BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030634
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1ZU2|A Chain A, Solution Nmr Structure Of The Plant Tom20 Mitochondrial
Import Receptor From Arabidopsis Thaliana
Length = 158
Score = 175 bits (444), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 86/151 (56%), Positives = 113/151 (74%), Gaps = 6/151 (3%)
Query: 4 SQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS 63
++++FDR+LL E R+ AE Y +PLDADNLTRWG LLELSQF S+SD+K++I EAI+
Sbjct: 8 TETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAIT 67
Query: 64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123
KFEEAL+IDP K +W +GNA+TS FLT D +EAK +FD A++ FQ+AVDE+P N Y
Sbjct: 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127
Query: 124 QKSLEVSTKAPELHMELHKHGINQQTLGGGS 154
KSLE++ KAP+LH E +K G+ GGS
Sbjct: 128 LKSLEMTAKAPQLHAEAYKQGL------GGS 152
>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA0|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 125
Score = 43.5 bits (101), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 33/121 (27%)
Query: 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRW---GEALLELSQFESVSDSKKIIN 59
+ Q D+D + E+ +K E LD +N W G A + ++
Sbjct: 20 YKQGDYDEAI--EYYQKALE-------LDPNNAEAWYNLGNAYYKQGDYD---------- 60
Query: 60 EAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119
EAI +++AL +DP ++LGNA+ +GD+D+A E +Q+A++ +P
Sbjct: 61 EAIEYYQKALELDPNNAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELDPN 109
Query: 120 N 120
N
Sbjct: 110 N 110
Score = 26.9 bits (58), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 22/91 (24%)
Query: 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRW---GEALLELSQFESVSDSKKIIN 59
+ Q D+D + E+ +K E LD +N W G A + ++
Sbjct: 54 YKQGDYDEAI--EYYQKALE-------LDPNNAEAWYNLGNAYYKQGDYD---------- 94
Query: 60 EAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90
EAI +++AL +DP +LGNA G
Sbjct: 95 EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125
>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Trigonal Crystal Form)
pdb|2HYZ|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
(Orthorombic Crystal Form)
Length = 136
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 48/104 (46%), Gaps = 32/104 (30%)
Query: 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
+EAI +++AL +DP ++LGNA+ +GD+D+A E +Q+A++ +
Sbjct: 17 YDEAIEYYQKALELDPRSAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELD 65
Query: 118 PTN---------------------ELYQKSLEVSTKAPELHMEL 140
P + E YQK+LE+ ++ E L
Sbjct: 66 PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNL 109
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 54/116 (46%), Gaps = 27/116 (23%)
Query: 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAI 62
+ Q D+D + E+ +K E DP A+ G A + + +EAI
Sbjct: 46 YKQGDYDEAI--EYYQKALEL----DPRSAEAWYNLGNAYYKQGDY----------DEAI 89
Query: 63 SKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
+++AL +DP ++LGNA+ +GD+D+A E +Q+A++ +P
Sbjct: 90 EYYQKALELDPRSAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELDP 134
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 32/84 (38%)
Query: 78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN----------------- 120
++LGNA+ +GD+D+A E +Q+A++ +P +
Sbjct: 3 AWYNLGNAYYK-----------QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDY 51
Query: 121 ----ELYQKSLEVSTKAPELHMEL 140
E YQK+LE+ ++ E L
Sbjct: 52 DEAIEYYQKALELDPRSAEAWYNL 75
>pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
pdb|1NA3|B Chain B, Design Of Stable Alpha-Helical Arrays From An Idealized
Tpr Motif
Length = 91
Score = 40.0 bits (92), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 36/63 (57%), Gaps = 11/63 (17%)
Query: 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
+EAI +++AL +DP ++LGNA+ +GD+D+A E +Q+A++ +
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELD 73
Query: 118 PTN 120
P N
Sbjct: 74 PNN 76
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 37/93 (39%), Gaps = 33/93 (35%)
Query: 70 VIDPAKHYTLW-SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN-------- 120
+DP W +LGNA+ +GD+D+A E +Q+A++ +P N
Sbjct: 2 AMDPGNSAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELDPNNAEAWYNLG 50
Query: 121 -------------ELYQKSLEVSTKAPELHMEL 140
E YQK+LE+ E L
Sbjct: 51 NAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 83
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 22/91 (24%)
Query: 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRW---GEALLELSQFESVSDSKKIIN 59
+ Q D+D + E+ +K E LD +N W G A + ++
Sbjct: 20 YKQGDYDEAI--EYYQKALE-------LDPNNAEAWYNLGNAYYKQGDYD---------- 60
Query: 60 EAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90
EAI +++AL +DP +LGNA G
Sbjct: 61 EAIEYYQKALELDPNNAEAKQNLGNAKQKQG 91
>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|B Chain B, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|C Chain C, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|D Chain D, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
pdb|3KD7|E Chain E, Designed Tpr Module (Ctpr390) In Complex With Its
Peptide-Ligand (Hsp90 Peptide)
Length = 125
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 54/121 (44%), Gaps = 33/121 (27%)
Query: 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRW---GEALLELSQFESVSDSKKIIN 59
+ Q D+ + + E+ +K E LD +N + W G A + ++
Sbjct: 20 YKQGDYQKAI--EYYQKALE-------LDPNNASAWYNLGNAYYKQGDYQ---------- 60
Query: 60 EAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119
+AI +++AL +DP + GNA+ +GD+ KA E +Q+A++ +P
Sbjct: 61 KAIEYYQKALELDPNNAKAWYRRGNAYYK-----------QGDYQKAIEDYQKALELDPN 109
Query: 120 N 120
N
Sbjct: 110 N 110
>pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix
Length = 70
Score = 37.7 bits (86), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 11/61 (18%)
Query: 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
+EAI +++AL +DP ++LGNA+ +GD+D+A E +Q+A++ +
Sbjct: 19 YDEAIEYYQKALELDPRSAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELD 67
Query: 118 P 118
P
Sbjct: 68 P 68
>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3
Length = 125
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 11/63 (17%)
Query: 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117
+EAI +++AL + P ++LGNA+ +GD+D+A E +Q+A++
Sbjct: 59 YDEAIEYYQKALELYPNNAEAWYNLGNAYYK-----------QGDYDEAIEYYQKALELY 107
Query: 118 PTN 120
P N
Sbjct: 108 PNN 110
>pdb|3PE3|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|B Chain B, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE3|D Chain D, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|A Chain A, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3PE4|C Chain C, Structure Of Human O-Glcnac Transferase And Its Complex
With A Peptide Substrate
pdb|3TAX|A Chain A, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|3TAX|C Chain C, A Neutral Diphosphate Mimic Crosslinks The Active Site Of
Human O- Glcnac Transferase
pdb|4AY5|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY5|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With Udp And
Glycopeptide
pdb|4AY6|A Chain A, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|B Chain B, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|C Chain C, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4AY6|D Chain D, Human O-Glcnac Transferase (Ogt) In Complex With
Udp-5sglcnac And Substrate Peptide
pdb|4GYW|A Chain A, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYW|C Chain C, Crystal Structure Of Human O-Glcnac Transferase In Complex
With Udp And A Glycopeptide
pdb|4GYY|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GYY|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac And A Peptide Substrate
pdb|4GZ3|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ3|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With Udp
And A Thioglycopeptide
pdb|4GZ5|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ5|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-Glcnac
pdb|4GZ6|A Chain A, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|B Chain B, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|C Chain C, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
pdb|4GZ6|D Chain D, Crystal Structure Of Human O-Glcnac Transferase With
Udp-5sglcnac
Length = 723
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/73 (23%), Positives = 35/73 (47%), Gaps = 11/73 (15%)
Query: 46 SQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDK 105
S SV + + EA+ ++EA+ I P + +A+++ G ++ + +G
Sbjct: 47 SNLASVLQQQGKLQEALMHYKEAIRISP-------TFADAYSNMGNTLKEMQDVQG---- 95
Query: 106 ASECFQRAVDEEP 118
A +C+ RA+ P
Sbjct: 96 ALQCYTRAIQINP 108
>pdb|3Q1Y|A Chain A, Allosteric Regulation By Lysine Residue: A Novel
Anion-Hole Formation In The Ribokinase Family
Length = 320
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 52/128 (40%), Gaps = 16/128 (12%)
Query: 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWS----LGN 84
D + T EA +SQ + K+I + K E+ +VI P HYTL L
Sbjct: 101 DTNGSTMIPEAGFTVSQTNKDNLLKQIAKKV--KKEDMVVIAGSPPPHYTLSDFKELLRT 158
Query: 85 AHTSCGFLTADLS--------EAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPEL 136
+ FL D S E DF K +E A+ +E TN L + ++ K P L
Sbjct: 159 VKATGAFLGCDNSGEYLNLAVEMGVDFIKPNEDEVIAILDEKTNSLEENIRTLAEKIPYL 218
Query: 137 HMELHKHG 144
+ L G
Sbjct: 219 VVSLGAKG 226
>pdb|4GA0|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 26.6 bits (57), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 65 FEEALVIDPAKHYTLWSLG------NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
+ EA D AK Y + AH G L E + + DKA EC++R+V+ P
Sbjct: 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY----ELEENTDKAVECYRRSVELNP 96
Query: 119 TNE 121
T +
Sbjct: 97 TQK 99
>pdb|4GA2|A Chain A, Structure Of The N-Terminal Domain Of Nup358
Length = 150
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
Query: 65 FEEALVIDPAKHYTLWSLG------NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118
+ EA D AK Y + AH G L E + + DKA EC++R+V+ P
Sbjct: 41 YYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLY----ELEENTDKAVECYRRSVELNP 96
Query: 119 TNE 121
T +
Sbjct: 97 TQK 99
>pdb|1LZK|A Chain A, Bacterial Heroin Esterase Complex With Transition State
Analog Dimethylarsenic Acid
Length = 323
Score = 26.6 bits (57), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 118 PTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASS 158
P N+ Y L + A EL ++ + + Q+ GGG +A +
Sbjct: 129 PVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGT 169
>pdb|2G5G|X Chain X, Cofacial Heme Binding To Chan Of Campylobacter Jejuni
Length = 268
Score = 26.6 bits (57), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 33/157 (21%), Positives = 63/157 (40%), Gaps = 19/157 (12%)
Query: 17 NRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS--DSKKIINEAISKFEEALVIDPA 74
N+KT +AN + L+ D + +W + QF +V KI+ +S+ E + + A
Sbjct: 99 NKKTIKANELTNALNWDKVWKWK----DYEQFVNVVFYSKSKILGANLSRSEITSIYNGA 154
Query: 75 KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAP 134
+ G+++ K FD S ++ E EL K +E+
Sbjct: 155 QPLK-----------GYVSTTNEVKKQLFDIIS--LSHKLNPEENKELLDKLVEIQQFKD 201
Query: 135 ELHMELHKHGINQQTLGGGSSASSAQVNFCICVHQMK 171
++ H +N+ L GS +S ++ + + K
Sbjct: 202 RRXADVLVHHVNKVLLLAGSYHTSKKIGIPLHIQDFK 238
>pdb|1LZL|A Chain A, Bacterial Heroin Esterase
Length = 323
Score = 26.6 bits (57), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 118 PTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASS 158
P N+ Y L + A EL ++ + + Q+ GGG +A +
Sbjct: 129 PVNDCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGT 169
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.128 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,821,606
Number of Sequences: 62578
Number of extensions: 168408
Number of successful extensions: 527
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 30
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (23.1 bits)