BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030633
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1PI1|A Chain A, Crystal Structure Of A Human Mob1 Protein; Toward
Understanding Mob-Regulated Cell Cycle Pathways
Length = 185
Score = 190 bits (483), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 93/180 (51%), Positives = 113/180 (62%), Gaps = 41/180 (22%)
Query: 32 IDATLGSGNLREAL----------WISST------------------------------- 50
++ATLGSGNLR+A+ WI+
Sbjct: 1 MEATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGP 60
Query: 51 RYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTI 110
RYEY WADG IKKPI+ SAPKY++YLM W++ QLDDE++FP K+G PFP NF V KTI
Sbjct: 61 RYEYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTI 120
Query: 111 FKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSI 170
KRLFRVYAHIYH HF ++ L+EEAHLNT FKHFI F EF LID++EL PLQELI+ +
Sbjct: 121 LKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKL 180
>pdb|1R3B|A Chain A, Solution Structure Of Xenopus Laevis Mob1
Length = 202
Score = 189 bits (480), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 111/178 (62%), Gaps = 41/178 (23%)
Query: 34 ATLGSGNLREAL----------WISST-------------------------------RY 52
ATLGSGNLR+A+ WI+ RY
Sbjct: 20 ATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTESTCSVMSAGPRY 79
Query: 53 EYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFK 112
EY WADG IKKPI+ SAPKY++YLM W++ QLDDE++FP K+G PFP NF V KTI K
Sbjct: 80 EYHWADGTNIKKPIKCSAPKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILK 139
Query: 113 RLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSI 170
RLFRVYAHIYH HF ++ L+EEAHLNT FKHFI F EF LID++EL PLQELI+ +
Sbjct: 140 RLFRVYAHIYHQHFDAVMQLQEEAHLNTSFKHFIFFVQEFNLIDRRELAPLQELIEKL 197
>pdb|2HJN|A Chain A, Structural And Functional Analysis Of Saccharomyces
Cerevisiae Mob1
Length = 236
Score = 120 bits (301), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 60/125 (48%), Positives = 80/125 (64%), Gaps = 2/125 (1%)
Query: 47 ISSTRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNF-KE 105
I++ YEY WA + + P+ VSAPKYVE L W + Q DDES+FP K+ FP F +
Sbjct: 110 IATNEYEYLWAFQ-KGQPPVSVSAPKYVECLXRWCQDQFDDESLFPSKVTGTFPEGFIQR 168
Query: 106 VVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQE 165
V++ I +RLFRVYAHIY HF +I+ L + LNT F+HF LF EF L+ + GPL E
Sbjct: 169 VIQPILRRLFRVYAHIYCHHFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLE 228
Query: 166 LIDSI 170
L+ +
Sbjct: 229 LVXEL 233
>pdb|3LMH|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
pdb|3LMH|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Adp
Length = 307
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 56 WADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLF 115
W + KKP PK +E+LM W+ +D P G P + + ++ FK+
Sbjct: 139 WGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPILCSIEPLLVGEFKKNN 190
Query: 116 RVYAHI 121
Y +
Sbjct: 191 SNYGAV 196
>pdb|3LMI|A Chain A, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|B Chain B, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|C Chain C, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
pdb|3LMI|D Chain D, Crystal Structure Of The Inactive Alpha-Kinase Domain Of
Myosin Heavy Chain Kinase A (D766a) Complex With Atp
Length = 307
Score = 26.9 bits (58), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 56 WADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLF 115
W + KKP PK +E+LM W+ +D P G P + + ++ FK+
Sbjct: 139 WGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPILCSIEPLLVGEFKKNN 190
Query: 116 RVYAHI 121
Y +
Sbjct: 191 SNYGAV 196
>pdb|3LKM|A Chain A, 1.6 Angstrom Crystal Structure Of The Alpha-Kinase Domain
Of Myosin Heavy Chain Kinase A Complex With Amp
pdb|3LLA|A Chain A, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
pdb|3LLA|B Chain B, Crystal Structure Of The Alpha-Kinase Domain Of Myosin
Heavy Chain Kinase A Complex With Amppcp
Length = 307
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 56 WADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLF 115
W + KKP PK +E+LM W+ +D P G P + + ++ FK+
Sbjct: 139 WGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPILCSIEPLLVGEFKKNN 190
Query: 116 RVYAHI 121
Y +
Sbjct: 191 SNYGAV 196
>pdb|3KD8|A Chain A, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
pdb|3KD8|B Chain B, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
Length = 399
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 37 GSGNLREALWISSTRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLG 96
G+ L +A+ + Y +R GV+ + + VS P + + D S E + P+K+
Sbjct: 121 GNEELADAISLDXGEYSFRVKSGVEHRAALVVSGPDLSDXIGD---SDPHREGLPPEKIR 177
Query: 97 APFPSNFK--EVVKTIFKRLFRVYA 119
PS + EV + R+ +
Sbjct: 178 PTDPSGDRTAEVXNAYLEEARRILS 202
>pdb|3PDT|A Chain A, Crystal Structure Of The C-Terminal Truncated Alpha-Kinase
Domain Of Myosin Heavy Chain Kinase
Length = 275
Score = 26.9 bits (58), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 8/66 (12%)
Query: 56 WADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLF 115
W + KKP PK +E+LM W+ +D P G P + + ++ FK+
Sbjct: 139 WGNKFNQKKP-----PKKIEFLMSWVVELIDRS---PSSNGQPILCSIEPLLVGEFKKNN 190
Query: 116 RVYAHI 121
Y +
Sbjct: 191 SNYGAV 196
>pdb|3IDD|A Chain A, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
pdb|3IDD|B Chain B, Cofactor-Independent Phosphoglycerate Mutase From
Thermoplasma Acidophilum Dsm 1728
Length = 407
Score = 26.9 bits (58), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 37/85 (43%), Gaps = 5/85 (5%)
Query: 37 GSGNLREALWISSTRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLG 96
G+ L +A+ + Y +R GV+ + + VS P + + D S E + P+K+
Sbjct: 122 GNEELADAISLDXGEYSFRVKSGVEHRAALVVSGPDLSDXIGD---SDPHREGLPPEKIR 178
Query: 97 APFPSNFK--EVVKTIFKRLFRVYA 119
PS + EV + R+ +
Sbjct: 179 PTDPSGDRTAEVXNAYLEEARRILS 203
>pdb|3ZQ5|A Chain A, Structure Of The Y263f Mutant Of The Cyanobacterial
Phytochrome Cph1
Length = 520
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 67 EVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPS--NFKEVVKTIF 111
E K V+YL+ W+E++ + F L +P NFK V +
Sbjct: 381 ETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLL 427
>pdb|2VEA|A Chain A, The Complete Sensory Module Of The Cyanobacterial
Phytochrome Cph1 In The Pr-State
Length = 520
Score = 26.6 bits (57), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Query: 67 EVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPS--NFKEVVKTIF 111
E K V+YL+ W+E++ + F L +P NFK V +
Sbjct: 381 ETPDEKAVQYLLQWLENREVQDVFFTSSLSQIYPDAVNFKSVASGLL 427
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.139 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,338,927
Number of Sequences: 62578
Number of extensions: 214301
Number of successful extensions: 395
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 389
Number of HSP's gapped (non-prelim): 17
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)