Query 030633
Match_columns 174
No_of_seqs 117 out of 390
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 16:42:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030633.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030633hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0440 Cell cycle-associated 100.0 3.6E-64 7.8E-69 420.1 15.3 164 9-174 37-242 (243)
2 KOG1903 Cell cycle-associated 100.0 1.5E-62 3.2E-67 396.1 14.9 165 8-172 11-217 (217)
3 PF03637 Mob1_phocein: Mob1/ph 100.0 1.2E-56 2.6E-61 363.9 14.0 134 29-164 1-175 (175)
4 KOG1852 Cell cycle-associated 99.7 9.1E-17 2E-21 130.3 4.9 106 50-163 104-210 (223)
5 PF10671 TcpQ: Toxin co-regula 69.9 7.7 0.00017 27.5 3.8 47 38-113 8-57 (84)
6 cd00397 DNA_BRE_C DNA breaking 43.8 87 0.0019 22.6 5.8 32 85-116 84-115 (164)
7 PHA03074 late transcription fa 39.0 40 0.00086 28.8 3.5 82 68-153 59-146 (225)
8 KOG3261 Uncharacterized conser 28.9 45 0.00098 27.8 2.2 19 110-128 121-140 (202)
9 PF06798 PrkA: PrkA serine pro 24.3 2.8E+02 0.0061 23.9 6.4 84 75-172 150-239 (254)
10 PRK09870 tyrosine recombinase; 23.7 1.3E+02 0.0028 23.8 4.0 49 64-116 77-130 (200)
11 PF05029 TIMELESS_C: Timeless 23.0 1.2E+02 0.0025 29.2 4.2 47 66-119 9-55 (566)
12 cd00800 INT_Lambda_C Lambda in 22.0 1.3E+02 0.0029 22.4 3.6 35 64-98 60-96 (162)
13 cd01198 INT_ASSRA_C Archaeal s 22.0 2.1E+02 0.0045 21.8 4.8 47 68-114 66-115 (186)
14 PRK00811 spermidine synthase; 21.4 1.7E+02 0.0036 25.1 4.5 75 46-125 143-219 (283)
15 COG5113 UFD2 Ubiquitin fusion 21.2 89 0.0019 31.3 3.0 107 63-171 725-835 (929)
16 cd01197 INT_FimBE_C FimB and F 20.2 1.8E+02 0.004 22.0 4.1 47 64-114 69-120 (180)
No 1
>KOG0440 consensus Cell cycle-associated protein Mob1-1 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=3.6e-64 Score=420.09 Aligned_cols=164 Identities=59% Similarity=1.017 Sum_probs=158.2
Q ss_pred CCCCCCCCCCCCCCCcccchhHHHHhhhcC-Ccccchh----------hcc-----------------------------
Q 030633 9 NQRTFRPKKSAPSGSKGAQLRKHIDATLGS-GNLREAL----------WIS----------------------------- 48 (174)
Q Consensus 9 ~~~t~~p~~~~~~g~~~~~l~~~~~~tl~~-g~l~~~V----------WlA----------------------------- 48 (174)
+.+++++++..++++.++++.+.++++||+ |||++|| |||
T Consensus 37 ~~~~~~~k~~~~~~s~~~~~~~~~e~~l~s~g~l~~aV~LP~G~D~nEWlA~nt~~fF~qvN~lYGtitEfCT~~sCp~M 116 (243)
T KOG0440|consen 37 AAKPFRKKEASASLSVRPQAKYLAEATLGSSGNLREAVKLPEGEDLNEWLAVNTLDFFNQVNLLYGTITEFCTQQSCPHM 116 (243)
T ss_pred ccccccccccCcccCccHHHHHHHHHhhcccccHHHHhcCCCCCchhhHHHHhHHHHHHHHHHHHHHHHHHcCcccCccc
Confidence 467788999999999999999999999999 9999999 999
Q ss_pred --CCCCeeEecCCCCCCCCcccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhH
Q 030633 49 --STRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHF 126 (174)
Q Consensus 49 --g~~~~Y~W~D~~~~kkp~~~sAp~YI~~lm~wi~~~l~de~iFPt~~g~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~ 126 (174)
||++||+|+|+. +||++||||||||++|+|||++++||+||||++|.+||+||.+.||+|+||||||||||||+||
T Consensus 117 sag~~yeY~W~D~~--~kp~~~sApqYId~lmtw~q~~~dde~iFPtK~g~~FP~nF~~~vk~Ilr~lFrvyAHiY~~Hf 194 (243)
T KOG0440|consen 117 SAGPNYEYLWADEK--GKPVRVSAPQYIDYLMTWCQNQLDDENIFPTKYGNPFPGNFESVVKKILRRLFRVYAHIYHSHF 194 (243)
T ss_pred cCCCcceeeeeccc--CCccccCchHHHHHHHHHHHHhccccccCccccCCCCCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 789999999965 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHhCCCCccccCchHHHHHHhhcCC
Q 030633 127 QKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIVPY 174 (174)
Q Consensus 127 ~~~~~l~~e~hlNt~FkHF~~F~~eF~Li~~kel~PL~~li~~l~~~~ 174 (174)
+.|.+|++++||||||+||++|++||+|||+||++||++||+.|..++
T Consensus 195 ~~i~~L~l~ahlNt~F~Hf~~f~~eF~LiD~kE~aPl~~Li~~l~~~d 242 (243)
T KOG0440|consen 195 DEIVALQLEAHLNTSFKHFILFAREFQLLDKKETAPLLELIESLLSQD 242 (243)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHhccCHHhhhhHHHHHHHHhccC
Confidence 999999999999999999999999999999999999999999998764
No 2
>KOG1903 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.5e-62 Score=396.06 Aligned_cols=165 Identities=50% Similarity=0.994 Sum_probs=161.8
Q ss_pred CCCCCCCCCCCCCCCCcccchhHHHHhhhcCC-cccchh----------hcc----------------------------
Q 030633 8 RNQRTFRPKKSAPSGSKGAQLRKHIDATLGSG-NLREAL----------WIS---------------------------- 48 (174)
Q Consensus 8 ~~~~t~~p~~~~~~g~~~~~l~~~~~~tl~~g-~l~~~V----------WlA---------------------------- 48 (174)
.+.+||||||++++||.||+||+.++|+|.|| ||+.+| |+|
T Consensus 11 nK~KTFRPkkkF~~GT~Rf~LhK~AqAsL~sG~dLr~aV~LPpgEn~nDW~AVHvVDFFNRiNLiYGTise~Cte~sCP~ 90 (217)
T KOG1903|consen 11 NKDKTFRPKKKFEPGTQRFELHKKAQASLNSGLDLRSAVRLPPGENLNDWLAVHVVDFFNRINLIYGTISEFCTETSCPV 90 (217)
T ss_pred ccCCccCCCCCCCCCceeeehHHHHHHHHhcCcchHHhccCCCCCCccceeeeehhhhhhhhHhhhhhHhhhccccCCCc
Confidence 47899999999999999999999999999999 999999 999
Q ss_pred ---CCCCeeEecCCCCCCCCcccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhh
Q 030633 49 ---STRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSH 125 (174)
Q Consensus 49 ---g~~~~Y~W~D~~~~kkp~~~sAp~YI~~lm~wi~~~l~de~iFPt~~g~~FP~~F~~~v~~I~rrLfRVyaHiY~~H 125 (174)
||+|||+|+|+..|+||+.+|||+||+.|||||+.+||||.+|||..|+|||+||.++|++|+-||||||.|+|.||
T Consensus 91 MsGG~rYEY~WqD~~~ykkPt~L~Ap~Ym~lLMDWIE~~INnE~vFPt~~~vpFPKnF~qi~~KILtRLFRVFVHVYIHH 170 (217)
T KOG1903|consen 91 MSGGPRYEYRWQDERKYKKPTALSAPRYMALLMDWIEVQINNEEVFPTSVGVPFPKNFLQICKKILTRLFRVFVHVYIHH 170 (217)
T ss_pred ccCCCcceeEecccccccCCccCCcHHHHHHHHHHHHHhccccccccccCCCCCcHhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhHHHHHHHHHHHHHHHhCCCCccccCchHHHHHHhhc
Q 030633 126 FQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIV 172 (174)
Q Consensus 126 ~~~~~~l~~e~hlNt~FkHF~~F~~eF~Li~~kel~PL~~li~~l~~ 172 (174)
||.|.++|+|+|.|||||||.+|++||+|||.||||||+++.+.+|.
T Consensus 171 FDri~~mGaE~HvNtcYKHFYyFv~Ef~li~~kELEpLkeMT~R~c~ 217 (217)
T KOG1903|consen 171 FDRILSMGAEAHVNTCYKHFYYFVTEFGLIDTKELEPLKEMTERICH 217 (217)
T ss_pred hHHHHHhccHHHHHHHHHHHHHHhhhccccchhhcchHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999998873
No 3
>PF03637 Mob1_phocein: Mob1/phocein family; InterPro: IPR005301 Mob1 is an essential Saccharomyces cerevisiae (Baker's yeast) protein, identified from a two-hybrid screen, that binds Mps1p, a protein kinase essential for spindle pole body duplication and mitotic checkpoint regulation. Mob1 contains no known structural motifs; however MOB1 is a member of a conserved gene family and shares sequence similarity with a nonessential yeast gene, MOB2. Mob1 is a phosphoprotein in vivo and a substrate for the Mps1p kinase in vitro. Conditional alleles of MOB1 cause a late nuclear division arrest at restrictive temperature []. This family also includes phocein Q9QYW3 from SWISSPROT, a rat protein that by yeast two hybrid interacts with striatin [].; PDB: 2HJN_A 1PI1_A 1R3B_A.
Probab=100.00 E-value=1.2e-56 Score=363.91 Aligned_cols=134 Identities=63% Similarity=1.163 Sum_probs=121.3
Q ss_pred hHHHHhhhcCCcccchh----------hcc-------------------------------CCCCeeEecCCCCCCCCcc
Q 030633 29 RKHIDATLGSGNLREAL----------WIS-------------------------------STRYEYRWADGVQIKKPIE 67 (174)
Q Consensus 29 ~~~~~~tl~~g~l~~~V----------WlA-------------------------------g~~~~Y~W~D~~~~kkp~~ 67 (174)
|++++++|++|||+++| ||| |++++|+|+|+. ++|++
T Consensus 1 ~~~~~~~l~~~~l~~~V~lP~g~d~~eWla~~~~~f~~~in~l~~~v~e~Ct~~tCP~Msag~~~~Ylw~d~~--~kp~~ 78 (175)
T PF03637_consen 1 QQYVQATLGKGNLRTLVKLPKGVDENEWLAVHTVDFFNEINLLYGVVSEFCTPETCPTMSAGPNWEYLWADHK--KKPVK 78 (175)
T ss_dssp HHHHHHHCCGG-HHHHCS-STT--HHHHHHHHHHHHHHHHHHHHHHHGGGS-TTTTSSEESSTTCEE-BSSST--TS-BS
T ss_pred CHHHHHHHhcCCHHHHhcCcCCCChhhHHHHhhHHHHHHHHHHHhhccCcCCcccCcCccCCccceeeeeccC--CCCcc
Confidence 68999999999999999 999 679999999965 48999
Q ss_pred cChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHHHHhhhhhHHHHHHHHHHH
Q 030633 68 VSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFIL 147 (174)
Q Consensus 68 ~sAp~YI~~lm~wi~~~l~de~iFPt~~g~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~FkHF~~ 147 (174)
||||+||+++|+||+++|+||++|||+.|++||++|.++|++|||||||||||||++||+.|.++|+++||||||+||++
T Consensus 79 ~~A~~Yi~~~l~w~~~~l~d~~iFPt~~~~~fp~~f~~~v~~I~rrLfRvyaHiY~~H~~~~~~l~~~~hln~~F~hF~~ 158 (175)
T PF03637_consen 79 CSAPQYIDHLLDWIQSQLNDEKIFPTKPGVPFPKNFKKTVKKIFRRLFRVYAHIYHHHFEQFVELELEAHLNTCFKHFVL 158 (175)
T ss_dssp --HHHHHHHHHHHHHHHHTSTTTSSSSTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTT-HHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHHHccCcccCCCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCccccCchH
Q 030633 148 FTCEFGLIDKKELGPLQ 164 (174)
Q Consensus 148 F~~eF~Li~~kel~PL~ 164 (174)
|++||+||++||++||+
T Consensus 159 f~~eF~Li~~~el~pL~ 175 (175)
T PF03637_consen 159 FAREFDLIDEKELEPLQ 175 (175)
T ss_dssp HHHHHT-S-GGGGGGGH
T ss_pred HHHHhCCCCHHHhcccC
Confidence 99999999999999996
No 4
>KOG1852 consensus Cell cycle-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.65 E-value=9.1e-17 Score=130.30 Aligned_cols=106 Identities=22% Similarity=0.446 Sum_probs=93.2
Q ss_pred CCCeeEecCCCCCCCCcccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 030633 50 TRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKI 129 (174)
Q Consensus 50 ~~~~Y~W~D~~~~kkp~~~sAp~YI~~lm~wi~~~l~de~iFPt~~g~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~ 129 (174)
..|-++++.. |.|.+|||++|..+.+|-....|++.+.|||+.+. .......+..++||+||||+|.|+||...|
T Consensus 104 eqwiflcaah---ktpkecpaidytrhtldgaacllnsnkyfpsrvsi--kessv~klgsvcrrvyrifsha~fhhr~if 178 (223)
T KOG1852|consen 104 EQWIFLCAAH---KTPKECPAIDYTRHTLDGAACLLNSNKYFPSRVSI--KESSVAKLGSVCRRVYRIFSHAYFHHRKIF 178 (223)
T ss_pred hHHHhhhhhc---CCcccCCcccchhhccccccccccCCccCCcccch--hhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445666654 58999999999999999999999999999999874 688899999999999999999999999999
Q ss_pred HHhhhhhHHHHHHHHHHHHHHHhCCCCcccc-Cch
Q 030633 130 VSLKEEAHLNTCFKHFILFTCEFGLIDKKEL-GPL 163 (174)
Q Consensus 130 ~~l~~e~hlNt~FkHF~~F~~eF~Li~~kel-~PL 163 (174)
.+.+.|.||+ ++|..|+..|+||+...| .|+
T Consensus 179 defe~etylc---~rft~~v~kynlms~e~livpi 210 (223)
T KOG1852|consen 179 DEFENETYLC---HRFTKFVSKYNLMSKENLIVPI 210 (223)
T ss_pred HHhhhhhHHH---HHHHHHHHhhhhccccceeeec
Confidence 9999999999 566777889999998875 454
No 5
>PF10671 TcpQ: Toxin co-regulated pilus biosynthesis protein Q; InterPro: IPR018927 The toxin-coregulated pilus (TCP) of Vibrio cholerae and the soluble TcpF protein that is secreted via the TCP biogenesis apparatus are essential for intestinal colonisation in the disease of cholera. TCP fibres are homopolymers of TcpA pilin, encoded by the first gene in the tcp biogenesis operon. TcpQ is part of an outer membrane complex of the TCP biogenesis apparatus, comprised of TcpC and TcpQ. TcpQ is required for proper localisation of TcpC to the outer membrane [, ]. This entry represents a C-terminal domain found in TcpQ and other pilus biosynthesis proteins.; PDB: 3OV5_A 2L4W_A.
Probab=69.89 E-value=7.7 Score=27.47 Aligned_cols=47 Identities=32% Similarity=0.702 Sum_probs=30.1
Q ss_pred CC-cccchh--hccCCCCeeEecCCCCCCCCcccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHHHH
Q 030633 38 SG-NLREAL--WISSTRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKR 113 (174)
Q Consensus 38 ~g-~l~~~V--WlAg~~~~Y~W~D~~~~kkp~~~sAp~YI~~lm~wi~~~l~de~iFPt~~g~~FP~~F~~~v~~I~rr 113 (174)
+| .|++.+ |.+-.+++..|.-+.. +|.+....|..+|...++.+++.
T Consensus 8 ~g~tL~~~L~~Wa~~aGw~l~W~~~~d-----------------------------y~i~~~~~~~gsf~~Av~~l~~~ 57 (84)
T PF10671_consen 8 KGETLREALERWAKQAGWTLVWDAPKD-----------------------------YPIDAPATFSGSFEDAVKQLFSA 57 (84)
T ss_dssp TT-BHHHHHHHHHHCTT-EEEE-SSS-------------------------------B--CCCCC-E-HHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHCCCEEEecCCCC-----------------------------EEecCceEecCcHHHHHHHHHHH
Confidence 45 788888 9998889999974432 46666677888888888777765
No 6
>cd00397 DNA_BRE_C DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine recombinases that share the same fold in their catalytic domain containing six conserved active site residues. The best-studied members of this diverse superfamily include human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl gener
Probab=43.79 E-value=87 Score=22.62 Aligned_cols=32 Identities=38% Similarity=0.526 Sum_probs=21.3
Q ss_pred cCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 030633 85 LDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 116 (174)
Q Consensus 85 l~de~iFPt~~g~~FP~~F~~~v~~I~rrLfR 116 (174)
.+++.+||+..+.+........+..+++++-.
T Consensus 84 ~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (164)
T cd00397 84 GDEEYLFPSRRGGPAATLSRRNVKRIFKAAGR 115 (164)
T ss_pred CCCCceeecCCCCCccCCcHHHHHHHHHHHHH
Confidence 46788999988766554555566666666543
No 7
>PHA03074 late transcription factor VLTF-3; Provisional
Probab=39.00 E-value=40 Score=28.80 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=56.8
Q ss_pred cChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHH----HHHHHHHHHHHHHHhhhhHHHHHHhhh--hhHHHHH
Q 030633 68 VSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVV----KTIFKRLFRVYAHIYHSHFQKIVSLKE--EAHLNTC 141 (174)
Q Consensus 68 ~sAp~YI~~lm~wi~~~l~de~iFPt~~g~~FP~~F~~~v----~~I~rrLfRVyaHiY~~H~~~~~~l~~--e~hlNt~ 141 (174)
++-.+=.+.+.+-...++++..+=+...++.|-.+|.+.= ++=||..|-+.-|+=-.-.. |.. -.-++-.
T Consensus 59 lls~qcs~~ii~ell~lm~kn~i~~~didan~vs~fLK~~~~inkKdYklvfeiiN~~~~e~ln----LttekInei~eI 134 (225)
T PHA03074 59 LLSNQCSGEIISELLELMNKNQISTKDVDANFVSSFLKAKERINKKDYKLVFEIINQVKDEKLN----LTTEKINEVVEI 134 (225)
T ss_pred HHHhHhhHHHHHHHHHHHHHccCChhhhhHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhhccc----ccHHHHHHHHHH
Confidence 4445666677777788888888888888888888887765 45577777766655332222 222 2345678
Q ss_pred HHHHHHHHHHhC
Q 030633 142 FKHFILFTCEFG 153 (174)
Q Consensus 142 FkHF~~F~~eF~ 153 (174)
|+||+.||+|..
T Consensus 135 Fk~lvfF~qent 146 (225)
T PHA03074 135 FKHLVFFCQENT 146 (225)
T ss_pred HHHHHHHHhccC
Confidence 999999999854
No 8
>KOG3261 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.89 E-value=45 Score=27.79 Aligned_cols=19 Identities=47% Similarity=0.856 Sum_probs=14.9
Q ss_pred HHHHHHHHH-HHHhhhhHHH
Q 030633 110 IFKRLFRVY-AHIYHSHFQK 128 (174)
Q Consensus 110 I~rrLfRVy-aHiY~~H~~~ 128 (174)
=|||-|||. |-.|..||..
T Consensus 121 ~frRkFRVI~a~~y~k~faS 140 (202)
T KOG3261|consen 121 EFRRKFRVIHAPLYFKHFAS 140 (202)
T ss_pred HHHhheeeeccHHHHHHhhc
Confidence 589999975 7788888853
No 9
>PF06798 PrkA: PrkA serine protein kinase C-terminal domain; InterPro: IPR010650 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry is found at the C terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=24.26 E-value=2.8e+02 Score=23.85 Aligned_cols=84 Identities=20% Similarity=0.303 Sum_probs=55.0
Q ss_pred HHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHH-----hhhhHHHHHHhhhhhHHHHHHHHHHHHH
Q 030633 75 EYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHI-----YHSHFQKIVSLKEEAHLNTCFKHFILFT 149 (174)
Q Consensus 75 ~~lm~wi~~~l~de~iFPt~~g~~FP~~F~~~v~~I~rrLfRVyaHi-----Y~~H~~~~~~l~~e~hlNt~FkHF~~F~ 149 (174)
+..|.-|+.+|. ++... |++|...|.+..-++ +|- | .-++.+.+ -+|.+|=.-.++++-+.
T Consensus 150 E~~mrsIEe~ig-----i~~~~---~~~FR~ei~~~~~~~----~~~g~~~~~-~~~e~Lr~-~iEkkL~~d~~~~~~~~ 215 (254)
T PF06798_consen 150 ERFMRSIEERIG-----ISEEA---KKDFRREIIKYISAL----AREGKKFDY-TSYERLRE-AIEKKLFSDVKDLIKII 215 (254)
T ss_pred HHHHHHHHHhcC-----CCccc---HHHHHHHHHHHHHHH----HcCCCCCCh-hhhHHHHH-HHHHHHHHHHHHHHHhc
Confidence 677777777762 22222 688987766555222 222 3 33344443 56677766778888888
Q ss_pred H-HhCCCCccccCchHHHHHHhhc
Q 030633 150 C-EFGLIDKKELGPLQELIDSIIV 172 (174)
Q Consensus 150 ~-eF~Li~~kel~PL~~li~~l~~ 172 (174)
. .++-.|++..+-...+|+.|++
T Consensus 216 t~~~k~~d~e~~~~~~~~i~rL~~ 239 (254)
T PF06798_consen 216 TESSKTPDKEQQRKIDEVIERLIK 239 (254)
T ss_pred chhccCCCHHHHHHHHHHHHHHHH
Confidence 7 7887888888889999999854
No 10
>PRK09870 tyrosine recombinase; Provisional
Probab=23.67 E-value=1.3e+02 Score=23.78 Aligned_cols=49 Identities=16% Similarity=0.291 Sum_probs=30.6
Q ss_pred CCcccChHHHHHHHHHHHHHh-----cCCCCCCCCCCCCCCCcchHHHHHHHHHHHHH
Q 030633 64 KPIEVSAPKYVEYLMDWIESQ-----LDDESIFPQKLGAPFPSNFKEVVKTIFKRLFR 116 (174)
Q Consensus 64 kp~~~sAp~YI~~lm~wi~~~-----l~de~iFPt~~g~~FP~~F~~~v~~I~rrLfR 116 (174)
..+.++ ++-++.+..|+... .+++-+||+..|.|... ..+.++++++..
T Consensus 77 ~~vpl~-~~~~~~l~~~~~~~~~~~~~~~~~lf~~~~g~~~s~---~~~~~~~k~~~~ 130 (200)
T PRK09870 77 TTHPLL-NKEIQALKNWLSIRTSYPHAESEWVFLSRKGNPLSR---QQFYHIISTSGG 130 (200)
T ss_pred eEEECC-HHHHHHHHHHHHhcccCCCCCCCceeeCCCCCcCCH---HHHHHHHHHHHH
Confidence 345554 45577788887643 35678999988876543 345555655543
No 11
>PF05029 TIMELESS_C: Timeless protein C terminal region; InterPro: IPR007725 The timeless (tim) gene is essential for circadian function in Drosophila. Putative homologues of Drosophila tim have been identified in both mice and humans (mTim and hTIM, respectively). Mammalian TIM is not the true orthologue of Drosophila TIM, but is the likely orthologue of a fly gene, timeout (also called tim-2) []. mTim has been shown to be essential for embryonic development, but does not have substantiated circadian function []. Some family members contain a SANT domain in this region.
Probab=23.02 E-value=1.2e+02 Score=29.23 Aligned_cols=47 Identities=19% Similarity=0.340 Sum_probs=41.3
Q ss_pred cccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHH
Q 030633 66 IEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYA 119 (174)
Q Consensus 66 ~~~sAp~YI~~lm~wi~~~l~de~iFPt~~g~~FP~~F~~~v~~I~rrLfRVya 119 (174)
.+|++.=|=-.++.=.+++|+|+...|+ +.+...++.|+|++|....
T Consensus 9 ~~~~~mLfqlsl~~lF~~il~~~~~~~~-------kEl~~f~~~ilrkffk~~~ 55 (566)
T PF05029_consen 9 LKMSVMLFQLSLFRLFQRILKDPKSLDS-------KELEEFVKYILRKFFKKAE 55 (566)
T ss_pred CCCceeeHHHHHHHHHHHHHhCcccCCH-------HHHHHHHHHHHHHHHHHHh
Confidence 5788888888899999999999987765 8999999999999998764
No 12
>cd00800 INT_Lambda_C Lambda integrase, C-terminal catalytic domain. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.
Probab=22.03 E-value=1.3e+02 Score=22.41 Aligned_cols=35 Identities=3% Similarity=0.100 Sum_probs=20.1
Q ss_pred CCcccChHHHHHHHHHHHHHhc--CCCCCCCCCCCCC
Q 030633 64 KPIEVSAPKYVEYLMDWIESQL--DDESIFPQKLGAP 98 (174)
Q Consensus 64 kp~~~sAp~YI~~lm~wi~~~l--~de~iFPt~~g~~ 98 (174)
++..+|-++.+..++......- +++-+||+..|.+
T Consensus 60 ~~r~vpl~~~~~~~l~~~~~~~~~~~~~vf~~~~~~~ 96 (162)
T cd00800 60 AKLAIPLSPSLREVIERCRDLSRVSSPYLVHTRPGGK 96 (162)
T ss_pred CeeEEECCHHHHHHHHHHHhhcccCCceEEEcCCCCC
Confidence 4455555555544444433332 6788999987653
No 13
>cd01198 INT_ASSRA_C Archaeal site-specific recombinase A (ASSRA), DNA breaking-rejoining enzymes, integrase/recombinases, C-terminal catalytic domain. Members of this CD are archael in origin. No biochemical characterization is available for the proteins of this subgroup at this point.
Probab=21.96 E-value=2.1e+02 Score=21.83 Aligned_cols=47 Identities=11% Similarity=-0.035 Sum_probs=25.5
Q ss_pred cChHHHHHHHHHHHHHhc--CCCCCCCCCCCCCCCc-chHHHHHHHHHHH
Q 030633 68 VSAPKYVEYLMDWIESQL--DDESIFPQKLGAPFPS-NFKEVVKTIFKRL 114 (174)
Q Consensus 68 ~sAp~YI~~lm~wi~~~l--~de~iFPt~~g~~FP~-~F~~~v~~I~rrL 114 (174)
++.++-...+..|+...- +++-+||+..+.+++. .+...++++++++
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~lF~~~~~~~~~~~~~~~~~~~~~~~~ 115 (186)
T cd01198 66 FPDLETELFRWLAIRPRTTSPADALFIGTQDGWGCRRLVYEMVTGMARRH 115 (186)
T ss_pred cchHHHHHHHHHHhccccCCCCCceEEecCCCcccchhHHHHHHHHHHHh
Confidence 343433333344543332 5678999987765533 3455566666664
No 14
>PRK00811 spermidine synthase; Provisional
Probab=21.41 E-value=1.7e+02 Score=25.10 Aligned_cols=75 Identities=15% Similarity=0.383 Sum_probs=55.2
Q ss_pred hcc--CCCCeeEecCCCCCCCCcccChHHHHHHHHHHHHHhcCCCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh
Q 030633 46 WIS--STRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYH 123 (174)
Q Consensus 46 WlA--g~~~~Y~W~D~~~~kkp~~~sAp~YI~~lm~wi~~~l~de~iFPt~~g~~FP~~F~~~v~~I~rrLfRVyaHiY~ 123 (174)
|+. ...|...+.|.. .|...+..-|....+.-+.+.|++..+|=...+.++-. ...++.|.+.|=.+|.|++.
T Consensus 143 ~l~~~~~~yDvIi~D~~---dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~~~~~~~~--~~~~~~i~~tl~~~F~~v~~ 217 (283)
T PRK00811 143 FVAETENSFDVIIVDST---DPVGPAEGLFTKEFYENCKRALKEDGIFVAQSGSPFYQ--ADEIKDMHRKLKEVFPIVRP 217 (283)
T ss_pred HHhhCCCcccEEEECCC---CCCCchhhhhHHHHHHHHHHhcCCCcEEEEeCCCcccC--HHHHHHHHHHHHHHCCCEEE
Confidence 665 446788888753 35544455677888889999999999998877765432 56788889999999988865
Q ss_pred hh
Q 030633 124 SH 125 (174)
Q Consensus 124 ~H 125 (174)
-+
T Consensus 218 ~~ 219 (283)
T PRK00811 218 YQ 219 (283)
T ss_pred EE
Confidence 33
No 15
>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]
Probab=21.22 E-value=89 Score=31.26 Aligned_cols=107 Identities=17% Similarity=0.244 Sum_probs=70.8
Q ss_pred CCCcccChHHHHHHHHHHHHHhcC---CCCCCCCCCCCCCCcchHHHHHHHHHHHHHHHHHHhh-hhHHHHHHhhhhhHH
Q 030633 63 KKPIEVSAPKYVEYLMDWIESQLD---DESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYH-SHFQKIVSLKEEAHL 138 (174)
Q Consensus 63 kkp~~~sAp~YI~~lm~wi~~~l~---de~iFPt~~g~~FP~~F~~~v~~I~rrLfRVyaHiY~-~H~~~~~~l~~e~hl 138 (174)
..|.-..+++-|+.+..-..-.|. -|+- ++.-+.=|..+--..|+++|||+-||--+-- +-|-.-++-+....=
T Consensus 725 ~iP~aF~~~EiV~rla~mLNyNL~~l~GPKC--~~LkVkdP~~Y~FnaK~LL~~~~~VYinl~~es~FveaVA~D~rsf~ 802 (929)
T COG5113 725 EIPDAFLVDEIVSRLARMLNYNLKILTGPKC--TDLKVKDPEQYGFNAKNLLRRMVMVYINLRSESKFVEAVASDKRSFD 802 (929)
T ss_pred ccchhhhhHHHHHHHHHHHhCcchhccCCCc--cceeecChhhcCCCHHHHHHHHHHHhhhhcchHHHHHHHHccccccc
Confidence 367888888888887766543322 2221 1111223555555678999999999987765 344333333333333
Q ss_pred HHHHHHHHHHHHHhCCCCccccCchHHHHHHhh
Q 030633 139 NTCFKHFILFTCEFGLIDKKELGPLQELIDSII 171 (174)
Q Consensus 139 Nt~FkHF~~F~~eF~Li~~kel~PL~~li~~l~ 171 (174)
--.|.+-+..|..-.|+++.++|-|.++|+.+.
T Consensus 803 ~~~F~rA~~I~~~k~L~s~~~IE~l~~f~nr~E 835 (929)
T COG5113 803 IDFFRRALRICENKYLISESQIEELRSFINRLE 835 (929)
T ss_pred HHHHHHHHHHHhccccCCHHHHHHHHHHHHHHH
Confidence 346788888888888999999999999998764
No 16
>cd01197 INT_FimBE_C FimB and FimE and related proteins, DNA breaking-rejoining enzymes, integrase/recombinases, catalytic domain. This CD includes those proteins similar to E.coli FimE and FimB regulatory proteins and Proteus mirabilis MrpI.
Probab=20.17 E-value=1.8e+02 Score=21.98 Aligned_cols=47 Identities=26% Similarity=0.497 Sum_probs=25.4
Q ss_pred CCcccChHHHHHHHHHHHHH-----hcCCCCCCCCCCCCCCCcchHHHHHHHHHHH
Q 030633 64 KPIEVSAPKYVEYLMDWIES-----QLDDESIFPQKLGAPFPSNFKEVVKTIFKRL 114 (174)
Q Consensus 64 kp~~~sAp~YI~~lm~wi~~-----~l~de~iFPt~~g~~FP~~F~~~v~~I~rrL 114 (174)
..+.++... ++.+-.|.+. .-+++-+||+..|.++.. ..+..+++++
T Consensus 69 ~~~pi~~~~-~~~l~~~~~~~~~~~~~~~~~lf~~~~g~~~~~---~~~~~~~~~~ 120 (180)
T cd01197 69 TTHPLRDDE-LEALKNWLEIRAWKGLPDSDWIFLSRRGGPLSR---QQVYKLIRRL 120 (180)
T ss_pred ceeECCHHH-HHHHHHHHHHhccCCCCCCCeEEeCCCCCcCCH---HHHHHHHHHH
Confidence 344444332 3444555554 235667999988876543 3444455544
Done!