Query 030632
Match_columns 174
No_of_seqs 178 out of 2038
Neff 8.9
Searched_HMMs 29240
Date Tue Mar 26 18:32:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/030632.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2332-2336//hhsearch_pdb/030632hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fxv_A ELAV-like protein 1; RN 1.0 1 1 125.5 10.4 82 6-87 17-98 (99)
2 3pgw_S U1-70K; protein-RNA com 1.0 1 1 122.8 11.9 85 6-90 100-184 (437)
3 3s8s_A Histone-lysine N-methyl 1.0 1 1 119.4 11.2 84 5-88 3-86 (110)
4 1rk8_A CG8781-PA, CG8781-PA pr 1.0 1 1 119.1 10.2 87 6-92 70-156 (165)
5 3q2s_C Cleavage and polyadenyl 1.0 1 1 119.0 8.1 81 7-87 67-149 (229)
6 2lxi_A RNA-binding protein 10; 1.0 1 1 118.2 6.8 84 8-91 1-86 (91)
7 4f25_A Polyadenylate-binding p 1.0 1 1 117.4 9.6 85 5-91 2-86 (115)
8 2kxn_B Transformer-2 protein h 1.0 1 1 117.3 8.5 87 4-90 42-128 (129)
9 1u6f_A Tcubp1, RNA-binding pro 1.0 1 1 117.2 10.7 90 5-94 39-128 (139)
10 2kn4_A Immunoglobulin G-bindin 1.0 1 1 117.1 11.1 88 6-93 68-155 (158)
No 1
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=125.48 Aligned_cols=82 Identities=26% Similarity=0.501 Sum_probs=78.6
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEEE
Q ss_conf 99997998299998829999983144998469997117999995208999970779899999823995124859799853
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~i~V~~Lp~~~~~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 85 (174)
..+++|||+|||+.+++.+|+.+|++||.|..+.+++++.+|.++|||||+|.+.++|.+|+..|||..|.|++|+|.||
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~A 96 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYA 96 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEE
T ss_conf 78999999399998999999999971498888675453888950621899987999999999984899899999899970
Q ss_pred CC
Q ss_conf 17
Q 030632 86 LP 87 (174)
Q Consensus 86 ~~ 87 (174)
+|
T Consensus 97 kP 98 (99)
T 4fxv_A 97 RP 98 (99)
T ss_dssp CB
T ss_pred EC
T ss_conf 18
No 2
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=1.00 E-value=1 Score=122.79 Aligned_cols=85 Identities=22% Similarity=0.391 Sum_probs=79.4
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEEE
Q ss_conf 99997998299998829999983144998469997117999995208999970779899999823995124859799853
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~i~V~~Lp~~~~~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 85 (174)
.+.++|||+|||+.+++.+|..+|++||.|..|.|+.++.++.++|||||+|.+...|..||..|||+.|.|+.|.|.|+
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a 179 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVE 179 (437)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEEE
T ss_conf 99987998489998999999999987098648774115888973515888623589999999975898889988899881
Q ss_pred CCCCC
Q ss_conf 17888
Q 030632 86 LPERI 90 (174)
Q Consensus 86 ~~~~~ 90 (174)
.+...
T Consensus 180 ~~~~~ 184 (437)
T 3pgw_S 180 RGRTV 184 (437)
T ss_pred CCCCC
T ss_conf 78888
No 3
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=1.00 E-value=1 Score=119.37 Aligned_cols=84 Identities=18% Similarity=0.346 Sum_probs=79.8
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEE
Q ss_conf 99999799829999882999998314499846999711799999520899997077989999982399512485979985
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 5 ~~~~~~i~V~~Lp~~~~~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 84 (174)
+++.++|||+|||+.+++.+|+.+|++||.|..+.+++++.++.++|||||+|.+.++|..|+..|||..|.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEE
T ss_conf 89983899979999999999999998569744899977799994606999998979999999998489988980899998
Q ss_pred ECCC
Q ss_conf 3178
Q 030632 85 ALPE 88 (174)
Q Consensus 85 a~~~ 88 (174)
+...
T Consensus 83 a~~~ 86 (110)
T 3s8s_A 83 DIKG 86 (110)
T ss_dssp CSTT
T ss_pred CCCC
T ss_conf 8887
No 4
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=1.00 E-value=1 Score=119.12 Aligned_cols=87 Identities=25% Similarity=0.509 Sum_probs=80.7
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEEE
Q ss_conf 99997998299998829999983144998469997117999995208999970779899999823995124859799853
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~i~V~~Lp~~~~~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 85 (174)
.++++|||+|||+.+++.+|+.+|++||.|..+.++.++.++.++|||||+|.+...|..||..|||..|.|++|.|.|+
T Consensus 70 ~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 149 (165)
T 1rk8_A 70 VEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWC 149 (165)
T ss_dssp C-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEES
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEE
T ss_conf 99988999289988889999999636798779998765899967539999989999999999971999889988899986
Q ss_pred CCCCCCC
Q ss_conf 1788889
Q 030632 86 LPERIKG 92 (174)
Q Consensus 86 ~~~~~~~ 92 (174)
.+...+.
T Consensus 150 ~~~~~~~ 156 (165)
T 1rk8_A 150 FVKGPKR 156 (165)
T ss_dssp EECC---
T ss_pred CCCCCCC
T ss_conf 4789888
No 5
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=1.00 E-value=1 Score=119.03 Aligned_cols=81 Identities=23% Similarity=0.292 Sum_probs=77.4
Q ss_pred CCCEEEECCCCCCCHHHHHHHHCCCCC--CEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEE
Q ss_conf 999799829999882999998314499--846999711799999520899997077989999982399512485979985
Q 030632 7 QKNTLYVGGLAEEVNEAILHAAFIPFG--DIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 7 ~~~~i~V~~Lp~~~~~~~l~~~F~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 84 (174)
..++|||+||++.+++.+|+.+|++|| .|..|.|++++.++.++|||||+|.+.++|.+||..||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEE
T ss_conf 84089985989989999999999987896358999875489995053899997989999999998589867998869987
Q ss_pred ECC
Q ss_conf 317
Q 030632 85 ALP 87 (174)
Q Consensus 85 a~~ 87 (174)
+++
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
T ss_conf 777
No 6
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=118.20 Aligned_cols=84 Identities=19% Similarity=0.368 Sum_probs=77.3
Q ss_pred CCEEEECCCCCCCHHHHHHHHCCCCC-CEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHC-CCCEECCEEEEEEEE
Q ss_conf 99799829999882999998314499-8469997117999995208999970779899999823-995124859799853
Q 030632 8 KNTLYVGGLAEEVNEAILHAAFIPFG-DIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNM-DGAELYGRVLTVNYA 85 (174)
Q Consensus 8 ~~~i~V~~Lp~~~~~~~l~~~F~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ai~~l-~g~~~~g~~l~v~~a 85 (174)
+++|||+|||+.+++.+|+.+|++|| .|..+.+++++.++.++|||||+|.+.++|.+|+..+ |+..+.|++|+|.||
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHCCEEEEEEEEECCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEEECCEEEEEEEC
T ss_conf 99999949999999999998998749875899998549999857528999649999999999627990899999999985
Q ss_pred CCCCCC
Q ss_conf 178888
Q 030632 86 LPERIK 91 (174)
Q Consensus 86 ~~~~~~ 91 (174)
.|++..
T Consensus 81 ~~~~~~ 86 (91)
T 2lxi_A 81 DPKPKI 86 (91)
T ss_dssp CSCCCC
T ss_pred CCCCCC
T ss_conf 899987
No 7
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=1.00 E-value=1 Score=117.40 Aligned_cols=85 Identities=24% Similarity=0.446 Sum_probs=77.1
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEE
Q ss_conf 99999799829999882999998314499846999711799999520899997077989999982399512485979985
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 5 ~~~~~~i~V~~Lp~~~~~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 84 (174)
|...++|||+|||+.+++.+|+.+|++||.|..+.+++++ +.++|||||+|.+.++|.+||..||+..|.|++|+|.+
T Consensus 2 P~~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~--~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~ 79 (115)
T 4f25_A 2 PLGSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDE--NGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 79 (115)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEET--TEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEECCCCCCCCHHHHHHHHHCCCCEEEEEEEECC--CCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEE
T ss_conf 7899899988899988999999998226977788876338--99886389998999999999998399888999979998
Q ss_pred ECCCCCC
Q ss_conf 3178888
Q 030632 85 ALPERIK 91 (174)
Q Consensus 85 a~~~~~~ 91 (174)
+.++..+
T Consensus 80 a~~~~~~ 86 (115)
T 4f25_A 80 FKSRKER 86 (115)
T ss_dssp SSCCCC-
T ss_pred CCCCCCC
T ss_conf 8886445
No 8
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=1.00 E-value=1 Score=117.26 Aligned_cols=87 Identities=32% Similarity=0.458 Sum_probs=81.2
Q ss_pred CCCCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEE
Q ss_conf 89999979982999988299999831449984699971179999952089999707798999998239951248597998
Q 030632 4 LAVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVN 83 (174)
Q Consensus 4 ~~~~~~~i~V~~Lp~~~~~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~ 83 (174)
.+.+.++|||+|||+.+++.+|+.+|++||.|..+.+++++.++..+|||||+|.+.++|.+|+..||+..|.|++|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEE
T ss_conf 99999889996999989999999999705985799998659999523399999798999999999838998899888999
Q ss_pred EECCCCC
Q ss_conf 5317888
Q 030632 84 YALPERI 90 (174)
Q Consensus 84 ~a~~~~~ 90 (174)
|+.++..
T Consensus 122 ~a~~~~p 128 (129)
T 2kxn_B 122 FSITKRP 128 (129)
T ss_dssp CCSSSSC
T ss_pred EECCCCC
T ss_conf 8058899
No 9
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=1.00 E-value=1 Score=117.20 Aligned_cols=90 Identities=28% Similarity=0.418 Sum_probs=82.5
Q ss_pred CCCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEE
Q ss_conf 99999799829999882999998314499846999711799999520899997077989999982399512485979985
Q 030632 5 AVQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNY 84 (174)
Q Consensus 5 ~~~~~~i~V~~Lp~~~~~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~ 84 (174)
..+.++|||+|||+.+++.+|+.+|+.||.|..+.+++++.++.++|||||+|.+.++|.+|+..||+..|.|+.|+|.+
T Consensus 39 ~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 118 (139)
T 1u6f_A 39 PDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVAL 118 (139)
T ss_dssp TTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEE
T ss_conf 88888899969999999999999998649867999877699997456999998989999999998289877882899998
Q ss_pred ECCCCCCCCC
Q ss_conf 3178888999
Q 030632 85 ALPERIKGGE 94 (174)
Q Consensus 85 a~~~~~~~~~ 94 (174)
+++...+.+.
T Consensus 119 a~~~~~~~~~ 128 (139)
T 1u6f_A 119 AASGHQRPGI 128 (139)
T ss_dssp SSCCCCCCCS
T ss_pred CCCCCCCCCC
T ss_conf 7788777888
No 10
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=1.00 E-value=1 Score=117.09 Aligned_cols=88 Identities=38% Similarity=0.492 Sum_probs=81.8
Q ss_pred CCCCEEEECCCCCCCHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCEEEEEECCHHHHHHHHHHCCCCEECCEEEEEEEE
Q ss_conf 99997998299998829999983144998469997117999995208999970779899999823995124859799853
Q 030632 6 VQKNTLYVGGLAEEVNEAILHAAFIPFGDIKDVKTPLDQATQKHRSFGFVTFLEKEDAIQAMDNMDGAELYGRVLTVNYA 85 (174)
Q Consensus 6 ~~~~~i~V~~Lp~~~~~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ai~~l~g~~~~g~~l~v~~a 85 (174)
.+.++|||+|||+.+++.+|+.+|+.||.|..+.++.++.++.++|||||+|.+.+.|..|+..|||..|.|++|+|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEC
T ss_conf 99778999498999989999999984598689998605899961359999989899999999980898789968999987
Q ss_pred CCCCCCCC
Q ss_conf 17888899
Q 030632 86 LPERIKGG 93 (174)
Q Consensus 86 ~~~~~~~~ 93 (174)
++......
T Consensus 148 ~~~~~~~~ 155 (158)
T 2kn4_A 148 RYGRPPDS 155 (158)
T ss_dssp CCSSCCCC
T ss_pred CCCCCCCC
T ss_conf 77899898
Done!