Query 030633
Match_columns 174
No_of_seqs 130 out of 390
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 18:37:41 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/030633.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2332-2336//hhsearch_pdb/030633hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2hjn_A MPS1 binder 1, maintena 1.0 1 1 393.0 16.8 165 8-173 29-236 (236)
2 1pi1_A MOB1A; mitotic EXIT net 1.0 1 1 370.7 14.2 142 32-173 1-183 (185)
3 3ee1_A Effector protein VIRA; 1.0 1 1 16.0 4.0 43 66-113 147-189 (400)
4 4dq1_A TS, tsase, thymidylate 1.0 1 1 15.4 -0.7 18 119-136 264-282 (321)
5 3v8h_A TS, tsase, thymidylate 1.0 1 1 15.4 -0.3 18 119-136 258-276 (327)
6 3kgb_A Thymidylate synthase 1/ 1.0 1 1 15.3 -0.3 18 119-136 234-252 (294)
7 3ed7_A Tsase, TS, thymidylate 1.0 1 1 15.2 -0.3 18 119-136 237-255 (295)
8 3qj7_A TS, tsase, thymidylate 1.0 1 1 15.0 -0.3 18 119-136 207-225 (264)
9 3uwl_A TS, tsase, thymidylate 1.0 1 1 15.0 -0.3 17 119-135 257-274 (315)
10 1b5e_A Protein (deoxycytidylat 1.0 1 1 14.7 -0.3 13 119-131 215-227 (246)
No 1
>2hjn_A MPS1 binder 1, maintenance of ploidy protein MOB1; homodimer, cell cycle; 2.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=392.95 Aligned_cols=165 Identities=42% Similarity=0.797 Sum_probs=157.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC-CCCCHH----------HCC----------------------------
Q ss_conf 99887788999999985000159998651488-412002----------113----------------------------
Q 030633 8 RNQRTFRPKKSAPSGSKGAQLRKHIDATLGSG-NLREAL----------WIS---------------------------- 48 (174)
Q Consensus 8 ~~~~t~~p~~~~~~g~~~~~l~~~~~~tl~~g-~l~~~V----------WlA---------------------------- 48 (174)
++++++...++.++|+++|+++++++++||+| |++++| |+|
T Consensus 29 ~~~~~~~~~~~~~~g~~~~~l~~~~~~~l~~g~~l~~~V~lP~g~D~neWlA~h~~dFfn~in~lyg~ise~CT~~tCP~ 108 (236)
T 2hjn_A 29 SHQKPFLQPQAGTTVTTHQDIKQIVEMTLGSEGVLNQAVKLPRGEDENEWLAVHCVDFYNQINMLYGSITEFCSPQTCPR 108 (236)
T ss_dssp CCCCCCC------------CHHHHHHHHHHGGGC---CCSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHGGGCCTTTCSS
T ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
T ss_conf 77887877677998760889999999984387279999559099865037999999999999999999971448223877
Q ss_pred ---CCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHH-HHHHHHHHHHHHHHHHHHHH
Q ss_conf ---79981674379998897203948999999999997518999987888999993239-99999999998999897543
Q 030633 49 ---STRYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFK-EVVKTIFKRLFRVYAHIYHS 124 (174)
Q Consensus 49 ---g~~~~Y~W~D~~~~kkp~~~sAp~YI~~l~~wv~~~l~de~iFPt~~g~~FP~~F~-~~v~~I~rrLfRVyaHiY~~ 124 (174)
|++|+|+|+|+.+ ++|++||||+||+++|+||+++|+||++|||+.|++||++|. +.|++|||||||||||||++
T Consensus 109 MsAg~~~~YlW~d~~~-kkp~~~~A~~Yi~~lm~wi~~~l~de~iFPs~~~~~FP~~F~~~~v~~I~RRLfRVyAHiY~~ 187 (236)
T 2hjn_A 109 MIATNEYEYLWAFQKG-QPPVSVSAPKYVECLMRWCQDQFDDESLFPSKVTGTFPEGFIQRVIQPILRRLFRVYAHIYCH 187 (236)
T ss_dssp CBSSTTEEECBCSSTT-SCCBCCCHHHHHHHHHHHHHHHHTCTTTSCSSTTCCCCTTHHHHTHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEECCCCC-CCCEEECHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 7689870477224898-987032789999999999998626975377999998993166899999999999999887888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 3899997321357888879999999876798856657169999986057
Q 030633 125 HFQKIVSLKEEAHLNTCFKHFILFTCEFGLIDKKELGPLQELIDSIIVP 173 (174)
Q Consensus 125 H~~~~~~l~~e~hlNt~fkHF~~F~~eF~Li~~kel~PL~~li~~l~~~ 173 (174)
||+.|.++++|+|||||||||++|++||+||+++|++||++||+.|+.+
T Consensus 188 Hf~~~~~l~~e~hLNt~FkHF~~F~~ef~Li~~kel~PL~~li~~l~~~ 236 (236)
T 2hjn_A 188 HFNEILELNLQTVLNTSFRHFCLFAQEFELLRPADFGPLLELVMELRDR 236 (236)
T ss_dssp SHHHHHHTTCHHHHHHHHHHHHHHHHHTTCSCGGGGGGGHHHHHHHCC-
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHC
T ss_conf 8999997466021235689999999994699978856699999999729
No 2
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=1.00 E-value=1 Score=370.66 Aligned_cols=142 Identities=65% Similarity=1.208 Sum_probs=137.6
Q ss_pred HHHHHCCCCCCCHH----------HCC-------------------------------CCCCEEEECCCCCCCCCCCCCH
Q ss_conf 98651488412002----------113-------------------------------7998167437999889720394
Q 030633 32 IDATLGSGNLREAL----------WIS-------------------------------STRYEYRWADGVQIKKPIEVSA 70 (174)
Q Consensus 32 ~~~tl~~g~l~~~V----------WlA-------------------------------g~~~~Y~W~D~~~~kkp~~~sA 70 (174)
+++|||+||++++| |+| |++|+|+|+|++++++|++|||
T Consensus 1 ~~~~l~~g~l~~~v~lP~g~d~~eWla~~~~df~~~in~ly~~i~e~Ct~~tCP~MsAg~~~~Ylw~d~~~~kkp~~~~A 80 (185)
T 1pi1_A 1 MEATLGSGNLRQAVMLPEGEDLNEWIAVNTVDFFNQINMLYGTITEFCTEASCPVMSAGPRYEYHWADGTNIKKPIKCSA 80 (185)
T ss_dssp CCCCTTCCCHHHHTSCCTTCCHHHHHHHHHHHHHHHHHHHHHHTGGGSCTTTCSSEESSTTCEECBCCSSSCCSCBCCCH
T ss_pred CCCCHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCH
T ss_conf 95203037699994590999651469999999999999999998636283348466689872798856888888830488
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 89999999999975189999878889999932399999999999899989754338999973213578888799999998
Q 030633 71 PKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTC 150 (174)
Q Consensus 71 p~YI~~l~~wv~~~l~de~iFPt~~g~~FP~~F~~~v~~I~rrLfRVyaHiY~~H~~~~~~l~~e~hlNt~fkHF~~F~~ 150 (174)
||||+++|+|++++|+||++|||+.|++||++|.+.|++|||||||||||||++||+.|.++++|+|||||||||++|++
T Consensus 81 ~~Yi~~~m~wi~~~l~d~~iFPs~~~~~fp~~f~~~~~~I~rRLfRVyaHiY~~Hf~~~~~l~~e~hlNt~f~hF~~F~~ 160 (185)
T 1pi1_A 81 PKYIDYLMTWVQDQLDDETLFPSKIGVPFPKNFMSVAKTILKRLFRVYAHIYHQHFDSVMQLQEEAHLNTSFKHFIFFVQ 160 (185)
T ss_dssp HHHHHHHHHHHHHHHTCTTTSCSSTTSCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHH
T ss_conf 99999999999987279742779999989856899999999999999977678888999874770201133799999999
Q ss_pred HHCCCCCCCCCCHHHHHHHHHCC
Q ss_conf 76798856657169999986057
Q 030633 151 EFGLIDKKELGPLQELIDSIIVP 173 (174)
Q Consensus 151 eF~Li~~kel~PL~~li~~l~~~ 173 (174)
||+||+++|++||++||+.|++.
T Consensus 161 ef~Li~~kel~Pl~~li~~~~~~ 183 (185)
T 1pi1_A 161 EFNLIDRRELAPLQELIEKLGSK 183 (185)
T ss_dssp HHTCSCGGGGGGGHHHHHHSSCC
T ss_pred HHCCCCHHHHHHHHHHHHHHHCC
T ss_conf 94799988887699999998603
No 3
>3ee1_A Effector protein VIRA; beta barrels, six-stranded beta barrel, hydrolase, protease, secreted, thiol protease, virulence; 3.01A {Shigella flexneri}
Probab=1.00 E-value=1 Score=15.98 Aligned_cols=43 Identities=23% Similarity=0.436 Sum_probs=33.3
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 203948999999999997518999987888999993239999999999
Q 030633 66 IEVSAPKYVEYLMDWIESQLDDESIFPQKLGAPFPSNFKEVVKTIFKR 113 (174)
Q Consensus 66 ~~~sAp~YI~~l~~wv~~~l~de~iFPt~~g~~FP~~F~~~v~~I~rr 113 (174)
+.-|||+-|+....-|.+.+-|.+.||.+.. +|.+.-..|+|-
T Consensus 147 thkpapevietaincctsiipnddyfpvkdt-----dfnsvwhdiyrd 189 (400)
T 3ee1_A 147 THKPAPEVIETAINCCTSIIPNDDYFPVKDT-----DFNSVWHDIYRD 189 (400)
T ss_dssp CSSCCHHHHHHHHHSCEEECCCCSBCCCCTT-----TTTTHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHCCCCCCCCCCCCCCC-----CHHHHHHHHHHH
T ss_conf 6898789999887442211678885555567-----503678999887
No 4
>4dq1_A TS, tsase, thymidylate synthase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: UMP; 2.71A {Staphylococcus aureus}
Probab=1.00 E-value=1 Score=15.40 Aligned_cols=18 Identities=44% Similarity=0.761 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHH-HHHHH
Q ss_conf 8975433899997-32135
Q 030633 119 AHIYHSHFQKIVS-LKEEA 136 (174)
Q Consensus 119 aHiY~~H~~~~~~-l~~e~ 136 (174)
||||-.|++++.+ |.-+|
T Consensus 264 aHIY~nH~e~~~~qL~R~p 282 (321)
T 4dq1_A 264 AHIYSNHIDAIQTQLARES 282 (321)
T ss_dssp EEEETTSHHHHHHHHHSCC
T ss_pred EEEEHHHHHHHHHHHCCCC
T ss_conf 8975889999999867899
No 5
>3v8h_A TS, tsase, thymidylate synthase; ssgcid, structural genomics, seattle S genomics center for infectious disease, transferase; HET: CIT; 1.65A {Burkholderia thailandensis}
Probab=1.00 E-value=1 Score=15.40 Aligned_cols=18 Identities=33% Similarity=0.648 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHH-HHHHH
Q ss_conf 8975433899997-32135
Q 030633 119 AHIYHSHFQKIVS-LKEEA 136 (174)
Q Consensus 119 aHiY~~H~~~~~~-l~~e~ 136 (174)
||||-+|++.+.+ |.-+|
T Consensus 258 aHIY~nHie~~~eqL~R~p 276 (327)
T 3v8h_A 258 AHIYENQLDMLKQQLEREP 276 (327)
T ss_dssp EEEEGGGHHHHHHHHHSCC
T ss_pred EEEEHHHHHHHHHHHCCCC
T ss_conf 5863537899999867899
No 6
>3kgb_A Thymidylate synthase 1/2; ssgcid, NIH, niaid, SBRI, UW, decode, methyltransferase, nucleotide biosynt transferase, structural genomics; 2.20A {Encephalitozoon cuniculi} SCOP: d.117.1.1
Probab=1.00 E-value=1 Score=15.26 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHH-HHHHH
Q ss_conf 8975433899997-32135
Q 030633 119 AHIYHSHFQKIVS-LKEEA 136 (174)
Q Consensus 119 aHiY~~H~~~~~~-l~~e~ 136 (174)
||||-.|++.+.+ |.-+|
T Consensus 234 aHIY~nH~e~~~~qL~R~p 252 (294)
T 3kgb_A 234 AHVYLDHVDSLRQQIQRPP 252 (294)
T ss_dssp EEEEGGGHHHHHHHTTSCC
T ss_pred EEECHHHHHHHHHHHCCCC
T ss_conf 8955889999999855899
No 7
>3ed7_A Tsase, TS, thymidylate synthase; transferase, methyltransferase, nucleotide biosynthesis; 1.56A {Homo sapiens} SCOP: d.117.1.1 PDB: 3ebu_A* 1hvy_A* 1ypv_A* 1hw3_A* 2onb_A* 3eaw_X* 3gg5_A 3gh0_A 3ef9_A 3edw_X 3ejl_A* 3gh2_X* 4gyh_A 4h1i_A 2rd8_A* 2rda_A 3h9k_A* 3hb8_A* 3ob7_A* 1ju6_A* ...
Probab=1.00 E-value=1 Score=15.22 Aligned_cols=18 Identities=39% Similarity=0.674 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHH-HHHHH
Q ss_conf 8975433899997-32135
Q 030633 119 AHIYHSHFQKIVS-LKEEA 136 (174)
Q Consensus 119 aHiY~~H~~~~~~-l~~e~ 136 (174)
||||-+|++++.+ |+-+|
T Consensus 237 aHIY~nH~e~~~~qL~R~p 255 (295)
T 3ed7_A 237 AHIYLNHIEPLKIQLQREP 255 (295)
T ss_dssp EEEEGGGHHHHHHHTTSCC
T ss_pred EEECHHHHHHHHHHHCCCC
T ss_conf 8953879999999855899
No 8
>3qj7_A TS, tsase, thymidylate synthase; thymidilate synthase, structural genomics, TB structural GEN consortium, TBSGC, transferase; HET: UMP SPM; 2.50A {Mycobacterium tuberculosis} SCOP: d.117.1.1
Probab=1.00 E-value=1 Score=14.96 Aligned_cols=18 Identities=33% Similarity=0.672 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHH-HHHHH
Q ss_conf 8975433899997-32135
Q 030633 119 AHIYHSHFQKIVS-LKEEA 136 (174)
Q Consensus 119 aHiY~~H~~~~~~-l~~e~ 136 (174)
||||-+|++++.+ |.-+|
T Consensus 207 aHIY~nh~e~~~~qL~R~p 225 (264)
T 3qj7_A 207 CHIYDNHVEQVRLQLSREP 225 (264)
T ss_dssp EEEEGGGHHHHHHHHTSCC
T ss_pred EEEEHHHHHHHHHHHCCCC
T ss_conf 9977889999999866899
No 9
>3uwl_A TS, tsase, thymidylate synthase; methyltransferase, transferase; HET: CME FOZ; 2.07A {Enterococcus faecalis} PDB: 3ik0_A* 1lcb_A* 1lce_A* 1lca_A* 1thy_A* 1tsl_A* 1tsm_A* 2tdm_A* 3bnz_A* 3byx_A* 3bz0_A* 3c06_A* 3c0a_A* 1nje_A* 3ijz_A* 3ik1_A* 4tms_A 1tsy_A* 1tsz_A 2g86_A* ...
Probab=1.00 E-value=1 Score=14.96 Aligned_cols=17 Identities=35% Similarity=0.778 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHH-HHHH
Q ss_conf 8975433899997-3213
Q 030633 119 AHIYHSHFQKIVS-LKEE 135 (174)
Q Consensus 119 aHiY~~H~~~~~~-l~~e 135 (174)
||||-+|++++.+ |.-+
T Consensus 257 ~HIY~nh~e~~~~ql~R~ 274 (315)
T 3uwl_A 257 AHLYQNHVEQMQEQLSRE 274 (315)
T ss_dssp EEEEGGGHHHHHHHHTSC
T ss_pred EEEEHHHHHHHHHHHCCC
T ss_conf 586176799999985779
No 10
>1b5e_A Protein (deoxycytidylate hydroxymethylase); DNTP synthesizing complex, transferase; HET: DCM; 1.60A {Enterobacteria phage T4} SCOP: d.117.1.1 PDB: 1b49_A* 1b5d_A*
Probab=1.00 E-value=1 Score=14.71 Aligned_cols=13 Identities=31% Similarity=0.628 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8975433899997
Q 030633 119 AHIYHSHFQKIVS 131 (174)
Q Consensus 119 aHiY~~H~~~~~~ 131 (174)
||||-+|++.+..
T Consensus 215 aHIY~nh~e~~~~ 227 (246)
T 1b5e_A 215 LHVYSRHFYLVDH 227 (246)
T ss_dssp EEEEGGGHHHHHH
T ss_pred EEECHHHHHHHHH
T ss_conf 8971778999999
Done!