+.|+|-.+.|++|.|.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~ 72 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVS 72 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEE
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEE
Confidence 4689999999877654 566666775 55554 23689999999999999999999999999999999
Q ss_pred eec
Q 030632 84 YAL 86 (174)
Q Consensus 84 ~a~ 86 (174)
+..
T Consensus 73 ~~~ 75 (90)
T PF11608_consen 73 FSP 75 (90)
T ss_dssp SS-
T ss_pred EcC
Confidence 874
No 95
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.18 E-value=1.8e-06 Score=64.68 Aligned_cols=67 Identities=22% Similarity=0.298 Sum_probs=55.4
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceec
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELY 76 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~ 76 (174)
..+.||||.||.++|+++.|+.+|+.|.....++|... ..-+.||+.|...+.|..|+..|.|..|.
T Consensus 208 ~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~~lqg~~~s 274 (284)
T KOG1457|consen 208 RACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMNHLQGNLLS 274 (284)
T ss_pred hhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHHHhhcceec
Confidence 34679999999999999999999999987766665322 23468999999999999999999887653
No 96
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=98.17 E-value=6.7e-07 Score=74.34 Aligned_cols=80 Identities=21% Similarity=0.367 Sum_probs=73.0
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
.+|+|+--|+..++..+|..||+.+|.|..|.++.++.++.++|.+||+|.+......|| .|.|..+.|.+|.|.....
T Consensus 179 ~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEa 257 (549)
T KOG0147|consen 179 QRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEA 257 (549)
T ss_pred HHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHH
Confidence 468888888888999999999999999999999999999999999999999999999998 5899999999999987644
Q ss_pred C
Q 030632 88 E 88 (174)
Q Consensus 88 ~ 88 (174)
.
T Consensus 258 e 258 (549)
T KOG0147|consen 258 E 258 (549)
T ss_pred H
Confidence 3
No 97
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.05 E-value=2.2e-06 Score=69.54 Aligned_cols=110 Identities=20% Similarity=0.338 Sum_probs=82.8
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCC-CeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCc-eecCeEEEEEeec
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFG-DIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGA-ELYGRVLTVNYAL 86 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~-~~~g~~l~V~~a~ 86 (174)
..+|++||.+.++..+|+.+|...- ....-++ ...||+||.+.+...|.+|+..++|. .+.|+++.|.++.
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl-------~k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv 74 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-------VKSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSV 74 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCccee-------eecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchh
Confidence 4689999999999999999998641 1111122 23589999999999999999999996 7899999999999
Q ss_pred CCCCCCCCCCCCCCcc---ccchhHHHHHHHHHHHHHHHHHH
Q 030632 87 PERIKGGEQGWAAQPI---WADADTWFERQQQEEEMQRLQAE 125 (174)
Q Consensus 87 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 125 (174)
++..+.+.....+.|. |+....++.++.-.+..++...+
T Consensus 75 ~kkqrsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~ 116 (584)
T KOG2193|consen 75 PKKQRSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTD 116 (584)
T ss_pred hHHHHhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccc
Confidence 9888877766666655 66666666666555544443333
No 98
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.03 E-value=2.3e-05 Score=52.79 Aligned_cols=71 Identities=25% Similarity=0.415 Sum_probs=42.8
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCc-----eecCeEEEE
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGA-----ELYGRVLTV 82 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~-----~~~g~~l~V 82 (174)
++.|.|.+++..++..+|+.+|+.||.|..|.+... ...|||.|.+.+.|+.|+..+... .|.+..+.+
T Consensus 1 G~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G------~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 1 GCILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRG------DTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp --EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-------SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred CeEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCC------CCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 356889999999999999999999999999988532 348999999999999998876433 444544444
Q ss_pred Ee
Q 030632 83 NY 84 (174)
Q Consensus 83 ~~ 84 (174)
..
T Consensus 75 ~v 76 (105)
T PF08777_consen 75 EV 76 (105)
T ss_dssp E-
T ss_pred EE
Confidence 43
No 99
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.01 E-value=1.4e-05 Score=63.28 Aligned_cols=80 Identities=31% Similarity=0.499 Sum_probs=62.1
Q ss_pred CCEEEEcCCCCCChHHH------HHHhcccCCCeeEEEEecCCC-CCCcccE--EEEEEcCHHHHHHHHHhcCCceecCe
Q 030632 8 KNTLYVGGLAEEVNEAI------LHAAFIPFGDIKDVKTPLDQA-TQKHRSF--GFVTFLEKEDAIQAMDNMDGAELYGR 78 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~------L~~~F~~~G~i~~v~~~~~~~-~~~~~g~--afV~f~~~~~a~~al~~l~g~~~~g~ 78 (174)
..-+||-+||+.+..+. -..+|.+||.|..|.+-+.-. .....++ .||+|.+.++|.+||....|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 34589999998866544 247899999999998754421 1122233 49999999999999999999999999
Q ss_pred EEEEEeecC
Q 030632 79 VLTVNYALP 87 (174)
Q Consensus 79 ~l~V~~a~~ 87 (174)
.|+..|...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999988754
No 100
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.00 E-value=3.4e-05 Score=57.82 Aligned_cols=77 Identities=21% Similarity=0.395 Sum_probs=67.5
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceec-CeEEEEE
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELY-GRVLTVN 83 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~-g~~l~V~ 83 (174)
.++...+|+.|||..++...|..+|.+|+....++++.. ..+.|||+|.+...+..|...+.+..|. ...+.|.
T Consensus 143 ~ppn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~ 217 (221)
T KOG4206|consen 143 APPNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQIT 217 (221)
T ss_pred CCCceEEEEecCCcchhHHHHHHHHhhCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEec
Confidence 577889999999999999999999999999999988654 3689999999999999999999998887 7788887
Q ss_pred eec
Q 030632 84 YAL 86 (174)
Q Consensus 84 ~a~ 86 (174)
++.
T Consensus 218 ~a~ 220 (221)
T KOG4206|consen 218 FAK 220 (221)
T ss_pred ccC
Confidence 763
No 101
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.93 E-value=8.3e-06 Score=61.38 Aligned_cols=71 Identities=35% Similarity=0.533 Sum_probs=62.1
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
.+.++|.+++..+.+.+|..+|.++|.+....+ .++++||.|....++..|+..|++..+.++.|.+....
T Consensus 99 ~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 99 HFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred cceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 567889999999999999999999999844332 46799999999999999999999999999999995543
No 102
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.90 E-value=5.2e-05 Score=62.99 Aligned_cols=64 Identities=25% Similarity=0.355 Sum_probs=59.8
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcc-cCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHh
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFI-PFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~ 69 (174)
.+.+|||||+||.-++..+|..+|. -||.|..+.|-+++.-+.++|-|=|+|.+...-.+||..
T Consensus 368 DprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 368 DPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 6789999999999999999999999 699999999999988889999999999999999999874
No 103
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.88 E-value=6e-05 Score=63.34 Aligned_cols=77 Identities=21% Similarity=0.350 Sum_probs=63.7
Q ss_pred CCEEEEcCCCCCCh------HHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceec-CeEE
Q 030632 8 KNTLYVGGLAEEVN------EAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELY-GRVL 80 (174)
Q Consensus 8 ~~~l~V~nLp~~~t------~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~-g~~l 80 (174)
...|+|.|+|---. ...|..+|+++|+|....++.+.. |..+||.|++|.+...|..|++.|||+.|. .++.
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~-ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf 136 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE-GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTF 136 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc-CCeeeEEEEEecChhhHHHHHHhcccceecccceE
Confidence 45788889986322 246789999999999999998874 459999999999999999999999999876 6777
Q ss_pred EEEee
Q 030632 81 TVNYA 85 (174)
Q Consensus 81 ~V~~a 85 (174)
.|...
T Consensus 137 ~v~~f 141 (698)
T KOG2314|consen 137 FVRLF 141 (698)
T ss_pred Eeehh
Confidence 77654
No 104
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.83 E-value=6.5e-05 Score=64.56 Aligned_cols=79 Identities=15% Similarity=0.182 Sum_probs=66.3
Q ss_pred CCCCC-EEEEcCCCCCChHHHHHHhcccCCCee-EEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEE
Q 030632 5 AVQKN-TLYVGGLAEEVNEAILHAAFIPFGDIK-DVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTV 82 (174)
Q Consensus 5 ~~~~~-~l~V~nLp~~~t~~~L~~~F~~~G~i~-~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V 82 (174)
..+++ .|-+.|+|+.++.++|.+||..|-.+- +|.+.++ ..|+..|-|.|-|.+.++|..|...|++..|.++++.+
T Consensus 863 ~~pGp~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~n-d~G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr~V~l 941 (944)
T KOG4307|consen 863 KSPGPRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRN-DDGVPTGECMVAFESQEEARRASMDLDGQKIRNRVVSL 941 (944)
T ss_pred CCCCCeEEEecCCCccccHHHHHHHhcccccCCCceeEeec-CCCCcccceeEeecCHHHHHhhhhccccCcccceeEEE
Confidence 34555 566789999999999999999997654 4444444 37999999999999999999999999999999999887
Q ss_pred Ee
Q 030632 83 NY 84 (174)
Q Consensus 83 ~~ 84 (174)
..
T Consensus 942 ~i 943 (944)
T KOG4307|consen 942 RI 943 (944)
T ss_pred Ee
Confidence 64
No 105
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.72 E-value=0.00028 Score=49.90 Aligned_cols=76 Identities=21% Similarity=0.329 Sum_probs=53.7
Q ss_pred CCCCCCCCEEEEcCCCC------CChH---HHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 030632 2 ANLAVQKNTLYVGGLAE------EVNE---AILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDG 72 (174)
Q Consensus 2 ~~~~~~~~~l~V~nLp~------~~t~---~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g 72 (174)
+...||..||.|.-+.+ .+.+ ..|...|..||.+.-++++. +.-+|+|.+-..|.+|+. |+|
T Consensus 21 ~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--------~~mwVTF~dg~sALaals-~dg 91 (146)
T PF08952_consen 21 SSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--------DTMWVTFRDGQSALAALS-LDG 91 (146)
T ss_dssp -----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--------TCEEEEESSCHHHHHHHH-GCC
T ss_pred HhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--------CeEEEEECccHHHHHHHc-cCC
Confidence 34567888988875551 2222 46888899999998888863 367999999999999997 699
Q ss_pred ceecCeEEEEEeec
Q 030632 73 AELYGRVLTVNYAL 86 (174)
Q Consensus 73 ~~~~g~~l~V~~a~ 86 (174)
..+.|+.|+|+...
T Consensus 92 ~~v~g~~l~i~LKt 105 (146)
T PF08952_consen 92 IQVNGRTLKIRLKT 105 (146)
T ss_dssp SEETTEEEEEEE--
T ss_pred cEECCEEEEEEeCC
Confidence 99999999999865
No 106
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.71 E-value=0.00015 Score=60.84 Aligned_cols=64 Identities=22% Similarity=0.379 Sum_probs=55.0
Q ss_pred HHHHHhcccCCCeeEEEEecC-C--CCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 23 AILHAAFIPFGDIKDVKTPLD-Q--ATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 23 ~~L~~~F~~~G~i~~v~~~~~-~--~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
++++.-+++||.|..|.+++. . ......|..||+|.+.++|++|...|+|..|.|+++...|..
T Consensus 424 Edvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 424 EDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred HHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 567788899999999999887 2 123356889999999999999999999999999999998873
No 107
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.70 E-value=0.00031 Score=46.77 Aligned_cols=78 Identities=15% Similarity=0.178 Sum_probs=52.2
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEE-EecCC------CCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeE
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVK-TPLDQ------ATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRV 79 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~-~~~~~------~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~ 79 (174)
..+-|.|-|.|+..+ ..+...|++||.|.... +.++. .......+..|+|.++.+|.+||.. ||..|.|..
T Consensus 5 ~~~wVtVFGfp~~~~-~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~ 82 (100)
T PF05172_consen 5 SETWVTVFGFPPSAS-NQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSGSL 82 (100)
T ss_dssp GCCEEEEE---GGGH-HHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETTCE
T ss_pred CCeEEEEEccCHHHH-HHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcCcE
Confidence 456688889999855 55788999999998764 11110 0123456899999999999999986 999998864
Q ss_pred -EEEEeec
Q 030632 80 -LTVNYAL 86 (174)
Q Consensus 80 -l~V~~a~ 86 (174)
+-|.+.+
T Consensus 83 mvGV~~~~ 90 (100)
T PF05172_consen 83 MVGVKPCD 90 (100)
T ss_dssp EEEEEE-H
T ss_pred EEEEEEcH
Confidence 4466664
No 108
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.69 E-value=0.00012 Score=43.00 Aligned_cols=52 Identities=23% Similarity=0.530 Sum_probs=42.5
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHH
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAM 67 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al 67 (174)
+.|-|.|.++..... +..+|..||.|..+.+. ....+.+|.|.+..+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~------~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVP------ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcC------CCCcEEEEEECCHHHHHhhC
Confidence 568899999887755 55588899999998885 23469999999999999885
No 109
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.63 E-value=0.0004 Score=55.92 Aligned_cols=81 Identities=22% Similarity=0.308 Sum_probs=65.3
Q ss_pred CCCCEEEEcCCC--CCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecC--eEEE
Q 030632 6 VQKNTLYVGGLA--EEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYG--RVLT 81 (174)
Q Consensus 6 ~~~~~l~V~nLp--~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g--~~l~ 81 (174)
.++..|.+.=|. +-+|.+.|..+.-..|+|.+|.|++. +| -.|.|+|.+.+.|++|...|||..|+. -+|+
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ng---VQAmVEFdsv~~AqrAk~alNGADIYsGCCTLK 192 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NG---VQAMVEFDSVEVAQRAKAALNGADIYSGCCTLK 192 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cc---eeeEEeechhHHHHHHHhhcccccccccceeEE
Confidence 445556655554 45888999999999999999988765 33 369999999999999999999998874 5688
Q ss_pred EEeecCCCCC
Q 030632 82 VNYALPERIK 91 (174)
Q Consensus 82 V~~a~~~~~~ 91 (174)
|.||+|.+.+
T Consensus 193 IeyAkP~rln 202 (494)
T KOG1456|consen 193 IEYAKPTRLN 202 (494)
T ss_pred EEecCcceee
Confidence 9999987553
No 110
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=97.55 E-value=0.00027 Score=57.40 Aligned_cols=78 Identities=23% Similarity=0.217 Sum_probs=65.0
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCe-EEEEEe
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGR-VLTVNY 84 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~-~l~V~~ 84 (174)
||+.+|.+.|+|+.+++++|+.+|..-|........ .++.+-++++.+.+.+.|..|+..++.+.+++. .|+|.+
T Consensus 412 PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkf----f~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSF 487 (492)
T KOG1190|consen 412 PPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKF----FQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSF 487 (492)
T ss_pred CchhheeeccCCcccchhHHHHhhhcCCceEEeeee----cCCCcceeecccCChhHhhhhccccccccCCCCceEEEEe
Confidence 677899999999999999999999988766444322 344567999999999999999999999998854 899999
Q ss_pred ecC
Q 030632 85 ALP 87 (174)
Q Consensus 85 a~~ 87 (174)
++.
T Consensus 488 Sks 490 (492)
T KOG1190|consen 488 SKS 490 (492)
T ss_pred ecc
Confidence 863
No 111
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=97.54 E-value=0.00035 Score=51.21 Aligned_cols=63 Identities=24% Similarity=0.289 Sum_probs=56.4
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELY 76 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~ 76 (174)
+..+|.|.+||++.++.+|+.+....|.|+...+.++ |.+.|.|...++.+-|+..|....+.
T Consensus 114 Se~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV~~~r~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 114 SEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVVEYLRKEDMKYAVRKLDDQKFR 176 (241)
T ss_pred cceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceeeeeeehhhHHHHHHhhcccccc
Confidence 4568999999999999999999999999999888665 58999999999999999999877665
No 112
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=97.50 E-value=0.00059 Score=54.96 Aligned_cols=76 Identities=20% Similarity=0.266 Sum_probs=67.3
Q ss_pred CCCCEEEEcCCCC-CChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 6 VQKNTLYVGGLAE-EVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 6 ~~~~~l~V~nLp~-~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
.+++.++|-+|.. +++-+-|..+|-.||.|..|.+++.+ .|-|.|++.+....++|+..||+..+.|.+|.|.+
T Consensus 285 ~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk-----~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~ 359 (494)
T KOG1456|consen 285 APGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTK-----PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCV 359 (494)
T ss_pred CCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecc-----cceeEEEcCcHHHHHHHHHHhccCccccceEEEee
Confidence 4578899999985 46667899999999999999998654 57899999999999999999999999999999998
Q ss_pred ec
Q 030632 85 AL 86 (174)
Q Consensus 85 a~ 86 (174)
++
T Consensus 360 Sk 361 (494)
T KOG1456|consen 360 SK 361 (494)
T ss_pred cc
Confidence 75
No 113
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.46 E-value=0.0001 Score=60.00 Aligned_cols=66 Identities=18% Similarity=0.216 Sum_probs=55.1
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecC---CCCCC----------cccEEEEEEcCHHHHHHHHHhcCC
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLD---QATQK----------HRSFGFVTFLEKEDAIQAMDNMDG 72 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~---~~~~~----------~~g~afV~f~~~~~a~~al~~l~g 72 (174)
++++|.+.|||..-.-+-|..+|+.+|.|+.|+|... +.+.+ .+-||||+|.....|.+|.+.|+.
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 6889999999998777889999999999999998665 32211 146899999999999999998854
No 114
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.45 E-value=0.0012 Score=42.23 Aligned_cols=56 Identities=21% Similarity=0.361 Sum_probs=41.7
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcC
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMD 71 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 71 (174)
+....||+ +|..+...+|..+|+.||.|. |.++.+ .-|||.....+.+..++..+.
T Consensus 8 RdHVFhlt-FPkeWK~~DI~qlFspfG~I~-VsWi~d-------TSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 8 RDHVFHLT-FPKEWKTSDIYQLFSPFGQIY-VSWIND-------TSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp GCCEEEEE---TT--HHHHHHHCCCCCCEE-EEEECT-------TEEEEEECCCHHHHHHHHHHT
T ss_pred cceEEEEe-CchHhhhhhHHHHhccCCcEE-EEEEcC-------CcEEEEeecHHHHHHHHHHhc
Confidence 34455565 999999999999999999984 555544 379999999999999888775
No 115
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.42 E-value=0.00022 Score=57.48 Aligned_cols=79 Identities=18% Similarity=0.175 Sum_probs=66.2
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCC-ee--EEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEE
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGD-IK--DVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVN 83 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~--~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~ 83 (174)
+...|-+++||+.++.++|..||..|.. |. .|.++.+. .|+..|-|||.|.+.+.|..|....+.+.+.+|.|.|-
T Consensus 279 ~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~-qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvf 357 (508)
T KOG1365|consen 279 SKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNG-QGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVF 357 (508)
T ss_pred CCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcC-CCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEe
Confidence 3557889999999999999999998863 32 36666665 78999999999999999999999888888889999987
Q ss_pred eec
Q 030632 84 YAL 86 (174)
Q Consensus 84 ~a~ 86 (174)
.+.
T Consensus 358 p~S 360 (508)
T KOG1365|consen 358 PCS 360 (508)
T ss_pred ecc
Confidence 654
No 116
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.42 E-value=0.00026 Score=62.44 Aligned_cols=80 Identities=26% Similarity=0.382 Sum_probs=69.5
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecC--eEEEE
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYG--RVLTV 82 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g--~~l~V 82 (174)
..+.+.+||++|++++....|...|..||.|..|.+- ...-|++|.|.+...++.|+..|-|..|+| ++|+|
T Consensus 452 st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~------hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYR------HGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred cccceeeccCCCCCCChHHHHHHHhhccCcceeeecc------cCCcceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 4567899999999999999999999999999988763 345699999999999999999999999985 77999
Q ss_pred EeecCCCC
Q 030632 83 NYALPERI 90 (174)
Q Consensus 83 ~~a~~~~~ 90 (174)
.++.+...
T Consensus 526 dla~~~~~ 533 (975)
T KOG0112|consen 526 DLASPPGA 533 (975)
T ss_pred ccccCCCC
Confidence 99875443
No 117
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.41 E-value=5.8e-05 Score=66.37 Aligned_cols=99 Identities=16% Similarity=0.287 Sum_probs=76.4
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
.++|||+|||+..+++.+|+..|..+|.|..|.|.+.+ -+...-|+||.|.+...+..|+..+.+..|....+++.+..
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG~ 449 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLGQ 449 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCcccccccc
Confidence 46899999999999999999999999999999886654 44556699999999999999999999988887777777776
Q ss_pred CCCCCCCCCCCCCCccccch
Q 030632 87 PERIKGGEQGWAAQPIWADA 106 (174)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~ 106 (174)
+......+.+....+.|...
T Consensus 450 ~kst~ttr~~sgglg~w~p~ 469 (975)
T KOG0112|consen 450 PKSTPTTRLQSGGLGPWSPV 469 (975)
T ss_pred cccccceeeccCCCCCCChH
Confidence 53333323333334445553
No 118
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=97.41 E-value=0.00062 Score=54.23 Aligned_cols=77 Identities=25% Similarity=0.253 Sum_probs=61.5
Q ss_pred CCCCEEEEcCCCC----CCh-------HHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCce
Q 030632 6 VQKNTLYVGGLAE----EVN-------EAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAE 74 (174)
Q Consensus 6 ~~~~~l~V~nLp~----~~t-------~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 74 (174)
...++|+|.||=. ..+ .++|+.-..+||.|..|.|.-. .+.|.+.|.|.+...|..||..|+|..
T Consensus 263 r~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~ 338 (382)
T KOG1548|consen 263 RADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRW 338 (382)
T ss_pred cCCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCee
Confidence 3467888888721 122 2566777889999999988633 467999999999999999999999999
Q ss_pred ecCeEEEEEeec
Q 030632 75 LYGRVLTVNYAL 86 (174)
Q Consensus 75 ~~g~~l~V~~a~ 86 (174)
|.||.|......
T Consensus 339 fdgRql~A~i~D 350 (382)
T KOG1548|consen 339 FDGRQLTASIWD 350 (382)
T ss_pred ecceEEEEEEeC
Confidence 999999987654
No 119
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.28 E-value=0.00015 Score=63.57 Aligned_cols=80 Identities=16% Similarity=0.134 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
...|||.|+|+.+|.+.|+.+++.+|.+..++++..+ .|+++|.+||.|.+..++.+++..+....+.-+.+.|..+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r-~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVR-AGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhh-ccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 3468999999999999999999999999999988887 899999999999999999999988888777777777777665
Q ss_pred C
Q 030632 88 E 88 (174)
Q Consensus 88 ~ 88 (174)
.
T Consensus 815 ~ 815 (881)
T KOG0128|consen 815 E 815 (881)
T ss_pred c
Confidence 3
No 120
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.25 E-value=0.0016 Score=54.33 Aligned_cols=62 Identities=23% Similarity=0.469 Sum_probs=47.2
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCC---CCccc---EEEEEEcCHHHHHHHHHhc
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQAT---QKHRS---FGFVTFLEKEDAIQAMDNM 70 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~---~~~~g---~afV~f~~~~~a~~al~~l 70 (174)
.+.||||+||+.+++..|...|..||.+ .|.++..... ..++| |+|+.|.+......-+..+
T Consensus 259 S~KVFvGGlp~dise~~i~~~F~~FGs~-~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC 326 (520)
T KOG0129|consen 259 SRKVFVGGLPWDITEAQINASFGQFGSV-KVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSAC 326 (520)
T ss_pred ccceeecCCCccccHHHHHhhcccccce-EeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHH
Confidence 5789999999999999999999999986 4555532211 12456 9999999888777665543
No 121
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=97.11 E-value=0.00065 Score=54.90 Aligned_cols=67 Identities=21% Similarity=0.185 Sum_probs=52.6
Q ss_pred EEcCCCCCChHHHHHHhcccC----CCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEE
Q 030632 12 YVGGLAEEVNEAILHAAFIPF----GDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVL 80 (174)
Q Consensus 12 ~V~nLp~~~t~~~L~~~F~~~----G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l 80 (174)
-.++||+.++..++..||.+- |....|.+++.+ .|+..|-|||.|...+.|+.||.+ |...|+-|.|
T Consensus 165 RmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rp-dgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYI 235 (508)
T KOG1365|consen 165 RMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRP-DGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYI 235 (508)
T ss_pred EecCCCCCcchHHHHHhcCCCCcccCCccceEEEECC-CCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHH
Confidence 346999999999999999732 355667777766 789999999999999999999986 5544544333
No 122
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.05 E-value=0.0012 Score=57.06 Aligned_cols=78 Identities=18% Similarity=0.143 Sum_probs=65.0
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeE-EEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKD-VKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~-v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
.+..|||..||..++..++-.+|+..-.|.. |.|.+.+ ++..++.|||.|.....+..|+..-+.+.++.+.|+|...
T Consensus 433 ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si 511 (944)
T KOG4307|consen 433 AGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSI 511 (944)
T ss_pred ccceEEeccCCccccccchhhhhhhhhhhhheeEeccCC-cccccchhhheeccccccchhhhcccccccCceEEEeech
Confidence 3678999999999999999999998777766 7776666 7888999999999988888877655666777888999865
No 123
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.77 E-value=0.0079 Score=42.38 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=56.0
Q ss_pred CCCCCEEEEcCCCCCChH----HHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEE
Q 030632 5 AVQKNTLYVGGLAEEVNE----AILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVL 80 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~----~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l 80 (174)
.+|=.||.|+=|..++.. ..+...++.||+|.+|.+ .++.-|.|+|.+..+|=+|+..+.. ..-|..+
T Consensus 83 epPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~-------cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~ 154 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTL-------CGRQSAVVVFKDITSACKAVSAFQS-RAPGTMF 154 (166)
T ss_pred CCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeee-------cCCceEEEEehhhHHHHHHHHhhcC-CCCCceE
Confidence 356678888866555443 456667788999999966 3466899999999999999998764 5567778
Q ss_pred EEEeec
Q 030632 81 TVNYAL 86 (174)
Q Consensus 81 ~V~~a~ 86 (174)
.+.|-.
T Consensus 155 qCsWqq 160 (166)
T PF15023_consen 155 QCSWQQ 160 (166)
T ss_pred Eeeccc
Confidence 887754
No 124
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.76 E-value=0.005 Score=48.25 Aligned_cols=64 Identities=20% Similarity=0.241 Sum_probs=52.6
Q ss_pred HHHHHhcccCCCeeEEEEecCCCCCCccc-EEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 23 AILHAAFIPFGDIKDVKTPLDQATQKHRS-FGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 23 ~~L~~~F~~~G~i~~v~~~~~~~~~~~~g-~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
..+..-..+||.|..|.|...+....... -.||+|...++|.+|+--|||..|+|+.+...+..
T Consensus 301 de~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 301 DETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred HHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45667788999999998877764333332 37999999999999999999999999999988864
No 125
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.74 E-value=0.0013 Score=55.91 Aligned_cols=75 Identities=16% Similarity=0.240 Sum_probs=60.5
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcc-cCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee---cCeEEE
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFI-PFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAEL---YGRVLT 81 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~---~g~~l~ 81 (174)
..++.|||.||-.-+|.-.|+.++. .+|.|... |+ + +-+.+|||.|.+.+.|......|||..+ +++.|-
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~-Wm-D----kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ 515 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF-WM-D----KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLI 515 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH-HH-H----HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeE
Confidence 3467899999999999999999999 46666665 33 2 3567999999999999999999999765 467787
Q ss_pred EEeec
Q 030632 82 VNYAL 86 (174)
Q Consensus 82 V~~a~ 86 (174)
+.|..
T Consensus 516 adf~~ 520 (718)
T KOG2416|consen 516 ADFVR 520 (718)
T ss_pred eeecc
Confidence 77763
No 126
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=96.62 E-value=0.00013 Score=63.91 Aligned_cols=68 Identities=25% Similarity=0.360 Sum_probs=57.7
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceec
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELY 76 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~ 76 (174)
.++||.||++.+.+.+|...|..+|.+..+++......+..+|.|++.|.....+.+||....+..++
T Consensus 668 ~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 668 IKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 47899999999999999999999999988877655557899999999999999999998865444433
No 127
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.59 E-value=0.0055 Score=49.75 Aligned_cols=76 Identities=14% Similarity=0.233 Sum_probs=59.6
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCC---CCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQA---TQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~---~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
..|-|.||.+.++.++++.+|...|.|..+.|+-+.. .......|||.|.+...+..|- .|..+.|-++.|.|-.+
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdraliv~p~ 86 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDRALIVRPY 86 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeeeeEEEEec
Confidence 4899999999999999999999999999998865331 2234568999999888777665 46777777777776543
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=96.52 E-value=0.0025 Score=48.95 Aligned_cols=74 Identities=28% Similarity=0.382 Sum_probs=59.0
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCc----eecCeEEEEE
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGA----ELYGRVLTVN 83 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~----~~~g~~l~V~ 83 (174)
..|||.||+..++.+.|...|+.||+|....+..+- .++..+-++|.|...-.+.+|+..++.. ...+++.-|.
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~-r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~Ve 109 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDD-RGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVGVE 109 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeecc-cccccccchhhhhcchhHHHHHHHhccCccccCCCCCccCCC
Confidence 579999999999999999999999999876655554 6778889999999999999998877432 3334554443
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.47 E-value=0.0089 Score=43.99 Aligned_cols=82 Identities=16% Similarity=0.197 Sum_probs=50.6
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhccc-CCCe---eEEE--EecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecC-
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIP-FGDI---KDVK--TPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYG- 77 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~-~G~i---~~v~--~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g- 77 (174)
......|.|++||+++|++++...++. ++.- ..+. ............-|||.|.+.+.+......++|+.|.+
T Consensus 4 ~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 4 EKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp -----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 345679999999999999999988887 6655 2332 11111111123459999999999999999999987752
Q ss_pred ----eEEEEEeec
Q 030632 78 ----RVLTVNYAL 86 (174)
Q Consensus 78 ----~~l~V~~a~ 86 (174)
.+..|.+|-
T Consensus 84 kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 84 KGNEYPAVVEFAP 96 (176)
T ss_dssp TS-EEEEEEEE-S
T ss_pred CCCCcceeEEEcc
Confidence 345566664
No 130
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=96.22 E-value=0.0028 Score=52.49 Aligned_cols=74 Identities=23% Similarity=0.335 Sum_probs=58.1
Q ss_pred CEEEEcCCCCCC-hHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 9 NTLYVGGLAEEV-NEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 9 ~~l~V~nLp~~~-t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
+.|-+.-.|+.. +..+|..+|.+||.|..|.+-.. .-.|.|+|.+...|-.|... ++..|.++.|+|.|-+|
T Consensus 373 s~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~------~~~a~vTF~t~aeag~a~~s-~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS------SLHAVVTFKTRAEAGEAYAS-HGAVLNNRFIKLFWHNP 445 (526)
T ss_pred chhhhhccCCCCchHhhhhhhhhhcCccccccccCc------hhhheeeeeccccccchhcc-ccceecCceeEEEEecC
Confidence 344444455543 45789999999999999987433 45799999999999777764 89999999999999987
Q ss_pred CC
Q 030632 88 ER 89 (174)
Q Consensus 88 ~~ 89 (174)
..
T Consensus 446 s~ 447 (526)
T KOG2135|consen 446 SP 447 (526)
T ss_pred Cc
Confidence 54
No 131
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=96.08 E-value=0.0022 Score=49.21 Aligned_cols=63 Identities=16% Similarity=0.265 Sum_probs=51.6
Q ss_pred HHHHHhcc-cCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeec
Q 030632 23 AILHAAFI-PFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYAL 86 (174)
Q Consensus 23 ~~L~~~F~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~ 86 (174)
+++...|. +||.|..+.|-.+. .-..+|-++|.|...++|++|+..||+..+.|++|...+..
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl-~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNL-GDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhccc-chhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 44555555 89999988665443 44567889999999999999999999999999999988764
No 132
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.98 E-value=0.041 Score=33.26 Aligned_cols=56 Identities=18% Similarity=0.213 Sum_probs=44.3
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccC---CCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhc
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPF---GDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM 70 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~---G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l 70 (174)
....|+|.|+.. ++..+|+.+|..| .....|.++-+. -|-|.|.+...|.+||..|
T Consensus 4 rpeavhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 4 RPEAVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eeceEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-------cEEEEECCHHHHHHHHHcC
Confidence 456899999854 7778899999988 235578887664 5779999999999999764
No 133
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=95.88 E-value=0.16 Score=34.39 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=53.1
Q ss_pred CCCEEEEcCCCCCChH-HHHHHhcccC-CCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecC---eEEE
Q 030632 7 QKNTLYVGGLAEEVNE-AILHAAFIPF-GDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYG---RVLT 81 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~-~~L~~~F~~~-G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g---~~l~ 81 (174)
++.+|.|-.+|+..+. .+|..+...+ ..|..++|+++. ...+-.+++.|.+...|..-...+||..+.. ..++
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~--~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~Ch 88 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDG--TPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPETCH 88 (110)
T ss_pred CCceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCC--CCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCceeE
Confidence 4455666556665555 5566555555 467788888874 3356679999999999999999999988763 4454
Q ss_pred EEe
Q 030632 82 VNY 84 (174)
Q Consensus 82 V~~ 84 (174)
|-+
T Consensus 89 vvf 91 (110)
T PF07576_consen 89 VVF 91 (110)
T ss_pred EEE
Confidence 444
No 134
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=95.81 E-value=0.016 Score=48.95 Aligned_cols=80 Identities=18% Similarity=0.301 Sum_probs=59.3
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcc-cCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceec----CeEEE
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFI-PFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELY----GRVLT 81 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~-~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~----g~~l~ 81 (174)
+.+++.|.|+|.+.|-.-|...-. ..|.-..+.++.+..+....|||||.|.+...+..+.+.+||..+. .+.+.
T Consensus 387 ~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~ 466 (549)
T KOG4660|consen 387 PRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIAS 466 (549)
T ss_pred chhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeee
Confidence 445677777777666555444432 3677778888888878888999999999999999999999997543 34556
Q ss_pred EEeec
Q 030632 82 VNYAL 86 (174)
Q Consensus 82 V~~a~ 86 (174)
+.||+
T Consensus 467 itYAr 471 (549)
T KOG4660|consen 467 ITYAR 471 (549)
T ss_pred eehhh
Confidence 66664
No 135
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=95.65 E-value=0.005 Score=48.98 Aligned_cols=80 Identities=26% Similarity=0.418 Sum_probs=60.3
Q ss_pred CEEEEcCCCCCChHHH-H--HHhcccCCCeeEEEEecCCC--CCC-cccEEEEEEcCHHHHHHHHHhcCCceecCeEEEE
Q 030632 9 NTLYVGGLAEEVNEAI-L--HAAFIPFGDIKDVKTPLDQA--TQK-HRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTV 82 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~-L--~~~F~~~G~i~~v~~~~~~~--~~~-~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V 82 (174)
.-+||-+|+.....+. | ...|.+||.|..|.+..++. .+. ...-++|+|...++|..||...+|..+.|+.|+.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 4578888887765543 3 25788999999998877652 111 1224899999999999999999999999998887
Q ss_pred EeecCC
Q 030632 83 NYALPE 88 (174)
Q Consensus 83 ~~a~~~ 88 (174)
.+..++
T Consensus 158 ~~gttk 163 (327)
T KOG2068|consen 158 SLGTTK 163 (327)
T ss_pred hhCCCc
Confidence 776543
No 136
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.54 E-value=0.0077 Score=51.83 Aligned_cols=72 Identities=19% Similarity=0.306 Sum_probs=62.0
Q ss_pred CCCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEE
Q 030632 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVN 83 (174)
Q Consensus 4 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~ 83 (174)
+.++.-++||+|+...+....+..++..||.|..+... -|||..|..+.....|+..++-..+.|..+.+.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~---------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~ 106 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRD---------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIEN 106 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhh---------hhcccchhhHHHHHHHHHHhcccCCCcchhhcc
Confidence 44677899999999999999999999999998876442 299999999999999999999888888877765
Q ss_pred e
Q 030632 84 Y 84 (174)
Q Consensus 84 ~ 84 (174)
.
T Consensus 107 ~ 107 (668)
T KOG2253|consen 107 V 107 (668)
T ss_pred c
Confidence 4
No 137
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=95.25 E-value=0.097 Score=32.71 Aligned_cols=67 Identities=21% Similarity=0.355 Sum_probs=39.2
Q ss_pred EEEEc-CCCCCChHHHHHHhcccCCCe-----eEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEE
Q 030632 10 TLYVG-GLAEEVNEAILHAAFIPFGDI-----KDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVN 83 (174)
Q Consensus 10 ~l~V~-nLp~~~t~~~L~~~F~~~G~i-----~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~ 83 (174)
++||. |--..++..+|..++...+.| -.|.+. ..|+||.... ..+..++..|++..+.|++++|.
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~--------~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve 72 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF--------DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVE 72 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE---------SS-EEEEE-T-T-HHHHHHHHTT--SSS----EE
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe--------eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEE
Confidence 55663 334567888888888876544 456663 2489998854 57888999999999999999998
Q ss_pred ee
Q 030632 84 YA 85 (174)
Q Consensus 84 ~a 85 (174)
.|
T Consensus 73 ~A 74 (74)
T PF03880_consen 73 RA 74 (74)
T ss_dssp E-
T ss_pred EC
Confidence 64
No 138
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.25 E-value=0.081 Score=39.19 Aligned_cols=62 Identities=21% Similarity=0.195 Sum_probs=45.6
Q ss_pred HHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcC--CceecCeEEEEEeecCCC
Q 030632 22 EAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMD--GAELYGRVLTVNYALPER 89 (174)
Q Consensus 22 ~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~--g~~~~g~~l~V~~a~~~~ 89 (174)
...|+.+|..|+.+..+..+... +=..|.|.+.+.|..|...|+ +..+.|..|+|.++.+..
T Consensus 9 ~~~l~~l~~~~~~~~~~~~L~sF------rRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 9 LAELEELFSTYDPPVQFSPLKSF------RRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp HHHHHHHHHTT-SS-EEEEETTT------TEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred HHHHHHHHHhcCCceEEEEcCCC------CEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 46799999999998888766442 357899999999999999999 899999999999886543
No 139
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=95.02 E-value=0.098 Score=41.33 Aligned_cols=66 Identities=20% Similarity=0.328 Sum_probs=49.3
Q ss_pred EEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeE-EEEEe
Q 030632 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRV-LTVNY 84 (174)
Q Consensus 11 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~-l~V~~ 84 (174)
|-|-++|+.-. .-|..+|.+||.|...... ..-.+-+|.|.++..|++||.. ||..|.|.. |-|..
T Consensus 200 VTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~------~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkp 266 (350)
T KOG4285|consen 200 VTVFGFPPGQV-SIVLNLFSRCGEVVKHVTP------SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKP 266 (350)
T ss_pred EEEeccCccch-hHHHHHHHhhCeeeeeecC------CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeee
Confidence 44557877643 4578899999999876543 2335899999999999999986 899888755 33444
No 140
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=94.59 E-value=0.12 Score=42.89 Aligned_cols=68 Identities=16% Similarity=0.239 Sum_probs=57.8
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccC-CCeeEEEEecCCCCCCc-ccEEEEEEcCHHHHHHHHHhcCCceecC
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPF-GDIKDVKTPLDQATQKH-RSFGFVTFLEKEDAIQAMDNMDGAELYG 77 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~-G~i~~v~~~~~~~~~~~-~g~afV~f~~~~~a~~al~~l~g~~~~g 77 (174)
+++.|+|-.+|-.++-.+|-.|...| ..|..++++++. .+ +-..+|.|.+..+|......+||..|..
T Consensus 73 ~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~---~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 73 SSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDG---MPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecC---CCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 47889999999999999999998875 578899999863 33 4458899999999999999999988763
No 141
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.13 E-value=1 Score=38.79 Aligned_cols=79 Identities=22% Similarity=0.245 Sum_probs=59.2
Q ss_pred CCCCEEEEcCCCCC-ChHHHHHHhcccC----CCeeEEEEecCC----------CCCC----------------------
Q 030632 6 VQKNTLYVGGLAEE-VNEAILHAAFIPF----GDIKDVKTPLDQ----------ATQK---------------------- 48 (174)
Q Consensus 6 ~~~~~l~V~nLp~~-~t~~~L~~~F~~~----G~i~~v~~~~~~----------~~~~---------------------- 48 (174)
.++++|-|.||.|. +...+|..+|..| |.|.+|.|.... .+|.
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 46789999999985 7778999998876 688888764321 1122
Q ss_pred ---------------cccEEEEEEcCHHHHHHHHHhcCCceecC--eEEEEEe
Q 030632 49 ---------------HRSFGFVTFLEKEDAIQAMDNMDGAELYG--RVLTVNY 84 (174)
Q Consensus 49 ---------------~~g~afV~f~~~~~a~~al~~l~g~~~~g--~~l~V~~ 84 (174)
..-||.|+|.+...|......+.|..|.. ..|-++|
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRF 304 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRF 304 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeee
Confidence 12479999999999999999999998874 4444444
No 142
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=91.74 E-value=0.32 Score=41.58 Aligned_cols=70 Identities=14% Similarity=0.217 Sum_probs=53.9
Q ss_pred CCCEEEEcCCCCCChHHHHHHhccc--CCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCC--ceecCeEEEE
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIP--FGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDG--AELYGRVLTV 82 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g--~~~~g~~l~V 82 (174)
..+.|+|+-||..+-.++++.+|.. |-.+.+|.+-.+- -=||+|.+..+|+.|.+.|.. ..|.|++|..
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~-------nWyITfesd~DAQqAykylreevk~fqgKpImA 246 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND-------NWYITFESDTDAQQAYKYLREEVKTFQGKPIMA 246 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC-------ceEEEeecchhHHHHHHHHHHHHHhhcCcchhh
Confidence 4567788999999999999999985 7788888775442 348999999999999887743 3566666544
Q ss_pred E
Q 030632 83 N 83 (174)
Q Consensus 83 ~ 83 (174)
+
T Consensus 247 R 247 (684)
T KOG2591|consen 247 R 247 (684)
T ss_pred h
Confidence 3
No 143
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=91.72 E-value=0.1 Score=41.42 Aligned_cols=78 Identities=18% Similarity=0.150 Sum_probs=61.4
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
..+++|++++.+.+.+..+..++..+|.+..+.+........++|++.+.|...+.+..|+...-...+.+..+....
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl 164 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDL 164 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcc
Confidence 367899999999999998889999999887777766556788999999999999999999976433455554444433
No 144
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=91.30 E-value=0.15 Score=45.50 Aligned_cols=75 Identities=23% Similarity=0.286 Sum_probs=60.0
Q ss_pred EEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee--cCeEEEEEeecCC
Q 030632 11 LYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAEL--YGRVLTVNYALPE 88 (174)
Q Consensus 11 l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~--~g~~l~V~~a~~~ 88 (174)
.++.|.+-..+-..|..+|+.||.|.+.+..++. ..|.|.|...+.|-.|+..|+|..+ .|-+.+|.++++-
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~------N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~ 374 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL------NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTL 374 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc------cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccc
Confidence 3444555567778899999999999998776553 5899999999999999999999865 4888999998865
Q ss_pred CCC
Q 030632 89 RIK 91 (174)
Q Consensus 89 ~~~ 91 (174)
...
T Consensus 375 ~~~ 377 (1007)
T KOG4574|consen 375 PMY 377 (1007)
T ss_pred ccc
Confidence 443
No 145
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=88.85 E-value=3.7 Score=25.08 Aligned_cols=55 Identities=11% Similarity=0.217 Sum_probs=42.2
Q ss_pred CChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEE
Q 030632 19 EVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTV 82 (174)
Q Consensus 19 ~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V 82 (174)
.++-.+++..+..|+- ..|.. ++ ---||.|.+..+|.+|....+|..+.+.+|.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~~I~~--d~------tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-DRIRD--DR------TGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-ceEEe--cC------CEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4567899999999964 33332 22 23489999999999999999999988887764
No 146
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=85.40 E-value=0.44 Score=36.44 Aligned_cols=35 Identities=14% Similarity=0.256 Sum_probs=30.1
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEE
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVK 39 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~ 39 (174)
.+...+||+-|+|..++++.|..+.+.+|-+..+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 35678999999999999999999999999666554
No 147
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=83.61 E-value=0.04 Score=45.44 Aligned_cols=76 Identities=16% Similarity=0.343 Sum_probs=61.6
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
.++.+-|.|+|+...++.|..++..||.+..|..+. +..-....-|+|...+.+..||..|+|..+....++|.|-
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvn---t~~etavvnvty~~~~~~~~ai~kl~g~Q~en~~~k~~Yi 154 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVN---TDSETAVVNVTYSAQQQHRQAIHKLNGPQLENQHLKVGYI 154 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhc---cchHHHHHHHHHHHHHHHHHHHHhhcchHhhhhhhhcccC
Confidence 356788999999999999999999999999886532 1122234457888999999999999999999988888774
No 148
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=82.46 E-value=3.8 Score=32.43 Aligned_cols=58 Identities=12% Similarity=0.194 Sum_probs=41.4
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCe-eEEEEecCCCCCCcccEEEEEEcCH-------HHHHHHHHhcC
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDI-KDVKTPLDQATQKHRSFGFVTFLEK-------EDAIQAMDNMD 71 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i-~~v~~~~~~~~~~~~g~afV~f~~~-------~~a~~al~~l~ 71 (174)
.+-||++|||..+.-.+|+..+.+.|.+ .++.| ..+.|-||+-|.+. .++.+++..+|
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~isw------kg~~~k~flh~~~~~~~~~~~~~~~~~~~s~~ 395 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECTPMSISW------KGHFGKCFLHFGNRKGVPSTQDDMDKVLKSLN 395 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCCceeEee------ecCCcceeEecCCccCCCCCchHHHHHhccCC
Confidence 4569999999999999999999987754 34444 23467799999654 44555555443
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=81.75 E-value=0.17 Score=41.45 Aligned_cols=74 Identities=16% Similarity=0.102 Sum_probs=54.7
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
+|++|++|+..+...++-.+|..+|.|....+- .+....+|.+.|........|+.. +|..+.-+...+...+|
T Consensus 152 Rt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~-~gre~k~qhsr~ai~kP 225 (479)
T KOG4676|consen 152 RTREVQSLISAAILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRS-HGRERKRQHSRRAIIKP 225 (479)
T ss_pred hhhhhhcchhhhcchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHh-cchhhhhhhhhhhhcCc
Confidence 689999999999999999999999999877664 334455677999888888888875 66666533333333333
No 150
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=80.32 E-value=1.8 Score=31.91 Aligned_cols=78 Identities=17% Similarity=0.183 Sum_probs=55.1
Q ss_pred CCEEEEcCCCCCChH-----HHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCe-EEE
Q 030632 8 KNTLYVGGLAEEVNE-----AILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGR-VLT 81 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~-----~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~-~l~ 81 (174)
.+++++++++..+-. .....+|.+|-......+++ +.++.-|.|.+...|..|...++...|.|+ .++
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lr------sfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k 83 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLR------SFRRVRINFSNPEAAADARIKLHSTSFNGKNELK 83 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHH------hhceeEEeccChhHHHHHHHHhhhcccCCCceEE
Confidence 456788888765332 34556677776665555543 234566899999999999999999999988 777
Q ss_pred EEeecCCCCC
Q 030632 82 VNYALPERIK 91 (174)
Q Consensus 82 V~~a~~~~~~ 91 (174)
.-++.+....
T Consensus 84 ~yfaQ~~~~~ 93 (193)
T KOG4019|consen 84 LYFAQPGHPE 93 (193)
T ss_pred EEEccCCCcc
Confidence 7777654443
No 151
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=76.78 E-value=0.29 Score=41.82 Aligned_cols=73 Identities=14% Similarity=0.114 Sum_probs=54.5
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeE
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRV 79 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~ 79 (174)
..++||+.|++++++-+.|..+++.+..+..+.+...........+++|+|.---...-|+-.||+..+....
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~ 302 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNF 302 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccc
Confidence 3568999999999999999999999876666665433222334567899998777777778888887666544
No 152
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.12 E-value=5.2 Score=33.17 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=44.6
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCC-eeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHh
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGD-IKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~ 69 (174)
..|-|.++|.....++|...|..|+. --.|.|+-+ -++|..|.+...|..||..
T Consensus 392 HVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 392 HVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhhc
Confidence 46778899999999999999999963 346667655 3899999999999999864
No 153
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=75.60 E-value=0.7 Score=35.12 Aligned_cols=67 Identities=39% Similarity=0.571 Sum_probs=54.0
Q ss_pred CCEEEEcC----CCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCcee
Q 030632 8 KNTLYVGG----LAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAEL 75 (174)
Q Consensus 8 ~~~l~V~n----Lp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~ 75 (174)
..+++.|+ |...++.+.+...|+..|.+..+++.+.. .|+.+.++|+++......-.++....+...
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~-d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~ 150 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDN-DGRNRNFGFVTYQRLCAVPFALDLYQGLEL 150 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCccccccc-cCCccCccchhhhhhhcCcHHhhhhcccCc
Confidence 35677777 77788889999999999999999998887 588999999999877777777766555443
No 154
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=73.91 E-value=7.4 Score=26.56 Aligned_cols=57 Identities=23% Similarity=0.236 Sum_probs=30.1
Q ss_pred CEEEEcCCCCCC---------hHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcC-HHHHHHHHH
Q 030632 9 NTLYVGGLAEEV---------NEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLE-KEDAIQAMD 68 (174)
Q Consensus 9 ~~l~V~nLp~~~---------t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~-~~~a~~al~ 68 (174)
.+++|-|+|... +...|...|+.|.++. +..+.++ ..+.|+++|.|.. ..-...|+.
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~--~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGK--QGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEET--TEEEEEEEEE--SSHHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCC--CCCcEEEEEEECCChHHHHHHHH
Confidence 466777886533 4478999999998875 4444443 3578999999974 444445544
No 155
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=72.80 E-value=7.8 Score=23.88 Aligned_cols=60 Identities=15% Similarity=0.191 Sum_probs=41.3
Q ss_pred HHHHHhcccCC-CeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 23 AILHAAFIPFG-DIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 23 ~~L~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
.+|...|...| .+..+..++++.++.+...-||.......... .|+=..++|+++.|...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~ 62 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERP 62 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecC
Confidence 35677788777 67788888888667677788888865433222 34556677888888754
No 156
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=72.00 E-value=6.7 Score=29.29 Aligned_cols=58 Identities=29% Similarity=0.358 Sum_probs=40.3
Q ss_pred CCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHH
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDA 63 (174)
Q Consensus 6 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a 63 (174)
.....+++++++..+....+...|..+|.+....+...........+.++.+.....+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGNEASKDA 280 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccchhHHHhh
Confidence 4567899999999999999999999999997776655542333333444444333333
No 157
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=68.64 E-value=12 Score=22.54 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=15.6
Q ss_pred HHHHHhcccCCCeeEEEE
Q 030632 23 AILHAAFIPFGDIKDVKT 40 (174)
Q Consensus 23 ~~L~~~F~~~G~i~~v~~ 40 (174)
.+|+.+|+..|.|.-+.+
T Consensus 9 ~~iR~~fs~lG~I~vLYv 26 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYV 26 (62)
T ss_pred HHHHHHHHhcCcEEEEEE
Confidence 579999999999987765
No 158
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=68.36 E-value=14 Score=22.59 Aligned_cols=61 Identities=15% Similarity=0.178 Sum_probs=40.6
Q ss_pred HHHHhcccCC-CeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEeecC
Q 030632 24 ILHAAFIPFG-DIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYALP 87 (174)
Q Consensus 24 ~L~~~F~~~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a~~ 87 (174)
+|..-|...| .|..+.-+..+.++......||.+....+.. ..++=..+.+..++|.....
T Consensus 3 ~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k---~i~~Ik~l~~~~V~vE~~~k 64 (68)
T PF07530_consen 3 EIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNK---EIYKIKTLCGQRVKVERPRK 64 (68)
T ss_pred HHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccc---ceeehHhhCCeEEEEecCCC
Confidence 4666666666 6777777777656667778888887554422 23455677788888876643
No 159
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=64.89 E-value=15 Score=29.25 Aligned_cols=79 Identities=15% Similarity=0.302 Sum_probs=55.8
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCC-------CCCCcccEEEEEEcCHHHHHHHH----HhcCC--ce
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQ-------ATQKHRSFGFVTFLEKEDAIQAM----DNMDG--AE 74 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~-------~~~~~~g~afV~f~~~~~a~~al----~~l~g--~~ 74 (174)
+|.|.+.|+...+.--.+-..|.+||+|.+|.++.+. ..........+.|-+...|.... ..|+. ..
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 5678889999999888888889999999999987664 11223456778888887765532 22222 34
Q ss_pred ecCeEEEEEeec
Q 030632 75 LYGRVLTVNYAL 86 (174)
Q Consensus 75 ~~g~~l~V~~a~ 86 (174)
+....|.|.+..
T Consensus 95 L~S~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKSESLTLSFVS 106 (309)
T ss_pred cCCcceeEEEEE
Confidence 667778887764
No 160
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.60 E-value=1 Score=37.58 Aligned_cols=76 Identities=5% Similarity=-0.171 Sum_probs=55.0
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
.+.|+..+|...+..++..+|.-||-|..+.+.+.-+.+...-.+|+... ...+..||.-+....+.|..++|..+
T Consensus 4 ~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 4 MKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhhhhhhhhcC
Confidence 35677888999999999999999999988877555444555556777764 35566677666666667766666655
No 161
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=58.37 E-value=25 Score=22.65 Aligned_cols=48 Identities=25% Similarity=0.321 Sum_probs=32.0
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEc
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFL 58 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~ 58 (174)
..-||||+++..+.+.-...+....+.-.-+-+.... ...||.|-++.
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~G~a~m~~~~~---neqG~~~~t~G 72 (86)
T PF09707_consen 25 RPGVYVGNVSARVRERLWERVTEWIGDGSAVMVWSDN---NEQGFDFRTLG 72 (86)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHhhCCCccEEEEEccC---CCCCEEEEEeC
Confidence 4569999999988887655555555544444444432 26789998874
No 162
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=56.70 E-value=11 Score=29.89 Aligned_cols=36 Identities=31% Similarity=0.616 Sum_probs=28.3
Q ss_pred CCCEEEEcCCCCC------------ChHHHHHHhcccCCCeeEEEEec
Q 030632 7 QKNTLYVGGLAEE------------VNEAILHAAFIPFGDIKDVKTPL 42 (174)
Q Consensus 7 ~~~~l~V~nLp~~------------~t~~~L~~~F~~~G~i~~v~~~~ 42 (174)
...|||+.+||-. .++.-|+..|..||.|..|.|+.
T Consensus 148 rpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipi 195 (445)
T KOG2891|consen 148 RPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPI 195 (445)
T ss_pred CCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcc
Confidence 4568999999843 34577999999999999888753
No 163
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=51.15 E-value=27 Score=28.83 Aligned_cols=70 Identities=19% Similarity=0.222 Sum_probs=47.3
Q ss_pred CCCEEEEcCCCCCChHHHHHHhcccCCC-eeEEEEecCCCC--CCcccEEEEEEcCHHHHHHHHHhcCCceec
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFGD-IKDVKTPLDQAT--QKHRSFGFVTFLEKEDAIQAMDNMDGAELY 76 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~-i~~v~~~~~~~~--~~~~g~afV~f~~~~~a~~al~~l~g~~~~ 76 (174)
-...+.|.+||+..+..+|.....+|-. +....+.....+ ....+.++|.|........-...++|+.|.
T Consensus 6 ~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 6 AKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred cceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 3457889999999999988887777532 222222211100 123567999999999988888888887654
No 164
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=46.04 E-value=11 Score=31.27 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=47.0
Q ss_pred CCEEEEcCCCCCChH--------HHHHHhccc--CCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHh
Q 030632 8 KNTLYVGGLAEEVNE--------AILHAAFIP--FGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~--------~~L~~~F~~--~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~ 69 (174)
.+.+|+.+++..... .++..+|.. .+.+..+..-++......+|-.|+.|.....+++.+..
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn~ 245 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNNG 245 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhcc
Confidence 456777777665443 489999998 67777777766655566788899999999999988753
No 165
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=45.65 E-value=37 Score=22.41 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=30.0
Q ss_pred CCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcC
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLE 59 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~ 59 (174)
..-||||+++..+.+.--..+-..++.-.-+-+... ..-.||.|-++..
T Consensus 27 ~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~~~---~~eqG~~~~t~G~ 75 (97)
T PRK11558 27 RAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAWAT---NTESGFEFQTFGE 75 (97)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEEcC---CCCCCcEEEecCC
Confidence 346899999988887644444444444333333333 2344999998864
No 166
>PRK11901 hypothetical protein; Reviewed
Probab=43.07 E-value=71 Score=25.92 Aligned_cols=63 Identities=11% Similarity=0.106 Sum_probs=38.9
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcccEEE--EEEcCHHHHHHHHHhcCC
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGF--VTFLEKEDAIQAMDNMDG 72 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~af--V~f~~~~~a~~al~~l~g 72 (174)
+....+|-|..+. ....|..|...++ +..+.++.....|+.. |.. -.|.+.+.|..|+..|..
T Consensus 242 p~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGkpW-YVVvyG~Y~Sr~eAk~Ai~sLPa 306 (327)
T PRK11901 242 PASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGKPW-YVLVSGNYASSAEAKRAIATLPA 306 (327)
T ss_pred CCCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCceE-EEEEecCcCCHHHHHHHHHhCCH
Confidence 3445567666653 3566777777665 3445554443344432 433 368899999999999863
No 167
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=42.57 E-value=19 Score=23.30 Aligned_cols=26 Identities=27% Similarity=0.441 Sum_probs=21.2
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcc
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFI 30 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~ 30 (174)
..++++|.|.|||....++.|+..+.
T Consensus 49 ~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 49 GVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred cccCCEEEEeCCCCCCChhhheeeEE
Confidence 35678999999999999998885543
No 168
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=41.12 E-value=92 Score=19.65 Aligned_cols=36 Identities=14% Similarity=0.282 Sum_probs=25.1
Q ss_pred CeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCce
Q 030632 34 DIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAE 74 (174)
Q Consensus 34 ~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~ 74 (174)
.|.++..+ ...+||-||+=.+......|+..+.+..
T Consensus 33 ~I~Si~~~-----~~lkGyIyVEA~~~~~V~~ai~gi~~i~ 68 (84)
T PF03439_consen 33 NIYSIFAP-----DSLKGYIYVEAERESDVKEAIRGIRHIR 68 (84)
T ss_dssp ---EEEE------TTSTSEEEEEESSHHHHHHHHTT-TTEE
T ss_pred ceEEEEEe-----CCCceEEEEEeCCHHHHHHHHhccccee
Confidence 45566553 3478999999999999999998876543
No 169
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=36.71 E-value=61 Score=24.06 Aligned_cols=44 Identities=25% Similarity=0.153 Sum_probs=30.1
Q ss_pred HHHHHhcccCCCeeEEEEecCCCCC--CcccEEEEEEcCHHHHHHHHHh
Q 030632 23 AILHAAFIPFGDIKDVKTPLDQATQ--KHRSFGFVTFLEKEDAIQAMDN 69 (174)
Q Consensus 23 ~~L~~~F~~~G~i~~v~~~~~~~~~--~~~g~afV~f~~~~~a~~al~~ 69 (174)
.+|..+-+ |.+..+.+-+.. .+ ..+|-.||+|.+...|.+++..
T Consensus 124 ~~l~qw~~--~k~~nv~mr~~~-~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 124 DDLNQWAS--GKGHNVKMRRHG-NKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred HHHHHHhc--ccceEeeccccC-CCCCCCCCceEEEeecHHHHHhhhhh
Confidence 34444444 778777664433 33 4578899999999999887765
No 170
>PF05189 RTC_insert: RNA 3'-terminal phosphate cyclase (RTC), insert domain; InterPro: IPR013796 RNA cyclases are a family of RNA-modifying enzymes that are conserved in eukaryotes, bacteria and archaea. RNA 3'-terminal phosphate cyclase (6.5.1.4 from EC) [, ] catalyses the conversion of 3'-phosphate to a 2',3'-cyclic phosphodiester at the end of RNA. ATP + RNA 3'-terminal-phosphate = AMP + diphosphate + RNA terminal-2',3'-cyclic-phosphate These enzymes might be responsible for production of the cyclic phosphate RNA ends that are known to be required by many RNA ligases in both prokaryotes and eukaryotes. RNA cyclase is a protein of from 36 to 42 kDa. The best conserved region is a glycine-rich stretch of residues located in the central part of the sequence and which is reminiscent of various ATP, GTP or AMP glycine-rich loops. The crystal structure of RNA 3'-terminal phosphate cyclase shows that each molecule consists of two domains. The larger domain contains three repeats of a folding unit comprising two parallel alpha helices and a four-stranded beta sheet; this fold was previously identified in translation initiation factor 3 (IF3). The large domain is similar to one of the two domains of 5-enolpyruvylshikimate-3-phosphate synthase and UDP-N-acetylglucosamine enolpyruvyl transferase. The smaller domain uses a similar secondary structure element with different topology, observed in many other proteins such as thioredoxin []. Although the active site of this enzyme could not be unambiguously assigned, it can be mapped to a region surrounding His309, an adenylate acceptor, in which a number of amino acids are highly conserved in the enzyme from different sources []. This entry contains the insert-domain of approximately 100 amino acids.; PDB: 3TV1_B 3KGD_D 1QMI_D 1QMH_B 3TUX_A 3TUT_A 3TW3_A 3PQV_A.
Probab=36.37 E-value=1.2e+02 Score=19.73 Aligned_cols=49 Identities=16% Similarity=0.181 Sum_probs=29.9
Q ss_pred EEEEcCCCCCChHH---HHHHhcccCCCeeEEEE--ecCCCCCCcccEEEEEEc
Q 030632 10 TLYVGGLAEEVNEA---ILHAAFIPFGDIKDVKT--PLDQATQKHRSFGFVTFL 58 (174)
Q Consensus 10 ~l~V~nLp~~~t~~---~L~~~F~~~G~i~~v~~--~~~~~~~~~~g~afV~f~ 58 (174)
..|+.+||..+.+. ..+..|..++.-..|.. ......+.+.|++.+.+.
T Consensus 12 ~a~~a~lp~~va~R~~~~a~~~L~~~~~~v~i~~d~~~~~~~~~~~G~gi~l~a 65 (103)
T PF05189_consen 12 IAFVAGLPSSVAERMANAARKRLNWYGPDVEIETDYRESDDSAFGPGSGISLVA 65 (103)
T ss_dssp EEEEESS-CHHHHHHHHHHHHHHCTTCSEEEEEEEEE-CCCCGCSSEEEEEEEE
T ss_pred EEEEcCCCHHHHHHHHHHHHHHhhhhCCCeEEEEecccCccCCCCCceEEEEEE
Confidence 46889999988874 45566666665445543 122335667788776664
No 171
>PF00054 Laminin_G_1: Laminin G domain; InterPro: IPR012679 Laminins are large heterotrimeric glycoproteins involved in basement membrane function []. The laminin globular (G) domain can be found in one to several copies in various laminin family members, which includes a large number of extracellular proteins. The C terminus of laminin alpha chain contains a tandem repeat of five laminin G domains, which are critical for heparin-binding and cell attachment activity []. Laminin alpha4 is distributed in a variety of tissues including peripheral nerves, dorsal root ganglion, skeletal muscle and capillaries; in the neuromuscular junction, it is required for synaptic specialisation []. The structure of the laminin-G domain has been predicted to resemble that of pentraxin []. Laminin G domains can vary in their function, and a variety of binding functions has been ascribed to different LamG modules. For example, the laminin alpha1 and alpha2 chains each has five C-teminal laminin G domains, where only domains LG4 and LG5 contain binding sites for heparin, sulphatides and the cell surface receptor dystroglycan []. Laminin G-containing proteins appear to have a wide variety of roles in cell adhesion, signalling, migration, assembly and differentiation. This entry represents one subtype of laminin G domains, which is sometimes found in association with thrombospondin-type laminin G domains (IPR012680 from INTERPRO).; PDB: 1OKQ_A 1DYK_A 2C5D_A 1H30_A 1LHW_A 1KDK_A 1LHU_A 1KDM_A 1LHO_A 1D2S_A ....
Probab=35.19 E-value=13 Score=25.47 Aligned_cols=10 Identities=60% Similarity=1.122 Sum_probs=8.6
Q ss_pred CCEEEEcCCC
Q 030632 8 KNTLYVGGLA 17 (174)
Q Consensus 8 ~~~l~V~nLp 17 (174)
...||||++|
T Consensus 92 ~~~lyvGG~p 101 (131)
T PF00054_consen 92 DGPLYVGGLP 101 (131)
T ss_dssp CSEEEESSSS
T ss_pred ccCEEEccCC
Confidence 4569999999
No 172
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=32.03 E-value=32 Score=21.07 Aligned_cols=17 Identities=12% Similarity=0.270 Sum_probs=13.2
Q ss_pred CCCEEEEcCCCCCChHH
Q 030632 7 QKNTLYVGGLAEEVNEA 23 (174)
Q Consensus 7 ~~~~l~V~nLp~~~t~~ 23 (174)
-++++|||++|..+-.+
T Consensus 26 tSr~vflG~IP~~W~~~ 42 (67)
T PF15407_consen 26 TSRRVFLGPIPEIWLQD 42 (67)
T ss_pred cCceEEECCCChHHHHc
Confidence 36899999999866543
No 173
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=30.95 E-value=92 Score=20.12 Aligned_cols=49 Identities=27% Similarity=0.228 Sum_probs=27.0
Q ss_pred CCEEEEcCCCCCChHHHHHHhccc-CCCeeEEEEecCCCCCCcccEEEEEEcC
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIP-FGDIKDVKTPLDQATQKHRSFGFVTFLE 59 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~~-~G~i~~v~~~~~~~~~~~~g~afV~f~~ 59 (174)
..-||||+++..+.+.--..+-.. .+.-.-+-+.. +..-.||.|-++..
T Consensus 25 ~~GVyVg~~s~rVRe~lW~~v~~~~~~~G~avm~~~---~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRERIWDYLAQHCPPKGSLVITWS---SNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHHHHHHHHHhCCCCccEEEEEe---CCCCCCcEEEecCC
Confidence 356999999988777532222222 23222222222 23456799888754
No 174
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=30.61 E-value=1.5e+02 Score=18.96 Aligned_cols=57 Identities=16% Similarity=0.161 Sum_probs=38.9
Q ss_pred EEEEcCCCCCChHHHHHHhccc-CC-CeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHh
Q 030632 10 TLYVGGLAEEVNEAILHAAFIP-FG-DIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69 (174)
Q Consensus 10 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~ 69 (174)
.-|+--++..++..+|+..+.. || .|..|.....+ ...-=|||++..-..|......
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~---~~~KKA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITP---KGEKKAYVKLAEEYDAEEIASR 80 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCcEEEEEEeCCCCcHHHHHHh
Confidence 3455567888898888888876 55 66676655443 1223599999887777766544
No 175
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=29.39 E-value=1.5e+02 Score=18.59 Aligned_cols=57 Identities=12% Similarity=0.134 Sum_probs=38.8
Q ss_pred EEEEcCCCCCChHHHHHHhccc-CC-CeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHh
Q 030632 10 TLYVGGLAEEVNEAILHAAFIP-FG-DIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDN 69 (174)
Q Consensus 10 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~ 69 (174)
.-|+-.++..++..+|+..+.. || .|..|....-+ ...-=|||++..-..|......
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~---~~~KKA~VtL~~g~~a~~va~k 73 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITP---RGEKKAYVKLAEEYAAEEIASR 73 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcC---CCceEEEEEECCCCcHHHHHHh
Confidence 4566678889999999988876 55 56666554443 1223599999877777665544
No 176
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=29.00 E-value=96 Score=26.68 Aligned_cols=62 Identities=13% Similarity=0.077 Sum_probs=45.7
Q ss_pred CEEEEcCCCCCC---hHHHHHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEE
Q 030632 9 NTLYVGGLAEEV---NEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVL 80 (174)
Q Consensus 9 ~~l~V~nLp~~~---t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l 80 (174)
.==+||||+.-. ....+..+-.+||+|-.+.+-. .-.|...+.+.|+.|+.. ++..+.+|+.
T Consensus 33 ~lPiIGnl~~l~~~~~h~~~~~ls~~yGpi~tl~lG~---------~~~Vviss~~~akE~l~~-~d~~fa~Rp~ 97 (489)
T KOG0156|consen 33 PLPIIGNLHQLGSLPPHRSFRKLSKKYGPVFTLRLGS---------VPVVVISSYEAAKEVLVK-QDLEFADRPD 97 (489)
T ss_pred CCCccccHHHcCCCchhHHHHHHHHHhCCeEEEEecC---------ceEEEECCHHHHHHHHHh-CCccccCCCC
Confidence 334588887532 3456777777899999877621 246777889999999987 7888988886
No 177
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=28.85 E-value=72 Score=19.41 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=20.7
Q ss_pred EEEEEEcCHHHHHHHHHhcCCceecCe
Q 030632 52 FGFVTFLEKEDAIQAMDNMDGAELYGR 78 (174)
Q Consensus 52 ~afV~f~~~~~a~~al~~l~g~~~~g~ 78 (174)
+.+|+|.+...|.+|-+.|....+..+
T Consensus 3 ~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 3 YYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred eEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 679999999999998887765554333
No 178
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=28.66 E-value=2.7e+02 Score=24.84 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=48.1
Q ss_pred EEEEc-CCCCCChHHHHHHhcccCCCeeE-----EEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEE
Q 030632 10 TLYVG-GLAEEVNEAILHAAFIPFGDIKD-----VKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVN 83 (174)
Q Consensus 10 ~l~V~-nLp~~~t~~~L~~~F~~~G~i~~-----v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~ 83 (174)
++||. |--..++..+|-.++..-+.|.. |.|. ..|.||+.. ...+...+..|++..+.|+.|.|.
T Consensus 488 ~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~~ig~i~i~--------~~~s~v~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 558 (629)
T PRK11634 488 LYRIEVGRDDGVEVRHIVGAIANEGDISSRYIGNIKLF--------ASHSTIELP-KGMPGEVLQHFTRTRILNKPMNMQ 558 (629)
T ss_pred EEEEecccccCCCHHHHHHHHHhhcCCChhhCCcEEEe--------CCceEEEcC-hhhHHHHHHHhccccccCCceEEE
Confidence 34442 33446778888877776655543 3332 348899884 456888899999999999999999
Q ss_pred eec
Q 030632 84 YAL 86 (174)
Q Consensus 84 ~a~ 86 (174)
.+.
T Consensus 559 ~~~ 561 (629)
T PRK11634 559 LLG 561 (629)
T ss_pred ECC
Confidence 875
No 179
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=28.60 E-value=80 Score=24.80 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=23.0
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCeeEE
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDIKDV 38 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v 38 (174)
....|+|||++++..-|..++...-.+...
T Consensus 96 ~~~vVaNlPY~Isspii~kll~~~~~~~~~ 125 (259)
T COG0030 96 PYKVVANLPYNISSPILFKLLEEKFIIQDM 125 (259)
T ss_pred CCEEEEcCCCcccHHHHHHHHhccCccceE
Confidence 456799999999999888888775444333
No 180
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=28.34 E-value=48 Score=25.70 Aligned_cols=29 Identities=28% Similarity=0.508 Sum_probs=22.2
Q ss_pred CCEEEEcCCCCCChHHHHHHhcc--cCCCee
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFI--PFGDIK 36 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~L~~~F~--~~G~i~ 36 (174)
..-++|||||+.++..-|..++. .||.+.
T Consensus 97 ~~~~vv~NlPy~is~~il~~ll~~~~~g~~~ 127 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILRKLLELYRFGRVR 127 (262)
T ss_dssp SEEEEEEEETGTGHHHHHHHHHHHGGGCEEE
T ss_pred CceEEEEEecccchHHHHHHHhhcccccccc
Confidence 34678999999999988888886 444443
No 181
>PRK11230 glycolate oxidase subunit GlcD; Provisional
Probab=27.35 E-value=2.4e+02 Score=24.27 Aligned_cols=49 Identities=20% Similarity=0.120 Sum_probs=34.4
Q ss_pred HHHHHHhcc----cCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcC
Q 030632 22 EAILHAAFI----PFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMD 71 (174)
Q Consensus 22 ~~~L~~~F~----~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~ 71 (174)
.-+|..+|. .+|-|..+.+...| ........++.|.+..++..++..+.
T Consensus 203 g~dl~~l~~Gs~GtlGIIt~atlkl~p-~p~~~~~~~~~f~~~~~a~~~~~~~~ 255 (499)
T PRK11230 203 GFDLLALFTGSEGMLGVVTEVTVKLLP-KPPVARVLLASFDSVEKAGLAVGDII 255 (499)
T ss_pred ccchHhhhccCCCccEEEEEEEEEEEc-CCcceEEEEEECCCHHHHHHHHHHHH
Confidence 345666665 57888888776555 23345677889999999988887653
No 182
>KOG3003 consensus Molecular chaperone of the GrpE family [Posttranslational modification, protein turnover, chaperones]
Probab=27.19 E-value=1.4e+02 Score=23.11 Aligned_cols=53 Identities=23% Similarity=0.129 Sum_probs=33.4
Q ss_pred ChHHHHHHhcccCCCeeEEE------------EecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEEEe
Q 030632 20 VNEAILHAAFIPFGDIKDVK------------TPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 20 ~t~~~L~~~F~~~G~i~~v~------------~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~ 84 (174)
+++..|...|.++|-+.--- ++.-+..++..|..+..+. -|+.++||.|+...
T Consensus 162 mte~ql~~vf~KhGLekldPigekFDPn~HEAvfq~p~~~k~pgtV~~v~k------------~Gy~L~~R~IRPA~ 226 (236)
T KOG3003|consen 162 MTEAQLKEVFAKHGLEKLDPIGEKFDPNEHEAVFQVPDAAKEPGTVALVTK------------KGYKLNGRVIRPAM 226 (236)
T ss_pred HHHHHHHHHHHHcCceecCCCCCCCCcchhheeEeccccCCCCCeEEEEec------------cCcccCCeeechhh
Confidence 47889999999999554211 1111223355666666553 48888898887543
No 183
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=26.85 E-value=68 Score=25.48 Aligned_cols=31 Identities=26% Similarity=0.239 Sum_probs=22.2
Q ss_pred EEEEEcCHHHHHHHHHhcCCceecCeEEEEEee
Q 030632 53 GFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 53 afV~f~~~~~a~~al~~l~g~~~~g~~l~V~~a 85 (174)
|||+|.+...|..|+..+.... ++.+.+..|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeC
Confidence 7999999999999998654332 244455555
No 184
>COG5584 Predicted small secreted protein [Function unknown]
Probab=26.11 E-value=1.6e+02 Score=19.43 Aligned_cols=30 Identities=20% Similarity=0.266 Sum_probs=23.2
Q ss_pred CCCCCChHHHHHHhcccCCCeeEEEEecCC
Q 030632 15 GLAEEVNEAILHAAFIPFGDIKDVKTPLDQ 44 (174)
Q Consensus 15 nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~ 44 (174)
|+++..--.-++..|+++|+|....+...|
T Consensus 29 ~is~e~alk~vk~afk~~mnI~GSwI~~~p 58 (103)
T COG5584 29 NISRENALKVVKEAFKQFMNIKGSWIVYEP 58 (103)
T ss_pred ccChhHHHHHHHHHhcccCCcceeEEEEec
Confidence 455555567789999999999987776665
No 185
>PF14812 PBP1_TM: Transmembrane domain of transglycosylase PBP1 at N-terminal; PDB: 3FWL_A 3VMA_A.
Probab=25.69 E-value=23 Score=22.58 Aligned_cols=16 Identities=25% Similarity=0.692 Sum_probs=0.0
Q ss_pred cccCCCCCChhhHHHH
Q 030632 150 EEDSEMKDDPMARAEA 165 (174)
Q Consensus 150 e~~~~~~~~~~~~~~~ 165 (174)
++++++++++|.....
T Consensus 43 D~dDdeeee~m~rK~k 58 (81)
T PF14812_consen 43 DDDDDEEEEPMPRKGK 58 (81)
T ss_dssp ----------------
T ss_pred cccchhhccccccccc
Confidence 3334456677765543
No 186
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=23.58 E-value=23 Score=32.90 Aligned_cols=10 Identities=20% Similarity=0.235 Sum_probs=4.7
Q ss_pred cCCCCCChHH
Q 030632 14 GGLAEEVNEA 23 (174)
Q Consensus 14 ~nLp~~~t~~ 23 (174)
-|+-|.+...
T Consensus 1248 dGvLWDvR~~ 1257 (1516)
T KOG1832|consen 1248 DGVLWDVRIP 1257 (1516)
T ss_pred CceeeeeccH
Confidence 4555554443
No 187
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=23.51 E-value=31 Score=27.05 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=46.8
Q ss_pred CCEEEEcCCCCCChHHH---HHHhcccCCCeeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCCceecCeEEEE
Q 030632 8 KNTLYVGGLAEEVNEAI---LHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTV 82 (174)
Q Consensus 8 ~~~l~V~nLp~~~t~~~---L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g~~~~g~~l~V 82 (174)
-..++++++-..+...- +...|+.|-.+....++++. -+..++++|+.|.......++-..-++..+....+++
T Consensus 96 vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~-p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 96 VFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDR-PQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccCCCCCCcchhhhccchhhhhhhhhhcC-CCccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 34556666655444433 25667777666666666665 5677899999998777666666555666665554443
No 188
>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain. The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.
Probab=22.90 E-value=99 Score=17.31 Aligned_cols=27 Identities=15% Similarity=0.096 Sum_probs=21.5
Q ss_pred CEEEEcCCCCCChHHHHHHhcccCCCe
Q 030632 9 NTLYVGGLAEEVNEAILHAAFIPFGDI 35 (174)
Q Consensus 9 ~~l~V~nLp~~~t~~~L~~~F~~~G~i 35 (174)
.++||.+.........|..++..+|.-
T Consensus 2 ~~~~i~g~~~~~~~~~l~~~i~~~Gg~ 28 (72)
T cd00027 2 LTFVITGDLPSEERDELKELIEKLGGK 28 (72)
T ss_pred CEEEEEecCCCcCHHHHHHHHHHcCCE
Confidence 467888877677888899999998863
No 189
>PRK12280 rplW 50S ribosomal protein L23; Reviewed
Probab=22.71 E-value=1.9e+02 Score=20.91 Aligned_cols=33 Identities=15% Similarity=0.117 Sum_probs=24.4
Q ss_pred EEEEcCCCCCChHHHHHHhccc-CC-CeeEEEEec
Q 030632 10 TLYVGGLAEEVNEAILHAAFIP-FG-DIKDVKTPL 42 (174)
Q Consensus 10 ~l~V~nLp~~~t~~~L~~~F~~-~G-~i~~v~~~~ 42 (174)
+.|+-.+++.++..+|+..|.. || .|..|..+.
T Consensus 23 N~ytF~V~~~anK~eIK~AVE~iF~VkV~~VNT~~ 57 (158)
T PRK12280 23 NVYTFKVDRRANKIEIKKAVEFIFKVKVLKVNIFN 57 (158)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEe
Confidence 5677788999999999988876 55 556665443
No 190
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=22.35 E-value=2.9e+02 Score=19.52 Aligned_cols=33 Identities=15% Similarity=0.216 Sum_probs=25.3
Q ss_pred eeEEEEecCCCCCCcccEEEEEEcCHHHHHHHHHhcCC
Q 030632 35 IKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDG 72 (174)
Q Consensus 35 i~~v~~~~~~~~~~~~g~afV~f~~~~~a~~al~~l~g 72 (174)
|.+|.++.. ..||.||.......+..++..+.+
T Consensus 36 i~~i~vp~~-----fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPE-----LKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCC-----CCcEEEEEEEChHHHHHHHhcCCC
Confidence 566666543 689999999878888888877655
No 191
>PRK10905 cell division protein DamX; Validated
Probab=21.20 E-value=2.4e+02 Score=22.95 Aligned_cols=64 Identities=13% Similarity=-0.004 Sum_probs=36.7
Q ss_pred CCCCCEEEEcCCCCCChHHHHHHhcccCCCeeEEEEecCCCCCCcc-cEEEEEEcCHHHHHHHHHhcCC
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHR-SFGFVTFLEKEDAIQAMDNMDG 72 (174)
Q Consensus 5 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~~~~~~~~~~~~-g~afV~f~~~~~a~~al~~l~g 72 (174)
+....+|-|+.+... ..|..|..+.|- ....++.....|... -.-+-.|.+..+|.+|+..|..
T Consensus 244 pa~~YTLQL~A~Ss~---~~l~~fakKlgL-~~y~vy~TtRnGkpWYVV~yG~YaSraeAk~AiakLPa 308 (328)
T PRK10905 244 PSSHYTLQLSSSSNY---DNLNGWAKKENL-KNYVVYETTRNGQPWYVLVSGVYASKEEAKRAVSTLPA 308 (328)
T ss_pred CCCceEEEEEecCCH---HHHHHHHHHcCC-CceEEEEeccCCceEEEEEecCCCCHHHHHHHHHHCCH
Confidence 344567777776554 446666666543 222233222234322 1233468899999999999863
No 192
>PF07230 Peptidase_S80: Bacteriophage T4-like capsid assembly protein (Gp20); InterPro: IPR010823 This family of proteins is essential for capsid assembly in the T4-like bacteriophages []. Gp20 forms a unique 12 subunit portal vertex through which DNA enters during packaging and exits during infection. The Gp20 vertex acts as an initiator for the assembly of the major capsid protein and the scaffolding proteins into a prolate icosahedron of precise dimensions. The regulation of portal protein gene expression is an important regulator of prohead assembly in bacteriophage T4 [].
Probab=21.08 E-value=87 Score=26.96 Aligned_cols=26 Identities=19% Similarity=0.425 Sum_probs=20.7
Q ss_pred CCCEEE---EcCCCCCChHHHHHHhcccC
Q 030632 7 QKNTLY---VGGLAEEVNEAILHAAFIPF 32 (174)
Q Consensus 7 ~~~~l~---V~nLp~~~t~~~L~~~F~~~ 32 (174)
|.++|| |||||..-.+..|+.+..+|
T Consensus 274 PeRRvFyIDvGnlpk~KAeqyl~~iM~k~ 302 (501)
T PF07230_consen 274 PERRVFYIDVGNLPKQKAEQYLRDIMNKY 302 (501)
T ss_pred ccceEEEEECCCCChHhHHHHHHHHHHHh
Confidence 445544 69999998999999988877
No 193
>PF07767 Nop53: Nop53 (60S ribosomal biogenesis); InterPro: IPR011687 This entry contains sequences that bear similarity to the glioma tumour suppressor candidate region gene 2 protein (p60) []. This protein has been found to interact with herpes simplex type 1 regulatory proteins, but its exact role in the life cycle of the virus is not known [].
Probab=20.83 E-value=4.3e+02 Score=21.79 Aligned_cols=22 Identities=14% Similarity=0.255 Sum_probs=15.2
Q ss_pred CCCCCCCCCccccchhHHHHHH
Q 030632 92 GGEQGWAAQPIWADADTWFERQ 113 (174)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~ 113 (174)
-...|.|++|...+....+...
T Consensus 180 ~Ph~G~SYNP~~edhqelL~~a 201 (387)
T PF07767_consen 180 VPHPGQSYNPSFEDHQELLAKA 201 (387)
T ss_pred cCCCCCCCCcCHHHHHHHHHHH
Confidence 3467889999877766655544
No 194
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=20.67 E-value=2e+02 Score=18.38 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=18.5
Q ss_pred eeEEEEecCCCCCCcccEEEEEEcC
Q 030632 35 IKDVKTPLDQATQKHRSFGFVTFLE 59 (174)
Q Consensus 35 i~~v~~~~~~~~~~~~g~afV~f~~ 59 (174)
|..+++..-...|+.++||-|+|.+
T Consensus 3 itdVri~~~~~~~~lka~asV~~dd 27 (84)
T PF04026_consen 3 ITDVRIRKIEPEGKLKAFASVTFDD 27 (84)
T ss_dssp EEEEEEEETTSSSSEEEEEEEEETT
T ss_pred cEEEEEEEecCCCCEEEEEEEEECC
Confidence 5667765544458889999999975
No 195
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=20.66 E-value=1.2e+02 Score=18.31 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=22.9
Q ss_pred HHHHHHhcccCCCeeEEEEecCCCCCCcccEEEE
Q 030632 22 EAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFV 55 (174)
Q Consensus 22 ~~~L~~~F~~~G~i~~v~~~~~~~~~~~~g~afV 55 (174)
+..|.++|-+-..|..+.+...+.- .+|-|||
T Consensus 32 e~eler~fl~~P~v~e~~l~EKKri--~~G~gyV 63 (64)
T PF13046_consen 32 EVELERHFLPLPEVKEVALYEKKRI--RKGAGYV 63 (64)
T ss_pred HHHhhhhccCCCCceEEEEEEEEee--eCCceeE
Confidence 4678888988889999988766533 3455554
Done!