Query 030634
Match_columns 174
No_of_seqs 196 out of 1186
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 16:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030634.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030634hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06552 TOM20_plant: Plant sp 99.9 6.5E-28 1.4E-32 187.4 10.1 149 8-156 1-149 (186)
2 KOG4626 O-linked N-acetylgluco 99.8 8.3E-19 1.8E-23 156.7 14.9 153 7-170 227-435 (966)
3 KOG4626 O-linked N-acetylgluco 99.8 8.8E-19 1.9E-23 156.6 11.3 151 9-169 195-400 (966)
4 PRK15359 type III secretion sy 99.7 4.9E-16 1.1E-20 117.4 12.8 97 7-124 33-129 (144)
5 KOG0553 TPR repeat-containing 99.7 2.7E-16 5.9E-21 130.5 11.1 97 12-129 95-191 (304)
6 PRK12370 invasion protein regu 99.7 4.5E-15 9.7E-20 133.8 18.0 148 12-171 275-455 (553)
7 PRK11189 lipoprotein NlpI; Pro 99.7 2.5E-15 5.4E-20 125.7 14.8 94 7-121 73-166 (296)
8 TIGR00990 3a0801s09 mitochondr 99.7 2.6E-15 5.7E-20 136.4 15.8 121 9-150 342-483 (615)
9 PRK12370 invasion protein regu 99.6 9.1E-15 2E-19 131.8 17.1 119 11-150 317-457 (553)
10 KOG1126 DNA-binding cell divis 99.6 1.5E-15 3.3E-20 136.1 10.5 144 8-172 431-606 (638)
11 TIGR00990 3a0801s09 mitochondr 99.6 2.3E-14 4.9E-19 130.3 17.0 140 11-171 307-481 (615)
12 PRK15359 type III secretion sy 99.6 7.8E-15 1.7E-19 110.8 11.4 107 18-148 13-140 (144)
13 TIGR02552 LcrH_SycD type III s 99.6 5.5E-14 1.2E-18 103.2 11.3 100 8-128 27-126 (135)
14 PRK09782 bacteriophage N4 rece 99.5 1.3E-13 2.9E-18 131.4 15.2 129 8-158 619-769 (987)
15 PRK10370 formate-dependent nit 99.5 4E-13 8.6E-18 106.7 14.4 91 10-121 51-144 (198)
16 TIGR02521 type_IV_pilW type IV 99.5 1.2E-12 2.6E-17 101.1 16.8 123 7-150 40-185 (234)
17 PLN03088 SGT1, suppressor of 99.5 2.4E-13 5.2E-18 116.8 13.8 97 8-125 12-108 (356)
18 PRK15363 pathogenicity island 99.5 1.7E-13 3.7E-18 105.1 11.1 92 7-119 44-135 (157)
19 PF13414 TPR_11: TPR repeat; P 99.5 2.2E-13 4.7E-18 89.5 8.9 68 30-118 1-69 (69)
20 PRK15174 Vi polysaccharide exp 99.5 1.8E-12 4E-17 119.2 17.6 152 10-171 88-298 (656)
21 PRK10370 formate-dependent nit 99.5 5.7E-13 1.2E-17 105.8 12.3 96 7-121 82-178 (198)
22 COG3063 PilF Tfp pilus assembl 99.5 1.6E-12 3.5E-17 104.9 14.3 121 8-150 45-189 (250)
23 PRK09782 bacteriophage N4 rece 99.5 1.3E-12 2.8E-17 124.7 15.0 115 12-148 590-725 (987)
24 PRK15174 Vi polysaccharide exp 99.5 2.4E-12 5.2E-17 118.4 16.0 125 9-150 223-368 (656)
25 PRK11447 cellulose synthase su 99.5 3E-12 6.5E-17 124.1 17.2 142 7-169 312-541 (1157)
26 TIGR02917 PEP_TPR_lipo putativ 99.4 1E-11 2.2E-16 113.0 17.6 139 8-168 713-882 (899)
27 KOG1155 Anaphase-promoting com 99.4 3.9E-12 8.5E-17 111.1 13.8 122 8-150 340-482 (559)
28 TIGR03302 OM_YfiO outer membra 99.4 5.8E-12 1.3E-16 100.8 13.9 152 7-171 42-217 (235)
29 TIGR02795 tol_pal_ybgF tol-pal 99.4 7.4E-12 1.6E-16 88.9 12.8 100 8-128 12-117 (119)
30 PLN02789 farnesyltranstransfer 99.4 7.9E-12 1.7E-16 106.2 15.2 143 8-169 47-229 (320)
31 TIGR02917 PEP_TPR_lipo putativ 99.4 1.9E-11 4.2E-16 111.2 17.7 154 8-171 611-818 (899)
32 PRK11447 cellulose synthase su 99.4 1.2E-11 2.7E-16 119.8 17.1 117 8-145 279-430 (1157)
33 TIGR02521 type_IV_pilW type IV 99.4 2.4E-11 5.2E-16 93.8 15.2 122 7-149 74-218 (234)
34 cd00189 TPR Tetratricopeptide 99.4 7.5E-12 1.6E-16 82.2 10.7 92 7-119 9-100 (100)
35 TIGR02552 LcrH_SycD type III s 99.4 1.1E-11 2.5E-16 90.8 12.0 82 19-121 4-85 (135)
36 PF13432 TPR_16: Tetratricopep 99.4 2.8E-12 6E-17 83.4 7.5 65 36-121 1-65 (65)
37 KOG1126 DNA-binding cell divis 99.4 3.5E-12 7.6E-17 114.7 10.5 120 10-150 467-607 (638)
38 PRK11189 lipoprotein NlpI; Pro 99.4 2.5E-11 5.5E-16 101.5 15.1 103 12-135 40-167 (296)
39 PLN02789 farnesyltranstransfer 99.4 3E-11 6.4E-16 102.7 15.4 122 9-149 82-232 (320)
40 KOG1125 TPR repeat-containing 99.3 1.2E-11 2.6E-16 110.0 11.5 129 12-150 299-514 (579)
41 PF13429 TPR_15: Tetratricopep 99.3 3.7E-11 8E-16 99.0 12.6 122 8-150 120-264 (280)
42 CHL00033 ycf3 photosystem I as 99.3 4.1E-11 8.8E-16 92.0 11.4 104 8-121 45-154 (168)
43 PRK15179 Vi polysaccharide bio 99.3 5.8E-11 1.3E-15 109.9 14.2 91 10-121 98-188 (694)
44 PF12895 Apc3: Anaphase-promot 99.3 9.8E-12 2.1E-16 85.1 6.8 81 11-113 2-84 (84)
45 PRK15363 pathogenicity island 99.3 8E-11 1.7E-15 90.4 12.4 96 21-150 23-119 (157)
46 KOG1155 Anaphase-promoting com 99.3 1.3E-10 2.8E-15 101.7 15.0 151 11-172 275-481 (559)
47 PRK11788 tetratricopeptide rep 99.3 2.1E-10 4.6E-15 97.5 16.2 132 7-150 116-298 (389)
48 KOG0547 Translocase of outer m 99.3 1.8E-11 3.9E-16 107.6 9.6 139 12-171 340-510 (606)
49 PRK02603 photosystem I assembl 99.3 7E-11 1.5E-15 91.2 11.0 103 8-120 45-153 (172)
50 KOG1125 TPR repeat-containing 99.2 1.4E-11 3E-16 109.7 7.4 119 8-150 440-558 (579)
51 PRK11788 tetratricopeptide rep 99.2 4.3E-10 9.4E-15 95.6 16.0 131 9-150 46-230 (389)
52 KOG0547 Translocase of outer m 99.2 1.1E-10 2.5E-15 102.6 12.1 133 8-150 370-553 (606)
53 PRK10049 pgaA outer membrane p 99.2 3.2E-10 6.9E-15 106.0 15.9 114 12-146 29-162 (765)
54 PF13429 TPR_15: Tetratricopep 99.2 6.5E-11 1.4E-15 97.5 8.3 94 7-121 155-248 (280)
55 COG5010 TadD Flp pilus assembl 99.2 5.1E-10 1.1E-14 91.6 13.0 87 12-119 80-166 (257)
56 PRK10803 tol-pal system protei 99.2 5E-10 1.1E-14 92.9 13.1 98 11-129 156-259 (263)
57 PRK15179 Vi polysaccharide bio 99.2 6E-10 1.3E-14 103.2 15.0 115 15-150 69-204 (694)
58 KOG0548 Molecular co-chaperone 99.2 1.8E-10 3.9E-15 101.9 10.7 102 6-128 366-471 (539)
59 PLN03098 LPA1 LOW PSII ACCUMUL 99.2 2.7E-10 5.8E-15 99.9 11.6 70 27-117 70-142 (453)
60 TIGR03302 OM_YfiO outer membra 99.1 9.2E-10 2E-14 88.0 12.5 121 7-150 79-219 (235)
61 KOG3060 Uncharacterized conser 99.1 1.4E-09 3.1E-14 89.1 13.7 116 8-144 96-235 (289)
62 PRK15331 chaperone protein Sic 99.1 5.4E-10 1.2E-14 86.3 10.6 93 7-121 46-138 (165)
63 KOG1129 TPR repeat-containing 99.1 1.1E-09 2.5E-14 92.8 13.2 116 8-145 233-369 (478)
64 KOG4162 Predicted calmodulin-b 99.1 4.5E-10 9.8E-15 102.8 11.3 93 8-121 694-788 (799)
65 COG3063 PilF Tfp pilus assembl 99.1 3.1E-10 6.8E-15 91.8 8.9 94 7-121 78-173 (250)
66 COG5010 TadD Flp pilus assembl 99.1 9.4E-10 2E-14 90.1 11.7 107 10-150 112-218 (257)
67 PRK10049 pgaA outer membrane p 99.1 1.7E-09 3.8E-14 101.1 13.5 93 7-121 58-150 (765)
68 PF13414 TPR_11: TPR repeat; P 99.1 4.4E-10 9.6E-15 73.6 6.6 57 7-73 12-69 (69)
69 PF13432 TPR_16: Tetratricopep 99.1 5E-10 1.1E-14 72.7 6.8 59 8-76 7-65 (65)
70 KOG1129 TPR repeat-containing 99.1 5.4E-10 1.2E-14 94.8 8.6 142 8-170 266-442 (478)
71 PLN03088 SGT1, suppressor of 99.1 2.4E-09 5.3E-14 92.0 12.5 90 35-145 5-115 (356)
72 KOG0624 dsRNA-activated protei 99.1 2E-09 4.3E-14 91.8 11.3 119 11-150 51-205 (504)
73 COG4235 Cytochrome c biogenesi 99.0 4.4E-09 9.6E-14 87.7 12.3 96 8-121 166-261 (287)
74 KOG0548 Molecular co-chaperone 99.0 4.8E-09 1E-13 93.0 12.9 118 9-147 335-473 (539)
75 KOG0553 TPR repeat-containing 99.0 2.1E-09 4.6E-14 89.7 10.0 82 56-148 95-197 (304)
76 PF13371 TPR_9: Tetratricopept 99.0 2.1E-09 4.6E-14 71.0 8.1 68 39-127 2-69 (73)
77 PF14559 TPR_19: Tetratricopep 99.0 1.2E-09 2.6E-14 71.2 6.8 65 10-84 3-67 (68)
78 PF14559 TPR_19: Tetratricopep 99.0 1.1E-09 2.4E-14 71.3 6.6 60 57-127 6-65 (68)
79 KOG0543 FKBP-type peptidyl-pro 99.0 5.3E-09 1.1E-13 90.3 12.3 96 7-123 217-327 (397)
80 KOG1173 Anaphase-promoting com 99.0 1.4E-08 3.1E-13 90.6 14.8 132 8-150 322-505 (611)
81 PRK11906 transcriptional regul 99.0 6.8E-09 1.5E-13 91.3 12.3 111 13-135 273-407 (458)
82 PRK11906 transcriptional regul 99.0 4.4E-09 9.4E-14 92.5 11.1 91 10-121 316-406 (458)
83 KOG1173 Anaphase-promoting com 99.0 3.4E-09 7.3E-14 94.5 10.3 110 7-127 389-529 (611)
84 CHL00033 ycf3 photosystem I as 99.0 9.1E-09 2E-13 78.8 10.8 102 13-148 14-120 (168)
85 KOG2076 RNA polymerase III tra 99.0 1E-08 2.2E-13 95.3 12.7 89 12-121 153-241 (895)
86 TIGR02795 tol_pal_ybgF tol-pal 99.0 1.2E-08 2.7E-13 72.1 10.6 87 32-149 2-91 (119)
87 PRK14574 hmsH outer membrane p 98.9 2.8E-08 6.1E-13 93.7 15.7 91 10-121 46-136 (822)
88 PF12688 TPR_5: Tetratrico pep 98.9 2.8E-08 6.2E-13 73.3 12.3 100 7-129 10-115 (120)
89 cd00189 TPR Tetratricopeptide 98.9 1.1E-08 2.4E-13 66.8 8.9 82 34-149 2-83 (100)
90 PRK14574 hmsH outer membrane p 98.9 2E-08 4.4E-13 94.7 13.8 118 10-148 80-217 (822)
91 PRK10153 DNA-binding transcrip 98.9 3.5E-08 7.7E-13 88.8 14.2 94 13-119 357-452 (517)
92 COG4235 Cytochrome c biogenesi 98.9 2.8E-08 6.1E-13 83.0 12.5 90 14-121 138-227 (287)
93 PRK02603 photosystem I assembl 98.9 2.4E-08 5.1E-13 77.0 11.0 73 28-121 31-106 (172)
94 KOG0550 Molecular chaperone (D 98.9 1.4E-08 2.9E-13 88.1 10.4 134 6-150 57-303 (486)
95 PF13371 TPR_9: Tetratricopept 98.9 1.3E-08 2.9E-13 67.1 7.7 67 7-83 4-70 (73)
96 cd05804 StaR_like StaR_like; a 98.8 2.5E-08 5.4E-13 83.9 10.0 91 7-118 123-217 (355)
97 cd05804 StaR_like StaR_like; a 98.8 6.6E-08 1.4E-12 81.3 12.4 99 9-119 54-180 (355)
98 PF13424 TPR_12: Tetratricopep 98.8 4.7E-09 1E-13 70.3 4.3 67 29-116 2-75 (78)
99 KOG2002 TPR-containing nuclear 98.8 8.1E-08 1.8E-12 90.0 13.7 98 7-121 316-414 (1018)
100 COG4783 Putative Zn-dependent 98.8 1.5E-07 3.2E-12 83.0 14.2 121 9-150 317-441 (484)
101 KOG4234 TPR repeat-containing 98.8 6E-08 1.3E-12 77.6 10.6 101 11-132 108-213 (271)
102 PRK10747 putative protoheme IX 98.8 4E-07 8.6E-12 79.2 16.6 151 8-170 163-374 (398)
103 KOG3060 Uncharacterized conser 98.8 1.2E-07 2.6E-12 78.0 11.9 95 9-121 131-225 (289)
104 TIGR00540 hemY_coli hemY prote 98.8 5.3E-07 1.1E-11 78.6 16.2 129 11-150 166-351 (409)
105 PRK10153 DNA-binding transcrip 98.7 1.5E-07 3.3E-12 84.8 12.2 90 13-124 399-490 (517)
106 COG4785 NlpI Lipoprotein NlpI, 98.7 2E-07 4.3E-12 75.5 11.5 94 7-121 74-167 (297)
107 KOG0550 Molecular chaperone (D 98.7 3E-08 6.6E-13 86.0 7.3 121 9-150 180-337 (486)
108 KOG1840 Kinesin light chain [C 98.7 1.9E-07 4.1E-12 83.8 12.4 124 6-150 207-383 (508)
109 KOG2002 TPR-containing nuclear 98.7 2.2E-07 4.9E-12 87.1 12.7 137 14-171 146-321 (1018)
110 KOG1156 N-terminal acetyltrans 98.7 1.5E-07 3.2E-12 85.3 10.8 89 12-121 21-109 (700)
111 PRK10866 outer membrane biogen 98.6 1.7E-06 3.6E-11 70.9 14.2 102 10-121 44-158 (243)
112 PF13525 YfiO: Outer membrane 98.6 6.1E-07 1.3E-11 71.2 11.3 99 10-121 17-124 (203)
113 PF09976 TPR_21: Tetratricopep 98.6 3.6E-07 7.7E-12 68.6 9.0 84 9-114 59-145 (145)
114 PF13431 TPR_17: Tetratricopep 98.6 5.3E-08 1.1E-12 56.1 3.3 34 64-108 1-34 (34)
115 PRK10803 tol-pal system protei 98.6 1E-06 2.2E-11 73.2 12.1 89 31-150 141-233 (263)
116 KOG4648 Uncharacterized conser 98.6 2E-07 4.3E-12 79.9 7.8 100 7-127 106-205 (536)
117 TIGR00540 hemY_coli hemY prote 98.6 2.6E-06 5.5E-11 74.3 14.9 122 8-150 128-279 (409)
118 PRK14720 transcript cleavage f 98.6 9.5E-07 2E-11 83.8 12.6 104 6-121 39-150 (906)
119 PF13428 TPR_14: Tetratricopep 98.6 1.4E-07 3.1E-12 57.1 4.8 43 32-84 1-43 (44)
120 KOG1174 Anaphase-promoting com 98.5 1.3E-06 2.9E-11 76.2 12.3 89 12-121 314-402 (564)
121 PRK10747 putative protoheme IX 98.5 6.8E-07 1.5E-11 77.7 10.6 84 12-117 308-391 (398)
122 KOG1127 TPR repeat-containing 98.5 5.6E-07 1.2E-11 84.9 10.0 97 7-121 11-108 (1238)
123 KOG2003 TPR repeat-containing 98.5 2.4E-07 5.1E-12 81.8 7.1 115 13-148 471-606 (840)
124 KOG4642 Chaperone-dependent E3 98.5 5.2E-07 1.1E-11 73.7 8.1 85 11-116 23-107 (284)
125 PF00515 TPR_1: Tetratricopept 98.5 2.6E-07 5.6E-12 52.4 4.6 34 76-120 1-34 (34)
126 KOG1174 Anaphase-promoting com 98.5 1.1E-06 2.4E-11 76.6 10.5 110 9-127 379-511 (564)
127 KOG4162 Predicted calmodulin-b 98.5 1.3E-06 2.8E-11 80.5 11.4 109 8-150 660-770 (799)
128 KOG0543 FKBP-type peptidyl-pro 98.5 1E-06 2.2E-11 76.3 10.1 93 8-120 267-359 (397)
129 KOG1840 Kinesin light chain [C 98.5 3.3E-06 7E-11 75.9 13.6 99 8-117 251-397 (508)
130 KOG2076 RNA polymerase III tra 98.5 1.6E-06 3.6E-11 80.9 11.9 93 7-120 182-274 (895)
131 KOG1128 Uncharacterized conser 98.5 6.5E-07 1.4E-11 82.1 8.9 91 10-121 497-587 (777)
132 PF06552 TOM20_plant: Plant sp 98.5 1.2E-06 2.6E-11 68.7 9.2 77 9-85 46-123 (186)
133 KOG1156 N-terminal acetyltrans 98.5 1.4E-06 3.1E-11 79.0 10.8 72 9-90 52-123 (700)
134 COG4783 Putative Zn-dependent 98.5 1.4E-06 3E-11 76.9 10.4 99 9-117 351-455 (484)
135 COG1729 Uncharacterized protei 98.5 4.1E-06 8.9E-11 69.3 12.3 96 10-126 153-254 (262)
136 PF12688 TPR_5: Tetratrico pep 98.4 2.9E-06 6.3E-11 62.6 10.2 69 32-121 1-72 (120)
137 PF13512 TPR_18: Tetratricopep 98.4 3.8E-06 8.2E-11 63.6 11.0 108 10-127 22-139 (142)
138 PF07719 TPR_2: Tetratricopept 98.4 6.2E-07 1.4E-11 50.5 5.2 34 76-120 1-34 (34)
139 KOG1127 TPR repeat-containing 98.4 2.6E-06 5.7E-11 80.5 11.6 118 12-150 472-612 (1238)
140 KOG0624 dsRNA-activated protei 98.4 1E-05 2.2E-10 69.5 12.6 89 12-121 169-257 (504)
141 PF09976 TPR_21: Tetratricopep 98.3 1.6E-05 3.5E-10 59.5 12.1 105 11-150 24-134 (145)
142 KOG0495 HAT repeat protein [RN 98.3 9.6E-06 2.1E-10 74.2 12.5 101 10-121 663-787 (913)
143 PRK15331 chaperone protein Sic 98.3 8.7E-06 1.9E-10 63.1 10.5 77 24-121 29-105 (165)
144 KOG0376 Serine-threonine phosp 98.3 7E-07 1.5E-11 78.7 4.9 95 12-127 18-112 (476)
145 KOG2003 TPR repeat-containing 98.3 1.1E-05 2.4E-10 71.4 12.0 138 12-170 504-673 (840)
146 PF12895 Apc3: Anaphase-promot 98.3 1.3E-06 2.7E-11 59.5 4.9 53 56-120 3-57 (84)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 2E-05 4.3E-10 69.0 13.3 87 11-121 182-268 (395)
148 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 7.8E-06 1.7E-10 71.5 10.7 81 10-111 212-292 (395)
149 PRK10866 outer membrane biogen 98.3 8.7E-06 1.9E-10 66.7 10.4 71 30-121 30-103 (243)
150 PF00515 TPR_1: Tetratricopept 98.3 1.5E-06 3.3E-11 49.2 4.0 34 32-75 1-34 (34)
151 PLN03098 LPA1 LOW PSII ACCUMUL 98.3 5.5E-06 1.2E-10 73.1 9.4 54 8-71 85-141 (453)
152 PF04733 Coatomer_E: Coatomer 98.2 5E-06 1.1E-10 69.9 7.8 91 13-124 182-273 (290)
153 PF07719 TPR_2: Tetratricopept 98.2 3.2E-06 7E-11 47.5 4.7 34 32-75 1-34 (34)
154 KOG1128 Uncharacterized conser 98.2 3.3E-06 7.2E-11 77.6 6.8 127 8-146 434-599 (777)
155 COG2956 Predicted N-acetylgluc 98.2 6.7E-05 1.5E-09 63.9 13.5 104 7-121 116-248 (389)
156 PF13431 TPR_17: Tetratricopep 98.1 3.1E-06 6.7E-11 48.6 3.3 28 21-48 2-29 (34)
157 KOG4555 TPR repeat-containing 98.1 0.0001 2.2E-09 55.7 11.9 102 12-135 57-162 (175)
158 PRK14720 transcript cleavage f 98.1 3.3E-05 7.2E-10 73.5 11.4 114 7-121 125-257 (906)
159 PF13428 TPR_14: Tetratricopep 98.1 1.5E-05 3.3E-10 48.0 5.6 41 76-127 1-41 (44)
160 PF13181 TPR_8: Tetratricopept 98.0 1.1E-05 2.4E-10 45.5 4.3 33 77-120 2-34 (34)
161 PF13525 YfiO: Outer membrane 98.0 5.5E-05 1.2E-09 60.0 9.6 70 31-121 4-76 (203)
162 PF13512 TPR_18: Tetratricopep 98.0 8.9E-05 1.9E-09 56.2 10.0 70 31-121 9-81 (142)
163 PF04733 Coatomer_E: Coatomer 98.0 7.6E-05 1.6E-09 62.7 10.6 109 8-150 141-251 (290)
164 KOG0545 Aryl-hydrocarbon recep 97.9 9.8E-05 2.1E-09 61.0 10.1 93 8-121 188-298 (329)
165 COG4700 Uncharacterized protei 97.9 0.00021 4.6E-09 57.0 11.5 84 14-119 72-156 (251)
166 COG2956 Predicted N-acetylgluc 97.9 0.00025 5.4E-09 60.5 12.2 89 12-121 194-283 (389)
167 COG0457 NrfG FOG: TPR repeat [ 97.9 0.001 2.2E-08 48.5 14.1 121 7-148 68-216 (291)
168 PF12569 NARP1: NMDA receptor- 97.9 0.00012 2.6E-09 66.2 10.5 90 7-117 203-292 (517)
169 COG1729 Uncharacterized protei 97.9 0.0002 4.4E-09 59.3 10.7 86 33-149 142-230 (262)
170 KOG1308 Hsp70-interacting prot 97.8 4.9E-06 1.1E-10 71.0 0.8 91 10-121 126-216 (377)
171 PF13424 TPR_12: Tetratricopep 97.8 2.5E-05 5.5E-10 52.0 4.2 56 7-72 14-76 (78)
172 COG0457 NrfG FOG: TPR repeat [ 97.8 0.00038 8.3E-09 50.8 10.9 91 8-119 140-234 (291)
173 KOG0495 HAT repeat protein [RN 97.8 0.00029 6.3E-09 64.8 11.9 111 11-121 597-753 (913)
174 KOG3785 Uncharacterized conser 97.8 0.00029 6.3E-09 61.0 11.2 120 6-150 30-157 (557)
175 KOG2053 Mitochondrial inherita 97.8 0.0003 6.6E-09 66.1 11.4 89 12-121 23-111 (932)
176 KOG4507 Uncharacterized conser 97.7 0.00013 2.9E-09 66.3 8.0 131 10-162 619-752 (886)
177 KOG3785 Uncharacterized conser 97.7 0.00017 3.6E-09 62.5 7.9 103 8-121 67-219 (557)
178 PF13181 TPR_8: Tetratricopept 97.7 6.7E-05 1.5E-09 42.1 3.8 34 32-75 1-34 (34)
179 KOG4648 Uncharacterized conser 97.7 7.9E-05 1.7E-09 64.2 5.8 87 36-143 101-208 (536)
180 KOG2376 Signal recognition par 97.7 0.00091 2E-08 60.7 12.7 130 7-150 21-191 (652)
181 KOG4555 TPR repeat-containing 97.7 0.00027 5.9E-09 53.4 7.9 87 34-150 45-131 (175)
182 COG4785 NlpI Lipoprotein NlpI, 97.6 0.0003 6.6E-09 57.3 7.9 69 32-121 65-133 (297)
183 KOG1130 Predicted G-alpha GTPa 97.6 0.00011 2.3E-09 64.7 4.8 124 7-150 104-251 (639)
184 PF08424 NRDE-2: NRDE-2, neces 97.5 0.0089 1.9E-07 50.8 16.2 92 19-121 6-99 (321)
185 PLN03077 Protein ECB2; Provisi 97.5 0.0018 4E-08 61.4 12.8 127 8-150 534-707 (857)
186 PF13176 TPR_7: Tetratricopept 97.5 0.00023 5E-09 41.0 4.2 32 78-120 1-34 (36)
187 KOG4234 TPR repeat-containing 97.5 0.00084 1.8E-08 54.1 8.5 66 35-121 98-168 (271)
188 smart00028 TPR Tetratricopepti 97.5 0.0002 4.2E-09 37.7 3.5 33 77-120 2-34 (34)
189 PF03704 BTAD: Bacterial trans 97.5 0.0013 2.9E-08 48.8 9.1 82 12-114 20-123 (146)
190 PF13174 TPR_6: Tetratricopept 97.4 0.00025 5.4E-09 39.2 3.9 33 77-120 1-33 (33)
191 PF14561 TPR_20: Tetratricopep 97.4 0.0006 1.3E-08 47.7 6.6 52 59-121 5-56 (90)
192 COG3071 HemY Uncharacterized e 97.4 0.0013 2.9E-08 57.1 9.6 82 12-115 308-389 (400)
193 COG3118 Thioredoxin domain-con 97.4 0.0026 5.5E-08 53.6 10.9 102 9-121 145-270 (304)
194 PF12569 NARP1: NMDA receptor- 97.4 0.001 2.2E-08 60.3 9.0 67 34-121 196-262 (517)
195 COG4105 ComL DNA uptake lipopr 97.4 0.0051 1.1E-07 50.8 12.3 98 11-121 47-150 (254)
196 PF05843 Suf: Suppressor of fo 97.4 0.0049 1.1E-07 51.4 12.4 92 9-121 12-104 (280)
197 KOG3081 Vesicle coat complex C 97.3 0.0047 1E-07 51.5 11.2 92 13-124 188-279 (299)
198 PF04184 ST7: ST7 protein; In 97.3 0.0054 1.2E-07 55.0 12.3 125 4-139 213-385 (539)
199 PLN03081 pentatricopeptide (PP 97.3 0.003 6.6E-08 58.6 11.2 128 8-150 370-544 (697)
200 KOG4642 Chaperone-dependent E3 97.3 0.0012 2.7E-08 54.2 7.4 84 57-151 25-114 (284)
201 PLN03081 pentatricopeptide (PP 97.3 0.0014 3.1E-08 60.8 8.7 86 8-116 472-557 (697)
202 KOG0551 Hsp90 co-chaperone CNS 97.2 0.0017 3.7E-08 55.6 8.4 90 10-120 93-186 (390)
203 smart00028 TPR Tetratricopepti 97.2 0.00054 1.2E-08 35.8 3.6 33 33-75 2-34 (34)
204 PF14561 TPR_20: Tetratricopep 97.2 0.0033 7.1E-08 43.9 8.3 64 17-90 7-72 (90)
205 COG3071 HemY Uncharacterized e 97.2 0.0058 1.3E-07 53.2 11.4 91 7-121 272-362 (400)
206 PF13174 TPR_6: Tetratricopept 97.2 0.00077 1.7E-08 37.1 4.2 33 33-75 1-33 (33)
207 KOG1130 Predicted G-alpha GTPa 97.2 0.0053 1.1E-07 54.3 11.0 110 11-150 248-371 (639)
208 COG4700 Uncharacterized protei 97.2 0.011 2.4E-07 47.3 11.7 107 9-150 100-209 (251)
209 KOG3364 Membrane protein invol 97.1 0.011 2.3E-07 44.7 10.5 75 29-121 29-105 (149)
210 PF14938 SNAP: Soluble NSF att 97.1 0.0016 3.5E-08 54.1 6.5 49 57-116 89-144 (282)
211 PF14938 SNAP: Soluble NSF att 97.0 0.0049 1.1E-07 51.2 9.1 93 8-121 124-230 (282)
212 KOG2396 HAT (Half-A-TPR) repea 97.0 0.01 2.2E-07 53.3 11.3 86 16-121 89-174 (568)
213 PF04184 ST7: ST7 protein; In 97.0 0.0093 2E-07 53.5 11.0 92 13-120 183-292 (539)
214 PLN03218 maturation of RBCL 1; 96.9 0.065 1.4E-06 52.6 17.1 85 9-115 483-570 (1060)
215 PF14853 Fis1_TPR_C: Fis1 C-te 96.9 0.0048 1E-07 39.0 6.1 37 77-124 2-38 (53)
216 PF13281 DUF4071: Domain of un 96.9 0.022 4.8E-07 49.6 12.2 102 6-121 155-260 (374)
217 COG4105 ComL DNA uptake lipopr 96.9 0.014 3E-07 48.3 10.1 70 31-121 33-105 (254)
218 PLN03077 Protein ECB2; Provisi 96.8 0.0095 2.1E-07 56.5 10.3 53 58-121 673-729 (857)
219 PLN03218 maturation of RBCL 1; 96.8 0.046 1E-06 53.6 15.1 51 59-120 596-649 (1060)
220 PF13176 TPR_7: Tetratricopept 96.8 0.0021 4.4E-08 37.0 3.6 32 34-75 1-34 (36)
221 PF10300 DUF3808: Protein of u 96.8 0.0087 1.9E-07 53.5 9.3 89 12-121 247-339 (468)
222 PF04781 DUF627: Protein of un 96.8 0.015 3.2E-07 42.3 8.7 99 7-116 5-107 (111)
223 KOG3824 Huntingtin interacting 96.8 0.0042 9E-08 53.1 6.7 52 59-121 133-184 (472)
224 KOG2376 Signal recognition par 96.8 0.013 2.7E-07 53.5 10.0 83 10-116 91-204 (652)
225 KOG2796 Uncharacterized conser 96.8 0.014 3E-07 49.0 9.6 100 11-121 190-320 (366)
226 KOG3081 Vesicle coat complex C 96.8 0.034 7.5E-07 46.5 11.8 111 8-150 147-257 (299)
227 KOG3824 Huntingtin interacting 96.7 0.0033 7.1E-08 53.7 5.6 69 7-85 125-193 (472)
228 PRK10941 hypothetical protein; 96.7 0.015 3.2E-07 48.6 9.4 66 35-121 184-249 (269)
229 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0088 1.9E-07 37.8 6.1 42 33-84 2-43 (53)
230 KOG0376 Serine-threonine phosp 96.7 0.0042 9.2E-08 55.2 6.1 81 58-149 20-121 (476)
231 KOG4340 Uncharacterized conser 96.6 0.064 1.4E-06 45.9 12.3 71 10-90 22-92 (459)
232 PF13281 DUF4071: Domain of un 96.5 0.036 7.7E-07 48.4 10.8 109 11-121 195-339 (374)
233 KOG0545 Aryl-hydrocarbon recep 96.5 0.021 4.5E-07 47.5 8.7 69 32-121 178-264 (329)
234 KOG4340 Uncharacterized conser 96.5 0.02 4.2E-07 49.0 8.6 74 22-116 132-207 (459)
235 PRK10941 hypothetical protein; 96.5 0.017 3.8E-07 48.1 8.2 69 6-84 189-257 (269)
236 COG4976 Predicted methyltransf 96.4 0.0051 1.1E-07 50.5 4.5 52 59-121 12-63 (287)
237 PF03704 BTAD: Bacterial trans 96.4 0.018 3.9E-07 42.6 7.2 53 8-70 72-124 (146)
238 KOG1941 Acetylcholine receptor 96.4 0.021 4.6E-07 49.8 8.3 91 33-153 123-225 (518)
239 PF13374 TPR_10: Tetratricopep 96.3 0.011 2.5E-07 33.9 4.7 30 76-116 2-31 (42)
240 PF12968 DUF3856: Domain of Un 96.3 0.068 1.5E-06 39.8 9.7 90 12-115 23-128 (144)
241 KOG2053 Mitochondrial inherita 96.3 0.076 1.6E-06 50.5 12.2 92 9-122 54-145 (932)
242 KOG1310 WD40 repeat protein [G 96.2 0.039 8.4E-07 50.2 9.4 91 13-121 389-479 (758)
243 PRK04841 transcriptional regul 96.1 0.038 8.3E-07 52.3 9.7 87 9-116 463-560 (903)
244 KOG2796 Uncharacterized conser 96.1 0.076 1.7E-06 44.7 10.0 110 36-166 181-332 (366)
245 PF05843 Suf: Suppressor of fo 96.0 0.094 2E-06 43.6 10.2 92 11-123 49-143 (280)
246 COG4976 Predicted methyltransf 96.0 0.011 2.4E-07 48.6 4.4 57 12-78 9-65 (287)
247 COG3118 Thioredoxin domain-con 95.9 0.11 2.5E-06 43.8 10.5 98 31-150 133-252 (304)
248 KOG2471 TPR repeat-containing 95.9 0.016 3.6E-07 52.1 5.7 86 11-117 253-365 (696)
249 KOG1915 Cell cycle control pro 95.9 0.08 1.7E-06 47.7 9.6 93 10-121 449-541 (677)
250 KOG2610 Uncharacterized conser 95.7 0.069 1.5E-06 46.3 8.5 89 12-121 117-209 (491)
251 KOG1308 Hsp70-interacting prot 95.7 0.0025 5.5E-08 54.7 -0.1 53 58-121 130-182 (377)
252 PRK04841 transcriptional regul 95.6 0.071 1.5E-06 50.5 9.0 90 11-121 666-765 (903)
253 PF09986 DUF2225: Uncharacteri 95.6 0.14 3.1E-06 41.2 9.5 97 7-117 86-195 (214)
254 PF09613 HrpB1_HrpK: Bacterial 95.5 0.14 3E-06 39.6 8.8 70 11-90 23-92 (160)
255 PF04781 DUF627: Protein of un 95.4 0.072 1.6E-06 38.8 6.5 74 38-121 2-78 (111)
256 COG2976 Uncharacterized protei 95.4 0.17 3.6E-06 40.6 9.1 86 12-120 103-192 (207)
257 PF13374 TPR_10: Tetratricopep 95.4 0.034 7.4E-07 31.8 4.1 30 32-71 2-31 (42)
258 KOG0551 Hsp90 co-chaperone CNS 95.3 0.048 1E-06 46.9 6.2 69 32-121 81-153 (390)
259 KOG0530 Protein farnesyltransf 95.3 1.4 3.1E-05 37.0 14.4 125 13-146 58-233 (318)
260 KOG4507 Uncharacterized conser 95.2 0.027 6E-07 51.7 4.4 92 9-121 224-317 (886)
261 COG5191 Uncharacterized conser 95.1 0.039 8.5E-07 47.3 4.9 80 21-121 96-176 (435)
262 KOG1915 Cell cycle control pro 95.1 0.25 5.4E-06 44.6 10.0 92 9-121 84-175 (677)
263 KOG1550 Extracellular protein 95.0 0.45 9.7E-06 43.5 12.0 139 14-170 228-373 (552)
264 KOG2610 Uncharacterized conser 95.0 0.19 4.2E-06 43.6 8.8 78 3-90 142-223 (491)
265 PF07720 TPR_3: Tetratricopept 94.8 0.12 2.7E-06 29.9 5.1 34 76-120 1-36 (36)
266 PF08424 NRDE-2: NRDE-2, neces 94.6 0.96 2.1E-05 38.4 12.3 89 9-116 42-131 (321)
267 COG3914 Spy Predicted O-linked 94.5 0.27 5.8E-06 45.1 9.0 89 12-121 81-176 (620)
268 KOG2471 TPR repeat-containing 94.3 0.19 4.1E-06 45.5 7.5 69 10-88 295-381 (696)
269 KOG1070 rRNA processing protei 94.3 0.49 1.1E-05 47.4 10.7 92 7-119 1539-1632(1710)
270 PF10300 DUF3808: Protein of u 94.2 0.31 6.8E-06 43.6 8.8 96 9-118 278-378 (468)
271 KOG0529 Protein geranylgeranyl 94.1 1 2.2E-05 39.8 11.3 107 11-126 42-153 (421)
272 PF10373 EST1_DNA_bind: Est1 D 93.9 0.15 3.3E-06 41.3 5.7 45 61-116 1-45 (278)
273 PF02259 FAT: FAT domain; Int 93.7 1.6 3.4E-05 36.3 11.8 100 8-121 156-292 (352)
274 COG3914 Spy Predicted O-linked 93.7 0.8 1.7E-05 42.1 10.3 85 17-121 50-136 (620)
275 COG0790 FOG: TPR repeat, SEL1 93.6 3.4 7.3E-05 33.8 14.1 91 10-117 53-143 (292)
276 KOG0530 Protein farnesyltransf 93.5 0.82 1.8E-05 38.5 9.3 52 59-120 60-111 (318)
277 KOG1941 Acetylcholine receptor 93.5 0.53 1.2E-05 41.3 8.4 90 6-116 170-275 (518)
278 COG3629 DnrI DNA-binding trans 93.4 0.81 1.8E-05 38.5 9.3 62 34-116 155-216 (280)
279 PF02259 FAT: FAT domain; Int 93.4 0.35 7.7E-06 40.3 7.2 84 36-119 249-341 (352)
280 COG2912 Uncharacterized conser 93.3 0.46 9.9E-06 39.7 7.5 52 59-121 198-249 (269)
281 PF11207 DUF2989: Protein of u 93.2 0.77 1.7E-05 36.9 8.5 55 30-106 139-197 (203)
282 PRK13184 pknD serine/threonine 93.2 1.6 3.5E-05 42.5 12.1 96 11-121 488-586 (932)
283 PF12862 Apc5: Anaphase-promot 93.2 0.39 8.5E-06 33.3 6.1 49 59-118 15-72 (94)
284 KOG4814 Uncharacterized conser 93.1 3.1 6.7E-05 39.0 13.1 91 7-118 363-459 (872)
285 KOG1586 Protein required for f 92.9 2 4.4E-05 35.6 10.6 99 13-121 29-148 (288)
286 PF10579 Rapsyn_N: Rapsyn N-te 92.9 1 2.2E-05 30.9 7.5 47 59-116 23-72 (80)
287 KOG2396 HAT (Half-A-TPR) repea 92.9 0.44 9.6E-06 43.1 7.3 59 14-81 121-179 (568)
288 PF07720 TPR_3: Tetratricopept 92.9 0.36 7.7E-06 27.9 4.6 34 32-75 1-36 (36)
289 PF12862 Apc5: Anaphase-promot 92.8 0.37 8.1E-06 33.4 5.5 56 9-74 9-73 (94)
290 TIGR02561 HrpB1_HrpK type III 92.6 0.84 1.8E-05 35.0 7.6 70 11-90 23-92 (153)
291 PF10373 EST1_DNA_bind: Est1 D 92.6 0.51 1.1E-05 38.2 7.0 62 17-88 1-62 (278)
292 PF07721 TPR_4: Tetratricopept 92.3 0.2 4.3E-06 26.5 2.8 25 77-112 2-26 (26)
293 PF04910 Tcf25: Transcriptiona 91.8 8.1 0.00017 33.5 15.4 97 11-121 14-138 (360)
294 COG2912 Uncharacterized conser 91.8 1 2.2E-05 37.7 7.8 68 7-84 190-257 (269)
295 COG3947 Response regulator con 91.5 0.78 1.7E-05 39.1 6.8 57 35-112 282-338 (361)
296 KOG0529 Protein geranylgeranyl 91.5 2.6 5.6E-05 37.3 10.2 97 10-121 87-183 (421)
297 COG3898 Uncharacterized membra 91.5 8.8 0.00019 34.2 13.4 103 8-121 164-297 (531)
298 KOG3617 WD40 and TPR repeat-co 90.7 1.9 4E-05 41.7 9.0 84 56-150 872-983 (1416)
299 COG5191 Uncharacterized conser 90.5 0.3 6.5E-06 42.0 3.5 61 11-81 120-181 (435)
300 COG4455 ImpE Protein of avirul 90.5 3.3 7.2E-05 34.1 9.3 53 58-121 17-69 (273)
301 KOG1585 Protein required for f 90.5 4.6 9.9E-05 33.8 10.2 94 9-121 42-144 (308)
302 PF10516 SHNi-TPR: SHNi-TPR; 90.3 0.5 1.1E-05 27.7 3.4 29 33-71 2-30 (38)
303 PF10516 SHNi-TPR: SHNi-TPR; 90.3 0.56 1.2E-05 27.5 3.5 30 77-117 2-31 (38)
304 KOG3364 Membrane protein invol 90.2 1.3 2.8E-05 33.6 6.3 59 13-81 50-110 (149)
305 KOG2047 mRNA splicing factor [ 90.1 2.9 6.4E-05 39.2 9.6 92 9-119 488-582 (835)
306 PF09613 HrpB1_HrpK: Bacterial 90.1 4.5 9.7E-05 31.3 9.4 52 59-121 27-78 (160)
307 KOG2047 mRNA splicing factor [ 89.8 8.7 0.00019 36.2 12.4 92 14-118 42-133 (835)
308 KOG1586 Protein required for f 89.1 12 0.00026 31.2 11.9 55 56-121 168-229 (288)
309 KOG1070 rRNA processing protei 88.5 4.7 0.0001 40.9 10.3 96 13-129 1579-1680(1710)
310 KOG1914 mRNA cleavage and poly 88.5 2.8 6.2E-05 38.5 8.3 74 21-116 9-82 (656)
311 PF07721 TPR_4: Tetratricopept 88.4 0.52 1.1E-05 24.8 2.3 26 32-67 1-26 (26)
312 KOG3617 WD40 and TPR repeat-co 88.4 3.4 7.4E-05 40.0 9.0 66 29-115 909-995 (1416)
313 smart00386 HAT HAT (Half-A-TPR 88.3 1.4 3E-05 23.2 4.1 27 58-84 3-29 (33)
314 KOG0546 HSP90 co-chaperone CPR 87.2 0.52 1.1E-05 40.9 2.8 76 34-130 277-352 (372)
315 COG0790 FOG: TPR repeat, SEL1 87.2 15 0.00032 30.0 14.1 92 14-117 93-185 (292)
316 PF10602 RPN7: 26S proteasome 86.9 6.3 0.00014 30.6 8.6 87 7-114 45-140 (177)
317 COG3629 DnrI DNA-binding trans 86.4 8.2 0.00018 32.5 9.5 83 7-121 162-244 (280)
318 KOG2300 Uncharacterized conser 86.2 8.6 0.00019 35.1 9.9 83 57-150 24-139 (629)
319 smart00386 HAT HAT (Half-A-TPR 85.7 2 4.4E-05 22.5 3.8 30 12-41 1-30 (33)
320 PF12753 Nro1: Nuclear pore co 85.3 2.1 4.6E-05 37.7 5.6 60 10-71 330-391 (404)
321 PF09986 DUF2225: Uncharacteri 85.0 5.7 0.00012 31.9 7.6 55 7-71 134-194 (214)
322 PF11207 DUF2989: Protein of u 85.0 18 0.0004 29.0 12.1 71 59-150 123-194 (203)
323 smart00299 CLH Clathrin heavy 84.6 13 0.00028 26.9 10.3 112 8-147 17-138 (140)
324 PF12968 DUF3856: Domain of Un 84.6 5.9 0.00013 29.6 6.8 54 7-70 64-128 (144)
325 KOG0890 Protein kinase of the 84.3 14 0.00031 39.3 11.5 142 2-170 1637-1834(2382)
326 PF08631 SPO22: Meiosis protei 84.1 15 0.00032 30.4 10.0 101 10-121 5-121 (278)
327 PF11846 DUF3366: Domain of un 84.0 6.9 0.00015 30.3 7.6 55 55-121 124-178 (193)
328 KOG1585 Protein required for f 83.9 9.5 0.00021 32.0 8.5 95 6-112 66-175 (308)
329 KOG1310 WD40 repeat protein [G 83.3 1.4 3E-05 40.5 3.7 54 14-77 427-480 (758)
330 KOG1550 Extracellular protein 82.9 12 0.00026 34.2 9.7 90 13-117 264-358 (552)
331 KOG3807 Predicted membrane pro 82.4 27 0.0006 30.7 11.0 27 14-40 200-226 (556)
332 PF15015 NYD-SP12_N: Spermatog 82.2 10 0.00022 34.1 8.5 59 34-113 230-288 (569)
333 PF04910 Tcf25: Transcriptiona 82.1 10 0.00022 32.9 8.5 103 9-121 114-227 (360)
334 PF14863 Alkyl_sulf_dimr: Alky 81.8 5 0.00011 30.3 5.7 51 30-90 68-118 (141)
335 PF07079 DUF1347: Protein of u 81.6 4.9 0.00011 36.3 6.4 61 55-130 475-539 (549)
336 PF09797 NatB_MDM20: N-acetylt 81.5 5.4 0.00012 34.2 6.6 47 55-112 196-242 (365)
337 TIGR03504 FimV_Cterm FimV C-te 81.4 3.1 6.6E-05 25.1 3.6 26 35-70 2-27 (44)
338 PF04212 MIT: MIT (microtubule 81.1 6 0.00013 25.6 5.3 14 59-72 3-16 (69)
339 PRK15180 Vi polysaccharide bio 80.3 13 0.00028 34.2 8.6 110 12-121 303-425 (831)
340 TIGR03504 FimV_Cterm FimV C-te 80.3 6.8 0.00015 23.6 4.9 31 79-121 2-32 (44)
341 PRK15490 Vi polysaccharide bio 79.9 17 0.00038 33.7 9.5 85 9-119 19-103 (578)
342 PHA02537 M terminase endonucle 79.3 3.3 7.2E-05 33.8 4.3 99 12-121 97-212 (230)
343 PF04190 DUF410: Protein of un 78.9 25 0.00054 29.0 9.5 95 10-116 69-170 (260)
344 KOG4014 Uncharacterized conser 78.7 20 0.00044 28.9 8.4 98 13-123 50-148 (248)
345 cd02677 MIT_SNX15 MIT: domain 78.7 3.5 7.7E-05 27.7 3.6 17 58-74 3-19 (75)
346 KOG4814 Uncharacterized conser 78.6 20 0.00043 33.9 9.4 52 59-121 371-428 (872)
347 cd02682 MIT_AAA_Arch MIT: doma 78.4 9.7 0.00021 25.7 5.7 49 35-86 9-57 (75)
348 TIGR02561 HrpB1_HrpK type III 78.3 23 0.0005 27.2 8.3 52 59-121 27-78 (153)
349 PF12753 Nro1: Nuclear pore co 77.7 3.1 6.7E-05 36.7 3.9 59 55-115 331-390 (404)
350 PF10255 Paf67: RNA polymerase 77.6 4 8.6E-05 36.1 4.6 58 36-115 126-192 (404)
351 PRK13184 pknD serine/threonine 77.4 20 0.00044 35.1 9.6 93 12-121 533-625 (932)
352 PF11846 DUF3366: Domain of un 77.1 13 0.00028 28.8 7.0 51 14-75 127-177 (193)
353 smart00671 SEL1 Sel1-like repe 76.2 7.1 0.00015 21.1 4.0 34 77-117 2-35 (36)
354 PF08238 Sel1: Sel1 repeat; I 76.0 5.1 0.00011 22.2 3.4 36 76-117 1-38 (39)
355 PF10579 Rapsyn_N: Rapsyn N-te 76.0 20 0.00044 24.5 6.7 38 11-48 19-59 (80)
356 COG2976 Uncharacterized protei 75.3 9 0.00019 30.8 5.6 56 10-77 138-194 (207)
357 cd02679 MIT_spastin MIT: domai 74.7 8.4 0.00018 26.2 4.6 16 58-73 5-20 (79)
358 PF13226 DUF4034: Domain of un 74.1 52 0.0011 27.7 12.8 149 17-168 62-261 (277)
359 cd02681 MIT_calpain7_1 MIT: do 74.0 10 0.00022 25.6 4.8 31 59-115 4-34 (76)
360 PF10602 RPN7: 26S proteasome 73.1 31 0.00068 26.7 8.2 65 32-117 36-103 (177)
361 cd02683 MIT_1 MIT: domain cont 72.9 10 0.00022 25.5 4.7 44 59-121 4-47 (77)
362 cd02656 MIT MIT: domain contai 72.5 8.7 0.00019 25.2 4.3 20 100-119 26-45 (75)
363 smart00745 MIT Microtubule Int 72.4 8.7 0.00019 25.2 4.3 44 58-120 5-48 (77)
364 cd02678 MIT_VPS4 MIT: domain c 72.1 13 0.00028 24.6 5.0 44 58-120 3-46 (75)
365 PF01239 PPTA: Protein prenylt 71.7 13 0.00028 20.0 4.2 28 61-88 2-29 (31)
366 PF08631 SPO22: Meiosis protei 71.6 12 0.00027 30.8 5.9 57 56-116 7-65 (278)
367 COG3947 Response regulator con 71.5 9.9 0.00021 32.6 5.2 51 7-67 288-338 (361)
368 KOG1258 mRNA processing protei 70.6 92 0.002 29.0 13.3 81 10-90 309-414 (577)
369 cd02680 MIT_calpain7_2 MIT: do 70.5 10 0.00022 25.6 4.2 15 102-116 21-35 (75)
370 PF12854 PPR_1: PPR repeat 68.1 13 0.00028 20.6 3.7 29 29-67 4-32 (34)
371 KOG3807 Predicted membrane pro 67.5 33 0.00071 30.2 7.7 78 59-150 201-291 (556)
372 PF07079 DUF1347: Protein of u 66.7 23 0.00049 32.2 6.7 47 11-68 475-521 (549)
373 KOG2581 26S proteasome regulat 66.6 15 0.00032 32.9 5.5 53 58-121 225-281 (493)
374 PF04053 Coatomer_WDAD: Coatom 66.3 21 0.00045 32.0 6.5 31 72-113 343-373 (443)
375 PF14852 Fis1_TPR_N: Fis1 N-te 66.2 10 0.00022 21.6 3.1 35 32-73 1-35 (35)
376 PF12854 PPR_1: PPR repeat 65.8 18 0.00039 20.0 4.0 27 75-112 6-32 (34)
377 PF13226 DUF4034: Domain of un 64.8 33 0.00072 28.8 7.1 61 61-121 62-133 (277)
378 KOG3783 Uncharacterized conser 64.6 23 0.00049 32.5 6.4 85 15-120 250-336 (546)
379 PF00244 14-3-3: 14-3-3 protei 63.1 44 0.00095 27.1 7.4 67 38-115 122-197 (236)
380 PF09205 DUF1955: Domain of un 62.9 50 0.0011 25.2 7.0 42 64-116 108-149 (161)
381 COG5536 BET4 Protein prenyltra 62.9 26 0.00057 29.8 6.0 145 13-170 47-197 (328)
382 COG4455 ImpE Protein of avirul 62.5 19 0.00041 29.8 5.0 57 11-77 14-70 (273)
383 PF09797 NatB_MDM20: N-acetylt 62.3 28 0.00061 29.8 6.5 48 10-67 195-242 (365)
384 KOG3783 Uncharacterized conser 61.8 54 0.0012 30.2 8.2 67 35-121 452-525 (546)
385 COG3898 Uncharacterized membra 61.8 78 0.0017 28.5 9.0 74 21-116 318-392 (531)
386 cd02684 MIT_2 MIT: domain cont 61.5 25 0.00054 23.4 4.8 14 59-72 4-17 (75)
387 COG2909 MalT ATP-dependent tra 60.6 70 0.0015 31.2 9.1 90 11-121 428-531 (894)
388 PF10255 Paf67: RNA polymerase 59.8 11 0.00024 33.4 3.5 50 11-70 135-192 (404)
389 PF04053 Coatomer_WDAD: Coatom 59.4 57 0.0012 29.2 8.0 71 28-127 343-413 (443)
390 PF01535 PPR: PPR repeat; Int 59.3 20 0.00042 18.3 3.3 27 79-116 3-29 (31)
391 KOG0985 Vesicle coat protein c 58.7 88 0.0019 31.6 9.4 61 29-115 1101-1161(1666)
392 PF02184 HAT: HAT (Half-A-TPR) 58.7 22 0.00047 20.0 3.4 27 13-40 2-28 (32)
393 KOG0546 HSP90 co-chaperone CPR 58.6 6.5 0.00014 34.2 1.9 66 13-88 290-355 (372)
394 cd02682 MIT_AAA_Arch MIT: doma 58.5 22 0.00049 23.9 4.1 44 59-121 4-47 (75)
395 PF09670 Cas_Cas02710: CRISPR- 58.4 1.3E+02 0.0027 26.3 10.2 54 10-71 143-198 (379)
396 PF10345 Cohesin_load: Cohesin 57.6 1.3E+02 0.0029 27.7 10.4 85 13-119 36-131 (608)
397 PF05053 Menin: Menin; InterP 55.8 46 0.00099 30.9 6.8 81 31-130 276-368 (618)
398 KOG1464 COP9 signalosome, subu 55.6 39 0.00085 29.0 5.9 46 58-114 43-92 (440)
399 PF13041 PPR_2: PPR repeat fam 55.5 39 0.00084 19.8 4.6 40 76-126 3-44 (50)
400 PF14863 Alkyl_sulf_dimr: Alky 55.1 50 0.0011 24.8 6.0 38 11-48 83-120 (141)
401 PF09205 DUF1955: Domain of un 54.9 52 0.0011 25.2 5.9 50 11-70 99-148 (161)
402 COG4941 Predicted RNA polymera 54.5 56 0.0012 28.7 6.8 52 59-121 346-399 (415)
403 PF10345 Cohesin_load: Cohesin 54.2 1.8E+02 0.0039 26.8 14.0 92 9-121 319-446 (608)
404 KOG0128 RNA-binding protein SA 53.4 1.4E+02 0.003 29.1 9.7 91 13-115 128-218 (881)
405 KOG2908 26S proteasome regulat 51.8 1.5E+02 0.0034 25.9 9.0 79 7-88 84-168 (380)
406 PF15015 NYD-SP12_N: Spermatog 51.1 48 0.001 30.0 6.0 31 80-121 232-262 (569)
407 smart00101 14_3_3 14-3-3 homol 49.1 1.4E+02 0.003 24.6 8.2 69 37-115 123-199 (244)
408 KOG0128 RNA-binding protein SA 47.7 1.6E+02 0.0034 28.8 9.1 93 5-115 86-178 (881)
409 TIGR00756 PPR pentatricopeptid 46.6 41 0.0009 17.2 4.0 27 79-116 3-29 (35)
410 KOG1839 Uncharacterized protei 46.3 48 0.001 33.5 5.8 90 8-118 983-1088(1236)
411 PF04212 MIT: MIT (microtubule 44.7 57 0.0012 20.8 4.3 15 59-73 29-43 (69)
412 KOG4014 Uncharacterized conser 44.5 1.7E+02 0.0037 23.7 8.3 99 13-118 88-199 (248)
413 PF02064 MAS20: MAS20 protein 43.3 50 0.0011 24.3 4.3 33 80-123 67-99 (121)
414 KOG0985 Vesicle coat protein c 41.8 1.2E+02 0.0025 30.8 7.4 76 10-90 1232-1327(1666)
415 PRK15180 Vi polysaccharide bio 41.8 1.6E+02 0.0034 27.4 7.9 94 12-117 712-806 (831)
416 KOG0276 Vesicle coat complex C 41.7 87 0.0019 29.6 6.3 79 9-117 618-696 (794)
417 KOG2997 F-box protein FBX9 [Ge 41.6 42 0.00091 29.1 4.1 37 59-121 17-53 (366)
418 KOG2041 WD40 repeat protein [G 41.1 93 0.002 30.1 6.5 61 77-148 797-866 (1189)
419 PRK15338 type III secretion sy 40.9 1.5E+02 0.0033 26.0 7.5 87 63-150 110-217 (372)
420 cd02683 MIT_1 MIT: domain cont 40.4 63 0.0014 21.6 4.1 39 36-77 10-48 (77)
421 cd02681 MIT_calpain7_1 MIT: do 39.8 65 0.0014 21.6 4.1 26 36-71 10-35 (76)
422 PF11817 Foie-gras_1: Foie gra 38.4 1.7E+02 0.0036 23.7 7.1 79 13-112 153-243 (247)
423 PF00244 14-3-3: 14-3-3 protei 38.3 84 0.0018 25.5 5.3 52 9-70 137-197 (236)
424 cd02679 MIT_spastin MIT: domai 37.5 60 0.0013 22.0 3.6 18 12-29 3-20 (79)
425 KOG1914 mRNA cleavage and poly 36.2 3.7E+02 0.008 25.2 9.8 47 59-116 418-464 (656)
426 PF11817 Foie-gras_1: Foie gra 35.6 1E+02 0.0023 24.9 5.5 49 59-118 155-209 (247)
427 KOG2997 F-box protein FBX9 [Ge 35.4 54 0.0012 28.4 3.8 39 102-140 15-59 (366)
428 KOG4459 Membrane-associated pr 35.3 68 0.0015 29.0 4.6 70 5-90 140-209 (471)
429 COG1747 Uncharacterized N-term 35.3 2.2E+02 0.0047 26.7 7.7 64 30-116 97-160 (711)
430 smart00299 CLH Clathrin heavy 33.6 1.3E+02 0.0028 21.5 5.3 42 58-111 23-64 (140)
431 PF10952 DUF2753: Protein of u 32.8 2.1E+02 0.0046 21.5 6.3 59 35-114 4-77 (140)
432 KOG4279 Serine/threonine prote 31.7 1.2E+02 0.0025 29.7 5.6 45 3-48 292-336 (1226)
433 KOG4056 Translocase of outer m 31.3 2.3E+02 0.0051 21.4 7.9 51 80-143 85-135 (143)
434 cd00280 TRFH Telomeric Repeat 30.7 1.4E+02 0.003 23.9 5.2 38 40-88 119-156 (200)
435 PRK15490 Vi polysaccharide bio 30.5 2.2E+02 0.0047 26.7 7.1 71 35-123 8-78 (578)
436 PF08311 Mad3_BUB1_I: Mad3/BUB 30.2 2.1E+02 0.0046 20.7 6.1 44 16-69 81-126 (126)
437 PF13812 PPR_3: Pentatricopept 30.1 87 0.0019 16.1 4.4 28 78-116 3-30 (34)
438 PF08311 Mad3_BUB1_I: Mad3/BUB 29.6 2.2E+02 0.0048 20.6 8.4 45 59-114 80-126 (126)
439 PF02064 MAS20: MAS20 protein 29.5 92 0.002 22.9 3.8 33 36-78 67-99 (121)
440 KOG0276 Vesicle coat complex C 29.1 3.1E+02 0.0068 26.1 7.8 34 28-71 662-695 (794)
441 COG5107 RNA14 Pre-mRNA 3'-end 28.8 2.7E+02 0.0059 25.7 7.2 75 20-115 30-104 (660)
442 COG0803 LraI ABC-type metal io 28.4 1.6E+02 0.0035 24.6 5.6 60 30-118 131-190 (303)
443 COG5536 BET4 Protein prenyltra 28.1 2.8E+02 0.0061 23.8 6.8 69 13-85 165-236 (328)
444 KOG1811 Predicted Zn2+-binding 28.0 2E+02 0.0043 27.6 6.3 46 30-85 585-631 (1141)
445 PRK15326 type III secretion sy 27.3 2.1E+02 0.0045 19.6 6.6 55 12-69 21-75 (80)
446 TIGR02710 CRISPR-associated pr 26.7 4.5E+02 0.0097 23.2 8.8 49 11-67 143-196 (380)
447 PF15297 CKAP2_C: Cytoskeleton 26.6 2.4E+02 0.0052 24.7 6.3 50 59-119 120-172 (353)
448 KOG2300 Uncharacterized conser 26.4 5.3E+02 0.012 24.0 13.2 77 12-109 61-149 (629)
449 KOG1258 mRNA processing protei 26.3 5.5E+02 0.012 24.1 12.7 64 15-88 62-125 (577)
450 smart00101 14_3_3 14-3-3 homol 25.7 2E+02 0.0044 23.6 5.5 40 9-48 139-187 (244)
451 TIGR02996 rpt_mate_G_obs repea 25.3 1.6E+02 0.0034 17.6 3.6 30 19-48 3-32 (42)
452 COG4259 Uncharacterized protei 24.8 2.8E+02 0.006 20.1 6.8 54 63-127 58-112 (121)
453 KOG2581 26S proteasome regulat 24.4 1.5E+02 0.0032 26.8 4.7 36 31-76 246-281 (493)
454 KOG2041 WD40 repeat protein [G 24.4 3.9E+02 0.0085 26.1 7.6 37 65-112 841-877 (1189)
455 PF03039 IL12: Interleukin-12 23.4 1.5E+02 0.0033 24.0 4.3 64 97-171 128-203 (219)
456 COG0497 RecN ATPase involved i 23.4 2.1E+02 0.0045 26.7 5.6 38 7-44 213-253 (557)
457 KOG0890 Protein kinase of the 23.0 1E+03 0.022 26.5 10.8 94 11-121 1683-1789(2382)
458 KOG2422 Uncharacterized conser 21.8 6.9E+02 0.015 23.7 13.6 100 8-121 248-377 (665)
459 KOG4279 Serine/threonine prote 21.3 4.5E+02 0.0098 25.9 7.4 77 12-90 257-334 (1226)
460 PHA02537 M terminase endonucle 21.0 1.3E+02 0.0028 24.6 3.5 21 56-76 192-212 (230)
461 PF12309 KBP_C: KIF-1 binding 20.8 3.4E+02 0.0073 23.7 6.3 59 56-116 263-338 (371)
462 KOG0889 Histone acetyltransfer 20.1 3.2E+02 0.0068 31.2 6.8 92 9-115 2823-2914(3550)
463 PF12583 TPPII_N: Tripeptidyl 20.1 3.3E+02 0.0071 20.6 5.2 30 59-88 93-122 (139)
No 1
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=99.95 E-value=6.5e-28 Score=187.41 Aligned_cols=149 Identities=66% Similarity=1.017 Sum_probs=126.3
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|||+..|++|++.++..+..+|.|++++++||.+++++.+++++.+...++++|+..|++||.++|+.+++++++|++|.
T Consensus 1 ~~rl~~FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 1 FERLLFFEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhccccCCCCch
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSA 156 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~~~~~~~ 156 (174)
.+|+++|+..++.+.|++|..||++|+.++|+|..|+++|++..++|++|..+.+.+..|+..+++++.
T Consensus 81 s~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~kap~lh~e~~~~~~~~q~~~~~~~~ 149 (186)
T PF06552_consen 81 SLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAKAPELHMEIHKQGLGQQAMGGASSS 149 (186)
T ss_dssp HHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHTHHHHHHHHHHSSS-----------
T ss_pred HHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhHHHHHHHHHHHhhhhhccCCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999988776443
No 2
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.80 E-value=8.3e-19 Score=156.74 Aligned_cols=153 Identities=22% Similarity=0.231 Sum_probs=119.9
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCccc------------------------chhhhhhHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFES------------------------VSDSKKIINEAI 62 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~------------------------~~~~~~~~~eAi 62 (174)
-|..+|..-.|+..|++|+.++|+.++++++||++|.+++.|+. +.-.+|.++-||
T Consensus 227 ~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI 306 (966)
T KOG4626|consen 227 VFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAI 306 (966)
T ss_pred HHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHH
Confidence 36678899999999999999999999999999999999988864 222367789999
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------
Q 030634 63 SKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------- 121 (174)
Q Consensus 63 ~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------------- 121 (174)
.+|++||+++|+.++|+.|||+++-..| +..+|..||.+||.+.|+++
T Consensus 307 ~~Ykral~~~P~F~~Ay~NlanALkd~G-----------~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ 375 (966)
T KOG4626|consen 307 DTYKRALELQPNFPDAYNNLANALKDKG-----------SVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATR 375 (966)
T ss_pred HHHHHHHhcCCCchHHHhHHHHHHHhcc-----------chHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHH
Confidence 9999999999999999999999999988 88888888888888888877
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcccc-----------CCCCchhhHHHHHHHHHhhh
Q 030634 122 LYQKSLEVSTKAPELHMELHKHGINQQTL-----------GGGSSASSAQVNFCICVHQM 170 (174)
Q Consensus 122 ~y~~Al~l~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 170 (174)
.|+++|++.|+-..++.||+.+|-.||.+ -+.|-+++++.|.|..+--|
T Consensus 376 ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~ 435 (966)
T KOG4626|consen 376 LYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEM 435 (966)
T ss_pred HHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHh
Confidence 56666666666666666666666666665 33366666666666555433
No 3
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.78 E-value=8.8e-19 Score=156.57 Aligned_cols=151 Identities=19% Similarity=0.177 Sum_probs=111.5
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
+-+|+.+||...|.+|++.+|..+-+|.+||.++...|+. ..||..|++|+++||+.++||+|||++|..
T Consensus 195 ka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei----------~~aiq~y~eAvkldP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 195 KAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEI----------WLAIQHYEEAVKLDPNFLDAYINLGNVYKE 264 (966)
T ss_pred HhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchH----------HHHHHHHHHhhcCCCcchHHHhhHHHHHHH
Confidence 4577899999999999999999999999999999988887 999999999999999999999999999998
Q ss_pred CCC-------------Cccchh----------hhhcCHHHHHHHHHHHHHhCCCCH---------------------HHH
Q 030634 89 CGF-------------LTADLS----------EAKGDFDKASECFQRAVDEEPTNE---------------------LYQ 124 (174)
Q Consensus 89 lG~-------------~~~~~~----------~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~ 124 (174)
.+. ++|..- --.|..+-||.+|++||+++|+.+ +|.
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYn 344 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYN 344 (966)
T ss_pred HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHH
Confidence 882 111111 113445555555555555555554 566
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcccc-----------CCCCchhhHHHHHHHHHhh
Q 030634 125 KSLEVSTKAPELHMELHKHGINQQTL-----------GGGSSASSAQVNFCICVHQ 169 (174)
Q Consensus 125 ~Al~l~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~ 169 (174)
+||+++|..++...|||+++.+||-. ..-|.++.++.|+++.+.|
T Consensus 345 kaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kq 400 (966)
T KOG4626|consen 345 KALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQ 400 (966)
T ss_pred HHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHh
Confidence 66666666666666666666666655 1127777777777776654
No 4
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.69 E-value=4.9e-16 Score=117.44 Aligned_cols=97 Identities=14% Similarity=0.109 Sum_probs=90.6
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
.+-++|++++|+..+++++.++|.++.+|.++|.++..+|++ ++|+..|+++++++|+++.+++++|.++
T Consensus 33 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~y~~Al~l~p~~~~a~~~lg~~l 102 (144)
T PRK15359 33 ASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEY----------TTAINFYGHALMLDASHPEPVYQTGVCL 102 (144)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 346788999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~ 124 (174)
..+| ++++|+.+|+++++++|++..+.
T Consensus 103 ~~~g-----------~~~eAi~~~~~Al~~~p~~~~~~ 129 (144)
T PRK15359 103 KMMG-----------EPGLAREAFQTAIKMSYADASWS 129 (144)
T ss_pred HHcC-----------CHHHHHHHHHHHHHhCCCChHHH
Confidence 9999 99999999999999888877444
No 5
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.68 E-value=2.7e-16 Score=130.50 Aligned_cols=97 Identities=25% Similarity=0.379 Sum_probs=93.1
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
+.|.+|+..|.+||.++|+|+..|.+.+.+|.++|++ +.|++..+.||.+||....+|-.||.+|..+|
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~----------~~AVkDce~Al~iDp~yskay~RLG~A~~~~g- 163 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEY----------EDAVKDCESALSIDPHYSKAYGRLGLAYLALG- 163 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcch----------HHHHHHHHHHHhcChHHHHHHHHHHHHHHccC-
Confidence 4899999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhc
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV 129 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l 129 (174)
++++|++.|+|||+++|+++.|+..|++
T Consensus 164 ----------k~~~A~~aykKaLeldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 164 ----------KYEEAIEAYKKALELDPDNESYKSNLKI 191 (304)
T ss_pred ----------cHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence 9999999999999999999988777643
No 6
>PRK12370 invasion protein regulator; Provisional
Probab=99.67 E-value=4.5e-15 Score=133.81 Aligned_cols=148 Identities=12% Similarity=0.029 Sum_probs=125.2
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
..+++|+..++++++++|+++.++..+|.++..++.... .+..+.+++|+..+++|++++|+++.+|..+|.++...|
T Consensus 275 ~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~-~~~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g- 352 (553)
T PRK12370 275 YSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGI-FDKQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHS- 352 (553)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCC-cccchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcc-
Confidence 356899999999999999999999999999987766432 123456799999999999999999999999999999988
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
++++|+.+|++|++++|++. .++++++++|..+..+..++.+++.+|+.
T Consensus 353 ----------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~ 422 (553)
T PRK12370 353 ----------EYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGI 422 (553)
T ss_pred ----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCH
Confidence 99999999999999999987 67899999999988777777667777765
Q ss_pred ------------CCCCchhhHHHHHHHHHhhhc
Q 030634 151 ------------GGGSSASSAQVNFCICVHQMK 171 (174)
Q Consensus 151 ------------~~~~~~~~~~~~~~~~~~~~~ 171 (174)
...|....++.|++.++.+.|
T Consensus 423 eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 423 DDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred HHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence 113677788999999987655
No 7
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.66 E-value=2.5e-15 Score=125.73 Aligned_cols=94 Identities=23% Similarity=0.321 Sum_probs=90.9
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
-|.++|.+++|+..++++++++|+++.+|+++|.++...|++ ++|+..|+++++++|++..+|+++|.++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~Al~l~P~~~~a~~~lg~~l 142 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNF----------DAAYEAFDSVLELDPTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 367889999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
...| ++++|++.|+++++++|++.
T Consensus 143 ~~~g-----------~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 143 YYGG-----------RYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence 9999 99999999999999999986
No 8
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.66 E-value=2.6e-15 Score=136.41 Aligned_cols=121 Identities=16% Similarity=0.193 Sum_probs=108.5
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
-.+|++++|+..++++++++|+++.+|..+|.++...|++ ++|+..|+++++++|+++.+|+.+|.++..
T Consensus 342 ~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~----------~eA~~~~~~al~~~p~~~~~~~~lg~~~~~ 411 (615)
T TIGR00990 342 CLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDP----------DKAEEDFDKALKLNSEDPDIYYHRAQLHFI 411 (615)
T ss_pred HHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 4577888999999999999999999999999999888888 999999999999999999999999999999
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhc
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~ 147 (174)
+| ++++|+.+|+++++++|++. .|+++++..|..+.++.++|.++..+
T Consensus 412 ~g-----------~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~ 480 (615)
T TIGR00990 412 KG-----------EFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQ 480 (615)
T ss_pred cC-----------CHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHc
Confidence 88 99999999999999999886 56778889999999999999999998
Q ss_pred ccc
Q 030634 148 QTL 150 (174)
Q Consensus 148 ~~~ 150 (174)
|+.
T Consensus 481 g~~ 483 (615)
T TIGR00990 481 NKF 483 (615)
T ss_pred cCH
Confidence 876
No 9
>PRK12370 invasion protein regulator; Provisional
Probab=99.64 E-value=9.1e-15 Score=131.82 Aligned_cols=119 Identities=13% Similarity=0.045 Sum_probs=109.9
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG 90 (174)
.+.+++|+..++++++++|+++.++..+|.++...|++ ++|+..|++|++++|+++.+|+.+|.++...|
T Consensus 317 ~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G 386 (553)
T PRK12370 317 QNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEY----------IVGSLLFKQANLLSPISADIKYYYGWNLFMAG 386 (553)
T ss_pred chHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 34589999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcC-CCChHHHHHHHHHHHhcc
Q 030634 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVS-TKAPELHMELHKHGINQQ 148 (174)
Q Consensus 91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~-~~~~~~~~~l~~~~~~~~ 148 (174)
++++|+.+++++++++|++. .++++++.+ |..+..+.+++.++..+|
T Consensus 387 -----------~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G 455 (553)
T PRK12370 387 -----------QLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKG 455 (553)
T ss_pred -----------CHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCC
Confidence 99999999999999999975 345666664 788999999999999999
Q ss_pred cc
Q 030634 149 TL 150 (174)
Q Consensus 149 ~~ 150 (174)
+.
T Consensus 456 ~~ 457 (553)
T PRK12370 456 KH 457 (553)
T ss_pred CH
Confidence 86
No 10
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.63 E-value=1.5e-15 Score=136.08 Aligned_cols=144 Identities=21% Similarity=0.223 Sum_probs=128.7
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|-=|+.++.|++.+++|+.+||+++-++..+|.=+....++ +.|..+|++||..||++-.|||.||.+|.
T Consensus 431 fSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~----------d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEF----------DKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred hhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHH----------HhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 33466788888889999889998888888888888887777 99999999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHh
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~ 146 (174)
+++ +++.|..+|++|+++||.+. .|++|+-++|++|-..++.+.++..
T Consensus 501 Kqe-----------k~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~ 569 (638)
T KOG1126|consen 501 KQE-----------KLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS 569 (638)
T ss_pred ccc-----------hhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence 988 99999999999999999997 7889999999999999999999999
Q ss_pred cccc-----------CCCCchhhHHHHHHHHHhhhcc
Q 030634 147 QQTL-----------GGGSSASSAQVNFCICVHQMKM 172 (174)
Q Consensus 147 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 172 (174)
.++- ...|+.++|++=++...-+|++
T Consensus 570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~ 606 (638)
T KOG1126|consen 570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGN 606 (638)
T ss_pred hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHcc
Confidence 9987 4459999999988877666654
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.62 E-value=2.3e-14 Score=130.29 Aligned_cols=140 Identities=17% Similarity=0.148 Sum_probs=129.2
Q ss_pred hhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAK---DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~---~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
.+.|++|++.++++++. +|..+.++..+|.++..+|++ ++|+..|+++++++|++..+|+.+|.++.
T Consensus 307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~----------~eA~~~~~kal~l~P~~~~~~~~la~~~~ 376 (615)
T TIGR00990 307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKH----------LEALADLSKSIELDPRVTQSYIKRASMNL 376 (615)
T ss_pred hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 35799999999999986 488899999999999999999 99999999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHh
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~ 146 (174)
.+| ++++|+.+|+++++++|++. .|+++++++|+.+..+.+++.++..
T Consensus 377 ~~g-----------~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~ 445 (615)
T TIGR00990 377 ELG-----------DPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK 445 (615)
T ss_pred HCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence 999 99999999999999999997 7889999999999999999999999
Q ss_pred cccc-----------CCCCchhhHHHHHHHHHhhhc
Q 030634 147 QQTL-----------GGGSSASSAQVNFCICVHQMK 171 (174)
Q Consensus 147 ~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 171 (174)
+|+. ...|...+++.+++.++..++
T Consensus 446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQN 481 (615)
T ss_pred CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence 9986 334888999999999887654
No 12
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.61 E-value=7.8e-15 Score=110.83 Aligned_cols=107 Identities=12% Similarity=0.143 Sum_probs=95.1
Q ss_pred HHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchh
Q 030634 18 RKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLS 97 (174)
Q Consensus 18 l~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~ 97 (174)
...++++++++|++ ++.+|.++...|++ ++|+..|++++.++|+++.+|+++|.++..+|
T Consensus 13 ~~~~~~al~~~p~~---~~~~g~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g------- 72 (144)
T PRK15359 13 EDILKQLLSVDPET---VYASGYASWQEGDY----------SRAVIDFSWLVMAQPWSWRAHIALAGTWMMLK------- 72 (144)
T ss_pred HHHHHHHHHcCHHH---HHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHh-------
Confidence 35789999999986 66789999999999 99999999999999999999999999999999
Q ss_pred hhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634 98 EAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (174)
Q Consensus 98 ~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~ 148 (174)
++++|+.+|+++++++|++. .|+++++++|.++..+.+.+.+.....
T Consensus 73 ----~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~ 140 (144)
T PRK15359 73 ----EYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVD 140 (144)
T ss_pred ----hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH
Confidence 99999999999999999886 677888888888888888877766543
No 13
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.56 E-value=5.5e-14 Score=103.16 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=93.0
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|-+.+.+++|+..+++++..+|.++.++.++|.++..+|++ ++|+..|+++++++|+++..++++|.++.
T Consensus 27 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEY----------EEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHh
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~ 128 (174)
..| ++++|+..|+++++++|++..+....+
T Consensus 97 ~~g-----------~~~~A~~~~~~al~~~p~~~~~~~~~~ 126 (135)
T TIGR02552 97 ALG-----------EPESALKALDLAIEICGENPEYSELKE 126 (135)
T ss_pred HcC-----------CHHHHHHHHHHHHHhccccchHHHHHH
Confidence 999 999999999999999999986554443
No 14
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.54 E-value=1.3e-13 Score=131.37 Aligned_cols=129 Identities=12% Similarity=0.120 Sum_probs=94.8
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
+.++|++++|+..+++++.++|+++.++.++|.++...|++ ++|+..|+++++++|+++.+++++|.++.
T Consensus 619 l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~----------eeAi~~l~~AL~l~P~~~~a~~nLA~al~ 688 (987)
T PRK09782 619 YRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDI----------AQSREMLERAHKGLPDDPALIRQLAYVNQ 688 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 44566666677777777777777777777777777666666 88888888888888888888888888888
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHh
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~ 146 (174)
.+| ++++|+.+|+++++++|++. .|.++..++|... +....|.+++.
T Consensus 689 ~lG-----------d~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~~~-a~~~~g~~~~~ 756 (987)
T PRK09782 689 RLD-----------DMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFDSS-IGLRSGAMSTA 756 (987)
T ss_pred HCC-----------CHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCccch-hccccchHhhh
Confidence 877 88888888888888888876 3455557777777 77777777777
Q ss_pred ccccCCC-Cchhh
Q 030634 147 QQTLGGG-SSASS 158 (174)
Q Consensus 147 ~~~~~~~-~~~~~ 158 (174)
++-.++. |-.++
T Consensus 757 ~~~~~~~~~~~~~ 769 (987)
T PRK09782 757 NNNVGGAAPGKSY 769 (987)
T ss_pred cccccCCCCCcch
Confidence 7776555 55555
No 15
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.52 E-value=4e-13 Score=106.75 Aligned_cols=91 Identities=13% Similarity=0.201 Sum_probs=81.6
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-Hh
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH-TS 88 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~-~~ 88 (174)
.....++++..++++++.+|++++.|..+|.++...|++ ++|+.+|+++++++|+++.++.++|.++ ..
T Consensus 51 ~~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~----------~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~ 120 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDY----------DNALLAYRQALQLRGENAELYAALATVLYYQ 120 (198)
T ss_pred CchhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 456778999999999999999999999999999999999 9999999999999999999999999985 56
Q ss_pred CCCCccchhhhhcC--HHHHHHHHHHHHHhCCCCH
Q 030634 89 CGFLTADLSEAKGD--FDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 89 lG~~~~~~~~a~~~--~~~Ai~~~~kAl~l~P~~~ 121 (174)
.| + +++|...++++++++|++.
T Consensus 121 ~g-----------~~~~~~A~~~l~~al~~dP~~~ 144 (198)
T PRK10370 121 AG-----------QHMTPQTREMIDKALALDANEV 144 (198)
T ss_pred cC-----------CCCcHHHHHHHHHHHHhCCCCh
Confidence 66 5 6999999999888888775
No 16
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=1.2e-12 Score=101.05 Aligned_cols=123 Identities=17% Similarity=0.241 Sum_probs=111.0
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
.|-..+.+++|+..++++++.+|+++.++..+|.++...|++ ++|+..++++++++|+++.+++++|.++
T Consensus 40 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 40 GYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGEL----------EKAEDSFRRALTLNPNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence 355678999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCC--CCH---------------------HHHHHHhcCCCChHHHHHHHHH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEP--TNE---------------------LYQKSLEVSTKAPELHMELHKH 143 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P--~~~---------------------~y~~Al~l~~~~~~~~~~l~~~ 143 (174)
...| ++++|+.+|+++++..+ ... .+.++++.+|..+..+..++.+
T Consensus 110 ~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 178 (234)
T TIGR02521 110 CQQG-----------KYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAEL 178 (234)
T ss_pred HHcc-----------cHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHH
Confidence 9998 99999999999998643 221 6778888999999999999999
Q ss_pred HHhcccc
Q 030634 144 GINQQTL 150 (174)
Q Consensus 144 ~~~~~~~ 150 (174)
+..+|..
T Consensus 179 ~~~~~~~ 185 (234)
T TIGR02521 179 YYLRGQY 185 (234)
T ss_pred HHHcCCH
Confidence 9988876
No 17
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.52 E-value=2.4e-13 Score=116.81 Aligned_cols=97 Identities=16% Similarity=0.193 Sum_probs=91.3
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
.-..+.|++|+..|.++++++|+++.+++++|.++..+|++ ++|+..++++++++|+++.+|+.+|.++.
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~----------~eAl~~~~~Al~l~P~~~~a~~~lg~~~~ 81 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNF----------TEAVADANKAIELDPSLAKAYLRKGTACM 81 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCCHHHHHHHHHHHH
Confidence 34567999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK 125 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~ 125 (174)
.+| +|++|+.+|+++++++|++..+..
T Consensus 82 ~lg-----------~~~eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 82 KLE-----------EYQTAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HhC-----------CHHHHHHHHHHHHHhCCCCHHHHH
Confidence 999 999999999999999999984433
No 18
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.51 E-value=1.7e-13 Score=105.10 Aligned_cols=92 Identities=15% Similarity=0.126 Sum_probs=87.2
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
.+-+.|++++|.+.|+-++.+||.++..|++||.++..+|++ ++||.+|.+|+.++|+++.+++++|.|+
T Consensus 44 ~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~----------~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHW----------GEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 355788999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~ 119 (174)
..+| +.+.|.++|+.|+..--+
T Consensus 114 L~lG-----------~~~~A~~aF~~Ai~~~~~ 135 (157)
T PRK15363 114 LACD-----------NVCYAIKALKAVVRICGE 135 (157)
T ss_pred HHcC-----------CHHHHHHHHHHHHHHhcc
Confidence 9999 999999999999988633
No 19
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.49 E-value=2.2e-13 Score=89.53 Aligned_cols=68 Identities=28% Similarity=0.518 Sum_probs=65.1
Q ss_pred CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcC-HHHHHH
Q 030634 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGD-FDKASE 108 (174)
Q Consensus 30 ~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~-~~~Ai~ 108 (174)
.++.+|..+|.++...|++ ++|+..|+++++++|+++.+|+++|.++..+| + +++|+.
T Consensus 1 e~a~~~~~~g~~~~~~~~~----------~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~-----------~~~~~A~~ 59 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDY----------EEAIEYFEKAIELDPNNAEAYYNLGLAYMKLG-----------KDYEEAIE 59 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTT-----------THHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhC-----------ccHHHHHH
Confidence 3689999999999999999 99999999999999999999999999999987 5 999999
Q ss_pred HHHHHHHhCC
Q 030634 109 CFQRAVDEEP 118 (174)
Q Consensus 109 ~~~kAl~l~P 118 (174)
+++++++++|
T Consensus 60 ~~~~al~l~P 69 (69)
T PF13414_consen 60 DFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHST
T ss_pred HHHHHHHcCc
Confidence 9999999999
No 20
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.48 E-value=1.8e-12 Score=119.19 Aligned_cols=152 Identities=7% Similarity=-0.064 Sum_probs=116.2
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
..|.+++|+..+++++..+|+++.++..+|.++...|++ ++|+..|+++++++|+++.++..+|.++...
T Consensus 88 ~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~----------~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~ 157 (656)
T PRK15174 88 ASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQY----------ATVADLAEQAWLAFSGNSQIFALHLRTLVLM 157 (656)
T ss_pred hcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC
Confidence 467888999999999999999999999999999888888 8999999999999999999999999998888
Q ss_pred CCC-------------ccchh---------hhhcCHHHHHHHHHHHHHhCCCCH----------------------HHHH
Q 030634 90 GFL-------------TADLS---------EAKGDFDKASECFQRAVDEEPTNE----------------------LYQK 125 (174)
Q Consensus 90 G~~-------------~~~~~---------~a~~~~~~Ai~~~~kAl~l~P~~~----------------------~y~~ 125 (174)
|+. .|+.+ ...|++++|+..++++++.+|... .|++
T Consensus 158 g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~ 237 (656)
T PRK15174 158 DKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGES 237 (656)
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 831 11111 224667777777777777665221 5677
Q ss_pred HHhcCCCChHHHHHHHHHHHhccccCC---------------CCchhhHHHHHHHHHhhhc
Q 030634 126 SLEVSTKAPELHMELHKHGINQQTLGG---------------GSSASSAQVNFCICVHQMK 171 (174)
Q Consensus 126 Al~l~~~~~~~~~~l~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~ 171 (174)
+++++|+.+..+.+++.++..+|+... .|+...++.|++.++.+.+
T Consensus 238 al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g 298 (656)
T PRK15174 238 ALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG 298 (656)
T ss_pred HHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence 778888888888888888888877532 2777778888877766543
No 21
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.48 E-value=5.7e-13 Score=105.84 Aligned_cols=96 Identities=14% Similarity=0.107 Sum_probs=87.8
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHH-HHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEAL-LELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l-~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a 85 (174)
-|..++++++|+..++++++++|++++++..+|.++ ...|++ ..++|+..++++++++|+++.+++++|.+
T Consensus 82 ~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~--------~~~~A~~~l~~al~~dP~~~~al~~LA~~ 153 (198)
T PRK10370 82 YYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQH--------MTPQTREMIDKALALDANEVTALMLLASD 153 (198)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCC--------CcHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence 467889999999999999999999999999999986 566662 01899999999999999999999999999
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+...| ++++|+.+++++++++|.+.
T Consensus 154 ~~~~g-----------~~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 154 AFMQA-----------DYAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred HHHcC-----------CHHHHHHHHHHHHhhCCCCc
Confidence 99999 99999999999999999766
No 22
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.47 E-value=1.6e-12 Score=104.91 Aligned_cols=121 Identities=18% Similarity=0.204 Sum_probs=112.6
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|=+.|.+..|.+-+++|++.||++..+|..++.+|...|+. +.|-+.|++|++++|++.+++.|.|.-++
T Consensus 45 YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~----------~~A~e~YrkAlsl~p~~GdVLNNYG~FLC 114 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGEN----------DLADESYRKALSLAPNNGDVLNNYGAFLC 114 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCh----------hhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence 55678999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHhcCCCChHHHHHHHHH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHMELHKH 143 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------------------~y~~Al~l~~~~~~~~~~l~~~ 143 (174)
.+| +|++|...|++|+. +|... .|+++|+++|+.|.....++..
T Consensus 115 ~qg-----------~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~ 182 (250)
T COG3063 115 AQG-----------RPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARL 182 (250)
T ss_pred hCC-----------ChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHH
Confidence 999 99999999999987 45443 7899999999999999999999
Q ss_pred HHhcccc
Q 030634 144 GINQQTL 150 (174)
Q Consensus 144 ~~~~~~~ 150 (174)
.+.-|..
T Consensus 183 ~~~~~~y 189 (250)
T COG3063 183 HYKAGDY 189 (250)
T ss_pred HHhcccc
Confidence 9988877
No 23
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.46 E-value=1.3e-12 Score=124.74 Aligned_cols=115 Identities=15% Similarity=0.134 Sum_probs=74.1
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
|++++|+..++++++++|+ +.++.++|.++..+|++ ++|+..|+++++++|+++.++.++|.++...|
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~----------deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G- 657 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNV----------PAAVSDLRAALELEPNNSNYQAALGYALWDSG- 657 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-
Confidence 6666666666666666664 66666666666666666 66666666666666666666666666666666
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~ 148 (174)
++++|+.+|+++++++|++. .|++++++.|.........+.+...+.
T Consensus 658 ----------~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~ 725 (987)
T PRK09782 658 ----------DIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRF 725 (987)
T ss_pred ----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHH
Confidence 66666666666666666665 456666666666555555555554444
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.46 E-value=2.4e-12 Score=118.41 Aligned_cols=125 Identities=12% Similarity=0.035 Sum_probs=87.1
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
-+++++++|+..+++++..+|+++.+++++|.++...|++.+ ...+|+..|+++++++|+++.++.++|.++..
T Consensus 223 ~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~e------A~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~ 296 (656)
T PRK15174 223 CAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSRE------AKLQAAEHWRHALQFNSDNVRIVTLYADALIR 296 (656)
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchh------hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 346677777777777777777777777777777777777710 00137777777777777777777777777777
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhc
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~ 147 (174)
.| ++++|+.+++++++++|++. .|+++++.+|..+..+..++.++..+
T Consensus 297 ~g-----------~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~ 365 (656)
T PRK15174 297 TG-----------QNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQA 365 (656)
T ss_pred CC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHC
Confidence 77 77777777777777777766 45556666666666555566666555
Q ss_pred ccc
Q 030634 148 QTL 150 (174)
Q Consensus 148 ~~~ 150 (174)
|+.
T Consensus 366 G~~ 368 (656)
T PRK15174 366 GKT 368 (656)
T ss_pred CCH
Confidence 554
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.45 E-value=3e-12 Score=124.08 Aligned_cols=142 Identities=17% Similarity=0.249 Sum_probs=121.7
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHH--------------HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADN--------------LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a--------------~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld 72 (174)
-|.+++++++|+..++++++++|++... ...+|.++...|++ ++|+..|+++++++
T Consensus 312 ~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~----------~eA~~~~~~Al~~~ 381 (1157)
T PRK11447 312 AYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL----------AQAERLYQQARQVD 381 (1157)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhC
Confidence 3668899999999999999999987532 23447777888887 99999999999999
Q ss_pred CCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-------------------------------
Q 030634 73 PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------------- 121 (174)
Q Consensus 73 P~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------------------------- 121 (174)
|+++.+++.||.++...| ++++|+.+|+++++++|++.
T Consensus 382 P~~~~a~~~Lg~~~~~~g-----------~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~ 450 (1157)
T PRK11447 382 NTDSYAVLGLGDVAMARK-----------DYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRR 450 (1157)
T ss_pred CCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHH
Confidence 999999999999999999 99999999999999999864
Q ss_pred --------------------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc-----------CCCCchhh
Q 030634 122 --------------------------------LYQKSLEVSTKAPELHMELHKHGINQQTL-----------GGGSSASS 158 (174)
Q Consensus 122 --------------------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~ 158 (174)
.|+++++++|+++.++.+++.++..+|+. ...|...+
T Consensus 451 ~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~ 530 (1157)
T PRK11447 451 SIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPE 530 (1157)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH
Confidence 35667788999999999999999998887 23488888
Q ss_pred HHHHHHHHHhh
Q 030634 159 AQVNFCICVHQ 169 (174)
Q Consensus 159 ~~~~~~~~~~~ 169 (174)
++++.++.+..
T Consensus 531 ~~~a~al~l~~ 541 (1157)
T PRK11447 531 QVYAYGLYLSG 541 (1157)
T ss_pred HHHHHHHHHHh
Confidence 88888876543
No 26
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.42 E-value=1e-11 Score=113.04 Aligned_cols=139 Identities=17% Similarity=0.206 Sum_probs=108.3
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|.+.|.+++|++.+++++...|++ ..+..+|.++...|++ ++|+..++++++.+|+++.+++.+|.++.
T Consensus 713 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~----------~~A~~~~~~~l~~~~~~~~~~~~la~~~~ 781 (899)
T TIGR02917 713 YLRQKDYPAAIQAYRKALKRAPSS-QNAIKLHRALLASGNT----------AEAVKTLEAWLKTHPNDAVLRTALAELYL 781 (899)
T ss_pred HHHCCCHHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 345567777777777777777766 5666777777777776 88888888888888888888888888888
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHhcCCCChHHHHHHHHHHHhc
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------------~y~~Al~l~~~~~~~~~~l~~~~~~~ 147 (174)
..| ++++|+.+|+++++.+|++. .+++++++.|..+..+.+++.++..+
T Consensus 782 ~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 782 AQK-----------DYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKDPRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HCc-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 888 88888888888888888876 46677788888888888888888888
Q ss_pred ccc-----------CCCCchhhHHHHHHHHHh
Q 030634 148 QTL-----------GGGSSASSAQVNFCICVH 168 (174)
Q Consensus 148 ~~~-----------~~~~~~~~~~~~~~~~~~ 168 (174)
|+. ...|+..++..|.+.++-
T Consensus 851 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 882 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEAAAIRYHLALALL 882 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHH
Confidence 776 333777778877776654
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=3.9e-12 Score=111.06 Aligned_cols=122 Identities=18% Similarity=0.201 Sum_probs=104.4
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|--.+..+.|+..+++|+++||+...+|..+|.=+.++++. ..||..|++|++++|.|..|||.||.+|.
T Consensus 340 YSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt----------~AAi~sYRrAvdi~p~DyRAWYGLGQaYe 409 (559)
T KOG1155|consen 340 YSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNT----------HAAIESYRRAVDINPRDYRAWYGLGQAYE 409 (559)
T ss_pred HHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhccc----------HHHHHHHHHHHhcCchhHHHHhhhhHHHH
Confidence 34456889999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHh
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~ 146 (174)
.++ -..=|+.+|+||+++.|++. +|++|+....-....+..||+++..
T Consensus 410 im~-----------Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~ 478 (559)
T KOG1155|consen 410 IMK-----------MHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE 478 (559)
T ss_pred Hhc-----------chHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 988 88889999999888888877 6666666666666666667666666
Q ss_pred cccc
Q 030634 147 QQTL 150 (174)
Q Consensus 147 ~~~~ 150 (174)
.+..
T Consensus 479 l~d~ 482 (559)
T KOG1155|consen 479 LKDL 482 (559)
T ss_pred HHhH
Confidence 5544
No 28
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.42 E-value=5.8e-12 Score=100.77 Aligned_cols=152 Identities=11% Similarity=0.092 Sum_probs=115.8
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH---HHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDA---DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLW 80 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~---~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~---a~~ 80 (174)
.+-+.+.|++|+..+++++..+|+++ .+++.+|.++...|++ ++|+..|+++++.+|+++. +++
T Consensus 42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDY----------AEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHCcCCCchHHHHH
Confidence 35567899999999999999999986 6889999999999999 9999999999999999887 799
Q ss_pred HHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHh----cCCCChHHHHHHHHHHHhcccc------
Q 030634 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE----VSTKAPELHMELHKHGINQQTL------ 150 (174)
Q Consensus 81 ~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~----l~~~~~~~~~~l~~~~~~~~~~------ 150 (174)
.+|.++.... +......+++++|+..|+++++.+|++....+++. ...........++..+..+|+.
T Consensus 112 ~~g~~~~~~~---~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~ 188 (235)
T TIGR03302 112 LRGLSNYNQI---DRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINR 188 (235)
T ss_pred HHHHHHHHhc---ccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 9999998751 01111123899999999999999999985544432 1111123345677777777766
Q ss_pred --------CCCCchhhHHHHHHHHHhhhc
Q 030634 151 --------GGGSSASSAQVNFCICVHQMK 171 (174)
Q Consensus 151 --------~~~~~~~~~~~~~~~~~~~~~ 171 (174)
...|...+++++.+.+...++
T Consensus 189 ~~~al~~~p~~~~~~~a~~~l~~~~~~lg 217 (235)
T TIGR03302 189 FETVVENYPDTPATEEALARLVEAYLKLG 217 (235)
T ss_pred HHHHHHHCCCCcchHHHHHHHHHHHHHcC
Confidence 123566788888887766554
No 29
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.41 E-value=7.4e-12 Score=88.90 Aligned_cols=100 Identities=18% Similarity=0.171 Sum_probs=92.0
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWS 81 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~ 81 (174)
+-+++.+++|++.+.+++..+|++ +.+++.+|.++...|++ ++|+..|++++..+|++ +.+++.
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~~~~ 81 (119)
T TIGR02795 12 VLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKY----------ADAAKAFLAVVKKYPKSPKAPDALLK 81 (119)
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccH----------HHHHHHHHHHHHHCCCCCcccHHHHH
Confidence 556789999999999999999987 68999999999999999 99999999999999986 678999
Q ss_pred HHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHh
Q 030634 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLE 128 (174)
Q Consensus 82 LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~ 128 (174)
+|.++..+| ++++|+.+++++++..|++.....+..
T Consensus 82 ~~~~~~~~~-----------~~~~A~~~~~~~~~~~p~~~~~~~~~~ 117 (119)
T TIGR02795 82 LGMSLQELG-----------DKEKAKATLQQVIKRYPGSSAAKLAQK 117 (119)
T ss_pred HHHHHHHhC-----------ChHHHHHHHHHHHHHCcCChhHHHHHh
Confidence 999999998 999999999999999999987777654
No 30
>PLN02789 farnesyltranstransferase
Probab=99.41 E-value=7.9e-12 Score=106.20 Aligned_cols=143 Identities=10% Similarity=-0.035 Sum_probs=107.3
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS-QFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g-~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
+..++++++|+..+.+++.++|.+.++|..+|.++..+| .+ ++|+..++++++.+|++..+|+.+|.++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l----------~eeL~~~~~~i~~npknyqaW~~R~~~l 116 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADL----------EEELDFAEDVAEDNPKNYQIWHHRRWLA 116 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhH----------HHHHHHHHHHHHHCCcchHHhHHHHHHH
Confidence 344567888999999999999999999999999988877 35 7888888888888888888888888888
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~ 145 (174)
..+| ...+++++.++.+++++||+|. .+.++++.+|....++.+.+.++.
T Consensus 117 ~~l~---------~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~ 187 (320)
T PLN02789 117 EKLG---------PDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT 187 (320)
T ss_pred HHcC---------chhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence 7777 1123677888888888888775 556777788888888877777765
Q ss_pred hcccc------------------CCCCchhhHHHHHHHHHhh
Q 030634 146 NQQTL------------------GGGSSASSAQVNFCICVHQ 169 (174)
Q Consensus 146 ~~~~~------------------~~~~~~~~~~~~~~~~~~~ 169 (174)
..+.+ -..|...|+.++.+.++..
T Consensus 188 ~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~ 229 (320)
T PLN02789 188 RSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKD 229 (320)
T ss_pred hccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhc
Confidence 43211 1237777777777777665
No 31
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.40 E-value=1.9e-11 Score=111.20 Aligned_cols=154 Identities=15% Similarity=0.145 Sum_probs=107.5
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|.+++.+++|+..++++++.+|.++.++..+|.++...|++ ++|+..|+++++++|++..+++.++.++.
T Consensus 611 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 680 (899)
T TIGR02917 611 QLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNY----------AKAITSLKRALELKPDNTEAQIGLAQLLL 680 (899)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 55667777788888887777777777777788777777777 77777777777777776666666666665
Q ss_pred hCCCC-------------c----------cchhhhhcCHHHHHHHHHHHHHhCCCCH--------------------HHH
Q 030634 88 SCGFL-------------T----------ADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQ 124 (174)
Q Consensus 88 ~lG~~-------------~----------~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------------~y~ 124 (174)
..|+. . +......|++++|+..|+++++.+|++. .++
T Consensus 681 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 681 AAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred HcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 55521 0 1112234588888888888888888764 456
Q ss_pred HHHhcCCCChHHHHHHHHHHHhcccc-----------CCCCchhhHHHHHHHHHhhhc
Q 030634 125 KSLEVSTKAPELHMELHKHGINQQTL-----------GGGSSASSAQVNFCICVHQMK 171 (174)
Q Consensus 125 ~Al~l~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 171 (174)
++++..|.++.++..++.++..+|+. ...|+...++.|++......+
T Consensus 761 ~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 818 (899)
T TIGR02917 761 AWLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELK 818 (899)
T ss_pred HHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 66777888888888888888877776 234777777777776665543
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.39 E-value=1.2e-11 Score=119.81 Aligned_cols=117 Identities=20% Similarity=0.250 Sum_probs=104.6
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH---------
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT--------- 78 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a--------- 78 (174)
+-.++++++|+..++++++++|++++++..+|.++...|++ ++|+..|+++++++|++...
T Consensus 279 ~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~----------~eA~~~l~~Al~~~p~~~~~~~~~~ll~~ 348 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDR----------ARAVAQFEKALALDPHSSNRDKWESLLKV 348 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCccchhHHHHHHHh
Confidence 34568999999999999999999999999999999999999 99999999999999987642
Q ss_pred -----HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCC
Q 030634 79 -----LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTK 132 (174)
Q Consensus 79 -----~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~ 132 (174)
...+|.++...| ++++|+.+|+++++++|++. .|+++++++|.
T Consensus 349 ~~~~~~~~~g~~~~~~g-----------~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~ 417 (1157)
T PRK11447 349 NRYWLLIQQGDAALKAN-----------NLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG 417 (1157)
T ss_pred hhHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 235578888888 99999999999999999987 78999999999
Q ss_pred ChHHHHHHHHHHH
Q 030634 133 APELHMELHKHGI 145 (174)
Q Consensus 133 ~~~~~~~l~~~~~ 145 (174)
.+.++.+++.++.
T Consensus 418 ~~~a~~~L~~l~~ 430 (1157)
T PRK11447 418 NTNAVRGLANLYR 430 (1157)
T ss_pred CHHHHHHHHHHHH
Confidence 9998888877764
No 33
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=2.4e-11 Score=93.76 Aligned_cols=122 Identities=20% Similarity=0.278 Sum_probs=101.7
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--PAKHYTLWSLGN 84 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld--P~~~~a~~~LG~ 84 (174)
-|-+++.+++|++.++++++.+|.++.++.++|.++...|++ ++|+..|++++... |.....++++|.
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~~l~~ 143 (234)
T TIGR02521 74 YYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKY----------EQAMQQFEQAIEDPLYPQPARSLENAGL 143 (234)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccH----------HHHHHHHHHHHhccccccchHHHHHHHH
Confidence 356778999999999999999999999999999999999998 99999999999853 567788999999
Q ss_pred HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHH
Q 030634 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKH 143 (174)
Q Consensus 85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~ 143 (174)
++...| ++++|+.+++++++.+|++. .++++++..|..+..+..++.+
T Consensus 144 ~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~ 212 (234)
T TIGR02521 144 CALKAG-----------DFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRI 212 (234)
T ss_pred HHHHcC-----------CHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 999988 99999999999999999886 4455556666666666656555
Q ss_pred HHhccc
Q 030634 144 GINQQT 149 (174)
Q Consensus 144 ~~~~~~ 149 (174)
+...|.
T Consensus 213 ~~~~~~ 218 (234)
T TIGR02521 213 ARALGD 218 (234)
T ss_pred HHHHhh
Confidence 554443
No 34
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.39 E-value=7.5e-12 Score=82.16 Aligned_cols=92 Identities=25% Similarity=0.421 Sum_probs=87.0
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
.+-+++.+++|+..++++++..|.++.++..+|.++...+++ ++|+..|++++++.|.+..+++.+|.++
T Consensus 9 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 9 LYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKY----------EEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 355688999999999999999999999999999999999998 9999999999999999999999999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~ 119 (174)
...| ++++|..++.++++.+|+
T Consensus 79 ~~~~-----------~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 79 YKLG-----------KYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHH-----------hHHHHHHHHHHHHccCCC
Confidence 9988 999999999999999884
No 35
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.37 E-value=1.1e-11 Score=90.79 Aligned_cols=82 Identities=15% Similarity=0.236 Sum_probs=76.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhh
Q 030634 19 KTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSE 98 (174)
Q Consensus 19 ~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~ 98 (174)
..+++++..+|+++.+.+.+|.++...|++ ++|+..|++++.++|+++.+|+++|.++...|
T Consensus 4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~-------- 65 (135)
T TIGR02552 4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRY----------DEALKLFQLLAAYDPYNSRYWLGLAACCQMLK-------- 65 (135)
T ss_pred hhHHHHHcCChhhHHHHHHHHHHHHHcccH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH--------
Confidence 457889999999999999999999999999 99999999999999999999999999999988
Q ss_pred hhcCHHHHHHHHHHHHHhCCCCH
Q 030634 99 AKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 99 a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
++++|+.+++++++.+|++.
T Consensus 66 ---~~~~A~~~~~~~~~~~p~~~ 85 (135)
T TIGR02552 66 ---EYEEAIDAYALAAALDPDDP 85 (135)
T ss_pred ---HHHHHHHHHHHHHhcCCCCh
Confidence 99999999999888877654
No 36
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.37 E-value=2.8e-12 Score=83.45 Aligned_cols=65 Identities=31% Similarity=0.513 Sum_probs=60.1
Q ss_pred HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (174)
Q Consensus 36 ~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~ 115 (174)
+.+|.+++..|++ ++|+.+|+++++.+|+++.+|+.+|.++..+| ++++|+.+|+++++
T Consensus 1 ~~~a~~~~~~g~~----------~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g-----------~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 1 YALARALYQQGDY----------DEAIAAFEQALKQDPDNPEAWYLLGRILYQQG-----------RYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHHCTHH----------HHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT------------HHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHH
Confidence 4678999999998 99999999999999999999999999999999 99999999999999
Q ss_pred hCCCCH
Q 030634 116 EEPTNE 121 (174)
Q Consensus 116 l~P~~~ 121 (174)
++|+++
T Consensus 60 ~~P~~p 65 (65)
T PF13432_consen 60 LDPDNP 65 (65)
T ss_dssp HSTT-H
T ss_pred HCcCCC
Confidence 999985
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.37 E-value=3.5e-12 Score=114.71 Aligned_cols=120 Identities=19% Similarity=0.233 Sum_probs=110.5
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
....|+.|.+.|++|+..+|.+-.+|+.+|.+|.+++++ +.|.-+|++|+++||.+.-....+|.++..+
T Consensus 467 ~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~----------e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~ 536 (638)
T KOG1126|consen 467 ATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL----------EFAEFHFQKAVEINPSNSVILCHIGRIQHQL 536 (638)
T ss_pred hhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchh----------hHHHHHHHhhhcCCccchhHHhhhhHHHHHh
Confidence 455899999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------HHHHHH-------hcCCCChHHHHHHHHHHHhcc
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------LYQKSL-------EVSTKAPELHMELHKHGINQQ 148 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------~y~~Al-------~l~~~~~~~~~~l~~~~~~~~ 148 (174)
| +.++|+.+|++|+-+||.++ .|.+|| ++.|+....|.-+|.++...|
T Consensus 537 k-----------~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~ 605 (638)
T KOG1126|consen 537 K-----------RKDKALQLYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLG 605 (638)
T ss_pred h-----------hhhHHHHHHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHc
Confidence 8 99999999999999999998 334444 788999999999999998776
Q ss_pred cc
Q 030634 149 TL 150 (174)
Q Consensus 149 ~~ 150 (174)
.-
T Consensus 606 ~~ 607 (638)
T KOG1126|consen 606 NT 607 (638)
T ss_pred cc
Confidence 54
No 38
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.37 E-value=2.5e-11 Score=101.54 Aligned_cols=103 Identities=22% Similarity=0.169 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHHHHhh---CCC-CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 12 LLSEHNRKTAEANYAK---DPL-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~---~P~-~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
...+.++..+.+++.. +|. .+..|+.+|.++...|++ ++|+..|+++++++|+++.+|+++|.++.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~Al~l~P~~~~a~~~lg~~~~ 109 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLR----------ALARNDFSQALALRPDMADAYNYLGIYLT 109 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 4678889999999964 444 478899999999999999 99999999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPE 135 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~ 135 (174)
.+| ++++|+..|+++++++|++. .++++++++|+++.
T Consensus 110 ~~g-----------~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~ 167 (296)
T PRK11189 110 QAG-----------NFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPY 167 (296)
T ss_pred HCC-----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH
Confidence 999 99999999999999999987 67888899999873
No 39
>PLN02789 farnesyltranstransferase
Probab=99.36 E-value=3e-11 Score=102.71 Aligned_cols=122 Identities=11% Similarity=0.030 Sum_probs=108.2
Q ss_pred Hhhh-hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 9 DRLL-LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 9 ~~~~-~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
..++ .+++++..+.+++..+|++.++|++++.++..+|+. .+++++..+++++++||++..+|..+|.++.
T Consensus 82 ~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~--------~~~~el~~~~kal~~dpkNy~AW~~R~w~l~ 153 (320)
T PLN02789 82 EALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPD--------AANKELEFTRKILSLDAKNYHAWSHRQWVLR 153 (320)
T ss_pred HHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCch--------hhHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3455 589999999999999999999999999999888762 1267899999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH----------------------------HHHHHHhcCCCChHHHHH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------------LYQKSLEVSTKAPELHME 139 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~----------------------------~y~~Al~l~~~~~~~~~~ 139 (174)
.+| ++++|++++.++|++||.|. ...+++.++|+...+|..
T Consensus 154 ~l~-----------~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Y 222 (320)
T PLN02789 154 TLG-----------GWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRY 222 (320)
T ss_pred Hhh-----------hHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 998 99999999999999999986 234788999999999999
Q ss_pred HHHHHHhccc
Q 030634 140 LHKHGINQQT 149 (174)
Q Consensus 140 l~~~~~~~~~ 149 (174)
++.++...++
T Consensus 223 l~~ll~~~~~ 232 (320)
T PLN02789 223 LRGLFKDDKE 232 (320)
T ss_pred HHHHHhcCCc
Confidence 9999988554
No 40
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.33 E-value=1.2e-11 Score=110.03 Aligned_cols=129 Identities=24% Similarity=0.362 Sum_probs=105.5
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
|...+|.-+++.|+..+|.+.++|..||.+..+.++- ..||..+++++++||++-+++..||..|...|.
T Consensus 299 G~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E----------~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~ 368 (579)
T KOG1125|consen 299 GDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENE----------QNAISALRRCLELDPTNLEALMALAVSYTNEGL 368 (579)
T ss_pred CCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccch----------HHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhh
Confidence 4578899999999999999999999999999998776 899999999999999999999999999988871
Q ss_pred --------------------Cc---------------------------------------cchh-------hhhcCHHH
Q 030634 92 --------------------LT---------------------------------------ADLS-------EAKGDFDK 105 (174)
Q Consensus 92 --------------------~~---------------------------------------~~~~-------~a~~~~~~ 105 (174)
++ |++. --.++|++
T Consensus 369 q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 369 QNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 00 1111 11455788
Q ss_pred HHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 106 ASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 106 Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
|++||+.||..+|+|. .|++|+++-|..+.+++|||...+++|--
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~y 514 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAY 514 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhH
Confidence 8888888888888877 67888888888888888888877777643
No 41
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.31 E-value=3.7e-11 Score=98.96 Aligned_cols=122 Identities=19% Similarity=0.222 Sum_probs=83.4
Q ss_pred HHhhhhHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKD--PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~--P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a 85 (174)
|.+.+.++++...+.++.... |.++..|..+|.++...|+. ++|+.+|+++++++|+++.++..++.+
T Consensus 120 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~----------~~A~~~~~~al~~~P~~~~~~~~l~~~ 189 (280)
T PF13429_consen 120 YYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDP----------DKALRDYRKALELDPDDPDARNALAWL 189 (280)
T ss_dssp HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHH----------HHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 566677777777777766544 66778888888888887777 888888888888888888888888888
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHH
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHG 144 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~ 144 (174)
+...| +++++.+.+++..+..|+++ .|++++..+|++|....+++.++
T Consensus 190 li~~~-----------~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l 258 (280)
T PF13429_consen 190 LIDMG-----------DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADAL 258 (280)
T ss_dssp HCTTC-----------HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHH
T ss_pred HHHCC-----------ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccc
Confidence 88777 77777777766666665554 66777777888888888888888
Q ss_pred Hhcccc
Q 030634 145 INQQTL 150 (174)
Q Consensus 145 ~~~~~~ 150 (174)
...|+.
T Consensus 259 ~~~g~~ 264 (280)
T PF13429_consen 259 EQAGRK 264 (280)
T ss_dssp T-----
T ss_pred cccccc
Confidence 777765
No 42
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.30 E-value=4.1e-11 Score=91.96 Aligned_cols=104 Identities=16% Similarity=0.050 Sum_probs=83.7
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
+..++.+++|+..+++++.+.|+. +.++.++|.++...|++ ++|+..+++++.++|....++.++|.
T Consensus 45 ~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~----------~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEH----------TKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 456789999999999999997763 45999999999999999 99999999999999999999999999
Q ss_pred HHHhCCCC---ccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 85 AHTSCGFL---TADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 85 a~~~lG~~---~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
++..+|+. ..+..++...+++|+.+|++++..+|++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 99955521 22444555556666666666666776544
No 43
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.29 E-value=5.8e-11 Score=109.90 Aligned_cols=91 Identities=11% Similarity=0.102 Sum_probs=79.0
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
++|++++|+..++.+++++|++..++.+++.++.+.+++ ++|+..+++++..+|+++.+++.+|.++..+
T Consensus 98 ~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~----------eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~ 167 (694)
T PRK15179 98 AAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGI----------EAGRAEIELYFSGGSSSAREILLEAKSWDEI 167 (694)
T ss_pred HcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccH----------HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHh
Confidence 567888888888888888888888888888888888888 8888888888888888888888888888888
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
| ++++|+.+|++++..+|+++
T Consensus 168 g-----------~~~~A~~~y~~~~~~~p~~~ 188 (694)
T PRK15179 168 G-----------QSEQADACFERLSRQHPEFE 188 (694)
T ss_pred c-----------chHHHHHHHHHHHhcCCCcH
Confidence 8 88888888888888888766
No 44
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.29 E-value=9.8e-12 Score=85.11 Aligned_cols=81 Identities=20% Similarity=0.295 Sum_probs=74.3
Q ss_pred hhhHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 11 LLLSEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~--~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
++.|++|+..++++++.+|. +...++.+|.+++.+|++ ++|+..+++ ++.+|.++..++.+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y----------~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKY----------EEAIELLQK-LKLDPSNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHH----------HHHHHHHHC-HTHHHCHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCH----------HHHHHHHHH-hCCCCCCHHHHHHHHHHHHH
Confidence 57899999999999999995 577888899999999999 999999999 99999999999999999999
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHH
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRA 113 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kA 113 (174)
+| +|++|+.+++++
T Consensus 71 l~-----------~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LG-----------KYEEAIKALEKA 84 (84)
T ss_dssp TT------------HHHHHHHHHHH
T ss_pred hC-----------CHHHHHHHHhcC
Confidence 99 999999999985
No 45
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.29 E-value=8e-11 Score=90.40 Aligned_cols=96 Identities=17% Similarity=0.207 Sum_probs=85.2
Q ss_pred HHHHHhhC-CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhh
Q 030634 21 AEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEA 99 (174)
Q Consensus 21 ~~~al~~~-P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a 99 (174)
......++ +++.+..+.+|..+...|++ ++|++.|+-+..+||.++..|++||.|+..+|
T Consensus 23 l~~l~~~~~~~~l~~lY~~A~~ly~~G~l----------~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g--------- 83 (157)
T PRK15363 23 LRMLLDDDVTQPLNTLYRYAMQLMEVKEF----------AGAARLFQLLTIYDAWSFDYWFRLGECCQAQK--------- 83 (157)
T ss_pred HHHHHCCChHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh---------
Confidence 44566788 99999999999999999999 99999999999999999999999999999988
Q ss_pred hcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 100 KGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 100 ~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
+|++|+++|.+|+.++|+ +|..+.++|.+++..|..
T Consensus 84 --~~~~AI~aY~~A~~L~~d-------------dp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 84 --HWGEAIYAYGRAAQIKID-------------APQAPWAAAECYLACDNV 119 (157)
T ss_pred --hHHHHHHHHHHHHhcCCC-------------CchHHHHHHHHHHHcCCH
Confidence 999999988886666554 677888888888888776
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=1.3e-10 Score=101.74 Aligned_cols=151 Identities=19% Similarity=0.228 Sum_probs=123.6
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh----------------cCccc--------chhhhhhHHHHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLEL----------------SQFES--------VSDSKKIINEAISKFE 66 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~----------------g~~~~--------~~~~~~~~~eAi~~le 66 (174)
+..|++|+..++...+.||-..+-.....+++.-. .+|++ =...+++.++|+..|+
T Consensus 275 ~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFk 354 (559)
T KOG1155|consen 275 QRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFK 354 (559)
T ss_pred hhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHH
Confidence 34788999999999999998766655555555432 22222 1123567899999999
Q ss_pred HHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHH
Q 030634 67 EALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQK 125 (174)
Q Consensus 67 kAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~ 125 (174)
+|+++||+...+|..+|.=|..+. +...|++.|++|++++|.+- .|++
T Consensus 355 RALkLNp~~~~aWTLmGHEyvEmK-----------Nt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 355 RALKLNPKYLSAWTLMGHEYVEMK-----------NTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHhcCcchhHHHHHhhHHHHHhc-----------ccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 999999999999999999999988 99999999999999999887 7899
Q ss_pred HHhcCCCChHHHHHHHHHHHhcccc---------CCC--CchhhHHHHHHHHHhhhcc
Q 030634 126 SLEVSTKAPELHMELHKHGINQQTL---------GGG--SSASSAQVNFCICVHQMKM 172 (174)
Q Consensus 126 Al~l~~~~~~~~~~l~~~~~~~~~~---------~~~--~~~~~~~~~~~~~~~~~~~ 172 (174)
|+++-|.++..+..||.||...+++ +.. -.-.++++-++-+-+++++
T Consensus 424 A~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d 481 (559)
T KOG1155|consen 424 ALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKD 481 (559)
T ss_pred HHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHh
Confidence 9999999999999999999999888 222 2345788888888777765
No 47
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.28 E-value=2.1e-10 Score=97.51 Aligned_cols=132 Identities=17% Similarity=0.188 Sum_probs=100.9
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch-----------------------------hhhhh
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-----------------------------DSKKI 57 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~-----------------------------~~~~~ 57 (174)
.|-++|.+++|++.++++++.+|.+..++..++.++...|+++.+. -..+.
T Consensus 116 ~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~ 195 (389)
T PRK11788 116 DYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGD 195 (389)
T ss_pred HHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCC
Confidence 3556677777777777777777777777777777776666653210 01245
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH----------------
Q 030634 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------- 121 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------- 121 (174)
+++|+..|+++++++|++..+++.+|.++...| ++++|+++|+++++.+|++.
T Consensus 196 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~ 264 (389)
T PRK11788 196 LDAARALLKKALAADPQCVRASILLGDLALAQG-----------DYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD 264 (389)
T ss_pred HHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence 699999999999999999999999999999988 99999999999999988763
Q ss_pred ------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 122 ------LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 122 ------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
.++++++..|+...+ ..++.++..+|..
T Consensus 265 ~~~A~~~l~~~~~~~p~~~~~-~~la~~~~~~g~~ 298 (389)
T PRK11788 265 EAEGLEFLRRALEEYPGADLL-LALAQLLEEQEGP 298 (389)
T ss_pred HHHHHHHHHHHHHhCCCchHH-HHHHHHHHHhCCH
Confidence 556677888876544 8888888888876
No 48
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=1.8e-11 Score=107.59 Aligned_cols=139 Identities=18% Similarity=0.168 Sum_probs=122.2
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
|.+.+|-..+.++++++|.++..+..+|.+|....+. ++-...|.+|..+||.+++.|+..|.++..++
T Consensus 340 g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~----------~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~- 408 (606)
T KOG0547|consen 340 GDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQS----------EKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQ- 408 (606)
T ss_pred CCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhcc----------HHHHHHHHHHHhcCCCCCchhHhHHHHHHHHH-
Confidence 4567788889999999999999999999999998888 99999999999999999999999999999988
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
+|++|+.-|++|++++|++. .|..+.+..|..|+.|.-.+.++..|+-.
T Consensus 409 ----------q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqF 478 (606)
T KOG0547|consen 409 ----------QYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQF 478 (606)
T ss_pred ----------HHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhH
Confidence 99999999999999999998 56788899999999999999999999887
Q ss_pred ---------CC--CCchhhHHHHHHHHHhhhc
Q 030634 151 ---------GG--GSSASSAQVNFCICVHQMK 171 (174)
Q Consensus 151 ---------~~--~~~~~~~~~~~~~~~~~~~ 171 (174)
++ +|.---.+||-+..||..-
T Consensus 479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~ 510 (606)
T KOG0547|consen 479 DKAVKQYDKAIELEPREHLIIVNAAPLVHKAL 510 (606)
T ss_pred HHHHHHHHHHHhhccccccccccchhhhhhhH
Confidence 22 3665556677777777643
No 49
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.26 E-value=7e-11 Score=91.16 Aligned_cols=103 Identities=19% Similarity=0.185 Sum_probs=85.7
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
+.+++.+++|+..+++++...|+. +.++.++|.++..+|++ ++|+..++++++++|++..++.++|.
T Consensus 45 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~----------~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 45 AQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEH----------DKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 567889999999999999987764 57999999999999999 99999999999999999999999999
Q ss_pred HHHhCCCC---ccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 85 AHTSCGFL---TADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 85 a~~~lG~~---~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
++..+|+. ......+...+++|+++++++++++|++
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 99998832 2334444455667777777777777765
No 50
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.25 E-value=1.4e-11 Score=109.67 Aligned_cols=119 Identities=18% Similarity=0.161 Sum_probs=97.3
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|-..+.|++|+++|+.|+..+|+|...|++||.++....+. ++||..|.+|+++-|....++||||..++
T Consensus 440 y~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s----------~EAIsAY~rALqLqP~yVR~RyNlgIS~m 509 (579)
T KOG1125|consen 440 YNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRS----------EEAISAYNRALQLQPGYVRVRYNLGISCM 509 (579)
T ss_pred HhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCccc----------HHHHHHHHHHHhcCCCeeeeehhhhhhhh
Confidence 45567999999999999999999999999999999998888 99999999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
.+| .|++|+++|-.||.+.+.+..-+++= -.....|..|-..++.-+|.
T Consensus 510 NlG-----------~ykEA~~hlL~AL~mq~ks~~~~~~~---~~se~iw~tLR~als~~~~~ 558 (579)
T KOG1125|consen 510 NLG-----------AYKEAVKHLLEALSMQRKSRNHNKAP---MASENIWQTLRLALSAMNRS 558 (579)
T ss_pred hhh-----------hHHHHHHHHHHHHHhhhcccccccCC---cchHHHHHHHHHHHHHcCCc
Confidence 999 99999999999999988743111110 00234555555555554443
No 51
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.24 E-value=4.3e-10 Score=95.61 Aligned_cols=131 Identities=12% Similarity=0.026 Sum_probs=96.5
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch----------------------------hhhhhHHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS----------------------------DSKKIINE 60 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~----------------------------~~~~~~~e 60 (174)
-..+.+++|+..++++++.+|+++.++..+|.++...|++..+. ...|.+++
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 125 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDR 125 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHH
Confidence 34567889999999999999999999999999998888873210 01245567
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-------------------
Q 030634 61 AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------- 121 (174)
Q Consensus 61 Ai~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------------- 121 (174)
|+..|+++++.+|.+..++..++.++...| ++++|++.++++++.+|.+.
T Consensus 126 A~~~~~~~l~~~~~~~~~~~~la~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 194 (389)
T PRK11788 126 AEELFLQLVDEGDFAEGALQQLLEIYQQEK-----------DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARG 194 (389)
T ss_pred HHHHHHHHHcCCcchHHHHHHHHHHHHHhc-----------hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCC
Confidence 777777777777777777777777777766 77888888887777776541
Q ss_pred -------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 122 -------LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 122 -------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
.|+++++.+|..+..+..++.++..+|..
T Consensus 195 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~ 230 (389)
T PRK11788 195 DLDAARALLKKALAADPQCVRASILLGDLALAQGDY 230 (389)
T ss_pred CHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCH
Confidence 45666677777777777777777777766
No 52
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.23 E-value=1.1e-10 Score=102.59 Aligned_cols=133 Identities=24% Similarity=0.352 Sum_probs=107.4
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|-.+..-++-++.+.+|.++||++++.|++.|.+++-++++ ++|+.-|++++.++|.+.-++..++.+++
T Consensus 370 y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~----------e~A~aDF~Kai~L~pe~~~~~iQl~~a~Y 439 (606)
T KOG0547|consen 370 YADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQY----------EEAIADFQKAISLDPENAYAYIQLCCALY 439 (606)
T ss_pred HhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHH----------HHHHHHHHHHhhcChhhhHHHHHHHHHHH
Confidence 44555667778888888888888888888888888888887 88888888888888888888888888888
Q ss_pred hCCCCc-------------cch----------hhhhcCHHHHHHHHHHHHHhCCC------CH-----------------
Q 030634 88 SCGFLT-------------ADL----------SEAKGDFDKASECFQRAVDEEPT------NE----------------- 121 (174)
Q Consensus 88 ~lG~~~-------------~~~----------~~a~~~~~~Ai~~~~kAl~l~P~------~~----------------- 121 (174)
+++.+. |.+ -..+++|++|++.|++|+++.|. ++
T Consensus 440 r~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~ 519 (606)
T KOG0547|consen 440 RQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDI 519 (606)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhH
Confidence 877310 222 23467899999999999999999 43
Q ss_pred -----HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 122 -----LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 122 -----~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
..++|++++|+...++..|+.+-+-+|-.
T Consensus 520 ~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i 553 (606)
T KOG0547|consen 520 NQAENLLRKAIELDPKCEQAYETLAQFELQRGKI 553 (606)
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhH
Confidence 67899999999999999999887776654
No 53
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.23 E-value=3.2e-10 Score=106.02 Aligned_cols=114 Identities=15% Similarity=0.138 Sum_probs=59.6
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
|.+++|++.+.++...+|..+.++..+|.++...|++ ++|+..|+++++++|+++.++..+|.++...|
T Consensus 29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g- 97 (765)
T PRK10049 29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQW----------QNSLTLWQKALSLEPQNDDYQRGLILTLADAG- 97 (765)
T ss_pred CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC-
Confidence 4455555555555555555555555555555555555 55555555555555555555555555555544
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHhcCCCChHHHHHHHHHHHh
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELHKHGIN 146 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------------~y~~Al~l~~~~~~~~~~l~~~~~~ 146 (174)
++++|+.+++++++.+|++. .+++++++.|+.+.++..++.++..
T Consensus 98 ----------~~~eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~ 162 (765)
T PRK10049 98 ----------QYDEALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRN 162 (765)
T ss_pred ----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 55555555555555555543 3444445555555555555554443
No 54
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.19 E-value=6.5e-11 Score=97.50 Aligned_cols=94 Identities=18% Similarity=0.267 Sum_probs=84.1
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
-+.++|..++|++.++++++.+|++++++..++.+++..|++ +++...++...+..|+++..|..+|.++
T Consensus 155 ~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~----------~~~~~~l~~~~~~~~~~~~~~~~la~~~ 224 (280)
T PF13429_consen 155 IYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDY----------DEAREALKRLLKAAPDDPDLWDALAAAY 224 (280)
T ss_dssp HHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHH----------HHHHHHHHHHHHH-HTSCCHCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCh----------HHHHHHHHHHHHHCcCHHHHHHHHHHHh
Confidence 367889999999999999999999999999999999998888 8889999888888899999999999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
..+| ++++|+.+|+++++.+|+++
T Consensus 225 ~~lg-----------~~~~Al~~~~~~~~~~p~d~ 248 (280)
T PF13429_consen 225 LQLG-----------RYEEALEYLEKALKLNPDDP 248 (280)
T ss_dssp HHHT------------HHHHHHHHHHHHHHSTT-H
T ss_pred cccc-----------cccccccccccccccccccc
Confidence 9999 99999999999999999999
No 55
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.19 E-value=5.1e-10 Score=91.64 Aligned_cols=87 Identities=22% Similarity=0.308 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
|.-++++....++...+|.+.+.+..+|..++..|++ .+|+..++++..++|+|+++|..+|.+|...|
T Consensus 80 G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~----------~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G- 148 (257)
T COG5010 80 GDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNF----------GEAVSVLRKAARLAPTDWEAWNLLGAALDQLG- 148 (257)
T ss_pred ccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcch----------HHHHHHHHHHhccCCCChhhhhHHHHHHHHcc-
Confidence 3333444444444444444444444444444444444 66666666666666666666666666666666
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~ 119 (174)
+++.|-..|.+++++.|+
T Consensus 149 ----------r~~~Ar~ay~qAl~L~~~ 166 (257)
T COG5010 149 ----------RFDEARRAYRQALELAPN 166 (257)
T ss_pred ----------ChhHHHHHHHHHHHhccC
Confidence 666666655554444444
No 56
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=99.18 E-value=5e-10 Score=92.85 Aligned_cols=98 Identities=13% Similarity=0.124 Sum_probs=90.0
Q ss_pred hhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC---CHHHHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---KHYTLWSLGN 84 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~---~~~a~~~LG~ 84 (174)
.+.|++|+..|+..+...|++ +.+++++|.+++..|++ ++|+..|+++++..|+ .+++++.+|.
T Consensus 156 ~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~----------~~A~~~f~~vv~~yP~s~~~~dAl~klg~ 225 (263)
T PRK10803 156 KSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKK----------DDAAYYFASVVKNYPKSPKAADAMFKVGV 225 (263)
T ss_pred cCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence 368999999999999999998 68999999999999999 9999999999999888 5788999999
Q ss_pred HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhc
Q 030634 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV 129 (174)
Q Consensus 85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l 129 (174)
++..+| ++++|+..|+++++..|++...++|.+.
T Consensus 226 ~~~~~g-----------~~~~A~~~~~~vi~~yP~s~~a~~A~~r 259 (263)
T PRK10803 226 IMQDKG-----------DTAKAKAVYQQVIKKYPGTDGAKQAQKR 259 (263)
T ss_pred HHHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 999998 9999999999999999999977776543
No 57
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.18 E-value=6e-10 Score=103.24 Aligned_cols=115 Identities=5% Similarity=-0.064 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCcc
Q 030634 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA 94 (174)
Q Consensus 15 ~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~ 94 (174)
.+++-.++......|.+++++.+||.+....|++ ++|...++.+++++|++..++.+++.++..++
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~La~i~~~~g~~----------~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~---- 134 (694)
T PRK15179 69 AAALPELLDYVRRYPHTELFQVLVARALEAAHRS----------DEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQ---- 134 (694)
T ss_pred HhhHHHHHHHHHhccccHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhc----
Confidence 3444555555667899999999999999999999 99999999999999999999999999999988
Q ss_pred chhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 95 DLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 95 ~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
++++|+..+++++..+|++. .|++++..+|+.+.++.+++..+...|+.
T Consensus 135 -------~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~ 204 (694)
T PRK15179 135 -------GIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGAL 204 (694)
T ss_pred -------cHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCH
Confidence 99999999999999999998 78999999999999999999999999988
No 58
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.18 E-value=1.8e-10 Score=101.89 Aligned_cols=102 Identities=23% Similarity=0.325 Sum_probs=91.4
Q ss_pred hhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 6 ~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a 85 (174)
.+|=+.+.|.+|++.|.+++..+|+|+..+.|.|.||..+|.+ ..|+...++++++||++..+|+.-|.+
T Consensus 366 ne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~----------~~aL~Da~~~ieL~p~~~kgy~RKg~a 435 (539)
T KOG0548|consen 366 NEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEY----------PEALKDAKKCIELDPNFIKAYLRKGAA 435 (539)
T ss_pred HHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 3556678899999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH----HHHHHHh
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----LYQKSLE 128 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~----~y~~Al~ 128 (174)
+..+. +|++|++.|++++++||++. .|+++.+
T Consensus 436 l~~mk-----------~ydkAleay~eale~dp~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 436 LRAMK-----------EYDKALEAYQEALELDPSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHH-----------HHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence 99877 99999999999999999988 4455443
No 59
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.17 E-value=2.7e-10 Score=99.91 Aligned_cols=70 Identities=21% Similarity=0.398 Sum_probs=67.2
Q ss_pred hCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHhCCCCccchhhhhcCH
Q 030634 27 KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT---LWSLGNAHTSCGFLTADLSEAKGDF 103 (174)
Q Consensus 27 ~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a---~~~LG~a~~~lG~~~~~~~~a~~~~ 103 (174)
.+|+++.+|+++|.+|..+|++ ++|+.+|++||+++|++.++ |+|+|.+|..+| ++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGry----------eEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LG-----------r~ 128 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRV----------KDALAQFETALELNPNPDEAQAAYYNKACCHAYRE-----------EG 128 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcC-----------CH
Confidence 5899999999999999999999 99999999999999999965 999999999999 99
Q ss_pred HHHHHHHHHHHHhC
Q 030634 104 DKASECFQRAVDEE 117 (174)
Q Consensus 104 ~~Ai~~~~kAl~l~ 117 (174)
++|+.++++|+++.
T Consensus 129 dEAla~LrrALels 142 (453)
T PLN03098 129 KKAADCLRTALRDY 142 (453)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999983
No 60
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.14 E-value=9.2e-10 Score=88.02 Aligned_cols=121 Identities=15% Similarity=0.115 Sum_probs=98.2
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHH---HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHH----
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDAD---NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL---- 79 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~---a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~---- 79 (174)
-|.+++.+++|+..++++++.+|+++. +++.+|.++..... ......+..++|+..|+++++.+|++..++
T Consensus 79 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~--~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~ 156 (235)
T TIGR03302 79 AYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQID--RVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKK 156 (235)
T ss_pred HHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcc--cccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHH
Confidence 356778999999999999999999887 79999999987611 111223445999999999999999997653
Q ss_pred -------------HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHh
Q 030634 80 -------------WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGIN 146 (174)
Q Consensus 80 -------------~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~ 146 (174)
+.+|.+|...| ++++|+..|+++++..|++ |..++++..++.++..
T Consensus 157 ~~~~~~~~~~~~~~~~a~~~~~~g-----------~~~~A~~~~~~al~~~p~~----------~~~~~a~~~l~~~~~~ 215 (235)
T TIGR03302 157 RMDYLRNRLAGKELYVARFYLKRG-----------AYVAAINRFETVVENYPDT----------PATEEALARLVEAYLK 215 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcC-----------ChHHHHHHHHHHHHHCCCC----------cchHHHHHHHHHHHHH
Confidence 45677788877 9999999999999999974 6667888888888888
Q ss_pred cccc
Q 030634 147 QQTL 150 (174)
Q Consensus 147 ~~~~ 150 (174)
.|..
T Consensus 216 lg~~ 219 (235)
T TIGR03302 216 LGLK 219 (235)
T ss_pred cCCH
Confidence 7765
No 61
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.14 E-value=1.4e-09 Score=89.07 Aligned_cols=116 Identities=22% Similarity=0.191 Sum_probs=100.4
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
++..+.+++|+++|...++-||.|..++-+.-.+.-.+|+. .+||+.+.+-++..|.|+++|..|+.+|.
T Consensus 96 lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~----------l~aIk~ln~YL~~F~~D~EAW~eLaeiY~ 165 (289)
T KOG3060|consen 96 LEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKN----------LEAIKELNEYLDKFMNDQEAWHELAEIYL 165 (289)
T ss_pred HHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 56778999999999999999999999988888888888887 89999999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHhcCCCChHHHHHHHHH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHMELHKH 143 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------------------~y~~Al~l~~~~~~~~~~l~~~ 143 (174)
..| +|++|..|+++.+-++|-++ .|.++++++|+.-...+.+..+
T Consensus 166 ~~~-----------~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 166 SEG-----------DFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred hHh-----------HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHH
Confidence 988 99999999999999999888 6778888888666655555444
Q ss_pred H
Q 030634 144 G 144 (174)
Q Consensus 144 ~ 144 (174)
+
T Consensus 235 ~ 235 (289)
T KOG3060|consen 235 G 235 (289)
T ss_pred H
Confidence 3
No 62
>PRK15331 chaperone protein SicA; Provisional
Probab=99.14 E-value=5.4e-10 Score=86.34 Aligned_cols=93 Identities=14% Similarity=0.115 Sum_probs=88.3
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
++-++|++++|.+.|+-.+..+|.+++.|..||.++..++++ ++|+..|-.|..++++||...|..|.||
T Consensus 46 ~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y----------~~Ai~~Y~~A~~l~~~dp~p~f~agqC~ 115 (165)
T PRK15331 46 EFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQF----------QKACDLYAVAFTLLKNDYRPVFFTGQCQ 115 (165)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHcccCCCCccchHHHHH
Confidence 355789999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
..+| +.++|..+|..+++ +|.+.
T Consensus 116 l~l~-----------~~~~A~~~f~~a~~-~~~~~ 138 (165)
T PRK15331 116 LLMR-----------KAAKARQCFELVNE-RTEDE 138 (165)
T ss_pred HHhC-----------CHHHHHHHHHHHHh-CcchH
Confidence 9999 99999999999999 67776
No 63
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.14 E-value=1.1e-09 Score=92.82 Aligned_cols=116 Identities=17% Similarity=0.250 Sum_probs=100.9
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|=|+|.+.+|.+.++.++...| .++.+..|+.+|....++ ..|+..+.+.+...|.+...+...+.++.
T Consensus 233 ylrLgm~r~AekqlqssL~q~~-~~dTfllLskvY~ridQP----------~~AL~~~~~gld~fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 233 YLRLGMPRRAEKQLQSSLTQFP-HPDTFLLLSKVYQRIDQP----------ERALLVIGEGLDSFPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHhcChhhhHHHHHHHhhcCC-chhHHHHHHHHHHHhccH----------HHHHHHHhhhhhcCCchhhhhhhhHHHHH
Confidence 6688899999999999988776 578888899999998888 89999999999999999998888888888
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~ 145 (174)
.++ ++++|+++|+.+++++|.|. .||+.|++--.+|++|.|+|-|-+
T Consensus 302 am~-----------~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 302 AME-----------QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred HHH-----------hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 877 99999999999999999887 788888888888888888887643
No 64
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.13 E-value=4.5e-10 Score=102.76 Aligned_cols=93 Identities=30% Similarity=0.385 Sum_probs=87.0
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHH--HHHHHHHhCCCCHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAIS--KFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~--~lekAl~ldP~~~~a~~~LG~a 85 (174)
+.+.+.++||...|..|+.+||+++.+...+|.++.+.|+. .-|.. .+..++++||.++++|+.||.+
T Consensus 694 ~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~----------~la~~~~~L~dalr~dp~n~eaW~~LG~v 763 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSP----------RLAEKRSLLSDALRLDPLNHEAWYYLGEV 763 (799)
T ss_pred HHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCc----------chHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 46678999999999999999999999999999999999987 55555 9999999999999999999999
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+..+| +.++|.+||+.|+++++.++
T Consensus 764 ~k~~G-----------d~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 764 FKKLG-----------DSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHHcc-----------chHHHHHHHHHHHhhccCCC
Confidence 99999 99999999999999999876
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.12 E-value=3.1e-10 Score=91.76 Aligned_cols=94 Identities=26% Similarity=0.344 Sum_probs=88.2
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGN 84 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l--dP~~~~a~~~LG~ 84 (174)
-|.++|..+-|.+.|++|++++|++.++++|.|.-+...|++ ++|...|++|+.. .|.-+..|-|+|.
T Consensus 78 ~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~----------~eA~q~F~~Al~~P~Y~~~s~t~eN~G~ 147 (250)
T COG3063 78 YYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP----------EEAMQQFERALADPAYGEPSDTLENLGL 147 (250)
T ss_pred HHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh----------HHHHHHHHHHHhCCCCCCcchhhhhhHH
Confidence 377899999999999999999999999999999999999999 9999999999974 4556789999999
Q ss_pred HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
|-++.| +++.|.++|+++|+++|+++
T Consensus 148 Cal~~g-----------q~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 148 CALKAG-----------QFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred HHhhcC-----------CchhHHHHHHHHHHhCcCCC
Confidence 999999 99999999999999999998
No 66
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=99.12 E-value=9.4e-10 Score=90.10 Aligned_cols=107 Identities=20% Similarity=0.149 Sum_probs=95.2
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
+.|.|.+|+..++++..++|+|+++|..+|.+|.+.|++ ++|...|.+++++.|+++.+..|||..|...
T Consensus 112 ~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~----------~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 112 RNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRF----------DEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccCh----------hHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 567999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
| +++.|..++.++...-|.+ +....||+.+...||++
T Consensus 182 g-----------d~~~A~~lll~a~l~~~ad-------------~~v~~NLAl~~~~~g~~ 218 (257)
T COG5010 182 G-----------DLEDAETLLLPAYLSPAAD-------------SRVRQNLALVVGLQGDF 218 (257)
T ss_pred C-----------CHHHHHHHHHHHHhCCCCc-------------hHHHHHHHHHHhhcCCh
Confidence 8 9999999999876665544 44555666666666666
No 67
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.09 E-value=1.7e-09 Score=101.08 Aligned_cols=93 Identities=16% Similarity=0.198 Sum_probs=89.8
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
-+..++.+++|+..++++++.+|.++.++..+|.++...|++ ++|+..++++++.+|+++. ++.+|.++
T Consensus 58 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~----------~eA~~~l~~~l~~~P~~~~-~~~la~~l 126 (765)
T PRK10049 58 AYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQY----------DEALVKAKQLVSGAPDKAN-LLALAYVY 126 (765)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 367788999999999999999999999999999999999999 9999999999999999999 99999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
...| ++++|+..++++++++|++.
T Consensus 127 ~~~g-----------~~~~Al~~l~~al~~~P~~~ 150 (765)
T PRK10049 127 KRAG-----------RHWDELRAMTQALPRAPQTQ 150 (765)
T ss_pred HHCC-----------CHHHHHHHHHHHHHhCCCCH
Confidence 9999 99999999999999999998
No 68
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.08 E-value=4.4e-10 Score=73.60 Aligned_cols=57 Identities=30% Similarity=0.367 Sum_probs=54.2
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhc-CcccchhhhhhHHHHHHHHHHHHHhCC
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELS-QFESVSDSKKIINEAISKFEEALVIDP 73 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g-~~~~~~~~~~~~~eAi~~lekAl~ldP 73 (174)
.|-++++|++|+..|.++++++|+++.+|+++|.++..+| ++ ++|+..+++++++||
T Consensus 12 ~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~----------~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 12 IYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDY----------EEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHH----------HHHHHHHHHHHHHST
T ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccH----------HHHHHHHHHHHHcCc
Confidence 3567899999999999999999999999999999999999 68 999999999999999
No 69
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.07 E-value=5e-10 Score=72.67 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=54.6
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~ 76 (174)
+-+.|+|++|++.++++++.+|+++++|+.+|.++..+|++ ++|+..|+++++++|+++
T Consensus 7 ~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRY----------DEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTT-H
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCC
Confidence 45678999999999999999999999999999999999999 999999999999999986
No 70
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.07 E-value=5.4e-10 Score=94.77 Aligned_cols=142 Identities=13% Similarity=0.161 Sum_probs=87.0
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|-|...-+.|+..+.+.++..|.+...+...++++..+++. ++|++.|+.+++++|.+.++.-.+|.-|+
T Consensus 266 Y~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~----------~~a~~lYk~vlk~~~~nvEaiAcia~~yf 335 (478)
T KOG1129|consen 266 YQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQ----------EDALQLYKLVLKLHPINVEAIACIAVGYF 335 (478)
T ss_pred HHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhH----------HHHHHHHHHHHhcCCccceeeeeeeeccc
Confidence 55555666677777777777777777777777777777666 66666666666666666666666666666
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCC---CChHHHHHHHHH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVST---KAPELHMELHKH 143 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~---~~~~~~~~l~~~ 143 (174)
.-| +.+-|+.+|++.|..--.++ .|.+|+.... +..+.|+|||-+
T Consensus 336 Y~~-----------~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~v 404 (478)
T KOG1129|consen 336 YDN-----------NPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFV 404 (478)
T ss_pred cCC-----------ChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhcccee
Confidence 655 66666666666666554444 4455554432 234466666655
Q ss_pred HHhcccc-----------CCCCchhhHHHHHHHHHhhh
Q 030634 144 GINQQTL-----------GGGSSASSAQVNFCICVHQM 170 (174)
Q Consensus 144 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 170 (174)
....|-. ...+.-+++++|++|+-||-
T Consensus 405 aV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~ 442 (478)
T KOG1129|consen 405 AVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARS 442 (478)
T ss_pred EEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhc
Confidence 5555543 22255566666666666554
No 71
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.06 E-value=2.4e-09 Score=92.03 Aligned_cols=90 Identities=14% Similarity=0.214 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (174)
Q Consensus 35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl 114 (174)
+...|...+..|++ ++|+.+|++|++++|+++.+|+++|.+|..+| ++++|+..+++++
T Consensus 5 l~~~a~~a~~~~~~----------~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g-----------~~~eAl~~~~~Al 63 (356)
T PLN03088 5 LEDKAKEAFVDDDF----------ALAVDLYTQAIDLDPNNAELYADRAQANIKLG-----------NFTEAVADANKAI 63 (356)
T ss_pred HHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHH
Confidence 55668888888888 99999999999999999999999999999999 9999999999999
Q ss_pred HhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHH
Q 030634 115 DEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (174)
Q Consensus 115 ~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~ 145 (174)
+++|++. .|+++++++|..+.++..++.+..
T Consensus 64 ~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~ 115 (356)
T PLN03088 64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDE 115 (356)
T ss_pred HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9999987 678888999999998888887733
No 72
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.05 E-value=2e-09 Score=91.82 Aligned_cols=119 Identities=17% Similarity=0.188 Sum_probs=110.6
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG 90 (174)
-+.+..|+..|-.|++.||++..++++.|.+|+.+|+. +-|+.-+.++|++.|+...|....|.+++++|
T Consensus 51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGks----------k~al~Dl~rVlelKpDF~~ARiQRg~vllK~G 120 (504)
T KOG0624|consen 51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKS----------KAALQDLSRVLELKPDFMAARIQRGVVLLKQG 120 (504)
T ss_pred hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCC----------ccchhhHHHHHhcCccHHHHHHHhchhhhhcc
Confidence 45788999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred CCccchhhhhcCHHHHHHHHHHHHHhCCCCH------------------------------------HHHHHHhcCCCCh
Q 030634 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------------------------LYQKSLEVSTKAP 134 (174)
Q Consensus 91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------------------------------~y~~Al~l~~~~~ 134 (174)
.+++|..-|++.|.-+|++. .....|++.|=+.
T Consensus 121 -----------ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda 189 (504)
T KOG0624|consen 121 -----------ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDA 189 (504)
T ss_pred -----------cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchh
Confidence 99999999999999999776 3456678888889
Q ss_pred HHHHHHHHHHHhcccc
Q 030634 135 ELHMELHKHGINQQTL 150 (174)
Q Consensus 135 ~~~~~l~~~~~~~~~~ 150 (174)
.++..-+.|++.-|-+
T Consensus 190 ~l~~~Rakc~i~~~e~ 205 (504)
T KOG0624|consen 190 SLRQARAKCYIAEGEP 205 (504)
T ss_pred HHHHHHHHHHHhcCcH
Confidence 9999999999998877
No 73
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.4e-09 Score=87.72 Aligned_cols=96 Identities=21% Similarity=0.201 Sum_probs=66.6
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|=+++++..|...|.+|+++.|++++.+..+|.++..+..- .+..++...|++++++||.+..+.+.||..++
T Consensus 166 ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~-------~~ta~a~~ll~~al~~D~~~iral~lLA~~af 238 (287)
T COG4235 166 YMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQ-------QMTAKARALLRQALALDPANIRALSLLAFAAF 238 (287)
T ss_pred HHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCC-------cccHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 44566777777777777777777777777777776665442 23367777777777777777777777777777
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
..| +|.+|+..+++.++..|.+.
T Consensus 239 e~g-----------~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 239 EQG-----------DYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred Hcc-----------cHHHHHHHHHHHHhcCCCCC
Confidence 766 77777777777777776655
No 74
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=4.8e-09 Score=92.99 Aligned_cols=118 Identities=19% Similarity=0.250 Sum_probs=106.1
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
.++...+++++.....--++|.-++---..|+.++..|+| .+|+.+|.+||+.+|+|+..|-|++.||..
T Consensus 335 s~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy----------~~Av~~YteAIkr~P~Da~lYsNRAac~~k 404 (539)
T KOG0548|consen 335 SKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDY----------PEAVKHYTEAIKRDPEDARLYSNRAACYLK 404 (539)
T ss_pred HHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCH----------HHHHHHHHHHHhcCCchhHHHHHHHHHHHH
Confidence 4556677777777777777888777777788888888888 999999999999999999999999999999
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhc
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQ 147 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~ 147 (174)
+| .+..|+...++++++||+.. .|.++++++|+..++-..+.+|+..|
T Consensus 405 L~-----------~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 405 LG-----------EYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred Hh-----------hHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence 99 99999999999999999998 78899999999999999999999877
No 75
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.02 E-value=2.1e-09 Score=89.67 Aligned_cols=82 Identities=22% Similarity=0.346 Sum_probs=74.4
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------
Q 030634 56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------- 121 (174)
Q Consensus 56 ~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-------------- 121 (174)
+.|++|+..|.+||+++|+|+-.|-|.+.+|.++| .|+.|++-.+.||.+||.+.
T Consensus 95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg-----------~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~g 163 (304)
T KOG0553|consen 95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLG-----------EYEDAVKDCESALSIDPHYSKAYGRLGLAYLALG 163 (304)
T ss_pred hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhc-----------chHHHHHHHHHHHhcChHHHHHHHHHHHHHHccC
Confidence 44699999999999999999999999999999999 99999999999999999987
Q ss_pred -------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634 122 -------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (174)
Q Consensus 122 -------~y~~Al~l~~~~~~~~~~l~~~~~~~~ 148 (174)
.|++||+++|..+.+..+|...-..+.
T Consensus 164 k~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~ 197 (304)
T KOG0553|consen 164 KYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN 197 (304)
T ss_pred cHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence 789999999999998888876544433
No 76
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.02 E-value=2.1e-09 Score=71.01 Aligned_cols=68 Identities=21% Similarity=0.296 Sum_probs=61.2
Q ss_pred HHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634 39 GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (174)
Q Consensus 39 g~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P 118 (174)
..++...+++ ++|+.+++++++++|+++.+|+.+|.++..+| ++++|+..++++++.+|
T Consensus 2 ~~~~~~~~~~----------~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g-----------~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDY----------EEALEVLERALELDPDDPELWLQRARCLFQLG-----------RYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCH----------HHHHHHHHHHHHhCcccchhhHHHHHHHHHhc-----------cHHHHHHHHHHHHHHCC
Confidence 4567777777 99999999999999999999999999999999 99999999999999999
Q ss_pred CCHHHHHHH
Q 030634 119 TNELYQKSL 127 (174)
Q Consensus 119 ~~~~y~~Al 127 (174)
++.......
T Consensus 61 ~~~~~~~~~ 69 (73)
T PF13371_consen 61 DDPDARALR 69 (73)
T ss_pred CcHHHHHHH
Confidence 988555443
No 77
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.02 E-value=1.2e-09 Score=71.18 Aligned_cols=65 Identities=17% Similarity=0.150 Sum_probs=60.4
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
..|.|++|++.+++++..+|+++++++.+|.+++..|++ ++|...+++++..+|+++.++..++.
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~----------~~A~~~l~~~~~~~~~~~~~~~l~a~ 67 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQY----------DEAEELLERLLKQDPDNPEYQQLLAQ 67 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-H----------HHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence 468999999999999999999999999999999999999 99999999999999999988877765
No 78
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=99.01 E-value=1.1e-09 Score=71.34 Aligned_cols=60 Identities=30% Similarity=0.424 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634 57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (174)
Q Consensus 57 ~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al 127 (174)
.+++|+..|+++++.+|+++.+++.+|.+|...| ++++|...+++++..+|+++.+...+
T Consensus 6 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g-----------~~~~A~~~l~~~~~~~~~~~~~~~l~ 65 (68)
T PF14559_consen 6 DYDEAIELLEKALQRNPDNPEARLLLAQCYLKQG-----------QYDEAEELLERLLKQDPDNPEYQQLL 65 (68)
T ss_dssp HHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT------------HHHHHHHHHCCHGGGTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3499999999999999999999999999999999 99999999999999999988776654
No 79
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=5.3e-09 Score=90.28 Aligned_cols=96 Identities=24% Similarity=0.302 Sum_probs=85.2
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCC----CCH-----------HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDP----LDA-----------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P----~~~-----------~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l 71 (174)
.|=+.++|..|...|+++++.=+ .+. .++.|++.|+++++++ .+|+....++|.+
T Consensus 217 ~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~----------~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 217 VLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEY----------KEAIESCNKVLEL 286 (397)
T ss_pred HHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhH----------HHHHHHHHHHHhc
Confidence 45577899999999999888522 222 2789999999999999 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHH
Q 030634 72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123 (174)
Q Consensus 72 dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y 123 (174)
+|+|..++|..|.++..+| +|+.|+..|+++++++|+|...
T Consensus 287 ~~~N~KALyRrG~A~l~~~-----------e~~~A~~df~ka~k~~P~Nka~ 327 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALG-----------EYDLARDDFQKALKLEPSNKAA 327 (397)
T ss_pred CCCchhHHHHHHHHHHhhc-----------cHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999999999999 9999999999999999999833
No 80
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.4e-08 Score=90.59 Aligned_cols=132 Identities=19% Similarity=0.205 Sum_probs=86.5
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchh------------------------hhhhHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAIS 63 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~------------------------~~~~~~eAi~ 63 (174)
|.+.+++.+|++.+.++..+||....+|...|..+...|+.+++.. ..+.++-|..
T Consensus 322 Yl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~ 401 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEK 401 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHH
Confidence 6677889999999999999999999999999999888888732110 1223455555
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh----CCCCH------------------
Q 030634 64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE----EPTNE------------------ 121 (174)
Q Consensus 64 ~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l----~P~~~------------------ 121 (174)
.|.+|+.+.|.||-.+..+|.+.+.-+ .|.+|+.+|++++.. +++..
T Consensus 402 Ff~~A~ai~P~Dplv~~Elgvvay~~~-----------~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~ 470 (611)
T KOG1173|consen 402 FFKQALAIAPSDPLVLHELGVVAYTYE-----------EYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNK 470 (611)
T ss_pred HHHHHHhcCCCcchhhhhhhheeehHh-----------hhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhh
Confidence 555555555555555555555554433 566666666666621 11110
Q ss_pred ------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 122 ------LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 122 ------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
.|+++|.++|+++.+|..+|-++.-+|-+
T Consensus 471 ~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 471 YEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred HHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence 66777788888888887777777777665
No 81
>PRK11906 transcriptional regulator; Provisional
Probab=98.99 E-value=6.8e-09 Score=91.27 Aligned_cols=111 Identities=12% Similarity=0.046 Sum_probs=95.4
Q ss_pred hHHHHHHHHHHHH---hhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 13 LSEHNRKTAEANY---AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 13 ~~~eAl~~~~~al---~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
..++|+..+.+++ .++|..+.++..++.|+....-.++.. ......+|+.+.++|+++||.|+.+++.+|.++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~-~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSE-LELAAQKALELLDYVSDITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhh
Confidence 4578999999999 999999999999999998764433333 455668999999999999999999999999999998
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChH
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPE 135 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~ 135 (174)
| +++.|+..|++|+.++|+.+ ..++|++++|.-..
T Consensus 352 ~-----------~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~ 407 (458)
T PRK11906 352 G-----------QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRK 407 (458)
T ss_pred c-----------chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhH
Confidence 8 89999999999999999998 56778888776543
No 82
>PRK11906 transcriptional regulator; Provisional
Probab=98.99 E-value=4.4e-09 Score=92.49 Aligned_cols=91 Identities=14% Similarity=0.092 Sum_probs=85.7
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
.-..-.+|++.+++|++++|.|+.++..+|.++...+++ +.|+..|++|+.++|+.+.+|+..|.+....
T Consensus 316 ~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~----------~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~ 385 (458)
T PRK11906 316 LELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQA----------KVSHILFEQAKIHSTDIASLYYYRALVHFHN 385 (458)
T ss_pred chHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcch----------hhHHHHHHHHhhcCCccHHHHHHHHHHHHHc
Confidence 344667899999999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
| +.++|++++++|++++|--.
T Consensus 386 G-----------~~~~a~~~i~~alrLsP~~~ 406 (458)
T PRK11906 386 E-----------KIEEARICIDKSLQLEPRRR 406 (458)
T ss_pred C-----------CHHHHHHHHHHHhccCchhh
Confidence 9 99999999999999999654
No 83
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.98 E-value=3.4e-09 Score=94.54 Aligned_cols=110 Identities=23% Similarity=0.280 Sum_probs=82.9
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccc-------------------------------hhhh
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESV-------------------------------SDSK 55 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~-------------------------------~~~~ 55 (174)
.|-+++.++-|.+.+..|+.+.|+||-.+.-+|++.+..+.+..+ .-..
T Consensus 389 ey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl 468 (611)
T KOG1173|consen 389 EYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL 468 (611)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH
Confidence 356667777777777777777777777777776665544444210 0113
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634 56 KIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (174)
Q Consensus 56 ~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al 127 (174)
+.+++||..|+++|.+.|++++++-.+|.+|..+| ++++|+++|.|||.++|++......|
T Consensus 469 ~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg-----------nld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 469 NKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG-----------NLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred hhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc-----------ChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 45699999999999999999999999999999988 99999999999999999997444333
No 84
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.96 E-value=9.1e-09 Score=78.85 Aligned_cols=102 Identities=19% Similarity=0.189 Sum_probs=82.6
Q ss_pred hHHHHHHHHHHHHhhCCCC--HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHH
Q 030634 13 LSEHNRKTAEANYAKDPLD--ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHT 87 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~--~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG~a~~ 87 (174)
-|.++...+...++.++.+ ..+++++|.++...|++ ++|+..|++++.+.|+. +.+|+++|.++.
T Consensus 14 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~----------~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~ 83 (168)
T CHL00033 14 TFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEY----------AEALQNYYEAMRLEIDPYDRSYILYNIGLIHT 83 (168)
T ss_pred ccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence 3666777776666777776 77789999999999999 99999999999998774 458999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQ 148 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~ 148 (174)
..| ++++|+.+|+++++++|.+. ..+.+++.++..++
T Consensus 84 ~~g-----------~~~eA~~~~~~Al~~~~~~~-------------~~~~~la~i~~~~~ 120 (168)
T CHL00033 84 SNG-----------EHTKALEYYFQALERNPFLP-------------QALNNMAVICHYRG 120 (168)
T ss_pred HcC-----------CHHHHHHHHHHHHHhCcCcH-------------HHHHHHHHHHHHhh
Confidence 999 99999999999888877654 44555555555444
No 85
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.96 E-value=1e-08 Score=95.30 Aligned_cols=89 Identities=18% Similarity=0.233 Sum_probs=65.5
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
|++++|.+.+.++++++|.++.+|+.||.+|-..|+. +++...+-.|--++|++.+-|..++.....+|
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~----------eK~l~~~llAAHL~p~d~e~W~~ladls~~~~- 221 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDI----------EKALNFWLLAAHLNPKDYELWKRLADLSEQLG- 221 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccH----------HHHHHHHHHHHhcCCCChHHHHHHHHHHHhcc-
Confidence 8999999999999999999999999999999999988 55555555555555555555555555555555
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
++++|.-||.|||+.+|.+.
T Consensus 222 ----------~i~qA~~cy~rAI~~~p~n~ 241 (895)
T KOG2076|consen 222 ----------NINQARYCYSRAIQANPSNW 241 (895)
T ss_pred ----------cHHHHHHHHHHHHhcCCcch
Confidence 55555555555555555554
No 86
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.95 E-value=1.2e-08 Score=72.13 Aligned_cols=87 Identities=21% Similarity=0.282 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHH
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~ 108 (174)
+++++.+|..+...|++ ++|+..|+++++.+|++ +.+++.+|.++...| ++++|+.
T Consensus 2 ~~~~~~~~~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----------~~~~A~~ 60 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDY----------ADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQG-----------KYADAAK 60 (119)
T ss_pred cHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhc-----------cHHHHHH
Confidence 57889999999999999 99999999999999987 578999999999998 9999999
Q ss_pred HHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhccc
Q 030634 109 CFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT 149 (174)
Q Consensus 109 ~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~ 149 (174)
+|++++..+|++. ..+..+..++.++..++.
T Consensus 61 ~~~~~~~~~p~~~----------~~~~~~~~~~~~~~~~~~ 91 (119)
T TIGR02795 61 AFLAVVKKYPKSP----------KAPDALLKLGMSLQELGD 91 (119)
T ss_pred HHHHHHHHCCCCC----------cccHHHHHHHHHHHHhCC
Confidence 9999999998753 124445555555554443
No 87
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.95 E-value=2.8e-08 Score=93.74 Aligned_cols=91 Identities=18% Similarity=0.139 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
|.|.+.+|+..++++++.+|+++.+..-+..++...|+. ++|+..+++++.-+|........+|.++...
T Consensus 46 r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~----------~~A~~~~eka~~p~n~~~~~llalA~ly~~~ 115 (822)
T PRK14574 46 RAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRD----------QEVIDVYERYQSSMNISSRGLASAARAYRNE 115 (822)
T ss_pred hCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCc----------HHHHHHHHHhccCCCCCHHHHHHHHHHHHHc
Confidence 566788888999999888888864444777777777776 5555555555522233333333335555555
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
| ++++|++.|+++++++|+++
T Consensus 116 g-----------dyd~Aiely~kaL~~dP~n~ 136 (822)
T PRK14574 116 K-----------RWDQALALWQSSLKKDPTNP 136 (822)
T ss_pred C-----------CHHHHHHHHHHHHhhCCCCH
Confidence 5 55555555555555555555
No 88
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.94 E-value=2.8e-08 Score=73.25 Aligned_cols=100 Identities=22% Similarity=0.172 Sum_probs=89.1
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC---CHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA---KHYTLW 80 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~---~~~a~~ 80 (174)
-+|.+|+.++|+..|++++...+.. ..++..+|.++..+|++ ++|+..+++++...|+ +.....
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~----------deA~~~L~~~~~~~p~~~~~~~l~~ 79 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRY----------DEALALLEEALEEFPDDELNAALRV 79 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCccccHHHHH
Confidence 5789999999999999999986555 56899999999999999 9999999999999898 888889
Q ss_pred HHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhc
Q 030634 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEV 129 (174)
Q Consensus 81 ~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l 129 (174)
.++.++..+| ++++|+..+-.++. |....|++++..
T Consensus 80 f~Al~L~~~g-----------r~~eAl~~~l~~la--~~~~~y~ra~~~ 115 (120)
T PF12688_consen 80 FLALALYNLG-----------RPKEALEWLLEALA--ETLPRYRRAIRF 115 (120)
T ss_pred HHHHHHHHCC-----------CHHHHHHHHHHHHH--HHHHHHHHHHHH
Confidence 9999999999 99999999998886 444488888865
No 89
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.93 E-value=1.1e-08 Score=66.78 Aligned_cols=82 Identities=23% Similarity=0.401 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (174)
Q Consensus 34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA 113 (174)
+++.+|.++...|++ ++|+..++++++..|+++.+++.+|.++...| ++++|+.+++++
T Consensus 2 ~~~~~a~~~~~~~~~----------~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~a~~~~~~~ 60 (100)
T cd00189 2 ALLNLGNLYYKLGDY----------DEALEYYEKALELDPDNADAYYNLAAAYYKLG-----------KYEEALEDYEKA 60 (100)
T ss_pred HHHHHHHHHHHHhcH----------HHHHHHHHHHHhcCCccHHHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 578899999999998 99999999999999999999999999999988 999999999998
Q ss_pred HHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhccc
Q 030634 114 VDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT 149 (174)
Q Consensus 114 l~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~ 149 (174)
++..|.+. ..+..++.++..++.
T Consensus 61 ~~~~~~~~-------------~~~~~~~~~~~~~~~ 83 (100)
T cd00189 61 LELDPDNA-------------KAYYNLGLAYYKLGK 83 (100)
T ss_pred HhCCCcch-------------hHHHHHHHHHHHHHh
Confidence 88888655 455555555555544
No 90
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.92 E-value=2e-08 Score=94.68 Aligned_cols=118 Identities=9% Similarity=0.073 Sum_probs=83.3
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
.+|.+++|+..+++++.-+|.....+..+|.++..+|++ ++|+..|+++++++|+++.+++.++.++...
T Consensus 80 ~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdy----------d~Aiely~kaL~~dP~n~~~l~gLa~~y~~~ 149 (822)
T PRK14574 80 WAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRW----------DQALALWQSSLKKDPTNPDLISGMIMTQADA 149 (822)
T ss_pred HcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCHHHHHHHHHHHhhc
Confidence 456777888888888744455555555557777777777 7888888888888888888877777777777
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~ 148 (174)
| +.++|++.+++++..+|++. .|+++++.+|..++++..+..++...|
T Consensus 150 ~-----------q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~ 217 (822)
T PRK14574 150 G-----------RGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNR 217 (822)
T ss_pred C-----------CHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 7 77777777777777777765 455666666776666666665554444
No 91
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.91 E-value=3.5e-08 Score=88.85 Aligned_cols=94 Identities=12% Similarity=0.014 Sum_probs=61.0
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCC
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l--dP~~~~a~~~LG~a~~~lG 90 (174)
.+.+|+.++++|++++|+++.++..++.++.....+.. .....+..+....++++.+ +|.++.+|..+|.++...|
T Consensus 357 ~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~--~~~~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g 434 (517)
T PRK10153 357 SLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQP--LDEKQLAALSTELDNIVALPELNVLPRIYEILAVQALVKG 434 (517)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcC
Confidence 57799999999999999999999999988866544422 1112334455555554443 5555555555555555555
Q ss_pred CCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634 91 FLTADLSEAKGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~ 119 (174)
++++|..++++|++++|+
T Consensus 435 -----------~~~~A~~~l~rAl~L~ps 452 (517)
T PRK10153 435 -----------KTDEAYQAINKAIDLEMS 452 (517)
T ss_pred -----------CHHHHHHHHHHHHHcCCC
Confidence 666666666666666653
No 92
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=2.8e-08 Score=82.97 Aligned_cols=90 Identities=21% Similarity=0.240 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCc
Q 030634 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT 93 (174)
Q Consensus 14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~ 93 (174)
.++.+..++..+..||+|++-|..||.+|+.+|++ ..|...|.+|+++.|++++.+..+|.+++...
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~----------~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a--- 204 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRA----------SDALLAYRNALRLAGDNPEILLGLAEALYYQA--- 204 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcch----------hHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---
Confidence 45667778889999999999999999999999999 99999999999999999999999999987654
Q ss_pred cchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 94 ADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 94 ~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
......++...+++++++||++.
T Consensus 205 -----~~~~ta~a~~ll~~al~~D~~~i 227 (287)
T COG4235 205 -----GQQMTAKARALLRQALALDPANI 227 (287)
T ss_pred -----CCcccHHHHHHHHHHHhcCCccH
Confidence 13357899999999999999988
No 93
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.89 E-value=2.4e-08 Score=77.00 Aligned_cols=73 Identities=27% Similarity=0.427 Sum_probs=65.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCccchhhhhcCHH
Q 030634 28 DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFD 104 (174)
Q Consensus 28 ~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG~a~~~lG~~~~~~~~a~~~~~ 104 (174)
+|..+.+++++|..+...|++ ++|+.+|+++++++|+. +.+++++|.++..+| +++
T Consensus 31 ~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g-----------~~~ 89 (172)
T PRK02603 31 KAKEAFVYYRDGMSAQADGEY----------AEALENYEEALKLEEDPNDRSYILYNMGIIYASNG-----------EHD 89 (172)
T ss_pred HhhhHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcC-----------CHH
Confidence 446777899999999999999 99999999999998774 468999999999999 999
Q ss_pred HHHHHHHHHHHhCCCCH
Q 030634 105 KASECFQRAVDEEPTNE 121 (174)
Q Consensus 105 ~Ai~~~~kAl~l~P~~~ 121 (174)
+|+.+++++++++|++.
T Consensus 90 ~A~~~~~~al~~~p~~~ 106 (172)
T PRK02603 90 KALEYYHQALELNPKQP 106 (172)
T ss_pred HHHHHHHHHHHhCcccH
Confidence 99999999999988765
No 94
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=1.4e-08 Score=88.15 Aligned_cols=134 Identities=20% Similarity=0.189 Sum_probs=113.6
Q ss_pred hhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchh--------------------------------
Q 030634 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD-------------------------------- 53 (174)
Q Consensus 6 ~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~-------------------------------- 53 (174)
++|-.+..|.+|++.+..|++..|+++..|.+.+.+++.+++|+...-
T Consensus 57 n~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k~~~r~~~c~~a~~~~i~A 136 (486)
T KOG0550|consen 57 NAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSKGQLREGQCHLALSDLIEA 136 (486)
T ss_pred chHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccccccchhhhhhhhHHHHHH
Confidence 467788899999999999999999999999999999999888853110
Q ss_pred --------------------------------------------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 54 --------------------------------------------SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 54 --------------------------------------------~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
..+.+.+|+..--..+++|+.+.++++-.|.+++..
T Consensus 137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~ 216 (486)
T KOG0550|consen 137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYN 216 (486)
T ss_pred HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccc
Confidence 012345556666677889999999999999999998
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------------------HHHHHHhcCCCChH-
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------------LYQKSLEVSTKAPE- 135 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------------------~y~~Al~l~~~~~~- 135 (174)
+ +.++|+.+|+++|.++|++. +|..||.++|....
T Consensus 217 ~-----------~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~ 285 (486)
T KOG0550|consen 217 D-----------NADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKT 285 (486)
T ss_pred c-----------chHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccch
Confidence 8 99999999999999999987 78899999998744
Q ss_pred ---HHHHHHHHHHhcccc
Q 030634 136 ---LHMELHKHGINQQTL 150 (174)
Q Consensus 136 ---~~~~l~~~~~~~~~~ 150 (174)
+|.|.+.+.+..||+
T Consensus 286 naklY~nra~v~~rLgrl 303 (486)
T KOG0550|consen 286 NAKLYGNRALVNIRLGRL 303 (486)
T ss_pred hHHHHHHhHhhhcccCCc
Confidence 799999999999998
No 95
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.87 E-value=1.3e-08 Score=67.11 Aligned_cols=67 Identities=19% Similarity=0.204 Sum_probs=62.3
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLG 83 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG 83 (174)
-|-+.+.|++|++.+++++.++|+++..|..+|.++..+|++ ++|+..|+++++++|+++.+....+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~l~~~l~~~p~~~~~~~~~a 70 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRY----------EEALEDLERALELSPDDPDARALRA 70 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccH----------HHHHHHHHHHHHHCCCcHHHHHHHH
Confidence 466788999999999999999999999999999999999999 9999999999999999999876554
No 96
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.83 E-value=2.5e-08 Score=83.91 Aligned_cols=91 Identities=15% Similarity=0.165 Sum_probs=82.8
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH----HHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY----TLWSL 82 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~----a~~~L 82 (174)
.+..+|++++|++.++++++++|+++.++..+|.++...|++ ++|+..+++++...|.++. .|+.+
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~----------~eA~~~l~~~l~~~~~~~~~~~~~~~~l 192 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRF----------KEGIAFMESWRDTWDCSSMLRGHNWWHL 192 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCH----------HHHHHHHHhhhhccCCCcchhHHHHHHH
Confidence 456788999999999999999999999999999999999999 9999999999999886543 46689
Q ss_pred HHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634 83 GNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (174)
Q Consensus 83 G~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P 118 (174)
|.++...| ++++|+.+|++++...|
T Consensus 193 a~~~~~~G-----------~~~~A~~~~~~~~~~~~ 217 (355)
T cd05804 193 ALFYLERG-----------DYEAALAIYDTHIAPSA 217 (355)
T ss_pred HHHHHHCC-----------CHHHHHHHHHHHhcccc
Confidence 99999999 99999999999988877
No 97
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.83 E-value=6.6e-08 Score=81.34 Aligned_cols=99 Identities=13% Similarity=0.048 Sum_probs=67.0
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCccc----------------------------chhhhhhHHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFES----------------------------VSDSKKIINE 60 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~----------------------------~~~~~~~~~e 60 (174)
-..+.+++|++.++++++.+|++..++.. +..+...|.+.. .....|.+++
T Consensus 54 ~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~ 132 (355)
T cd05804 54 WIAGDLPKALALLEQLLDDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDR 132 (355)
T ss_pred HHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHH
Confidence 34567888888888888888888877765 555544443311 0112344577
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634 61 AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 61 Ai~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~ 119 (174)
|+..++++++++|+++.++..+|.++...| ++++|+.+++++++..|.
T Consensus 133 A~~~~~~al~~~p~~~~~~~~la~i~~~~g-----------~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 133 AEEAARRALELNPDDAWAVHAVAHVLEMQG-----------RFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHHHHHHhhCCCCcHHHHHHHHHHHHcC-----------CHHHHHHHHHhhhhccCC
Confidence 777777777777777777777777777766 777777777777776663
No 98
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.82 E-value=4.7e-09 Score=70.35 Aligned_cols=67 Identities=31% Similarity=0.452 Sum_probs=57.2
Q ss_pred CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh---CC-C---CHHHHHHHHHHHHhCCCCccchhhhhc
Q 030634 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI---DP-A---KHYTLWSLGNAHTSCGFLTADLSEAKG 101 (174)
Q Consensus 29 P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l---dP-~---~~~a~~~LG~a~~~lG~~~~~~~~a~~ 101 (174)
|+-+.++.++|.++..+|++ ++|+..|++++++ .+ + -..++.++|.++..+|
T Consensus 2 ~~~a~~~~~la~~~~~~~~~----------~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g----------- 60 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRY----------DEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLG----------- 60 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTT-----------
T ss_pred HHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcC-----------
Confidence 44577899999999999999 9999999999976 22 2 2457899999999999
Q ss_pred CHHHHHHHHHHHHHh
Q 030634 102 DFDKASECFQRAVDE 116 (174)
Q Consensus 102 ~~~~Ai~~~~kAl~l 116 (174)
++++|++++++|+++
T Consensus 61 ~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 61 DYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999999986
No 99
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.82 E-value=8.1e-08 Score=90.04 Aligned_cols=98 Identities=18% Similarity=0.174 Sum_probs=88.5
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCC-HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLD-ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~-~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a 85 (174)
-|+.+|.|++|.++|.+++..+|++ .-+++.+|..++..|+. +.|+.+|+++++..|++.++...||..
T Consensus 316 s~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dl----------e~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 316 SYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDL----------EESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchH----------HHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 4789999999999999999999998 88899999999999888 999999999999999999999999999
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
|...+ ......++|..+..++++..|.+.
T Consensus 386 ya~~~-------~~~~~~d~a~~~l~K~~~~~~~d~ 414 (1018)
T KOG2002|consen 386 YAHSA-------KKQEKRDKASNVLGKVLEQTPVDS 414 (1018)
T ss_pred HHhhh-------hhhHHHHHHHHHHHHHHhcccccH
Confidence 98853 223356899999999999999887
No 100
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.81 E-value=1.5e-07 Score=82.95 Aligned_cols=121 Identities=19% Similarity=0.135 Sum_probs=102.0
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
-+.+.+++|++.++..+...|+|+-.+...+.++++.++. ++|++.+++++.++|+.+-.++++|.+|..
T Consensus 317 ~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~----------~~A~e~~~kal~l~P~~~~l~~~~a~all~ 386 (484)
T COG4783 317 YLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKA----------KEAIERLKKALALDPNSPLLQLNLAQALLK 386 (484)
T ss_pred HHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 3567889999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHH----HHhcCCCChHHHHHHHHHHHhcccc
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQK----SLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~----Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
.| ++.+|+..+++.+.-+|+++..+. +-+.--+.++.+.+.+..+.-.|++
T Consensus 387 ~g-----------~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~ 441 (484)
T COG4783 387 GG-----------KPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRL 441 (484)
T ss_pred cC-----------ChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCH
Confidence 99 999999999999999998883332 2233444556666666665555554
No 101
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.80 E-value=6e-08 Score=77.64 Aligned_cols=101 Identities=14% Similarity=0.209 Sum_probs=90.9
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHH-----HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLDAD-----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~-----a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a 85 (174)
-|.|++|...|..|+++-|.-+. .+.+.|.+++.++.+ +.||....+||+++|.+-.|+...+.+
T Consensus 108 ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~----------e~aI~dcsKaiel~pty~kAl~RRAea 177 (271)
T KOG4234|consen 108 NGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKW----------ESAIEDCSKAIELNPTYEKALERRAEA 177 (271)
T ss_pred cccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhH----------HHHHHHHHhhHhcCchhHHHHHHHHHH
Confidence 36899999999999999988644 678899999999998 999999999999999999999999999
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCC
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTK 132 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~ 132 (174)
|..+. .|++|++-|++.++++|.....|+++...|.
T Consensus 178 yek~e-----------k~eealeDyKki~E~dPs~~ear~~i~rl~~ 213 (271)
T KOG4234|consen 178 YEKME-----------KYEEALEDYKKILESDPSRREAREAIARLPP 213 (271)
T ss_pred HHhhh-----------hHHHHHHHHHHHHHhCcchHHHHHHHHhcCH
Confidence 99977 9999999999999999999988888744433
No 102
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.80 E-value=4e-07 Score=79.21 Aligned_cols=151 Identities=9% Similarity=0.062 Sum_probs=109.2
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhH-----------------------------
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKII----------------------------- 58 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~----------------------------- 58 (174)
+-+++.+++|+..+++..+.+|+++.++..++.++...|+++.........
T Consensus 163 ~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~ 242 (398)
T PRK10747 163 QLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD 242 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 456789999999999999999999999999999999999984322110000
Q ss_pred ---HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------
Q 030634 59 ---NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------- 121 (174)
Q Consensus 59 ---~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-------------- 121 (174)
+...+.+++..+..|+++.++..++..+...| +.++|....+++++..|+..
T Consensus 243 ~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g-----------~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~ 311 (398)
T PRK10747 243 QGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECD-----------DHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPE 311 (398)
T ss_pred cCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChH
Confidence 00011111111234668888888888888888 99999999999999666554
Q ss_pred ----HHHHHHhcCCCChHHHHHHHHHHHhcccc-----------CCCCchhhHHHHHHHHHhhh
Q 030634 122 ----LYQKSLEVSTKAPELHMELHKHGINQQTL-----------GGGSSASSAQVNFCICVHQM 170 (174)
Q Consensus 122 ----~y~~Al~l~~~~~~~~~~l~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~ 170 (174)
..++.++..|+++..+..+|.+++.++.. ...|+.. ++.-++.+....
T Consensus 312 ~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~ 374 (398)
T PRK10747 312 QLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRL 374 (398)
T ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHc
Confidence 55667788999999999999999999987 2235543 344555555443
No 103
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.78 E-value=1.2e-07 Score=77.95 Aligned_cols=95 Identities=20% Similarity=0.202 Sum_probs=87.2
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
..+|.--+|++...+-++..|+|+++|.-++.+|...|+| ++|.-|+|+.+-+.|.++..+-.+|.+++.
T Consensus 131 ka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f----------~kA~fClEE~ll~~P~n~l~f~rlae~~Yt 200 (289)
T KOG3060|consen 131 KAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDF----------EKAAFCLEELLLIQPFNPLYFQRLAEVLYT 200 (289)
T ss_pred HHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 3467777999999999999999999999999999999999 999999999999999999999999999988
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+| ..++++-|.++|.++++++|.+.
T Consensus 201 ~g--------g~eN~~~arkyy~~alkl~~~~~ 225 (289)
T KOG3060|consen 201 QG--------GAENLELARKYYERALKLNPKNL 225 (289)
T ss_pred Hh--------hHHHHHHHHHHHHHHHHhChHhH
Confidence 77 14578999999999999999665
No 104
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.76 E-value=5.3e-07 Score=78.57 Aligned_cols=129 Identities=15% Similarity=0.162 Sum_probs=105.8
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhh-----------------------hhhH-----HHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDS-----------------------KKII-----NEAI 62 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~-----------------------~~~~-----~eAi 62 (174)
.+.+++|+..+++..+.+|+++.++..++.++...|+++..... .+.+ ++++
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~ 245 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGI 245 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCH
Confidence 57899999999999999999999999999999999998531110 0112 2223
Q ss_pred HHHHHHHHhCC----CCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-----------------
Q 030634 63 SKFEEALVIDP----AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------- 121 (174)
Q Consensus 63 ~~lekAl~ldP----~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~----------------- 121 (174)
..++++.+..| +++.+++.++..+...| ++++|++.++++++..|++.
T Consensus 246 ~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g-----------~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~ 314 (409)
T TIGR00540 246 DGLLNWWKNQPRHRRHNIALKIALAEHLIDCD-----------DHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPED 314 (409)
T ss_pred HHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCC-----------ChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCC
Confidence 46777777788 58999999999999988 99999999999999999887
Q ss_pred ------HHHHHHhcCCCCh--HHHHHHHHHHHhcccc
Q 030634 122 ------LYQKSLEVSTKAP--ELHMELHKHGINQQTL 150 (174)
Q Consensus 122 ------~y~~Al~l~~~~~--~~~~~l~~~~~~~~~~ 150 (174)
.++++++..|++| .....+|.+++.+|..
T Consensus 315 ~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~ 351 (409)
T TIGR00540 315 NEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEF 351 (409)
T ss_pred hHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccH
Confidence 4466778889999 8888999999988876
No 105
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.73 E-value=1.5e-07 Score=84.75 Aligned_cols=90 Identities=13% Similarity=0.055 Sum_probs=80.1
Q ss_pred hHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634 13 LSEHNRKTAEANYAK--DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 13 ~~~eAl~~~~~al~~--~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG 90 (174)
...++.+.+++++.+ +|.++.++..+|......|++ ++|+..+++|+.++| +..+|..+|.++...|
T Consensus 399 ~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~----------~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G 467 (517)
T PRK10153 399 QLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKT----------DEAYQAINKAIDLEM-SWLNYVLLGKVYELKG 467 (517)
T ss_pred HHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcC
Confidence 456677777777774 888999999999999988998 999999999999999 5899999999999999
Q ss_pred CCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 030634 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124 (174)
Q Consensus 91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~ 124 (174)
++++|++.|++|++++|.++.|-
T Consensus 468 -----------~~~eA~~~~~~A~~L~P~~pt~~ 490 (517)
T PRK10153 468 -----------DNRLAADAYSTAFNLRPGENTLY 490 (517)
T ss_pred -----------CHHHHHHHHHHHHhcCCCCchHH
Confidence 99999999999999999988443
No 106
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.73 E-value=2e-07 Score=75.52 Aligned_cols=94 Identities=21% Similarity=0.293 Sum_probs=87.7
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
-||++|...=|+-.+..++.+.|.-|++++.+|.-+...|+| +.|.+.|.-.+++||...-++.|.|.++
T Consensus 74 lYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~f----------daa~eaFds~~ELDp~y~Ya~lNRgi~~ 143 (297)
T COG4785 74 LYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNF----------DAAYEAFDSVLELDPTYNYAHLNRGIAL 143 (297)
T ss_pred hhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccc----------hHHHHHhhhHhccCCcchHHHhccceee
Confidence 489999999999999999999999999999999999999999 9999999999999999999999999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+.-| +|.-|.+-+.+-.+-||+++
T Consensus 144 YY~g-----------R~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 144 YYGG-----------RYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred eecC-----------chHhhHHHHHHHHhcCCCCh
Confidence 9988 88888888777777788877
No 107
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=3e-08 Score=86.02 Aligned_cols=121 Identities=21% Similarity=0.277 Sum_probs=106.8
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH----------
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT---------- 78 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a---------- 78 (174)
.-++++.+|.......+++++.+.++++..|.++...++. +.|+.+|+++|.++|++..+
T Consensus 180 ~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~----------~ka~~hf~qal~ldpdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNA----------DKAINHFQQALRLDPDHQKSKSASMMPKKL 249 (486)
T ss_pred hhcccchhHHHHHHHHHhcccchhHHHHhcccccccccch----------HHHHHHHhhhhccChhhhhHHhHhhhHHHH
Confidence 4567899999999999999999999999999999999888 99999999999999997653
Q ss_pred --HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-------------------------HHHHHHhcCC
Q 030634 79 --LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------------LYQKSLEVST 131 (174)
Q Consensus 79 --~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-------------------------~y~~Al~l~~ 131 (174)
|-.-|+-.++.| +|.+|-++|..||.+||+|. -+..|+.+++
T Consensus 250 e~~k~~gN~~fk~G-----------~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~ 318 (486)
T KOG0550|consen 250 EVKKERGNDAFKNG-----------NYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS 318 (486)
T ss_pred HHHHhhhhhHhhcc-----------chhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH
Confidence 455677777777 99999999999999999997 4567788888
Q ss_pred CChHHHHHHHHHHHhcccc
Q 030634 132 KAPELHMELHKHGINQQTL 150 (174)
Q Consensus 132 ~~~~~~~~l~~~~~~~~~~ 150 (174)
..+.++..-+++++..+..
T Consensus 319 syikall~ra~c~l~le~~ 337 (486)
T KOG0550|consen 319 SYIKALLRRANCHLALEKW 337 (486)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877766
No 108
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.72 E-value=1.9e-07 Score=83.84 Aligned_cols=124 Identities=22% Similarity=0.220 Sum_probs=100.8
Q ss_pred hhHHhhhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh------
Q 030634 6 SDFDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------ 71 (174)
Q Consensus 6 ~~~~~~~~~~eAl~~~~~al~~--------~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l------ 71 (174)
..|-.+|+|+.|...++.++++ .|.-.....++|.+|..++++ ++|+..|++|+.+
T Consensus 207 ~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~----------~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 207 EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKY----------DEAVNLYEEALTIREEVFG 276 (508)
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccH----------HHHHHHHHHHHHHHHHhcC
Confidence 4678899999999999999999 777777888899999999999 9999999999877
Q ss_pred --CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC-----CH-----------------------
Q 030634 72 --DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT-----NE----------------------- 121 (174)
Q Consensus 72 --dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~-----~~----------------------- 121 (174)
+|.-..++.+||.+|...| +|++|..++++|+++--. ++
T Consensus 277 ~~h~~va~~l~nLa~ly~~~G-----------Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~ 345 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQG-----------KFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAK 345 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccC-----------ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHH
Confidence 5556678999999999999 999999999999887433 11
Q ss_pred -HHHHHHhcC--------CCChHHHHHHHHHHHhcccc
Q 030634 122 -LYQKSLEVS--------TKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 122 -~y~~Al~l~--------~~~~~~~~~l~~~~~~~~~~ 150 (174)
.+++++++- +..+..+.|||.++..+|+.
T Consensus 346 ~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~ 383 (508)
T KOG1840|consen 346 KLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKY 383 (508)
T ss_pred HHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcch
Confidence 445555332 24456888999999988887
No 109
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.70 E-value=2.2e-07 Score=87.14 Aligned_cols=137 Identities=18% Similarity=0.176 Sum_probs=110.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhCCCC
Q 030634 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-YTLWSLGNAHTSCGFL 92 (174)
Q Consensus 14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~-~a~~~LG~a~~~lG~~ 92 (174)
.+.|.+.+.-+++..|++.-++...|.+.+.-++| ..|+.+|++++.++|... +....+|.|+..+|
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY----------~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~-- 213 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDY----------RGALKYYKKALRINPACKADVRIGIGHCFWKLG-- 213 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccH----------HHHHHHHHHHHhcCcccCCCccchhhhHHHhcc--
Confidence 57788888888888888888888888888777777 888888888888888865 56677888888888
Q ss_pred ccchhhhhcCHHHHHHHHHHHHHhCCCCH------------------------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634 93 TADLSEAKGDFDKASECFQRAVDEEPTNE------------------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (174)
Q Consensus 93 ~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~ 148 (174)
+-+.|+..|.+|+++||.+. ...++...++..|.+.+.|++.++..+
T Consensus 214 ---------~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~ 284 (1018)
T KOG2002|consen 214 ---------MSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKK 284 (1018)
T ss_pred ---------chhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcc
Confidence 88888888888888888776 445666888888998888888888777
Q ss_pred cc--------------CCCCchhhHHHHHHHHHhhhc
Q 030634 149 TL--------------GGGSSASSAQVNFCICVHQMK 171 (174)
Q Consensus 149 ~~--------------~~~~~~~~~~~~~~~~~~~~~ 171 (174)
-- .-+|--++..|+.|-+-|.+|
T Consensus 285 dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~G 321 (1018)
T KOG2002|consen 285 DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQG 321 (1018)
T ss_pred cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhc
Confidence 54 122667788899999999876
No 110
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.69 E-value=1.5e-07 Score=85.27 Aligned_cols=89 Identities=24% Similarity=0.206 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
+.|...++.++..++..|.+++.+..+|..+..+|+- ++|-...+.+++.||.++-.|.-+|.++..-.
T Consensus 21 kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~----------~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK- 89 (700)
T KOG1156|consen 21 KQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKK----------EEAYELVRLGLRNDLKSHVCWHVLGLLQRSDK- 89 (700)
T ss_pred HHHHhHHHHHHHHHHhCCccchhHHhccchhhcccch----------HHHHHHHHHHhccCcccchhHHHHHHHHhhhh-
Confidence 4688899999999999999999999999999999999 99999999999999999999999999999976
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+|++|++||+.|+.++|+|.
T Consensus 90 ----------~Y~eaiKcy~nAl~~~~dN~ 109 (700)
T KOG1156|consen 90 ----------KYDEAIKCYRNALKIEKDNL 109 (700)
T ss_pred ----------hHHHHHHHHHHHHhcCCCcH
Confidence 99999999999999999998
No 111
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.62 E-value=1.7e-06 Score=70.92 Aligned_cols=102 Identities=14% Similarity=0.085 Sum_probs=82.4
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHH---HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNL---TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLG 83 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~---~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG 83 (174)
..|.|++|++.++.++...|..+.+. +++|.++...+++ ++|+..+++.++++|+++ .++|.+|
T Consensus 44 ~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y----------~~A~~~~e~fi~~~P~~~~~~~a~Y~~g 113 (243)
T PRK10866 44 QDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADL----------PLAQAAIDRFIRLNPTHPNIDYVLYMRG 113 (243)
T ss_pred HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCcCCCchHHHHHHHH
Confidence 34799999999999999999987665 9999999999999 999999999999999876 4688999
Q ss_pred HHHHhCCC--C-----ccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 84 NAHTSCGF--L-----TADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 84 ~a~~~lG~--~-----~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.++..++. + .+..........+|+..|++.++.-|++.
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ 158 (243)
T PRK10866 114 LTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQ 158 (243)
T ss_pred HhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCCh
Confidence 98766541 0 01111112235689999999999999998
No 112
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.62 E-value=6.1e-07 Score=71.24 Aligned_cols=99 Identities=20% Similarity=0.216 Sum_probs=78.1
Q ss_pred hhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHH
Q 030634 10 RLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLG 83 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG 83 (174)
+.|.|.+|++.+++++...|++ +++++.+|.++...|++ ++|+..+++.++..|+++ .+++.+|
T Consensus 17 ~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y----------~~A~~~~~~fi~~yP~~~~~~~A~Y~~g 86 (203)
T PF13525_consen 17 QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDY----------EEAIAAYERFIKLYPNSPKADYALYMLG 86 (203)
T ss_dssp HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHH-TT-TTHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCCCCcchhhHHHHHH
Confidence 5678999999999999998875 78999999999999999 999999999999999977 4789999
Q ss_pred HHHHhCCCCccch---hhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 84 NAHTSCGFLTADL---SEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 84 ~a~~~lG~~~~~~---~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+++.+. ++. ........+|+..|+..++.-|++.
T Consensus 87 ~~~~~~~---~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~ 124 (203)
T PF13525_consen 87 LSYYKQI---PGILRSDRDQTSTRKAIEEFEELIKRYPNSE 124 (203)
T ss_dssp HHHHHHH---HHHH-TT---HHHHHHHHHHHHHHHH-TTST
T ss_pred HHHHHhC---ccchhcccChHHHHHHHHHHHHHHHHCcCch
Confidence 9987753 111 2334457899999999999999998
No 113
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.60 E-value=3.6e-07 Score=68.57 Aligned_cols=84 Identities=21% Similarity=0.278 Sum_probs=67.0
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a 85 (174)
-..|.|++|...++.++...|+. +.+.+++|.+++..|++ ++|+..++. +.-.+-.+.++..+|.+
T Consensus 59 ~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~----------d~Al~~L~~-~~~~~~~~~~~~~~Gdi 127 (145)
T PF09976_consen 59 YEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQY----------DEALATLQQ-IPDEAFKALAAELLGDI 127 (145)
T ss_pred HHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHh-ccCcchHHHHHHHHHHH
Confidence 34578888888888888877654 45778888888888888 888888866 34455566777888888
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAV 114 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl 114 (174)
|...| ++++|+..|++||
T Consensus 128 ~~~~g-----------~~~~A~~~y~~Al 145 (145)
T PF09976_consen 128 YLAQG-----------DYDEARAAYQKAL 145 (145)
T ss_pred HHHCC-----------CHHHHHHHHHHhC
Confidence 88888 9999999999985
No 114
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.59 E-value=5.3e-08 Score=56.14 Aligned_cols=34 Identities=21% Similarity=0.379 Sum_probs=31.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHH
Q 030634 64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (174)
Q Consensus 64 ~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~ 108 (174)
+|++||+++|+++.+|++||.+|...| ++++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g-----------~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQG-----------DYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCc-----------CHHhhcC
Confidence 489999999999999999999999999 9999863
No 115
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.58 E-value=1e-06 Score=73.15 Aligned_cols=89 Identities=21% Similarity=0.213 Sum_probs=74.8
Q ss_pred CHHHHHHHHHHH-HHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCccchhhhhcCHHHH
Q 030634 31 DADNLTRWGEAL-LELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (174)
Q Consensus 31 ~~~a~~~lg~~l-~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~A 106 (174)
+...++..|..+ ...|++ ++|+..|++.++..|++ +.++|.+|.+|+..| ++++|
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y----------~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g-----------~~~~A 199 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQ----------DDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKG-----------KKDDA 199 (263)
T ss_pred CHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcC-----------CHHHH
Confidence 457888888877 556788 99999999999999999 589999999999999 99999
Q ss_pred HHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 107 SECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 107 i~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
+.+|+++++..|++ |..++++..+|.++..+|..
T Consensus 200 ~~~f~~vv~~yP~s----------~~~~dAl~klg~~~~~~g~~ 233 (263)
T PRK10803 200 AYYFASVVKNYPKS----------PKAADAMFKVGVIMQDKGDT 233 (263)
T ss_pred HHHHHHHHHHCCCC----------cchhHHHHHHHHHHHHcCCH
Confidence 99999999999986 44566666677777665543
No 116
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.58 E-value=2e-07 Score=79.88 Aligned_cols=100 Identities=20% Similarity=0.105 Sum_probs=93.8
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
.|=.+|.|+||+.+|.+++..+|.++..+.+.+.+|+.+++| ..|..-.+.|+.+|-....||-..|.+-
T Consensus 106 ~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~F----------A~AE~DC~~AiaLd~~Y~KAYSRR~~AR 175 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSF----------AQAEEDCEAAIALDKLYVKAYSRRMQAR 175 (536)
T ss_pred hhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHH----------HHHHHhHHHHHHhhHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999999999999999 8999999999999999999999999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al 127 (174)
..+| ...+|.+-++.+|++.|++...++.+
T Consensus 176 ~~Lg-----------~~~EAKkD~E~vL~LEP~~~ELkK~~ 205 (536)
T KOG4648|consen 176 ESLG-----------NNMEAKKDCETVLALEPKNIELKKSL 205 (536)
T ss_pred HHHh-----------hHHHHHHhHHHHHhhCcccHHHHHHH
Confidence 9998 99999999999999999998666654
No 117
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.57 E-value=2.6e-06 Score=74.29 Aligned_cols=122 Identities=11% Similarity=0.037 Sum_probs=94.9
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDA-DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~-~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
+.++|.+++|.+.+.++.+..|++. .+....+.+++..|++ ++|+..+++.++..|+++.++..++.++
T Consensus 128 a~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~----------~~Al~~l~~l~~~~P~~~~~l~ll~~~~ 197 (409)
T TIGR00540 128 AQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNEL----------HAARHGVDKLLEMAPRHKEVLKLAEEAY 197 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4566778888888888877777774 4555567777777777 9999999999999999999999999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-------------------------HHHHHHhcCC----CChHHH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-------------------------LYQKSLEVST----KAPELH 137 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-------------------------~y~~Al~l~~----~~~~~~ 137 (174)
...| ++++|++.+.+.++..+.++ ...++.+..| +++.++
T Consensus 198 ~~~~-----------d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~ 266 (409)
T TIGR00540 198 IRSG-----------AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALK 266 (409)
T ss_pred HHHh-----------hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHH
Confidence 9988 99999999999887754433 1122334455 478888
Q ss_pred HHHHHHHHhcccc
Q 030634 138 MELHKHGINQQTL 150 (174)
Q Consensus 138 ~~l~~~~~~~~~~ 150 (174)
..++..+..+|..
T Consensus 267 ~~~a~~l~~~g~~ 279 (409)
T TIGR00540 267 IALAEHLIDCDDH 279 (409)
T ss_pred HHHHHHHHHCCCh
Confidence 8888888888876
No 118
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.56 E-value=9.5e-07 Score=83.76 Aligned_cols=104 Identities=12% Similarity=0.157 Sum_probs=86.4
Q ss_pred hhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch--------hhhhhHHHHHHHHHHHHHhCCCCHH
Q 030634 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS--------DSKKIINEAISKFEEALVIDPAKHY 77 (174)
Q Consensus 6 ~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~--------~~~~~~~eAi~~lekAl~ldP~~~~ 77 (174)
+.|.+++.+++|++.++.+++.+|+....++.+|.++...+++.+.. ...+.+ .+++.+-+.+...|.+-.
T Consensus 39 ~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~-~~ve~~~~~i~~~~~~k~ 117 (906)
T PRK14720 39 DAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKW-AIVEHICDKILLYGENKL 117 (906)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccch-hHHHHHHHHHHhhhhhhH
Confidence 34668889999999999999999999999999999998888874311 111222 666666666666777779
Q ss_pred HHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 78 a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
|++.||.||-.+| +.++|...|+++|++||+|+
T Consensus 118 Al~~LA~~Ydk~g-----------~~~ka~~~yer~L~~D~~n~ 150 (906)
T PRK14720 118 ALRTLAEAYAKLN-----------ENKKLKGVWERLVKADRDNP 150 (906)
T ss_pred HHHHHHHHHHHcC-----------ChHHHHHHHHHHHhcCcccH
Confidence 9999999999999 99999999999999999998
No 119
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.56 E-value=1.4e-07 Score=57.06 Aligned_cols=43 Identities=23% Similarity=0.233 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
|.++..+|.++..+|++ ++|+..|+++++.+|+++.+|..||.
T Consensus 1 p~~~~~la~~~~~~G~~----------~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQP----------DEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 46899999999999999 99999999999999999999999985
No 120
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=1.3e-06 Score=76.17 Aligned_cols=89 Identities=16% Similarity=0.156 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
.+|+.|+...+++++.+|++.+++...|.++..+|+. ++|+-.|+.|..+.|-+.+.|-.|-.+|...|
T Consensus 314 K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~----------~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~- 382 (564)
T KOG1174|consen 314 KKFERALNFVEKCIDSEPRNHEALILKGRLLIALERH----------TQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQK- 382 (564)
T ss_pred hhHHHHHHHHHHHhccCcccchHHHhccHHHHhccch----------HHHHHHHHHHHhcchhhHHHHHHHHHHHHhhc-
Confidence 4789999999999999999999999999999999999 99999999999999999999999999999888
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+.+|......+++.-|+++
T Consensus 383 ----------~~kEA~~~An~~~~~~~~sA 402 (564)
T KOG1174|consen 383 ----------RFKEANALANWTIRLFQNSA 402 (564)
T ss_pred ----------hHHHHHHHHHHHHHHhhcch
Confidence 44444444444444444443
No 121
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.54 E-value=6.8e-07 Score=77.73 Aligned_cols=84 Identities=15% Similarity=0.065 Sum_probs=78.1
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
+.++++++.+++.++.+|+|+..+..+|.++...+++ ++|.+.|+++++++|++.. +..++.++..+|
T Consensus 308 ~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~----------~~A~~~le~al~~~P~~~~-~~~La~~~~~~g- 375 (398)
T PRK10747 308 NNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEW----------QEASLAFRAALKQRPDAYD-YAWLADALDRLH- 375 (398)
T ss_pred CChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcC-
Confidence 6888999999999999999999999999999999999 9999999999999999766 557999999999
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
+.++|.++|++++.+-
T Consensus 376 ----------~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 376 ----------KPEEAAAMRRDGLMLT 391 (398)
T ss_pred ----------CHHHHHHHHHHHHhhh
Confidence 9999999999998753
No 122
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.52 E-value=5.6e-07 Score=84.88 Aligned_cols=97 Identities=26% Similarity=0.275 Sum_probs=86.0
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-cccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~-~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a 85 (174)
|.=+-..|++|++..+++++.||+|..++.-+|.++..+++ . ++|.++|..|.++||++.-||-.||+.
T Consensus 11 ~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~l----------e~A~ehYv~AaKldpdnlLAWkGL~nL 80 (1238)
T KOG1127|consen 11 DALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDL----------EKAAEHYVLAAKLDPDNLLAWKGLGNL 80 (1238)
T ss_pred HHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCH----------HHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence 33455689999999999999999999999999999999988 7 999999999999999999999999999
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
|..-. ...+++++-.+|++++.+.|+..
T Consensus 81 ye~~~--------dIl~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 81 YERYN--------DILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred HHccc--------hhhhhhHhHHHHHHHHHhhhhhh
Confidence 98732 12378999999999999988765
No 123
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.52 E-value=2.4e-07 Score=81.80 Aligned_cols=115 Identities=19% Similarity=0.241 Sum_probs=91.7
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~ 92 (174)
+|.+|-.++..++.+|-.++.++.+.|++-+..|++ ++|...|++||.-|....+++||+|..+..+|
T Consensus 471 ~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~----------dka~~~ykeal~ndasc~ealfniglt~e~~~-- 538 (840)
T KOG2003|consen 471 DFADAQQYADIALNIDRYNAAALTNKGNIAFANGDL----------DKAAEFYKEALNNDASCTEALFNIGLTAEALG-- 538 (840)
T ss_pred chhHHHHHHHHHhcccccCHHHhhcCCceeeecCcH----------HHHHHHHHHHHcCchHHHHHHHHhcccHHHhc--
Confidence 678888888888888888888888888888777777 99999999999999999999999999998888
Q ss_pred ccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634 93 TADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (174)
Q Consensus 93 ~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~ 148 (174)
++++|++||-|.-.+--++. ++.++..+.|.+|...+.|+.+|-.-|
T Consensus 539 ---------~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqeg 606 (840)
T KOG2003|consen 539 ---------NLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEG 606 (840)
T ss_pred ---------CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhccc
Confidence 88888888877665544444 556666777888888777777764433
No 124
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=5.2e-07 Score=73.71 Aligned_cols=85 Identities=19% Similarity=0.168 Sum_probs=80.6
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG 90 (174)
-.+|..|+..|.+++.++|..+..|.+.+.+++++.++ +.+..--++|++++|+...++|.||.++....
T Consensus 23 ~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~----------~~v~~dcrralql~~N~vk~h~flg~~~l~s~ 92 (284)
T KOG4642|consen 23 PKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHW----------EPVEEDCRRALQLDPNLVKAHYFLGQWLLQSK 92 (284)
T ss_pred hhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhh----------hhhhhhHHHHHhcChHHHHHHHHHHHHHHhhc
Confidence 34899999999999999999999999999999999999 99999999999999999999999999999977
Q ss_pred CCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 91 FLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
.|++||.++++|..+
T Consensus 93 -----------~~~eaI~~Lqra~sl 107 (284)
T KOG4642|consen 93 -----------GYDEAIKVLQRAYSL 107 (284)
T ss_pred -----------cccHHHHHHHHHHHH
Confidence 999999999999665
No 125
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.50 E-value=2.6e-07 Score=52.45 Aligned_cols=34 Identities=38% Similarity=0.663 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 76 ~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
+.+|+++|.+|..+| ++++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~-----------~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLG-----------DYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhC-----------CchHHHHHHHHHHHHCcCC
Confidence 468999999999999 9999999999999999975
No 126
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.1e-06 Score=76.63 Aligned_cols=110 Identities=18% Similarity=0.139 Sum_probs=59.7
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHH-HHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWG-EALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg-~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
=-.++++||.-.++.+++.-|+++.++..+| .++..... +-++|.+.++++|+++|....|-..++..+.
T Consensus 379 LA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~---------~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~ 449 (564)
T KOG1174|consen 379 LAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPR---------MREKAKKFAEKSLKINPIYTPAVNLIAELCQ 449 (564)
T ss_pred HhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCch---------hHHHHHHHHHhhhccCCccHHHHHHHHHHHH
Confidence 3445666666666666666666666666665 44433211 0155666666666666666655555555555
Q ss_pred hCCC----------------------CccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634 88 SCGF----------------------LTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (174)
Q Consensus 88 ~lG~----------------------~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al 127 (174)
.-|+ ..++...|...+.+|+++|.+||++||++..-.+.+
T Consensus 450 ~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~sl~Gl 511 (564)
T KOG1174|consen 450 VEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKRTLRGL 511 (564)
T ss_pred hhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchHHHHHH
Confidence 5441 001222223366666666666666666666544444
No 127
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.50 E-value=1.3e-06 Score=80.48 Aligned_cols=109 Identities=20% Similarity=0.097 Sum_probs=88.2
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|-..+.-++|.-+..++..++|..+..|+..|.++...|++ ++|.+.|..|+.+||+++.+...+|.++.
T Consensus 660 ~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~----------~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 660 FLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQL----------EEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhh----------HHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 44556778888899999999999999999999999988888 99999999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHH--HHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 88 SCGFLTADLSEAKGDFDKASE--CFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~--~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
..| +-.-|.+ .... +++++|..+++|+++|.+...+|..
T Consensus 730 e~G-----------~~~la~~~~~L~d-------------alr~dp~n~eaW~~LG~v~k~~Gd~ 770 (799)
T KOG4162|consen 730 ELG-----------SPRLAEKRSLLSD-------------ALRLDPLNHEAWYYLGEVFKKLGDS 770 (799)
T ss_pred HhC-----------CcchHHHHHHHHH-------------HHhhCCCCHHHHHHHHHHHHHccch
Confidence 988 3333333 4444 5566666788888888888888876
No 128
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.49 E-value=1e-06 Score=76.30 Aligned_cols=93 Identities=18% Similarity=0.252 Sum_probs=79.9
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
+=.|+.|.+|+..+.+++.++|+|+.++++.|.++..+|++ +.|+..|++|++++|+|..+...|..+..
T Consensus 267 ~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~----------~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 267 YLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEY----------DLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccH----------HHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999 99999999999999999999988888776
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
... ...++..+.|.+.+..-+..
T Consensus 337 k~~----------~~~~kekk~y~~mF~k~~~~ 359 (397)
T KOG0543|consen 337 KIR----------EYEEKEKKMYANMFAKLAEE 359 (397)
T ss_pred HHH----------HHHHHHHHHHHHHhhccccc
Confidence 643 23455688888887765543
No 129
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.49 E-value=3.3e-06 Score=75.95 Aligned_cols=99 Identities=17% Similarity=0.183 Sum_probs=76.5
Q ss_pred HHhhhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCccc-----------------------------
Q 030634 8 FDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFES----------------------------- 50 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~--------~P~~~~a~~~lg~~l~~~g~~~~----------------------------- 50 (174)
|-.++.|.+|...|++|+.+ +|.-+.++.+||.+|...|++.+
T Consensus 251 y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~ 330 (508)
T KOG1840|consen 251 YRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSE 330 (508)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHH
Confidence 55677888888888888874 56666778888888888888754
Q ss_pred ---chhhhhhHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 51 ---VSDSKKIINEAISKFEEALVI--------DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 51 ---~~~~~~~~~eAi~~lekAl~l--------dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
.....+.+++|+..+++++++ +|.-+..+.+||.+|..+| +|++|.+.|++|+.+.
T Consensus 331 ~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~g-----------k~~ea~~~~k~ai~~~ 397 (508)
T KOG1840|consen 331 LAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMG-----------KYKEAEELYKKAIQIL 397 (508)
T ss_pred HHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhc-----------chhHHHHHHHHHHHHH
Confidence 112245579999999998877 2233567889999999999 9999999999999886
No 130
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.48 E-value=1.6e-06 Score=80.86 Aligned_cols=93 Identities=16% Similarity=0.187 Sum_probs=89.1
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
-|+++|..+.++...-.|-.++|+|.+.|..++....++|.+ ++|+-+|.+||+.+|.+....+..+.+|
T Consensus 182 IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i----------~qA~~cy~rAI~~~p~n~~~~~ers~L~ 251 (895)
T KOG2076|consen 182 IYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNI----------NQARYCYSRAIQANPSNWELIYERSSLY 251 (895)
T ss_pred HHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccH----------HHHHHHHHHHHhcCCcchHHHHHHHHHH
Confidence 489999999999999999999999999999999999999888 9999999999999999999999999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
.++| ++..|++.|++.+.++|..
T Consensus 252 ~~~G-----------~~~~Am~~f~~l~~~~p~~ 274 (895)
T KOG2076|consen 252 QKTG-----------DLKRAMETFLQLLQLDPPV 274 (895)
T ss_pred HHhC-----------hHHHHHHHHHHHHhhCCch
Confidence 9999 9999999999999999933
No 131
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.48 E-value=6.5e-07 Score=82.09 Aligned_cols=91 Identities=16% Similarity=0.134 Sum_probs=80.4
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
+.++|.++.+.++..++++|-....|+.+|.+..+.+++ +.|..+|.+++.++|++.++|.|++.+|..+
T Consensus 497 ~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~----------q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~ 566 (777)
T KOG1128|consen 497 SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKE----------QAAVKAFHRCVTLEPDNAEAWNNLSTAYIRL 566 (777)
T ss_pred cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhh----------HHHHHHHHHHhhcCCCchhhhhhhhHHHHHH
Confidence 357899999999999999999999999999999999999 9999999999999999999999999999998
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
| +-.+|-..+++|++-|-++.
T Consensus 567 ~-----------~k~ra~~~l~EAlKcn~~~w 587 (777)
T KOG1128|consen 567 K-----------KKKRAFRKLKEALKCNYQHW 587 (777)
T ss_pred h-----------hhHHHHHHHHHHhhcCCCCC
Confidence 8 66666666666666664443
No 132
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.48 E-value=1.2e-06 Score=68.74 Aligned_cols=77 Identities=21% Similarity=0.211 Sum_probs=62.8
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch-hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-DSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~-~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a 85 (174)
++...+++|+.-+++|+.++|+..++++.||+++...+...+.. ++..-+++|..+|++|...+|++...+..|..+
T Consensus 46 es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~ 123 (186)
T PF06552_consen 46 ESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMA 123 (186)
T ss_dssp HHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHH
Confidence 66789999999999999999999999999999999999865544 566779999999999999999999877776655
No 133
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.47 E-value=1.4e-06 Score=79.03 Aligned_cols=72 Identities=17% Similarity=0.084 Sum_probs=64.0
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
-.+|+-++|....+.+++.||.+..+|+.+|.++....+| ++||++|+.|++++|+|..+|..|+.....
T Consensus 52 ~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y----------~eaiKcy~nAl~~~~dN~qilrDlslLQ~Q 121 (700)
T KOG1156|consen 52 NCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKY----------DEAIKCYRNALKIEKDNLQILRDLSLLQIQ 121 (700)
T ss_pred hcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 3577889999999999999999999999999999887777 999999999999999999999999888887
Q ss_pred CC
Q 030634 89 CG 90 (174)
Q Consensus 89 lG 90 (174)
++
T Consensus 122 mR 123 (700)
T KOG1156|consen 122 MR 123 (700)
T ss_pred HH
Confidence 77
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.46 E-value=1.4e-06 Score=76.91 Aligned_cols=99 Identities=20% Similarity=0.108 Sum_probs=81.8
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
-..++.++|.+.+++++.++|+.+-.+.++|.+|++.|++ ++||..+...+.-+|+++..|..|+.+|..
T Consensus 351 ~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~----------~eai~~L~~~~~~~p~dp~~w~~LAqay~~ 420 (484)
T COG4783 351 LEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKP----------QEAIRILNRYLFNDPEDPNGWDLLAQAYAE 420 (484)
T ss_pred HHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCCh----------HHHHHHHHHHhhcCCCCchHHHHHHHHHHH
Confidence 3457899999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CCC------CccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 89 CGF------LTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 89 lG~------~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
+|. .+++..--.|++++|+..+.+|.+..
T Consensus 421 ~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 421 LGNRAEALLARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred hCchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 991 12233333455566666666555544
No 135
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.45 E-value=4.1e-06 Score=69.29 Aligned_cols=96 Identities=18% Similarity=0.201 Sum_probs=86.6
Q ss_pred hhhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 030634 10 RLLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLG 83 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG 83 (174)
..|.|.+|...|+.-++..|++ +.+++|||.+++.+|++ ++|...|..+++-.|++ |++++.||
T Consensus 153 ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y----------~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 153 KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDY----------EDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccc----------hHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4567999999999999999985 78999999999999999 99999999999997775 57899999
Q ss_pred HHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHH
Q 030634 84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKS 126 (174)
Q Consensus 84 ~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~A 126 (174)
.+...+| +.++|-..|++.++.-|+....+.+
T Consensus 223 ~~~~~l~-----------~~d~A~atl~qv~k~YP~t~aA~~A 254 (262)
T COG1729 223 VSLGRLG-----------NTDEACATLQQVIKRYPGTDAAKLA 254 (262)
T ss_pred HHHHHhc-----------CHHHHHHHHHHHHHHCCCCHHHHHH
Confidence 9999999 9999999999999999998854443
No 136
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.45 E-value=2.9e-06 Score=62.56 Aligned_cols=69 Identities=25% Similarity=0.293 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHH
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~ 108 (174)
|.+++.+|.++..+|+. ++|+..|++++...++. ..+++.+|.++..+| ++++|+.
T Consensus 1 ~~~~~~~A~a~d~~G~~----------~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG-----------~~deA~~ 59 (120)
T PF12688_consen 1 PRALYELAWAHDSLGRE----------EEAIPLYRRALAAGLSGADRRRALIQLASTLRNLG-----------RYDEALA 59 (120)
T ss_pred CchHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcC-----------CHHHHHH
Confidence 46789999999999999 99999999999986555 568999999999999 9999999
Q ss_pred HHHHHHHhCCCCH
Q 030634 109 CFQRAVDEEPTNE 121 (174)
Q Consensus 109 ~~~kAl~l~P~~~ 121 (174)
.+++++...|++.
T Consensus 60 ~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 60 LLEEALEEFPDDE 72 (120)
T ss_pred HHHHHHHHCCCcc
Confidence 9999999888744
No 137
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.44 E-value=3.8e-06 Score=63.62 Aligned_cols=108 Identities=16% Similarity=0.126 Sum_probs=86.8
Q ss_pred hhhhHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHH
Q 030634 10 RLLLSEHNRKTAEANYAKDPL---DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLWSLG 83 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~---~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~---a~~~LG 83 (174)
+.+.|++|++.++......|. ..++...+|.+++..+++ ++|+..+++-|+++|+++. ++|..|
T Consensus 22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y----------~~A~a~~~rFirLhP~hp~vdYa~Y~~g 91 (142)
T PF13512_consen 22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDY----------EEAIAAYDRFIRLHPTHPNVDYAYYMRG 91 (142)
T ss_pred HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCCCccHHHHHHH
Confidence 346899999999999998876 578999999999999999 9999999999999999885 688899
Q ss_pred HHHHhCCC--C--ccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634 84 NAHTSCGF--L--TADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (174)
Q Consensus 84 ~a~~~lG~--~--~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al 127 (174)
.+++.+.+ + ........+...+|...|++.++.-|++.....|-
T Consensus 92 L~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya~dA~ 139 (142)
T PF13512_consen 92 LSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYAADAR 139 (142)
T ss_pred HHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhHHHHH
Confidence 99988751 0 00122222347889999999999999988655543
No 138
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.44 E-value=6.2e-07 Score=50.49 Aligned_cols=34 Identities=29% Similarity=0.574 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 76 ~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
+.+|+.+|.++..+| ++++|+++|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~-----------~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLG-----------NYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHCcCC
Confidence 468999999999999 9999999999999999986
No 139
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.42 E-value=2.6e-06 Score=80.51 Aligned_cols=118 Identities=15% Similarity=0.112 Sum_probs=106.1
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
...+.|+..+.+++++||+.+.+|..+|.+|...-+. ..|..+|++|.++||.+.+++-.++..|....
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm----------~RA~kCf~KAFeLDatdaeaaaa~adtyae~~- 540 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDM----------KRAKKCFDKAFELDATDAEAAAASADTYAEES- 540 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH----------HHHHHHHHHHhcCCchhhhhHHHHHHHhhccc-
Confidence 3567899999999999999999999999999887666 99999999999999999999999999999977
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH-----------------------HHHHHHhcCCCChHHHHHHHHHHHhcc
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------LYQKSLEVSTKAPELHMELHKHGINQQ 148 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-----------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~ 148 (174)
+.+.|....-++-+.+|... .++-|++.+|++...+..+|..|-..|
T Consensus 541 ----------~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sG 610 (1238)
T KOG1127|consen 541 ----------TWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESG 610 (1238)
T ss_pred ----------cHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcC
Confidence 88888888777777666544 789999999999999999999999999
Q ss_pred cc
Q 030634 149 TL 150 (174)
Q Consensus 149 ~~ 150 (174)
|-
T Consensus 611 ry 612 (1238)
T KOG1127|consen 611 RY 612 (1238)
T ss_pred ce
Confidence 98
No 140
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.35 E-value=1e-05 Score=69.53 Aligned_cols=89 Identities=10% Similarity=0.129 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
|...-|+......+++.|=++..+...+.||...|+. ..||.-++.+-++..++.+.+|.++..++..|
T Consensus 169 GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~----------k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vg- 237 (504)
T KOG0624|consen 169 GDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEP----------KKAIHDLKQASKLSQDNTEGHYKISQLLYTVG- 237 (504)
T ss_pred CchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcH----------HHHHHHHHHHHhccccchHHHHHHHHHHHhhh-
Confidence 4567788888999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+.+.++.-.+.+|++||++.
T Consensus 238 ----------d~~~sL~~iRECLKldpdHK 257 (504)
T KOG0624|consen 238 ----------DAENSLKEIRECLKLDPDHK 257 (504)
T ss_pred ----------hHHHHHHHHHHHHccCcchh
Confidence 99999999999999999987
No 141
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=1.6e-05 Score=59.49 Aligned_cols=105 Identities=19% Similarity=0.130 Sum_probs=84.9
Q ss_pred hhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---HHHHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---HYTLWSLGN 84 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---~~a~~~LG~ 84 (174)
.+....+...++..+..+|+. ..+.+.+|.++...|++ ++|+..|++++...|+. +.+.+.|+.
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~----------~~A~~~l~~~~~~~~d~~l~~~a~l~LA~ 93 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDY----------DEAKAALEKALANAPDPELKPLARLRLAR 93 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 446677777888899999998 67788899999999999 99999999999988776 457889999
Q ss_pred HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
++...| +|++|+..++. .|+ .+-.+..+.-+|.++..+|..
T Consensus 94 ~~~~~~-----------~~d~Al~~L~~----~~~----------~~~~~~~~~~~Gdi~~~~g~~ 134 (145)
T PF09976_consen 94 ILLQQG-----------QYDEALATLQQ----IPD----------EAFKALAAELLGDIYLAQGDY 134 (145)
T ss_pred HHHHcC-----------CHHHHHHHHHh----ccC----------cchHHHHHHHHHHHHHHCCCH
Confidence 999998 99999999866 121 122355677788888888764
No 142
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.32 E-value=9.6e-06 Score=74.22 Aligned_cols=101 Identities=15% Similarity=0.098 Sum_probs=83.1
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchh------------------------hhhhHHHHHHHH
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD------------------------SKKIINEAISKF 65 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~------------------------~~~~~~eAi~~l 65 (174)
-|+..++|++.++++++..|.....|..+|.++-.+++.+.+.+ ..+.+-.|..+|
T Consensus 663 ~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 663 YLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred HhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence 36789999999999999999999999999999988888743221 234567888888
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 66 EEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 66 ekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+++.-.||++...|...-.+-...| +.++|.....+||+.=|++.
T Consensus 743 drarlkNPk~~~lwle~Ir~ElR~g-----------n~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 743 DRARLKNPKNALLWLESIRMELRAG-----------NKEQAELLMAKALQECPSSG 787 (913)
T ss_pred HHHHhcCCCcchhHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCccc
Confidence 8888888888888887777777777 88888888888888888876
No 143
>PRK15331 chaperone protein SicA; Provisional
Probab=98.32 E-value=8.7e-06 Score=63.06 Aligned_cols=77 Identities=14% Similarity=0.023 Sum_probs=69.7
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCH
Q 030634 24 NYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDF 103 (174)
Q Consensus 24 al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~ 103 (174)
+..+.++..+..+..|.-+...|++ ++|...|+-....||.+++.|+.||.|+..++ +|
T Consensus 29 l~gis~~~le~iY~~Ay~~y~~Gk~----------~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k-----------~y 87 (165)
T PRK15331 29 VHGIPQDMMDGLYAHAYEFYNQGRL----------DEAETFFRFLCIYDFYNPDYTMGLAAVCQLKK-----------QF 87 (165)
T ss_pred HhCCCHHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHH-----------HH
Confidence 4446777788999999999999999 99999999999999999999999999999988 99
Q ss_pred HHHHHHHHHHHHhCCCCH
Q 030634 104 DKASECFQRAVDEEPTNE 121 (174)
Q Consensus 104 ~~Ai~~~~kAl~l~P~~~ 121 (174)
++|+..|..|..++++++
T Consensus 88 ~~Ai~~Y~~A~~l~~~dp 105 (165)
T PRK15331 88 QKACDLYAVAFTLLKNDY 105 (165)
T ss_pred HHHHHHHHHHHHcccCCC
Confidence 999999999888887766
No 144
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.31 E-value=7e-07 Score=78.70 Aligned_cols=95 Identities=18% Similarity=0.171 Sum_probs=89.0
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
..|+.|+..|.+|++++|+.+..+.+.+.+++..+.+ ..|+.-+.+|++++|....+|+..|.+.+.++
T Consensus 18 ~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~----------~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~- 86 (476)
T KOG0376|consen 18 KVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESF----------GGALHDALKAIELDPTYIKAYVRRGTAVMALG- 86 (476)
T ss_pred chHHHHHHHHHHHHhcCCcceeeechhhhhheeechh----------hhHHHHHHhhhhcCchhhheeeeccHHHHhHH-
Confidence 3789999999999999999999999999999999999 99999999999999999999999999999998
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al 127 (174)
.+.+|+..|++...+.|+...+++.+
T Consensus 87 ----------~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 87 ----------EFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred ----------HHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 99999999999999999998544443
No 145
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=1.1e-05 Score=71.44 Aligned_cols=138 Identities=17% Similarity=0.020 Sum_probs=107.1
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
|.++.|...|++++.-|....++++++|..+-.+|+. ++|+.+|-+.-.+--++.+.++.++++|..+.
T Consensus 504 gd~dka~~~ykeal~ndasc~ealfniglt~e~~~~l----------deald~f~klh~il~nn~evl~qianiye~le- 572 (840)
T KOG2003|consen 504 GDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNL----------DEALDCFLKLHAILLNNAEVLVQIANIYELLE- 572 (840)
T ss_pred CcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCH----------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh-
Confidence 5688899999999999999999999999999999998 99999999988888889999999999998877
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
+..+|++++-++..+=|+++ ++-...+..|-..+.-..|+.-|+.-+--
T Consensus 573 ----------d~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ 642 (840)
T KOG2003|consen 573 ----------DPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFS 642 (840)
T ss_pred ----------CHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHH
Confidence 99999999999999999988 23334456666677666666666543322
Q ss_pred -----------CCCCchhhHHHHHHHHHhhh
Q 030634 151 -----------GGGSSASSAQVNFCICVHQM 170 (174)
Q Consensus 151 -----------~~~~~~~~~~~~~~~~~~~~ 170 (174)
-..|.-+.-|.=.+-|+.+-
T Consensus 643 ekai~y~ekaaliqp~~~kwqlmiasc~rrs 673 (840)
T KOG2003|consen 643 EKAINYFEKAALIQPNQSKWQLMIASCFRRS 673 (840)
T ss_pred HHHHHHHHHHHhcCccHHHHHHHHHHHHHhc
Confidence 22255555555555565543
No 146
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.30 E-value=1.3e-06 Score=59.52 Aligned_cols=53 Identities=26% Similarity=0.466 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 56 KIINEAISKFEEALVIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 56 ~~~~eAi~~lekAl~ldP~--~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
+.+++|+..++++++.+|+ +...++.+|.+|+..| +|++|+..+++ ++.+|.+
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~-----------~y~~A~~~~~~-~~~~~~~ 57 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQG-----------KYEEAIELLQK-LKLDPSN 57 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTT-----------HHHHHHHHHHC-HTHHHCH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCC-----------CHHHHHHHHHH-hCCCCCC
Confidence 4559999999999999996 5677889999999999 99999999999 7777765
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=2e-05 Score=68.96 Aligned_cols=87 Identities=21% Similarity=0.132 Sum_probs=72.6
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG 90 (174)
.+++++|+..+++..+.+|. +...++.++...++- .+|+..+.++++.+|.+...+..-+..+...|
T Consensus 182 t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E----------~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 182 TQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEE----------VEAIRLLNEALKENPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred cccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcC
Confidence 45788999999998888865 566788888877766 89999999999999999888888888888877
Q ss_pred CCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+++.|+.+.++|+++.|++.
T Consensus 249 -----------~~~lAL~iAk~av~lsP~~f 268 (395)
T PF09295_consen 249 -----------KYELALEIAKKAVELSPSEF 268 (395)
T ss_pred -----------CHHHHHHHHHHHHHhCchhH
Confidence 99999998888877777654
No 148
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.28 E-value=7.8e-06 Score=71.51 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=75.6
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
.++.-.+|++...+++..+|.+++.+...+..++..+++ +.|+.+.++++++.|++...|+.|+.+|..+
T Consensus 212 ~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~----------~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~ 281 (395)
T PF09295_consen 212 LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKY----------ELALEIAKKAVELSPSEFETWYQLAECYIQL 281 (395)
T ss_pred hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhCchhHHHHHHHHHHHHhc
Confidence 345678999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCccchhhhhcCHHHHHHHHH
Q 030634 90 GFLTADLSEAKGDFDKASECFQ 111 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~ 111 (174)
| ++++|+..+.
T Consensus 282 ~-----------d~e~ALlaLN 292 (395)
T PF09295_consen 282 G-----------DFENALLALN 292 (395)
T ss_pred C-----------CHHHHHHHHh
Confidence 9 9999997555
No 149
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.28 E-value=8.7e-06 Score=66.69 Aligned_cols=71 Identities=18% Similarity=0.165 Sum_probs=66.2
Q ss_pred CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHhCCCCccchhhhhcCHHHH
Q 030634 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL---WSLGNAHTSCGFLTADLSEAKGDFDKA 106 (174)
Q Consensus 30 ~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~---~~LG~a~~~lG~~~~~~~~a~~~~~~A 106 (174)
.+++.++..|..+...|++ ++|+..|++++...|..+.+. +.+|.+|...| +|++|
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y----------~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~-----------~y~~A 88 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNW----------KQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-----------DLPLA 88 (243)
T ss_pred CCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-----------CHHHH
Confidence 3788899999999999999 999999999999999998765 89999999998 99999
Q ss_pred HHHHHHHHHhCCCCH
Q 030634 107 SECFQRAVDEEPTNE 121 (174)
Q Consensus 107 i~~~~kAl~l~P~~~ 121 (174)
+.+|++.+++.|+++
T Consensus 89 ~~~~e~fi~~~P~~~ 103 (243)
T PRK10866 89 QAAIDRFIRLNPTHP 103 (243)
T ss_pred HHHHHHHHHhCcCCC
Confidence 999999999999987
No 150
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.26 E-value=1.5e-06 Score=49.21 Aligned_cols=34 Identities=29% Similarity=0.604 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~ 75 (174)
+.+|+++|.++..+|++ ++|+.+|++|++++|++
T Consensus 1 a~~~~~~g~~~~~~~~~----------~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDY----------EEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCc----------hHHHHHHHHHHHHCcCC
Confidence 57899999999999999 99999999999999984
No 151
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.26 E-value=5.5e-06 Score=73.07 Aligned_cols=54 Identities=9% Similarity=-0.122 Sum_probs=51.3
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHH---HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADN---LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a---~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l 71 (174)
|-.+++|++|+..|+++++++|+++++ |+++|.+|..+|++ ++|+.++++|+++
T Consensus 85 L~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~----------dEAla~LrrALel 141 (453)
T PLN03098 85 LFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEG----------KKAADCLRTALRD 141 (453)
T ss_pred HHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHh
Confidence 567899999999999999999999965 99999999999999 9999999999998
No 152
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.22 E-value=5e-06 Score=69.86 Aligned_cols=91 Identities=22% Similarity=0.157 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~ 92 (174)
.+.+|...|++..+..|.++..++.++.+++.+|++ ++|...+++++..+|++++++.|+..+...+|
T Consensus 182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~----------~eAe~~L~~al~~~~~~~d~LaNliv~~~~~g-- 249 (290)
T PF04733_consen 182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHY----------EEAEELLEEALEKDPNDPDTLANLIVCSLHLG-- 249 (290)
T ss_dssp CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-H----------HHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT--
T ss_pred hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHhccCCHHHHHHHHHHHHHhC--
Confidence 467777788887777777888888888888888887 88888888888888888888888888888877
Q ss_pred ccchhhhhcCH-HHHHHHHHHHHHhCCCCHHHH
Q 030634 93 TADLSEAKGDF-DKASECFQRAVDEEPTNELYQ 124 (174)
Q Consensus 93 ~~~~~~a~~~~-~~Ai~~~~kAl~l~P~~~~y~ 124 (174)
+. +.+.+++.+.-..+|++++..
T Consensus 250 ---------k~~~~~~~~l~qL~~~~p~h~~~~ 273 (290)
T PF04733_consen 250 ---------KPTEAAERYLSQLKQSNPNHPLVK 273 (290)
T ss_dssp ----------TCHHHHHHHHHCHHHTTTSHHHH
T ss_pred ---------CChhHHHHHHHHHHHhCCCChHHH
Confidence 55 556677777777888887443
No 153
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.22 E-value=3.2e-06 Score=47.48 Aligned_cols=34 Identities=38% Similarity=0.620 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~ 75 (174)
+++|+.+|.++..+|++ ++|+.+|+++++++|+|
T Consensus 1 a~~~~~lg~~~~~~~~~----------~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNY----------EEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCcCC
Confidence 57899999999999999 99999999999999986
No 154
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.20 E-value=3.3e-06 Score=77.58 Aligned_cols=127 Identities=21% Similarity=0.229 Sum_probs=97.7
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---------hcCcccch---------hhhhhHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLE---------LSQFESVS---------DSKKIINEAISKFEEAL 69 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~---------~g~~~~~~---------~~~~~~~eAi~~lekAl 69 (174)
|.++|.-.+|.....+.++ .|+++..|..+|.+... .+++.++. -..+.++++..+|+..+
T Consensus 434 Y~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl 512 (777)
T KOG1128|consen 434 YLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSL 512 (777)
T ss_pred HHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHh
Confidence 4555555566666666666 78899999999886522 22221111 12467899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------HHHHHHh
Q 030634 70 VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLE 128 (174)
Q Consensus 70 ~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------------------~y~~Al~ 128 (174)
+++|-....||++|.+..+++ ++..|.++|.+++.++|++. ...+|+.
T Consensus 513 ~~nplq~~~wf~~G~~ALqle-----------k~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlK 581 (777)
T KOG1128|consen 513 EINPLQLGTWFGLGCAALQLE-----------KEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALK 581 (777)
T ss_pred hcCccchhHHHhccHHHHHHh-----------hhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhh
Confidence 999999999999999999988 99999999999999999998 5567888
Q ss_pred cCCCChHHHHHHHHHHHh
Q 030634 129 VSTKAPELHMELHKHGIN 146 (174)
Q Consensus 129 l~~~~~~~~~~l~~~~~~ 146 (174)
-+.+.+..+.|...+...
T Consensus 582 cn~~~w~iWENymlvsvd 599 (777)
T KOG1128|consen 582 CNYQHWQIWENYMLVSVD 599 (777)
T ss_pred cCCCCCeeeechhhhhhh
Confidence 887777777776655544
No 155
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.17 E-value=6.7e-05 Score=63.89 Aligned_cols=104 Identities=16% Similarity=0.188 Sum_probs=73.3
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch-----------------------------hhhhh
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-----------------------------DSKKI 57 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~-----------------------------~~~~~ 57 (174)
||-+-|.++.|...|...++..---..++-.|-.+|....+++.+. ...+.
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 5555555555555555555444444455555555554443332211 11234
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+.|+..+++|++-||++..+=..+|.+....| +|++|++.++++++.||+..
T Consensus 196 ~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g-----------~y~~AV~~~e~v~eQn~~yl 248 (389)
T COG2956 196 VDRARELLKKALQADKKCVRASIILGRVELAKG-----------DYQKAVEALERVLEQNPEYL 248 (389)
T ss_pred HHHHHHHHHHHHhhCccceehhhhhhHHHHhcc-----------chHHHHHHHHHHHHhChHHH
Confidence 588999999999999999999999999999988 99999999999999999765
No 156
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.12 E-value=3.1e-06 Score=48.65 Aligned_cols=28 Identities=11% Similarity=0.232 Sum_probs=27.1
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcCc
Q 030634 21 AEANYAKDPLDADNLTRWGEALLELSQF 48 (174)
Q Consensus 21 ~~~al~~~P~~~~a~~~lg~~l~~~g~~ 48 (174)
|+++++++|+++.+|+++|.+|...|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~ 29 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDY 29 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCH
Confidence 7899999999999999999999999998
No 157
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.11 E-value=0.0001 Score=55.71 Aligned_cols=102 Identities=16% Similarity=0.066 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHH
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH----YTLWSLGNAHT 87 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~----~a~~~LG~a~~ 87 (174)
|..+.|++.|.+++.+-|..+.+|++.+.++...|+. ++|+.-+++|+++.-+.. .++...|.+|.
T Consensus 57 g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~----------e~ALdDLn~AleLag~~trtacqa~vQRg~lyR 126 (175)
T KOG4555|consen 57 GDLDGALELFGQALCLAPERASAYNNRAQALRLQGDD----------EEALDDLNKALELAGDQTRTACQAFVQRGLLYR 126 (175)
T ss_pred cchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCCh----------HHHHHHHHHHHHhcCccchHHHHHHHHHHHHHH
Confidence 5788999999999999999999999999999999888 999999999999955443 35788999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPE 135 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~ 135 (174)
.+| +.++|..-|..|-++-...+. ++...+||=+..
T Consensus 127 l~g-----------~dd~AR~DFe~AA~LGS~FAr-~QLV~lNPYAAl 162 (175)
T KOG4555|consen 127 LLG-----------NDDAARADFEAAAQLGSKFAR-EQLVELNPYAAL 162 (175)
T ss_pred HhC-----------chHHHHHhHHHHHHhCCHHHH-HHHHhcChHHHH
Confidence 988 999999999998888664332 234466654443
No 158
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.09 E-value=3.3e-05 Score=73.46 Aligned_cols=114 Identities=11% Similarity=0.063 Sum_probs=86.5
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch----------hhhhhHHHHHHHHHHHHHhCCCCH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS----------DSKKIINEAISKFEEALVIDPAKH 76 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~----------~~~~~~~eAi~~lekAl~ldP~~~ 76 (174)
-|+++|..++|...++++++.+|+++.+++++|..|... +.+.+. -+.+++.++...+++.+..+|++.
T Consensus 125 ~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~~~d~ 203 (906)
T PRK14720 125 AYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYNSDDF 203 (906)
T ss_pred HHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcCcccc
Confidence 489999999999999999999999999999999999887 653221 123456777777888888899988
Q ss_pred HHHHHHHHH-HHhCC--CC----cc--chhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 77 YTLWSLGNA-HTSCG--FL----TA--DLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 77 ~a~~~LG~a-~~~lG--~~----~~--~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+.++.+=.. ....| +. .| ..+...++|++++..++++|+++|+|.
T Consensus 204 d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~ 257 (906)
T PRK14720 204 DFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNN 257 (906)
T ss_pred hHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcch
Confidence 875543332 22222 11 11 444556799999999999999999988
No 159
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=98.06 E-value=1.5e-05 Score=47.98 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (174)
Q Consensus 76 ~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al 127 (174)
|.+|+.+|.+|..+| ++++|+++|+++++.+|++...+..+
T Consensus 1 p~~~~~la~~~~~~G-----------~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 1 PAAWLALARAYRRLG-----------QPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred CHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 468999999999999 99999999999999999988655544
No 160
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=98.03 E-value=1.1e-05 Score=45.45 Aligned_cols=33 Identities=30% Similarity=0.621 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
.+|+.+|.+|..+| ++++|+.+|+++++++|+|
T Consensus 2 ~~~~~lg~~y~~~~-----------~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLG-----------DYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-----------SHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCC
Confidence 57999999999999 9999999999999999964
No 161
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.01 E-value=5.5e-05 Score=59.98 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=60.1
Q ss_pred CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCccchhhhhcCHHHHH
Q 030634 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (174)
Q Consensus 31 ~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai 107 (174)
+++.++..|..++..|++ .+|+..|++++...|..+ .+.+.+|.++...| +|++|+
T Consensus 4 ~~~~lY~~a~~~~~~g~y----------~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-----------~y~~A~ 62 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDY----------EEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-----------DYEEAI 62 (203)
T ss_dssp -HHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT------------HHHHH
T ss_pred CHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-----------CHHHHH
Confidence 578899999999999999 999999999999988754 68999999999999 999999
Q ss_pred HHHHHHHHhCCCCH
Q 030634 108 ECFQRAVDEEPTNE 121 (174)
Q Consensus 108 ~~~~kAl~l~P~~~ 121 (174)
..|++-++..|+++
T Consensus 63 ~~~~~fi~~yP~~~ 76 (203)
T PF13525_consen 63 AAYERFIKLYPNSP 76 (203)
T ss_dssp HHHHHHHHH-TT-T
T ss_pred HHHHHHHHHCCCCc
Confidence 99999999999987
No 162
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.00 E-value=8.9e-05 Score=56.18 Aligned_cols=70 Identities=21% Similarity=0.298 Sum_probs=64.5
Q ss_pred CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCccchhhhhcCHHHHH
Q 030634 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (174)
Q Consensus 31 ~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai 107 (174)
.+..++.-|...+..|++ ++|++.|+......|-.+ .+.+.||.+|+..| +|++|+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y----------~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~-----------~y~~A~ 67 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNY----------EEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQG-----------DYEEAI 67 (142)
T ss_pred CHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHcc-----------CHHHHH
Confidence 578899999999999999 999999999999988755 67899999999988 999999
Q ss_pred HHHHHHHHhCCCCH
Q 030634 108 ECFQRAVDEEPTNE 121 (174)
Q Consensus 108 ~~~~kAl~l~P~~~ 121 (174)
..+++=++++|+++
T Consensus 68 a~~~rFirLhP~hp 81 (142)
T PF13512_consen 68 AAYDRFIRLHPTHP 81 (142)
T ss_pred HHHHHHHHhCCCCC
Confidence 99999999999876
No 163
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.99 E-value=7.6e-05 Score=62.73 Aligned_cols=109 Identities=16% Similarity=0.127 Sum_probs=80.0
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC--cccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ--FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~--~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a 85 (174)
|=++++++.|.+.++..-+.+.++.-....-+.+.+..|. + .+|...|++..+..|.++..+..++.+
T Consensus 141 ~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~----------~~A~y~f~El~~~~~~t~~~lng~A~~ 210 (290)
T PF04733_consen 141 LLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKY----------QDAFYIFEELSDKFGSTPKLLNGLAVC 210 (290)
T ss_dssp HHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCC----------CHHHHHHHHHHCCS--SHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhH----------HHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 3467899999999999888877766555555555555554 5 899999999888888999999999999
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
+..+| +|++|...+++|++.+|+ +|++..|++++..-+|..
T Consensus 211 ~l~~~-----------~~~eAe~~L~~al~~~~~-------------~~d~LaNliv~~~~~gk~ 251 (290)
T PF04733_consen 211 HLQLG-----------HYEEAEELLEEALEKDPN-------------DPDTLANLIVCSLHLGKP 251 (290)
T ss_dssp HHHCT------------HHHHHHHHHHHCCC-CC-------------HHHHHHHHHHHHHHTT-T
T ss_pred HHHhC-----------CHHHHHHHHHHHHHhccC-------------CHHHHHHHHHHHHHhCCC
Confidence 99999 999999988886665554 566777777766665544
No 164
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=9.8e-05 Score=60.98 Aligned_cols=93 Identities=15% Similarity=0.205 Sum_probs=80.6
Q ss_pred HHhhhhHHHHHHHHHHHHhh--------CCCCHHH----------HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAK--------DPLDADN----------LTRWGEALLELSQFESVSDSKKIINEAISKFEEAL 69 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~--------~P~~~~a----------~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl 69 (174)
+=++++|+||...|+.|+-. .|.++++ +.|.+.|++..|++ -+++++-..+|
T Consensus 188 lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~----------yevleh~seiL 257 (329)
T KOG0545|consen 188 LFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEY----------YEVLEHCSEIL 257 (329)
T ss_pred hhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHH----------HHHHHHHHHHH
Confidence 34678899999999888763 6777774 47778888888888 99999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 70 VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 70 ~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
..+|.+..|+|..|.++...= +..+|..-|+++|+++|.-.
T Consensus 258 ~~~~~nvKA~frRakAhaa~W-----------n~~eA~~D~~~vL~ldpsla 298 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVW-----------NEAEAKADLQKVLELDPSLA 298 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhc-----------CHHHHHHHHHHHHhcChhhH
Confidence 999999999999999998866 89999999999999999765
No 165
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.94 E-value=0.00021 Score=56.96 Aligned_cols=84 Identities=25% Similarity=0.368 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHH-HhCCCCHHHHHHHHHHHHhCCCC
Q 030634 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL-VIDPAKHYTLWSLGNAHTSCGFL 92 (174)
Q Consensus 14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl-~ldP~~~~a~~~LG~a~~~lG~~ 92 (174)
-+..++.+.+.+++.|.. .-.+.||+++.++|++ .||..+|++++ -+..+++..+..+++++...+
T Consensus 72 P~R~~Rea~~~~~~ApTv-qnr~rLa~al~elGr~----------~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~-- 138 (251)
T COG4700 72 PERHLREATEELAIAPTV-QNRYRLANALAELGRY----------HEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQ-- 138 (251)
T ss_pred hhHHHHHHHHHHhhchhH-HHHHHHHHHHHHhhhh----------hhhHHHHHHHhccccCCCHHHHHHHHHHHHhhc--
Confidence 334444444444444543 2345555555555555 55555555555 344555555555555555555
Q ss_pred ccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634 93 TADLSEAKGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 93 ~~~~~~a~~~~~~Ai~~~~kAl~l~P~ 119 (174)
++..|...+++..+-+|.
T Consensus 139 ---------~~A~a~~tLe~l~e~~pa 156 (251)
T COG4700 139 ---------EFAAAQQTLEDLMEYNPA 156 (251)
T ss_pred ---------cHHHHHHHHHHHhhcCCc
Confidence 555555555555555443
No 166
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.91 E-value=0.00025 Score=60.46 Aligned_cols=89 Identities=15% Similarity=0.143 Sum_probs=82.8
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHhCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH-YTLWSLGNAHTSCG 90 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~-~a~~~LG~a~~~lG 90 (174)
..++.|+....+|+..||+...+-..+|.+....|++ +.|++.++.+++.||+.. ++.-.|-.||..+|
T Consensus 194 ~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y----------~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg 263 (389)
T COG2956 194 SDVDRARELLKKALQADKKCVRASIILGRVELAKGDY----------QKAVEALERVLEQNPEYLSEVLEMLYECYAQLG 263 (389)
T ss_pred hhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccch----------HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhC
Confidence 4677899999999999999999999999999999999 999999999999999976 57778999999999
Q ss_pred CCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 91 FLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+.++.+..+.++.+.+|+..
T Consensus 264 -----------~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 264 -----------KPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred -----------CHHHHHHHHHHHHHccCCcc
Confidence 99999999999999998877
No 167
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.90 E-value=0.001 Score=48.46 Aligned_cols=121 Identities=24% Similarity=0.290 Sum_probs=87.4
Q ss_pred hHHhhhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYA--KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~--~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
.+...+.+.++...+..... ..+.....+..+|......+.+ .+++..+.+++..++.+.......+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~ 137 (291)
T COG0457 68 ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKY----------EEALELLEKALALDPDPDLAEALLAL 137 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhH----------HHHHHHHHHHHcCCCCcchHHHHHHH
Confidence 34455667777777777776 6788888888888888887777 88888888888887777666666666
Q ss_pred -HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC--CH----------------------HHHHHHhcCCC-ChHHHH
Q 030634 85 -AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT--NE----------------------LYQKSLEVSTK-APELHM 138 (174)
Q Consensus 85 -a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~--~~----------------------~y~~Al~l~~~-~~~~~~ 138 (174)
++...| ++++|+.+|.+++..+|. .. .+.+++...+. ....+.
T Consensus 138 ~~~~~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 206 (291)
T COG0457 138 GALYELG-----------DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALL 206 (291)
T ss_pred HHHHHcC-----------CHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHH
Confidence 777777 888888888888777763 11 45556666666 566677
Q ss_pred HHHHHHHhcc
Q 030634 139 ELHKHGINQQ 148 (174)
Q Consensus 139 ~l~~~~~~~~ 148 (174)
+++..+...+
T Consensus 207 ~~~~~~~~~~ 216 (291)
T COG0457 207 NLGLLYLKLG 216 (291)
T ss_pred HhhHHHHHcc
Confidence 7777776665
No 168
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.88 E-value=0.00012 Score=66.22 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=82.9
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
-|+++|.+++|+...+++++..|..++.+...|.++-..|++ ++|...++.|..+|+.|--+-...+..+
T Consensus 203 hyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~----------~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~ 272 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDL----------KEAAEAMDEARELDLADRYINSKCAKYL 272 (517)
T ss_pred HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHhCChhhHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999 9999999999999999998888888888
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
.+.| +.++|.+.+..=.+-+
T Consensus 273 LRa~-----------~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 273 LRAG-----------RIEEAEKTASLFTRED 292 (517)
T ss_pred HHCC-----------CHHHHHHHHHhhcCCC
Confidence 8988 9999998877765544
No 169
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.86 E-value=0.0002 Score=59.33 Aligned_cols=86 Identities=23% Similarity=0.304 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHH
Q 030634 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC 109 (174)
Q Consensus 33 ~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~ 109 (174)
+-.|+.|.-++..|+| .+|...|.+-++..|++. .|+|-||.+++.+| +|+.|...
T Consensus 142 ~~~Y~~A~~~~ksgdy----------~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg-----------~y~~Aa~~ 200 (262)
T COG1729 142 TKLYNAALDLYKSGDY----------AEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQG-----------DYEDAAYI 200 (262)
T ss_pred hHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcc-----------cchHHHHH
Confidence 3489999999999999 999999999999999965 78999999999999 99999999
Q ss_pred HHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhccc
Q 030634 110 FQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQT 149 (174)
Q Consensus 110 ~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~ 149 (174)
|.++++-.|+ .|++|+....||.+....|-
T Consensus 201 f~~~~k~~P~----------s~KApdallKlg~~~~~l~~ 230 (262)
T COG1729 201 FARVVKDYPK----------SPKAPDALLKLGVSLGRLGN 230 (262)
T ss_pred HHHHHHhCCC----------CCCChHHHHHHHHHHHHhcC
Confidence 9999999986 57788888888887776654
No 170
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=97.84 E-value=4.9e-06 Score=70.98 Aligned_cols=91 Identities=16% Similarity=0.099 Sum_probs=85.0
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
..|.|..|+..+-.++.++|..+..+.+.|.+++.+++. ..||.-+..|+++||+...-|-..|.+...+
T Consensus 126 n~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp----------~~airD~d~A~ein~Dsa~~ykfrg~A~rll 195 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKP----------NAAIRDCDFAIEINPDSAKGYKFRGYAERLL 195 (377)
T ss_pred cCcchhhhhcccccccccCCchhhhcccccceeeeccCC----------chhhhhhhhhhccCcccccccchhhHHHHHh
Confidence 346799999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
| ++++|...++.+.+++=+-.
T Consensus 196 g-----------~~e~aa~dl~~a~kld~dE~ 216 (377)
T KOG1308|consen 196 G-----------NWEEAAHDLALACKLDYDEA 216 (377)
T ss_pred h-----------chHHHHHHHHHHHhccccHH
Confidence 9 99999999999999876544
No 171
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.83 E-value=2.5e-05 Score=51.96 Aligned_cols=56 Identities=23% Similarity=0.266 Sum_probs=46.9
Q ss_pred hHHhhhhHHHHHHHHHHHHhh---C----CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC
Q 030634 7 DFDRLLLSEHNRKTAEANYAK---D----PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID 72 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~---~----P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld 72 (174)
-|.++++|++|+..+++++++ . |.-+.++.++|.++..+|++ ++|+..+++++++.
T Consensus 14 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~al~i~ 76 (78)
T PF13424_consen 14 VYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDY----------EEALEYYQKALDIF 76 (78)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHH----------HHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhh
Confidence 367899999999999999975 2 22366899999999999999 99999999999863
No 172
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.83 E-value=0.00038 Score=50.76 Aligned_cols=91 Identities=26% Similarity=0.371 Sum_probs=70.5
Q ss_pred HHhhhhHHHHHHHHHHHHhhCC---CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDP---LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-KHYTLWSLG 83 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P---~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~-~~~a~~~LG 83 (174)
+..++.+++|...+.+++..+| .........+..+...+++ ++|+..+.++++..|. ....+..++
T Consensus 140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~a~~~~~~~~~~~~~~~~~~~~~~~ 209 (291)
T COG0457 140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRY----------EEALELLEKALKLNPDDDAEALLNLG 209 (291)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH----------HHHHHHHHHHHhhCcccchHHHHHhh
Confidence 5567778888888888877776 3555666666666666666 8888888888888888 688888888
Q ss_pred HHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634 84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 84 ~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~ 119 (174)
..+...| ++++|+..+.+++...|+
T Consensus 210 ~~~~~~~-----------~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 210 LLYLKLG-----------KYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHcc-----------cHHHHHHHHHHHHhhCcc
Confidence 8888877 888888888888888887
No 173
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=97.82 E-value=0.00029 Score=64.80 Aligned_cols=111 Identities=21% Similarity=0.176 Sum_probs=78.1
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch-----------------------hhhhhHHHHHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-----------------------DSKKIINEAISKFEE 67 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~-----------------------~~~~~~~eAi~~lek 67 (174)
-|...+|+..+..+++.+|++.++|+..-.+.....+++.+. -..+..++|+..+++
T Consensus 597 agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe 676 (913)
T KOG0495|consen 597 AGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEE 676 (913)
T ss_pred cCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHH
Confidence 367778888888888888988888876655555444443211 113456999999999
Q ss_pred HHHhCCCCHHHHHHHHHHHHhCCC-------------C----------ccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 68 ALVIDPAKHYTLWSLGNAHTSCGF-------------L----------TADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 68 Al~ldP~~~~a~~~LG~a~~~lG~-------------~----------~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+|+..|+.+..|+.+|.++..++. . .....|..+..-+|...+.++.-.||++.
T Consensus 677 ~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~ 753 (913)
T KOG0495|consen 677 ALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNA 753 (913)
T ss_pred HHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcc
Confidence 999999999999999999988771 0 12333445555566666666666666665
No 174
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.82 E-value=0.00029 Score=61.02 Aligned_cols=120 Identities=15% Similarity=0.125 Sum_probs=99.0
Q ss_pred hhHHhhhhHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 6 SDFDRLLLSEHNRKTAEANYAKDPLDA-DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 6 ~~~~~~~~~~eAl~~~~~al~~~P~~~-~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
.||=+-..|+.|+..++-....+-... +.-.++|.|++.+|++ ++|+..|+-+...+--+.+.+.+|+.
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY----------~~Al~~Y~~~~~~~~~~~el~vnLAc 99 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDY----------EEALNVYTFLMNKDDAPAELGVNLAC 99 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccH----------HHHHHHHHHHhccCCCCcccchhHHH
Confidence 456666788999999998887765543 6778899999999999 99999999999988888899999999
Q ss_pred HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-----HHHHHHhcCCCC--hHHHHHHHHHHHhcccc
Q 030634 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----LYQKSLEVSTKA--PELHMELHKHGINQQTL 150 (174)
Q Consensus 85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-----~y~~Al~l~~~~--~~~~~~l~~~~~~~~~~ 150 (174)
++..+| .|.+|.....+ -|+++ .+..+.+++.+. ..+|.+|+.+...|-++
T Consensus 100 c~FyLg-----------~Y~eA~~~~~k----a~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSL 157 (557)
T KOG3785|consen 100 CKFYLG-----------QYIEAKSIAEK----APKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSL 157 (557)
T ss_pred HHHHHH-----------HHHHHHHHHhh----CCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhH
Confidence 999999 99999887766 68877 556677777554 44888998888777666
No 175
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.77 E-value=0.0003 Score=66.15 Aligned_cols=89 Identities=20% Similarity=0.175 Sum_probs=84.0
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
+.|..|++...+.++..|+.+-+....|.++.++|+. ++|..+++..-..-|+|...+-.+-.+|..+|
T Consensus 23 ~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~----------~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~- 91 (932)
T KOG2053|consen 23 SQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKG----------DEALKLLEALYGLKGTDDLTLQFLQNVYRDLG- 91 (932)
T ss_pred HHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCc----------hhHHHHHhhhccCCCCchHHHHHHHHHHHHHh-
Confidence 5899999999999999999999999999999999999 99999999888888899999999999999998
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+++|..+|++++..+|+..
T Consensus 92 ----------~~d~~~~~Ye~~~~~~P~ee 111 (932)
T KOG2053|consen 92 ----------KLDEAVHLYERANQKYPSEE 111 (932)
T ss_pred ----------hhhHHHHHHHHHHhhCCcHH
Confidence 99999999999999999944
No 176
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=97.72 E-value=0.00013 Score=66.26 Aligned_cols=131 Identities=20% Similarity=0.153 Sum_probs=101.1
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCH-HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDA-DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~-~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
-+|.-..|.++++.|+...|... ....+|+.+++..|-. .+|-..+.++|.++-..|-.++.+|+++..
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~----------~da~~~l~q~l~~~~sepl~~~~~g~~~l~ 688 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLH----------LDATKLLLQALAINSSEPLTFLSLGNAYLA 688 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhh----------ccHHHHHHHHHhhcccCchHHHhcchhHHH
Confidence 46778899999999999999854 4688999999998877 899999999999999999999999999999
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHH--HhccccCCCCchhhHHHH
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHG--INQQTLGGGSSASSAQVN 162 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~ 162 (174)
+. +.++|+++|+.|++++|++..++..|.+..= -.++..+.++. .+.|+.+.+|.-+++--|
T Consensus 689 l~-----------~i~~a~~~~~~a~~~~~~~~~~~~~l~~i~c-~~~~~~~~~~~~svc~~~ive~sn~~d~~~n 752 (886)
T KOG4507|consen 689 LK-----------NISGALEAFRQALKLTTKCPECENSLKLIRC-MQFYPFLYNITSSVCSGTVVEESNGSDEMEN 752 (886)
T ss_pred Hh-----------hhHHHHHHHHHHHhcCCCChhhHHHHHHHHH-hhhhhHHHhccccceeeeeeecCCCcchhhc
Confidence 88 9999999999999999999977766543111 23444444432 344555544444444433
No 177
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.70 E-value=0.00017 Score=62.49 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=87.4
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchh----------------------------------
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD---------------------------------- 53 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~---------------------------------- 53 (174)
|=++|.|++|+..|..+...+-.+.+.+.+++.+++.+|.+.++..
T Consensus 67 ~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~ 146 (557)
T KOG3785|consen 67 YFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSS 146 (557)
T ss_pred HHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHH
Confidence 4578999999999999999988899999999999999998853110
Q ss_pred ----------------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 54 ----------------SKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 54 ----------------~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
...-+++||..|.+++.-+|+....-.+++.||+++. .|+-+-+.++--|+.-
T Consensus 147 LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlD-----------Yydvsqevl~vYL~q~ 215 (557)
T KOG3785|consen 147 LQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLD-----------YYDVSQEVLKVYLRQF 215 (557)
T ss_pred HhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcc-----------hhhhHHHHHHHHHHhC
Confidence 0112799999999999999998888889999999987 8888888888888888
Q ss_pred CCCH
Q 030634 118 PTNE 121 (174)
Q Consensus 118 P~~~ 121 (174)
|+++
T Consensus 216 pdSt 219 (557)
T KOG3785|consen 216 PDST 219 (557)
T ss_pred CCcH
Confidence 8887
No 178
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.69 E-value=6.7e-05 Score=42.11 Aligned_cols=34 Identities=29% Similarity=0.550 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~ 75 (174)
+++|+.+|.++..+|++ ++|+..|+++++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~----------~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDY----------EEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSH----------HHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCC
Confidence 36899999999999999 99999999999999964
No 179
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.69 E-value=7.9e-05 Score=64.19 Aligned_cols=87 Identities=18% Similarity=0.200 Sum_probs=71.9
Q ss_pred HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (174)
Q Consensus 36 ~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~ 115 (174)
--.|+-|+.+|+| ++||.||.+++.++|.++-.+.|.+.+|.++. .|..|..-+..|+.
T Consensus 101 KE~GN~yFKQgKy----------~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K-----------~FA~AE~DC~~Aia 159 (536)
T KOG4648|consen 101 KERGNTYFKQGKY----------EEAIDCYSTAIAVYPHNPVYHINRALAYLKQK-----------SFAQAEEDCEAAIA 159 (536)
T ss_pred HHhhhhhhhccch----------hHHHHHhhhhhccCCCCccchhhHHHHHHHHH-----------HHHHHHHhHHHHHH
Confidence 4467888888888 99999999999999999999999999999987 88888888888888
Q ss_pred hCCCCH---------------------HHHHHHhcCCCChHHHHHHHHH
Q 030634 116 EEPTNE---------------------LYQKSLEVSTKAPELHMELHKH 143 (174)
Q Consensus 116 l~P~~~---------------------~y~~Al~l~~~~~~~~~~l~~~ 143 (174)
+|-.+. -|+.+|++-|+..++.-.++.+
T Consensus 160 Ld~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i 208 (536)
T KOG4648|consen 160 LDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPKNIELKKSLARI 208 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcccHHHHHHHHHh
Confidence 876554 5677888888877765555544
No 180
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.69 E-value=0.00091 Score=60.74 Aligned_cols=130 Identities=18% Similarity=0.155 Sum_probs=97.4
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchh-----------------------hhhhHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD-----------------------SKKIINEAIS 63 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~-----------------------~~~~~~eAi~ 63 (174)
-+...+.|++|++.+.+.+...|++++++.-.-.+++..++|+.++. ..++.++|+.
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk 100 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALK 100 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHH
Confidence 34566799999999999999999999999999999999888854221 1345677777
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH------------HHHH--HHhc
Q 030634 64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------LYQK--SLEV 129 (174)
Q Consensus 64 ~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------~y~~--Al~l 129 (174)
+++ -+|+.+..+....|.+++.+| +|++|++.|+..++-+-++. .-.. .++.
T Consensus 101 ~~~---~~~~~~~~ll~L~AQvlYrl~-----------~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~ 166 (652)
T KOG2376|consen 101 TLK---GLDRLDDKLLELRAQVLYRLE-----------RYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQS 166 (652)
T ss_pred HHh---cccccchHHHHHHHHHHHHHh-----------hHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHh
Confidence 777 567777778888888888888 99999999999988776655 0011 1344
Q ss_pred CCCChH----HHHHHHHHHHhcccc
Q 030634 130 STKAPE----LHMELHKHGINQQTL 150 (174)
Q Consensus 130 ~~~~~~----~~~~l~~~~~~~~~~ 150 (174)
+|..++ ..+|.+-++++.|-.
T Consensus 167 v~~v~e~syel~yN~Ac~~i~~gky 191 (652)
T KOG2376|consen 167 VPEVPEDSYELLYNTACILIENGKY 191 (652)
T ss_pred ccCCCcchHHHHHHHHHHHHhcccH
Confidence 444443 677777777777765
No 181
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.68 E-value=0.00027 Score=53.41 Aligned_cols=87 Identities=17% Similarity=0.103 Sum_probs=71.0
Q ss_pred HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (174)
Q Consensus 34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA 113 (174)
.+-..|+++.+.|+. +.|++.|.++|.+-|+.+.+|.|.+.++..+| +.++|++-+.+|
T Consensus 45 ~LEl~~valaE~g~L----------d~AlE~F~qal~l~P~raSayNNRAQa~RLq~-----------~~e~ALdDLn~A 103 (175)
T KOG4555|consen 45 ELELKAIALAEAGDL----------DGALELFGQALCLAPERASAYNNRAQALRLQG-----------DDEEALDDLNKA 103 (175)
T ss_pred HHHHHHHHHHhccch----------HHHHHHHHHHHHhcccchHhhccHHHHHHHcC-----------ChHHHHHHHHHH
Confidence 345668888888888 99999999999999999999999999999999 999999999999
Q ss_pred HHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 114 VDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 114 l~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
+++.-+-.. .....|..-|.+|.-+|+.
T Consensus 104 leLag~~tr---------tacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 104 LELAGDQTR---------TACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHhcCccch---------HHHHHHHHHHHHHHHhCch
Confidence 998655331 1234566666677666665
No 182
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.61 E-value=0.0003 Score=57.28 Aligned_cols=69 Identities=30% Similarity=0.338 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHH
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ 111 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~ 111 (174)
+..++-.|+.|..+|-. .-|.--|.+++.+.|+-++++..||.-+...| +|+.|.+.|.
T Consensus 65 A~l~fERGvlYDSlGL~----------~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~-----------~fdaa~eaFd 123 (297)
T COG4785 65 AQLLFERGVLYDSLGLR----------ALARNDFSQALAIRPDMPEVFNYLGIYLTQAG-----------NFDAAYEAFD 123 (297)
T ss_pred HHHHHHhcchhhhhhHH----------HHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcc-----------cchHHHHHhh
Confidence 44555666666555554 88999999999999999999999999999988 9999999999
Q ss_pred HHHHhCCCCH
Q 030634 112 RAVDEEPTNE 121 (174)
Q Consensus 112 kAl~l~P~~~ 121 (174)
-.+++||.+.
T Consensus 124 s~~ELDp~y~ 133 (297)
T COG4785 124 SVLELDPTYN 133 (297)
T ss_pred hHhccCCcch
Confidence 9999999987
No 183
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.56 E-value=0.00011 Score=64.70 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=87.5
Q ss_pred hHHhhhhHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhcCccc----------chhhhhhHHHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKD------PLDADNLTRWGEALLELSQFES----------VSDSKKIINEAISKFEEALV 70 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~------P~~~~a~~~lg~~l~~~g~~~~----------~~~~~~~~~eAi~~lekAl~ 70 (174)
.++.+|.|++|+..+.+-+.+. -....++|++|++|...|+.-. ..+.+..++.|++.|+.-|+
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999998887753 2356799999999998887521 12334567888888888887
Q ss_pred hCCCCH------HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCh--HHHHHHHH
Q 030634 71 IDPAKH------YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAP--ELHMELHK 142 (174)
Q Consensus 71 ldP~~~------~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~--~~~~~l~~ 142 (174)
+..+.. .++-+||+.|+.+| +|++||.+-+.-|++.... -..+. .+|.|||+
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLG-----------df~~ai~~H~~RL~ia~ef---------GDrAaeRRA~sNlgN 243 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLG-----------DFDQAIHFHKLRLEIAQEF---------GDRAAERRAHSNLGN 243 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeec-----------cHHHHHHHHHHHHHHHHHh---------hhHHHHHHhhcccch
Confidence 755533 35678999999999 9999999888866664432 22222 25666666
Q ss_pred HHHhcccc
Q 030634 143 HGINQQTL 150 (174)
Q Consensus 143 ~~~~~~~~ 150 (174)
+++-.|-.
T Consensus 244 ~hiflg~f 251 (639)
T KOG1130|consen 244 CHIFLGNF 251 (639)
T ss_pred hhhhhccc
Confidence 66655443
No 184
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=97.53 E-value=0.0089 Score=50.82 Aligned_cols=92 Identities=16% Similarity=0.186 Sum_probs=74.7
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcCccc--chhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccch
Q 030634 19 KTAEANYAKDPLDADNLTRWGEALLELSQFES--VSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADL 96 (174)
Q Consensus 19 ~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~--~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~ 96 (174)
..+++.++.+|.|.++|..+.......-.... ........+.-+.+|++||+.+|++...+..+-.+.....
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~------ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVW------ 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhC------
Confidence 56788899999999999999988776654322 1233445688899999999999999998877766666765
Q ss_pred hhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 97 SEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 97 ~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+-++...-+++++..+|++.
T Consensus 80 -----~~~~l~~~we~~l~~~~~~~ 99 (321)
T PF08424_consen 80 -----DSEKLAKKWEELLFKNPGSP 99 (321)
T ss_pred -----CHHHHHHHHHHHHHHCCCCh
Confidence 88888999999999999988
No 185
>PLN03077 Protein ECB2; Provisional
Probab=97.50 E-value=0.0018 Score=61.35 Aligned_cols=127 Identities=7% Similarity=-0.004 Sum_probs=80.9
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCccc-------------------------chhhhhhHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFES-------------------------VSDSKKIINEAI 62 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~-------------------------~~~~~~~~~eAi 62 (174)
|-+.|..++|++.+... +.|..+|+.+...|...|+.+. +....|.+++|.
T Consensus 534 y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~ 609 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGL 609 (857)
T ss_pred HHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHH
Confidence 55566667776666654 5566667777666666666521 001123346666
Q ss_pred HHHHHHHHhCCC--CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-------------------
Q 030634 63 SKFEEALVIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE------------------- 121 (174)
Q Consensus 63 ~~lekAl~ldP~--~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------------- 121 (174)
..|+...+..+- +...|..+..+|.+.| ++++|.+.+++. .+.|+..
T Consensus 610 ~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G-----------~~~eA~~~~~~m-~~~pd~~~~~aLl~ac~~~~~~e~~e 677 (857)
T PLN03077 610 EYFHSMEEKYSITPNLKHYACVVDLLGRAG-----------KLTEAYNFINKM-PITPDPAVWGALLNACRIHRHVELGE 677 (857)
T ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhCC-----------CHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCChHHHH
Confidence 666665533222 2345566666666666 788888877764 3566544
Q ss_pred -HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 122 -LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 122 -~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
..++.+++.|+++..|.-|+++|-..|+.
T Consensus 678 ~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~ 707 (857)
T PLN03077 678 LAAQHIFELDPNSVGYYILLCNLYADAGKW 707 (857)
T ss_pred HHHHHHHhhCCCCcchHHHHHHHHHHCCCh
Confidence 34567789999999999999999888876
No 186
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.49 E-value=0.00023 Score=41.02 Aligned_cols=32 Identities=31% Similarity=0.609 Sum_probs=25.5
Q ss_pred HHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH--HhCCCC
Q 030634 78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV--DEEPTN 120 (174)
Q Consensus 78 a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl--~l~P~~ 120 (174)
+|.+||.+|..+| +|++|+.+|+++| ..+|++
T Consensus 1 al~~Lg~~~~~~g-----------~~~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQG-----------DYEKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT------------HHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhcccccC
Confidence 5789999999999 9999999999955 445543
No 187
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.46 E-value=0.00084 Score=54.13 Aligned_cols=66 Identities=27% Similarity=0.340 Sum_probs=56.0
Q ss_pred HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH-----HHHHHHHHHHhCCCCccchhhhhcCHHHHHHH
Q 030634 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-----TLWSLGNAHTSCGFLTADLSEAKGDFDKASEC 109 (174)
Q Consensus 35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~-----a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~ 109 (174)
+-.-|+-++..|.| ++|...|..||.+-|..+. .|.|.|.++.+++ .++.|++-
T Consensus 98 lK~EGN~~F~ngdy----------eeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~-----------k~e~aI~d 156 (271)
T KOG4234|consen 98 LKKEGNELFKNGDY----------EEANSKYQEALESCPSTSTEERSILYSNRAAALIKLR-----------KWESAIED 156 (271)
T ss_pred HHHHHHHhhhcccH----------HHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhh-----------hHHHHHHH
Confidence 33446667777777 9999999999999998664 4678999999988 99999999
Q ss_pred HHHHHHhCCCCH
Q 030634 110 FQRAVDEEPTNE 121 (174)
Q Consensus 110 ~~kAl~l~P~~~ 121 (174)
..|||+++|.+.
T Consensus 157 csKaiel~pty~ 168 (271)
T KOG4234|consen 157 CSKAIELNPTYE 168 (271)
T ss_pred HHhhHhcCchhH
Confidence 999999999765
No 188
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.46 E-value=0.0002 Score=37.66 Aligned_cols=33 Identities=39% Similarity=0.734 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
.+++.+|.++...| ++++|+.+|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~-----------~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLG-----------DYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHh-----------hHHHHHHHHHHHHccCCCC
Confidence 57899999999988 9999999999999999964
No 189
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.45 E-value=0.0013 Score=48.76 Aligned_cols=82 Identities=28% Similarity=0.272 Sum_probs=58.2
Q ss_pred hhHHHHHHHHHHHHhhCCCC----------H------------HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHH
Q 030634 12 LLSEHNRKTAEANYAKDPLD----------A------------DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL 69 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~----------~------------~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl 69 (174)
+..+.++..+++++.+-.++ . .++..++..+...|++ ++|+..+++++
T Consensus 20 ~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~----------~~a~~~~~~~l 89 (146)
T PF03704_consen 20 GDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDY----------EEALRLLQRAL 89 (146)
T ss_dssp T-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCH----------HHHHHHHHHHH
Confidence 35677777788888753111 1 1223334444555555 99999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634 70 VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (174)
Q Consensus 70 ~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl 114 (174)
.+||-+-.+|..+-.+|..+| +..+|+..|++..
T Consensus 90 ~~dP~~E~~~~~lm~~~~~~g-----------~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 90 ALDPYDEEAYRLLMRALAAQG-----------RRAEALRVYERYR 123 (146)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT------------HHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHCc-----------CHHHHHHHHHHHH
Confidence 999999999999999999999 8899998888764
No 190
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.45 E-value=0.00025 Score=39.17 Aligned_cols=33 Identities=33% Similarity=0.551 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
++++.+|.++...| ++++|+..|++.++..|++
T Consensus 1 ~a~~~~a~~~~~~g-----------~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLG-----------DYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHC-----------HHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHHCcCC
Confidence 47899999999988 9999999999999999985
No 191
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.44 E-value=0.0006 Score=47.67 Aligned_cols=52 Identities=23% Similarity=0.381 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
...+..++++++.+|+|+.+.+.++..+...| ++++|++.+-.+++.+|+..
T Consensus 5 ~~~~~al~~~~a~~P~D~~ar~~lA~~~~~~g-----------~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 5 APDIAALEAALAANPDDLDARYALADALLAAG-----------DYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp -HHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT------------HHHHHHHHHHHHCC-TTCC
T ss_pred cccHHHHHHHHHcCCCCHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHhCcccc
Confidence 35677899999999999999999999999999 99999999999999999874
No 192
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.41 E-value=0.0013 Score=57.09 Aligned_cols=82 Identities=23% Similarity=0.197 Sum_probs=72.4
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
+....-++.+++.++.+|++|..+..||..+...+.+ .+|-..|+.|++.-|+..+ +.-+|.++..+|
T Consensus 308 ~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w----------~kA~~~leaAl~~~~s~~~-~~~la~~~~~~g- 375 (400)
T COG3071 308 GDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLW----------GKASEALEAALKLRPSASD-YAELADALDQLG- 375 (400)
T ss_pred CCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHH----------HHHHHHHHHHHhcCCChhh-HHHHHHHHHHcC-
Confidence 3556677888999999999999999999999999988 9999999999999887655 577899999999
Q ss_pred CccchhhhhcCHHHHHHHHHHHHH
Q 030634 92 LTADLSEAKGDFDKASECFQRAVD 115 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~ 115 (174)
+..+|-+++++++.
T Consensus 376 ----------~~~~A~~~r~e~L~ 389 (400)
T COG3071 376 ----------EPEEAEQVRREALL 389 (400)
T ss_pred ----------ChHHHHHHHHHHHH
Confidence 99999999999874
No 193
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.0026 Score=53.61 Aligned_cols=102 Identities=15% Similarity=0.124 Sum_probs=81.4
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch---h------hhhhHH---HHHH------------H
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS---D------SKKIIN---EAIS------------K 64 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~---~------~~~~~~---eAi~------------~ 64 (174)
-..+.+.+|...+..++..+|.+.++...++.+++..|+.+... + ..+... ..++ .
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~ 224 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQD 224 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 34578999999999999999999999999999999999985311 1 111111 1233 3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 65 FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 65 lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+++.+.-||+|+++.+.|+..+...| ++++|++++-..++.|-+..
T Consensus 225 l~~~~aadPdd~~aa~~lA~~~~~~g-----------~~e~Ale~Ll~~l~~d~~~~ 270 (304)
T COG3118 225 LQRRLAADPDDVEAALALADQLHLVG-----------RNEAALEHLLALLRRDRGFE 270 (304)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhccccc
Confidence 44556779999999999999999999 99999999999999987655
No 194
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.38 E-value=0.001 Score=60.27 Aligned_cols=67 Identities=15% Similarity=0.209 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (174)
Q Consensus 34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA 113 (174)
+++.++..+...|++ ++|+...++||+..|..++.|+..|.+|-..| ++.+|.++++.|
T Consensus 196 ~~~~lAqhyd~~g~~----------~~Al~~Id~aI~htPt~~ely~~KarilKh~G-----------~~~~Aa~~~~~A 254 (517)
T PF12569_consen 196 TLYFLAQHYDYLGDY----------EKALEYIDKAIEHTPTLVELYMTKARILKHAG-----------DLKEAAEAMDEA 254 (517)
T ss_pred HHHHHHHHHHHhCCH----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCC-----------CHHHHHHHHHHH
Confidence 447778889888888 99999999999999999999999999999999 999999999999
Q ss_pred HHhCCCCH
Q 030634 114 VDEEPTNE 121 (174)
Q Consensus 114 l~l~P~~~ 121 (174)
-.+|+.+-
T Consensus 255 r~LD~~DR 262 (517)
T PF12569_consen 255 RELDLADR 262 (517)
T ss_pred HhCChhhH
Confidence 99999987
No 195
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.37 E-value=0.0051 Score=50.78 Aligned_cols=98 Identities=14% Similarity=0.121 Sum_probs=79.9
Q ss_pred hhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLWSLGN 84 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~---a~~~LG~ 84 (174)
-|.+++|.+.++.+....|.+ .++...++.++...+++ ++|+...++-+++.|.+++ ++|..|.
T Consensus 47 ~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y----------~~A~~~~drFi~lyP~~~n~dY~~YlkgL 116 (254)
T COG4105 47 KGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEY----------DLALAYIDRFIRLYPTHPNADYAYYLKGL 116 (254)
T ss_pred cCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccH----------HHHHHHHHHHHHhCCCCCChhHHHHHHHH
Confidence 468999999999999998875 67899999999999999 9999999999999999886 4677888
Q ss_pred HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
++...= +..........+|+.-|+..+..-|++.
T Consensus 117 s~~~~i---~~~~rDq~~~~~A~~~f~~~i~ryPnS~ 150 (254)
T COG4105 117 SYFFQI---DDVTRDQSAARAAFAAFKELVQRYPNSR 150 (254)
T ss_pred HHhccC---CccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence 865532 1222222346789999999999999987
No 196
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.36 E-value=0.0049 Score=51.35 Aligned_cols=92 Identities=16% Similarity=0.082 Sum_probs=73.6
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHh-cCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLEL-SQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~-g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
.|.+-.++|++.+.+|.+..+-..++|...|.+-... ++. +.|..+|+.+++..|++...|......+.
T Consensus 12 ~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~----------~~A~~Ife~glk~f~~~~~~~~~Y~~~l~ 81 (280)
T PF05843_consen 12 RRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDP----------KRARKIFERGLKKFPSDPDFWLEYLDFLI 81 (280)
T ss_dssp HHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-H----------HHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 4556689999999999976677889998888886664 333 56999999999999999999999889999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+| +.+.|...|++++..-|...
T Consensus 82 ~~~-----------d~~~aR~lfer~i~~l~~~~ 104 (280)
T PF05843_consen 82 KLN-----------DINNARALFERAISSLPKEK 104 (280)
T ss_dssp HTT------------HHHHHHHHHHHCCTSSCHH
T ss_pred HhC-----------cHHHHHHHHHHHHHhcCchh
Confidence 988 88899999999887766554
No 197
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.30 E-value=0.0047 Score=51.52 Aligned_cols=92 Identities=22% Similarity=0.123 Sum_probs=72.4
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~ 92 (174)
...+|.-.|++.-+..|..+..+...++|++.++++ ++|...++.||..+|++++++.|+-.+-..+|
T Consensus 188 k~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~----------eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~G-- 255 (299)
T KOG3081|consen 188 KIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRY----------EEAESLLEEALDKDAKDPETLANLIVLALHLG-- 255 (299)
T ss_pred hhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCH----------HHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC--
Confidence 466777788888887888888888888888888888 99999999999999999999999888888877
Q ss_pred ccchhhhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 030634 93 TADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124 (174)
Q Consensus 93 ~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~ 124 (174)
.+.+-...+..+.....|++++.+
T Consensus 256 --------kd~~~~~r~l~QLk~~~p~h~~vk 279 (299)
T KOG3081|consen 256 --------KDAEVTERNLSQLKLSHPEHPFVK 279 (299)
T ss_pred --------CChHHHHHHHHHHHhcCCcchHHH
Confidence 233444556666667788887443
No 198
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.29 E-value=0.0054 Score=55.01 Aligned_cols=125 Identities=21% Similarity=0.240 Sum_probs=84.0
Q ss_pred ChhhHHhhhhHHHHHHHHHHHHhhCC---C-----------C----HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHH
Q 030634 4 SQSDFDRLLLSEHNRKTAEANYAKDP---L-----------D----ADNLTRWGEALLELSQFESVSDSKKIINEAISKF 65 (174)
Q Consensus 4 ~~~~~~~~~~~~eAl~~~~~al~~~P---~-----------~----~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~l 65 (174)
+++.-+....|.+|++..+..+..+. . + .-+..++|.|..++|+. +|||+.+
T Consensus 213 A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~----------~EAIk~~ 282 (539)
T PF04184_consen 213 ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRL----------REAIKMF 282 (539)
T ss_pred ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCCh----------HHHHHHH
Confidence 44556777788888888888877642 1 1 33557788999999998 9999999
Q ss_pred HHHHHhCCC--CHHHHHHHHHHHHhCCCCccchhhhhcCHH------HHHHHHHHHHHh--------CCCCH--------
Q 030634 66 EEALVIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDFD------KASECFQRAVDE--------EPTNE-------- 121 (174)
Q Consensus 66 ekAl~ldP~--~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~------~Ai~~~~kAl~l--------~P~~~-------- 121 (174)
+..++.+|. +..++.+|-.++..+++ .++...-..+|+ .|--+|.+||-. .|+.+
T Consensus 283 rdLlke~p~~~~l~IrenLie~LLelq~-Yad~q~lL~kYdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~a 361 (539)
T PF04184_consen 283 RDLLKEFPNLDNLNIRENLIEALLELQA-YADVQALLAKYDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPA 361 (539)
T ss_pred HHHHhhCCccchhhHHHHHHHHHHhcCC-HHHHHHHHHHhccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChh
Confidence 999998886 45689999999999882 111111112222 255556665521 23221
Q ss_pred ------HHHHHHhcCCCChHHHHH
Q 030634 122 ------LYQKSLEVSTKAPELHME 139 (174)
Q Consensus 122 ------~y~~Al~l~~~~~~~~~~ 139 (174)
..++|.+.||..|.+...
T Consensus 362 e~~aveAi~RAvefNPHVp~YLLe 385 (539)
T PF04184_consen 362 EMNAVEAIHRAVEFNPHVPKYLLE 385 (539)
T ss_pred HHHHHHHHHHHHHhCCCCchhhhc
Confidence 577888888888876543
No 199
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.28 E-value=0.003 Score=58.57 Aligned_cols=128 Identities=16% Similarity=0.103 Sum_probs=66.1
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGNA 85 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l--dP~~~~a~~~LG~a 85 (174)
|-+.|++++|.+.+++..+ .|...|+.+...|...|+. ++|+..|++..+. .|+ ..++..+-.+
T Consensus 370 y~k~G~~~~A~~vf~~m~~---~d~~t~n~lI~~y~~~G~~----------~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a 435 (697)
T PLN03081 370 YSKWGRMEDARNVFDRMPR---KNLISWNALIAGYGNHGRG----------TKAVEMFERMIAEGVAPN-HVTFLAVLSA 435 (697)
T ss_pred HHHCCCHHHHHHHHHhCCC---CCeeeHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCCCC-HHHHHHHHHH
Confidence 4556667777777765532 2455667777777666666 5555555554432 222 2223333334
Q ss_pred HHhCCCC----------------cc---------chhhhhcCHHHHHHHHHHHHHhCCCCH-------------------
Q 030634 86 HTSCGFL----------------TA---------DLSEAKGDFDKASECFQRAVDEEPTNE------------------- 121 (174)
Q Consensus 86 ~~~lG~~----------------~~---------~~~~a~~~~~~Ai~~~~kAl~l~P~~~------------------- 121 (174)
+...|.. .| +..-..|++++|.+.+++. ...|+..
T Consensus 436 ~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~-~~~p~~~~~~~Ll~a~~~~g~~~~a~ 514 (697)
T PLN03081 436 CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA-PFKPTVNMWAALLTACRIHKNLELGR 514 (697)
T ss_pred HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCcHHHH
Confidence 4444400 00 0000011666666665543 2334332
Q ss_pred -HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 122 -LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 122 -~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
.+++.+++.|..+..|..|+++|...|+.
T Consensus 515 ~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~ 544 (697)
T PLN03081 515 LAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ 544 (697)
T ss_pred HHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence 33455567777777777777777777766
No 200
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.0012 Score=54.24 Aligned_cols=84 Identities=18% Similarity=0.197 Sum_probs=65.3
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---HH-HHHHhcCCC
Q 030634 57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---LY-QKSLEVSTK 132 (174)
Q Consensus 57 ~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---~y-~~Al~l~~~ 132 (174)
.+..||.+|-+||.++|..+..|.|.+.+|+++. +++.+..-.++|++++|+.. .+ -.++-....
T Consensus 25 ~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~-----------~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~ 93 (284)
T KOG4642|consen 25 RYDDAIDCYSRAICINPTVASYYTNRALCHLKLK-----------HWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKG 93 (284)
T ss_pred hhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhh-----------hhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhcc
Confidence 3499999999999999999999999999999988 99999999999999999877 22 233344455
Q ss_pred ChHHHHHHHHH--HHhccccC
Q 030634 133 APELHMELHKH--GINQQTLG 151 (174)
Q Consensus 133 ~~~~~~~l~~~--~~~~~~~~ 151 (174)
.+++-..|... +..++.+.
T Consensus 94 ~~eaI~~Lqra~sl~r~~~~~ 114 (284)
T KOG4642|consen 94 YDEAIKVLQRAYSLLREQPFT 114 (284)
T ss_pred ccHHHHHHHHHHHHHhcCCCC
Confidence 56666666655 44444443
No 201
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.25 E-value=0.0014 Score=60.77 Aligned_cols=86 Identities=14% Similarity=0.029 Sum_probs=69.2
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
|-+.|++++|.+.+++. ...| +...|..+..++...|++ +.|...+++.++++|++...|..|+++|.
T Consensus 472 l~r~G~~~eA~~~~~~~-~~~p-~~~~~~~Ll~a~~~~g~~----------~~a~~~~~~l~~~~p~~~~~y~~L~~~y~ 539 (697)
T PLN03081 472 LGREGLLDEAYAMIRRA-PFKP-TVNMWAALLTACRIHKNL----------ELGRLAAEKLYGMGPEKLNNYVVLLNLYN 539 (697)
T ss_pred HHhcCCHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHHcCCc----------HHHHHHHHHHhCCCCCCCcchHHHHHHHH
Confidence 45667788888777653 2223 455677777777777777 99999999999999999999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
..| ++++|.+.+++..+.
T Consensus 540 ~~G-----------~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 540 SSG-----------RQAEAAKVVETLKRK 557 (697)
T ss_pred hCC-----------CHHHHHHHHHHHHHc
Confidence 988 999999999887755
No 202
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.0017 Score=55.58 Aligned_cols=90 Identities=13% Similarity=0.105 Sum_probs=76.3
Q ss_pred hhhhHHHHHHHHHHHHhhCCC----CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634 10 RLLLSEHNRKTAEANYAKDPL----DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~----~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a 85 (174)
.-.+|..|...|.+.+...-. ++..|.|.+.|...+|+| ..||.-..+|++++|.+..+++.-+.|
T Consensus 93 K~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~Ny----------Rs~l~Dcs~al~~~P~h~Ka~~R~Akc 162 (390)
T KOG0551|consen 93 KEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNY----------RSALNDCSAALKLKPTHLKAYIRGAKC 162 (390)
T ss_pred HhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHH----------HHHHHHHHHHHhcCcchhhhhhhhhHH
Confidence 345899999999999997543 466789999999999999 999999999999999999999999999
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
+..+. ++++|..+.+..+.++-+.
T Consensus 163 ~~eLe-----------~~~~a~nw~ee~~~~d~e~ 186 (390)
T KOG0551|consen 163 LLELE-----------RFAEAVNWCEEGLQIDDEA 186 (390)
T ss_pred HHHHH-----------HHHHHHHHHhhhhhhhHHH
Confidence 99987 8777777777766665443
No 203
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.24 E-value=0.00054 Score=35.83 Aligned_cols=33 Identities=36% Similarity=0.694 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC
Q 030634 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75 (174)
Q Consensus 33 ~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~ 75 (174)
.++.++|.++..++++ ++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~----------~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDY----------DEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhH----------HHHHHHHHHHHccCCCC
Confidence 5789999999999999 99999999999999874
No 204
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=97.22 E-value=0.0033 Score=43.91 Aligned_cols=64 Identities=23% Similarity=0.223 Sum_probs=52.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHhCC
Q 030634 17 NRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK--HYTLWSLGNAHTSCG 90 (174)
Q Consensus 17 Al~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~--~~a~~~LG~a~~~lG 90 (174)
.+..+++.++.+|+|+++.+.+|..+...|++ ++|+..+-.+++.+|++ ..+.-.|=.++..+|
T Consensus 7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~----------e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg 72 (90)
T PF14561_consen 7 DIAALEAALAANPDDLDARYALADALLAAGDY----------EEALDQLLELVRRDRDYEDDAARKRLLDIFELLG 72 (90)
T ss_dssp HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-
T ss_pred cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHhCccccccHHHHHHHHHHHHcC
Confidence 45678889999999999999999999999999 99999999999999886 566666666677766
No 205
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.21 E-value=0.0058 Score=53.18 Aligned_cols=91 Identities=18% Similarity=0.089 Sum_probs=73.5
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
.+.+++..++|.+..+.+++..-+.. ....++.+ ..++. ..=++..++.++..|+++..+..||..+
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~~~D~~-L~~~~~~l--~~~d~----------~~l~k~~e~~l~~h~~~p~L~~tLG~L~ 338 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKRQWDPR-LCRLIPRL--RPGDP----------EPLIKAAEKWLKQHPEDPLLLSTLGRLA 338 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHhccChh-HHHHHhhc--CCCCc----------hHHHHHHHHHHHhCCCChhHHHHHHHHH
Confidence 46788899999999999998765544 22222222 23334 7888899999999999999999999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+.+ .+.+|..+|+.|++..|+..
T Consensus 339 ~k~~-----------~w~kA~~~leaAl~~~~s~~ 362 (400)
T COG3071 339 LKNK-----------LWGKASEALEAALKLRPSAS 362 (400)
T ss_pred HHhh-----------HHHHHHHHHHHHHhcCCChh
Confidence 9987 99999999999999999755
No 206
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.21 E-value=0.00077 Score=37.11 Aligned_cols=33 Identities=27% Similarity=0.456 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC
Q 030634 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75 (174)
Q Consensus 33 ~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~ 75 (174)
++++++|.++...|++ ++|+..|+++++..|++
T Consensus 1 ~a~~~~a~~~~~~g~~----------~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDY----------DEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHH----------HHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCH----------HHHHHHHHHHHHHCcCC
Confidence 5789999999999999 99999999999999985
No 207
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.19 E-value=0.0053 Score=54.27 Aligned_cols=110 Identities=21% Similarity=0.201 Sum_probs=73.1
Q ss_pred hhhHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCC------CCHHH
Q 030634 11 LLLSEHNRKTAEANYAKD------PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP------AKHYT 78 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~------P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP------~~~~a 78 (174)
+|.|+-|++.|.+++.+. .-.++..|.||+.|..+.++ ++||..+.+=|.|.- ....+
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~----------~kAI~Yh~rHLaIAqeL~DriGe~Ra 317 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEV----------QKAITYHQRHLAIAQELEDRIGELRA 317 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHH----------HHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence 456677777766655531 22455667777777776666 778777776655522 24456
Q ss_pred HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCC--hHHHHHHHHHHHhcccc
Q 030634 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKA--PELHMELHKHGINQQTL 150 (174)
Q Consensus 79 ~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~--~~~~~~l~~~~~~~~~~ 150 (174)
+|.||+++..+| ..++|+.+..+.+ +.+++++..+ ..+..||.+.-...|..
T Consensus 318 cwSLgna~~alg-----------~h~kAl~fae~hl---------~~s~ev~D~sgelTar~Nlsdl~~~lG~~ 371 (639)
T KOG1130|consen 318 CWSLGNAFNALG-----------EHRKALYFAELHL---------RSSLEVNDTSGELTARDNLSDLILELGQE 371 (639)
T ss_pred HHHHHHHHHhhh-----------hHHHHHHHHHHHH---------HHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence 777888887777 7788887777744 4466777665 44788888887777766
No 208
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.17 E-value=0.011 Score=47.28 Aligned_cols=107 Identities=17% Similarity=0.179 Sum_probs=97.7
Q ss_pred HhhhhHHHHHHHHHHHHh-hCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 030634 9 DRLLLSEHNRKTAEANYA-KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGNA 85 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~-~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~--~~~a~~~LG~a 85 (174)
..+|++.||...|++++. +...|+..+..++.+++.++++ .+|...+++..+-+|. .++.+..+|.+
T Consensus 100 ~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~----------A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~ 169 (251)
T COG4700 100 AELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEF----------AAAQQTLEDLMEYNPAFRSPDGHLLFART 169 (251)
T ss_pred HHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccH----------HHHHHHHHHHhhcCCccCCCCchHHHHHH
Confidence 468999999999999988 7889999999999999999999 9999999999999887 56778899999
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
|..+| .+.+|...|+.++.--|+ ++.....+.-+..|||+
T Consensus 170 laa~g-----------~~a~Aesafe~a~~~ypg--------------~~ar~~Y~e~La~qgr~ 209 (251)
T COG4700 170 LAAQG-----------KYADAESAFEVAISYYPG--------------PQARIYYAEMLAKQGRL 209 (251)
T ss_pred HHhcC-----------CchhHHHHHHHHHHhCCC--------------HHHHHHHHHHHHHhcch
Confidence 99999 999999999998888884 78888888999999988
No 209
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=97.10 E-value=0.011 Score=44.71 Aligned_cols=75 Identities=19% Similarity=0.292 Sum_probs=61.9
Q ss_pred CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH-hCCCCH-HHHHHHHHHHHhCCCCccchhhhhcCHHHH
Q 030634 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-IDPAKH-YTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (174)
Q Consensus 29 P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~-ldP~~~-~a~~~LG~a~~~lG~~~~~~~~a~~~~~~A 106 (174)
.-..+..++++.++....+ +..+++.|.+++..++ -.|..- +..|.|+..++++| +|++|
T Consensus 29 ~~s~~s~f~lAwaLV~S~~-------~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlk-----------eY~~s 90 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRD-------TEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLK-----------EYSKS 90 (149)
T ss_pred cchHHHHHHHHHHHHcccc-------hHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHh-----------hHHHH
Confidence 4456788888888877544 3455999999999997 455443 57889999999988 99999
Q ss_pred HHHHHHHHHhCCCCH
Q 030634 107 SECFQRAVDEEPTNE 121 (174)
Q Consensus 107 i~~~~kAl~l~P~~~ 121 (174)
+.+.+..|+.+|+|.
T Consensus 91 ~~yvd~ll~~e~~n~ 105 (149)
T KOG3364|consen 91 LRYVDALLETEPNNR 105 (149)
T ss_pred HHHHHHHHhhCCCcH
Confidence 999999999999998
No 210
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.07 E-value=0.0016 Score=54.09 Aligned_cols=49 Identities=31% Similarity=0.429 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHHHHh--CCCC----HHHHHHHHHHHHhC-CCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 57 IINEAISKFEEALVI--DPAK----HYTLWSLGNAHTSC-GFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 57 ~~~eAi~~lekAl~l--dP~~----~~a~~~LG~a~~~l-G~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
.+++|+.+|++|+.+ .-.+ ..++..+|.+|... | ++++|+++|++|+++
T Consensus 89 ~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~-----------d~e~Ai~~Y~~A~~~ 144 (282)
T PF14938_consen 89 DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLG-----------DYEKAIEYYQKAAEL 144 (282)
T ss_dssp THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT-------------HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHH
Confidence 348999999999987 2222 34678888888887 7 999999999999987
No 211
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.04 E-value=0.0049 Score=51.20 Aligned_cols=93 Identities=17% Similarity=0.150 Sum_probs=71.3
Q ss_pred HHhh-hhHHHHHHHHHHHHhhC--CCC----HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC----CH
Q 030634 8 FDRL-LLSEHNRKTAEANYAKD--PLD----ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KH 76 (174)
Q Consensus 8 ~~~~-~~~~eAl~~~~~al~~~--P~~----~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~----~~ 76 (174)
|+.. +.+++|++.|++|++.. .+. ..++.++|.++..+|++ ++|+..|+++....-+ ..
T Consensus 124 ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y----------~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 124 YEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY----------EEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHhhcccccch
Confidence 5566 89999999999999962 122 45778899999999998 9999999999875322 12
Q ss_pred ---HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 77 ---YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 77 ---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
..++..+.|+...| ++-.|...+++....+|...
T Consensus 194 ~~~~~~l~a~l~~L~~~-----------D~v~A~~~~~~~~~~~~~F~ 230 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMG-----------DYVAARKALERYCSQDPSFA 230 (282)
T ss_dssp HHHHHHHHHHHHHHHTT------------HHHHHHHHHHHGTTSTTST
T ss_pred hHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHhhCCCCC
Confidence 34567888999988 99999999999999999765
No 212
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=97.03 E-value=0.01 Score=53.34 Aligned_cols=86 Identities=10% Similarity=-0.005 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccc
Q 030634 16 HNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTAD 95 (174)
Q Consensus 16 eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~ 95 (174)
.-...|+.|....+.|+..|..+..-..+.+.+ .+--.+|.+++...|++++.|..-+.=.+..+
T Consensus 89 rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~----------~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n----- 153 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTY----------GEVKKIFAAMLAKHPNNPDLWIYAAKWEFEIN----- 153 (568)
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcch----------hHHHHHHHHHHHhCCCCchhHHhhhhhHHhhc-----
Confidence 345678999999999999999998777776666 88889999999999999999998877766665
Q ss_pred hhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 96 LSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 96 ~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
-+.+.|...|.++|+.+|+++
T Consensus 154 -----~ni~saRalflrgLR~npdsp 174 (568)
T KOG2396|consen 154 -----LNIESARALFLRGLRFNPDSP 174 (568)
T ss_pred -----cchHHHHHHHHHHhhcCCCCh
Confidence 249999999999999999999
No 213
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=97.02 E-value=0.0093 Score=53.53 Aligned_cols=92 Identities=17% Similarity=0.196 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC--------------C---
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--------------K--- 75 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~--------------~--- 75 (174)
...+-++.+.+|++++|+.+++|..|+.--.. .+.++...+.+|++.-+..+..+.. +
T Consensus 183 np~aRIkaA~eALei~pdCAdAYILLAEEeA~-----Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~ 257 (539)
T PF04184_consen 183 NPQARIKAAKEALEINPDCADAYILLAEEEAS-----TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNV 257 (539)
T ss_pred CHHHHHHHHHHHHHhhhhhhHHHhhccccccc-----CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccch
Confidence 56677899999999999999999888763211 1112222234444444444433220 1
Q ss_pred -HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 76 -HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 76 -~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
..+...||+|..++| +.++|++.++..++.+|..
T Consensus 258 ~~y~KrRLAmCarklG-----------r~~EAIk~~rdLlke~p~~ 292 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLG-----------RLREAIKMFRDLLKEFPNL 292 (539)
T ss_pred hhhhHHHHHHHHHHhC-----------ChHHHHHHHHHHHhhCCcc
Confidence 224467899999988 9999999999999998864
No 214
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.94 E-value=0.065 Score=52.56 Aligned_cols=85 Identities=9% Similarity=0.019 Sum_probs=43.8
Q ss_pred HhhhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPL-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWSLGNA 85 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~-~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l--dP~~~~a~~~LG~a 85 (174)
-+.|.+++|++.+.+..+.... |...|..+-..|...|++ ++|+..|++..+. .|+ ...|..+-.+
T Consensus 483 ~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~----------eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a 551 (1060)
T PLN03218 483 AKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV----------AKAFGAYGIMRSKNVKPD-RVVFNALISA 551 (1060)
T ss_pred HhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHHcCCCCC-HHHHHHHHHH
Confidence 3445555566655555554322 455555555555555555 5555555554432 222 3444555555
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~ 115 (174)
|...| ++++|.+.|++..+
T Consensus 552 ~~k~G-----------~~deA~~lf~eM~~ 570 (1060)
T PLN03218 552 CGQSG-----------AVDRAFDVLAEMKA 570 (1060)
T ss_pred HHHCC-----------CHHHHHHHHHHHHH
Confidence 55555 55555555555543
No 215
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.91 E-value=0.0048 Score=39.00 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHH
Q 030634 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQ 124 (174)
Q Consensus 77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~ 124 (174)
+.+|.++..++++| +|++|..+.+++|+++|+|....
T Consensus 2 d~lY~lAig~ykl~-----------~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 2 DCLYYLAIGHYKLG-----------EYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHHHHHTT------------HHHHHHHHHHHHHHTTS-HHHH
T ss_pred hhHHHHHHHHHHhh-----------hHHHHHHHHHHHHhhCCCcHHHH
Confidence 46789999999999 99999999999999999998443
No 216
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.89 E-value=0.022 Score=49.63 Aligned_cols=102 Identities=15% Similarity=0.083 Sum_probs=73.8
Q ss_pred hhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---hcCcccchhhhhhHHHHHHHHHH-HHHhCCCCHHHHHH
Q 030634 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLE---LSQFESVSDSKKIINEAISKFEE-ALVIDPAKHYTLWS 81 (174)
Q Consensus 6 ~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~---~g~~~~~~~~~~~~~eAi~~lek-Al~ldP~~~~a~~~ 81 (174)
.|||.|...-++++..-.- .-++.+.+.+.+|.++.. .|+. ++|+..+.. .....+.+++.+-.
T Consensus 155 qdydamI~Lve~l~~~p~~--~~~~~~~i~~~yafALnRrn~~gdr----------e~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 155 QDYDAMIKLVETLEALPTC--DVANQHNIKFQYAFALNRRNKPGDR----------EKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred hhHHHHHHHHHHhhccCcc--chhcchHHHHHHHHHHhhcccCCCH----------HHHHHHHHHHHhccCCCChHHHHH
Confidence 4677776666665543110 035678888999999988 5555 999999999 55778889999999
Q ss_pred HHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 82 LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+|.+|-.+= ..........+++|+.+|+++.+++|+.-
T Consensus 223 ~GRIyKD~~--~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 223 LGRIYKDLF--LESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHHHHH--HHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 999996532 11111223458999999999999998754
No 217
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.85 E-value=0.014 Score=48.25 Aligned_cols=70 Identities=26% Similarity=0.260 Sum_probs=64.7
Q ss_pred CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCccchhhhhcCHHHHH
Q 030634 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (174)
Q Consensus 31 ~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai 107 (174)
.+.-|++-|...+..|++ ++|+..|+++....|..+ .+...++.++++-| +|++|+
T Consensus 33 p~~~LY~~g~~~L~~gn~----------~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~-----------~y~~A~ 91 (254)
T COG4105 33 PASELYNEGLTELQKGNY----------EEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG-----------EYDLAL 91 (254)
T ss_pred CHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc-----------cHHHHH
Confidence 577899999999999999 999999999999988876 57889999999988 999999
Q ss_pred HHHHHHHHhCCCCH
Q 030634 108 ECFQRAVDEEPTNE 121 (174)
Q Consensus 108 ~~~~kAl~l~P~~~ 121 (174)
...++=+++.|+++
T Consensus 92 ~~~drFi~lyP~~~ 105 (254)
T COG4105 92 AYIDRFIRLYPTHP 105 (254)
T ss_pred HHHHHHHHhCCCCC
Confidence 99999999999988
No 218
>PLN03077 Protein ECB2; Provisional
Probab=96.84 E-value=0.0095 Score=56.54 Aligned_cols=53 Identities=13% Similarity=0.157 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHH----hCCCCH
Q 030634 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD----EEPTNE 121 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~----l~P~~~ 121 (174)
.+.+....+++++++|+++..|..|+++|...| ++++|.+..+..-+ .+|+..
T Consensus 673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g-----------~~~~a~~vr~~M~~~g~~k~~g~s 729 (857)
T PLN03077 673 VELGELAAQHIFELDPNSVGYYILLCNLYADAG-----------KWDEVARVRKTMRENGLTVDPGCS 729 (857)
T ss_pred hHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCC-----------ChHHHHHHHHHHHHcCCCCCCCcc
Confidence 378888899999999999999999999999999 99999998877654 456544
No 219
>PLN03218 maturation of RBCL 1; Provisional
Probab=96.83 E-value=0.046 Score=53.61 Aligned_cols=51 Identities=14% Similarity=0.149 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh--CCCC
Q 030634 59 NEAISKFEEALVID-PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE--EPTN 120 (174)
Q Consensus 59 ~eAi~~lekAl~ld-P~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l--~P~~ 120 (174)
++|++.|++..+.+ +.+...|..+..+|.+.| ++++|+..|++..+. .|+.
T Consensus 596 deA~elf~~M~e~gi~p~~~tynsLI~ay~k~G-----------~~deAl~lf~eM~~~Gv~PD~ 649 (1060)
T PLN03218 596 DRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG-----------DWDFALSIYDDMKKKGVKPDE 649 (1060)
T ss_pred HHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCH
Confidence 66666666665554 334555556666666655 666666666666654 4553
No 220
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.81 E-value=0.0021 Score=36.95 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh--CCCC
Q 030634 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAK 75 (174)
Q Consensus 34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l--dP~~ 75 (174)
+|.++|.++..+|++ ++|+++|+++|.+ +|.+
T Consensus 1 al~~Lg~~~~~~g~~----------~~Ai~~y~~aL~l~~~~~~ 34 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDY----------EKAIEYYEQALALARDPED 34 (36)
T ss_dssp HHHHHHHHHHHCT-H----------HHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHcCCH----------HHHHHHHHHHHHhcccccC
Confidence 578999999999999 9999999996644 5543
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.81 E-value=0.0087 Score=53.52 Aligned_cols=89 Identities=24% Similarity=0.233 Sum_probs=76.9
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KHYTLWSLGNAHT 87 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~----~~~a~~~LG~a~~ 87 (174)
...+.|.+.........|+.+-.++..|+++...|+. ++|+..|++++..... ..-.++.+|.++.
T Consensus 247 ~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~----------~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~ 316 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNL----------EEAIESFERAIESQSEWKQLHHLCYFELAWCHM 316 (468)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCH----------HHHHHHHHHhccchhhHHhHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999998 9999999999854333 3346789999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.++ +|++|.++|.+.++.+.-+.
T Consensus 317 ~~~-----------~w~~A~~~f~~L~~~s~WSk 339 (468)
T PF10300_consen 317 FQH-----------DWEEAAEYFLRLLKESKWSK 339 (468)
T ss_pred HHc-----------hHHHHHHHHHHHHhccccHH
Confidence 988 99999999999999876554
No 222
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=96.79 E-value=0.015 Score=42.29 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=77.2
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCH---HHHHHHHHHHHHhcCcccchhh-hhhHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDA---DNLTRWGEALLELSQFESVSDS-KKIINEAISKFEEALVIDPAKHYTLWSL 82 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~---~a~~~lg~~l~~~g~~~~~~~~-~~~~~eAi~~lekAl~ldP~~~~a~~~L 82 (174)
++=+.|.+-+|++..+..+..++++. ..+..-|.++..++.--+..+. ..-...++++|.++..+.|..+..++.|
T Consensus 5 ~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L~~l 84 (111)
T PF04781_consen 5 DYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSLFEL 84 (111)
T ss_pred HHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHHHHH
Confidence 45577889999999999999999987 4556668888776654222222 2345789999999999999999999999
Q ss_pred HHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 83 GNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 83 G~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
|.=+-.-- .|++++.-.+++|.+
T Consensus 85 a~~l~s~~-----------~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 85 ASQLGSVK-----------YYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHhhhHH-----------HHHHHHHHHHHHhcc
Confidence 88765533 789999988888865
No 223
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.79 E-value=0.0042 Score=53.12 Aligned_cols=52 Identities=25% Similarity=0.494 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
++|...|+.|++++|++++++..+|.....-. +.-+|-.||-+||.++|.|.
T Consensus 133 ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~-----------~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 133 EKAMTLFEHALALAPTNPQILIEMGQFREMHN-----------EIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhh-----------hhHhhhhhhheeeeeCCCch
Confidence 99999999999999999999999999987766 89999999999999999998
No 224
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.013 Score=53.55 Aligned_cols=83 Identities=22% Similarity=0.281 Sum_probs=60.9
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh------------------
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI------------------ 71 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l------------------ 71 (174)
|++..++|++.+. -.++.+..++...|.+++.+|+| ++|+.+|+..++-
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~y----------dealdiY~~L~kn~~dd~d~~~r~nl~a~~a 157 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERY----------DEALDIYQHLAKNNSDDQDEERRANLLAVAA 157 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhH----------HHHHHHHHHHHhcCCchHHHHHHHHHHHHHH
Confidence 6777888888877 56777788888889888888888 5555555555333
Q ss_pred ------------CCC-CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 72 ------------DPA-KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 72 ------------dP~-~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
.|. +.+.+||.+.++...| +|.+|++.+++|+++
T Consensus 158 ~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~g-----------ky~qA~elL~kA~~~ 204 (652)
T KOG2376|consen 158 ALQVQLLQSVPEVPEDSYELLYNTACILIENG-----------KYNQAIELLEKALRI 204 (652)
T ss_pred hhhHHHHHhccCCCcchHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHHHH
Confidence 333 4456778888888877 999999999998543
No 225
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.78 E-value=0.014 Score=48.99 Aligned_cols=100 Identities=13% Similarity=0.134 Sum_probs=82.3
Q ss_pred hhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCcccch---h---------------------------hhhhHH
Q 030634 11 LLLSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQFESVS---D---------------------------SKKIIN 59 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~-P~~~~a~~~lg~~l~~~g~~~~~~---~---------------------------~~~~~~ 59 (174)
++.|-=.+..+.+.++.+ |.+|.....+|.+-++.|+.+... + -.+.+-
T Consensus 190 ~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a 269 (366)
T KOG2796|consen 190 MKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFA 269 (366)
T ss_pred chhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchH
Confidence 345666778888999988 779999999999999988864211 0 023467
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 60 EAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 60 eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+|...|.+++..||.++.+-.+-+.|+..+| +..+|++-...++++.|...
T Consensus 270 ~a~r~~~~i~~~D~~~~~a~NnKALcllYlg-----------~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 270 EAHRFFTEILRMDPRNAVANNNKALCLLYLG-----------KLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHHHHhhccccCCCchhhhchHHHHHHHHH-----------HHHHHHHHHHHHhccCCccc
Confidence 8888899999999999999999999999988 99999999999999999876
No 226
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.78 E-value=0.034 Score=46.45 Aligned_cols=111 Identities=19% Similarity=0.216 Sum_probs=83.0
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
+-++-+++-|.+..++..+++- -.++..||.++..+--- .+.+.+|.-+|++--+.-|-.+......+.|+.
T Consensus 147 ~lk~~r~d~A~~~lk~mq~ide--d~tLtQLA~awv~la~g------gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l 218 (299)
T KOG3081|consen 147 LLKMHRFDLAEKELKKMQQIDE--DATLTQLAQAWVKLATG------GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHL 218 (299)
T ss_pred HHHHHHHHHHHHHHHHHHccch--HHHHHHHHHHHHHHhcc------chhhhhHHHHHHHHhcccCCChHHHccHHHHHH
Confidence 3466777778777777766554 44566677766654221 233599999999999988889999999999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
.+| +|++|...++.||..+|++ |++..|+.++-.-+|..
T Consensus 219 ~~~-----------~~eeAe~lL~eaL~kd~~d-------------petL~Nliv~a~~~Gkd 257 (299)
T KOG3081|consen 219 QLG-----------RYEEAESLLEEALDKDAKD-------------PETLANLIVLALHLGKD 257 (299)
T ss_pred Hhc-----------CHHHHHHHHHHHHhccCCC-------------HHHHHHHHHHHHHhCCC
Confidence 998 9999999888877766654 77777777777666654
No 227
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=96.73 E-value=0.0033 Score=53.74 Aligned_cols=69 Identities=19% Similarity=0.095 Sum_probs=60.4
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a 85 (174)
+-.+.|..++|.++++.|+.++|.+++++...|.....-++. -+|=.+|-+||.++|.+.+|+.|....
T Consensus 125 ~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~i----------v~ADq~Y~~ALtisP~nseALvnR~RT 193 (472)
T KOG3824|consen 125 RSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEI----------VEADQCYVKALTISPGNSEALVNRART 193 (472)
T ss_pred HHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhh----------HhhhhhhheeeeeCCCchHHHhhhhcc
Confidence 345778999999999999999999999999999887665554 899999999999999999999887654
No 228
>PRK10941 hypothetical protein; Provisional
Probab=96.71 E-value=0.015 Score=48.55 Aligned_cols=66 Identities=23% Similarity=0.214 Sum_probs=58.5
Q ss_pred HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (174)
Q Consensus 35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl 114 (174)
+.++=.++...+++ +.|+.+.+..+.++|+++.-+-..|.+|..+| .+..|..-++.-+
T Consensus 184 l~nLK~~~~~~~~~----------~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~-----------c~~~A~~DL~~fl 242 (269)
T PRK10941 184 LDTLKAALMEEKQM----------ELALRASEALLQFDPEDPYEIRDRGLIYAQLD-----------CEHVALSDLSYFV 242 (269)
T ss_pred HHHHHHHHHHcCcH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHH
Confidence 34555566677777 99999999999999999999999999999999 9999999999988
Q ss_pred HhCCCCH
Q 030634 115 DEEPTNE 121 (174)
Q Consensus 115 ~l~P~~~ 121 (174)
+.-|+++
T Consensus 243 ~~~P~dp 249 (269)
T PRK10941 243 EQCPEDP 249 (269)
T ss_pred HhCCCch
Confidence 8888887
No 229
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.69 E-value=0.0088 Score=37.78 Aligned_cols=42 Identities=17% Similarity=0.124 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 33 ~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
+.++.+|..+..+|++ ++|....+.+|+++|+|..+.-....
T Consensus 2 d~lY~lAig~ykl~~Y----------~~A~~~~~~lL~~eP~N~Qa~~L~~~ 43 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEY----------EKARRYCDALLEIEPDNRQAQSLKEL 43 (53)
T ss_dssp HHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhH----------HHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence 5788999999999999 99999999999999999997654433
No 230
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=96.66 E-value=0.0042 Score=55.20 Aligned_cols=81 Identities=16% Similarity=0.210 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH--------------H-
Q 030634 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------L- 122 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------~- 122 (174)
++.|+..|.|||+++|+++..+-+.+.++.+.+ +|..|+.-+.+|++++|... +
T Consensus 20 fd~avdlysKaI~ldpnca~~~anRa~a~lK~e-----------~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~ 88 (476)
T KOG0376|consen 20 FDVAVDLYSKAIELDPNCAIYFANRALAHLKVE-----------SFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF 88 (476)
T ss_pred HHHHHHHHHHHHhcCCcceeeechhhhhheeec-----------hhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence 499999999999999999999999999999988 99999999999999999987 3
Q ss_pred ------HHHHHhcCCCChHHHHHHHHHHHhccc
Q 030634 123 ------YQKSLEVSTKAPELHMELHKHGINQQT 149 (174)
Q Consensus 123 ------y~~Al~l~~~~~~~~~~l~~~~~~~~~ 149 (174)
+++...+.|..+.+.-.+..+-....+
T Consensus 89 ~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~ 121 (476)
T KOG0376|consen 89 KKALLDLEKVKKLAPNDPDATRKIDECNKIVSE 121 (476)
T ss_pred HHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHH
Confidence 344447889999888777776655544
No 231
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.58 E-value=0.064 Score=45.89 Aligned_cols=71 Identities=13% Similarity=0.085 Sum_probs=62.7
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
+-.+|+.|++...--.+.+|.+-..+..+|.||....+| .+|..||++.-.+.|+.....+.-+..++..
T Consensus 22 ~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f----------~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A 91 (459)
T KOG4340|consen 22 RDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEF----------ALAAECYEQLGQLHPELEQYRLYQAQSLYKA 91 (459)
T ss_pred HHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhhChHHHHHHHHHHHHHHHh
Confidence 335899999999999999999999999999999999998 9999999999999999888776666666665
Q ss_pred C
Q 030634 90 G 90 (174)
Q Consensus 90 G 90 (174)
+
T Consensus 92 ~ 92 (459)
T KOG4340|consen 92 C 92 (459)
T ss_pred c
Confidence 5
No 232
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.52 E-value=0.036 Score=48.38 Aligned_cols=109 Identities=17% Similarity=0.170 Sum_probs=74.0
Q ss_pred hhhHHHHHHHHHH-HHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 11 LLLSEHNRKTAEA-NYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 11 ~~~~~eAl~~~~~-al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
.|..++|+..... .....+.+++.+..+|.+|-.+-.-.+ .......++||..|+++.+++|+.... .|++.++...
T Consensus 195 ~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~-~~d~~~ldkAi~~Y~kgFe~~~~~Y~G-IN~AtLL~~~ 272 (374)
T PF13281_consen 195 PGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESN-FTDRESLDKAIEWYRKGFEIEPDYYSG-INAATLLMLA 272 (374)
T ss_pred CCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcC-ccchHHHHHHHHHHHHHHcCCccccch-HHHHHHHHHc
Confidence 6778999999999 555678899999999999976522111 112334799999999999999764332 4555555555
Q ss_pred CC------------------------Cc-----------cchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 90 GF------------------------LT-----------ADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 90 G~------------------------~~-----------~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
|. +. .+.....+++++|+++++++++++|...
T Consensus 273 g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 273 GHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred CCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 51 10 1112236677888887777777766544
No 233
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.021 Score=47.46 Aligned_cols=69 Identities=22% Similarity=0.320 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH--------hCCCCHH----------HHHHHHHHHHhCCCCc
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV--------IDPAKHY----------TLWSLGNAHTSCGFLT 93 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~--------ldP~~~~----------a~~~LG~a~~~lG~~~ 93 (174)
..++...|+-++..|++ ++|..+|+.|+- -.|.+++ .+.|.+.|+...|
T Consensus 178 v~~l~q~GN~lfk~~~y----------kEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~--- 244 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRY----------KEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKE--- 244 (329)
T ss_pred hHHHHHhhhhhhhhccH----------HHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHH---
Confidence 34667778888888888 777777766643 3566555 4578888888877
Q ss_pred cchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 94 ADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 94 ~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+|-+++++....|..+|+|.
T Consensus 245 --------e~yevleh~seiL~~~~~nv 264 (329)
T KOG0545|consen 245 --------EYYEVLEHCSEILRHHPGNV 264 (329)
T ss_pred --------HHHHHHHHHHHHHhcCCchH
Confidence 99999999999999999998
No 234
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.48 E-value=0.02 Score=48.97 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=62.9
Q ss_pred HHHHhhCC--CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhh
Q 030634 22 EANYAKDP--LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEA 99 (174)
Q Consensus 22 ~~al~~~P--~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a 99 (174)
+-.++.-| ++++...+.|.++.+-|++ ++|++.|+.|++..--++..-|+++.+++..|
T Consensus 132 rsLveQlp~en~Ad~~in~gCllykegqy----------EaAvqkFqaAlqvsGyqpllAYniALaHy~~~--------- 192 (459)
T KOG4340|consen 132 RSLVEQLPSENEADGQINLGCLLYKEGQY----------EAAVQKFQAALQVSGYQPLLAYNLALAHYSSR--------- 192 (459)
T ss_pred HHHHHhccCCCccchhccchheeeccccH----------HHHHHHHHHHHhhcCCCchhHHHHHHHHHhhh---------
Confidence 34445556 5788888888888888888 99999999999999999999999999999988
Q ss_pred hcCHHHHHHHHHHHHHh
Q 030634 100 KGDFDKASECFQRAVDE 116 (174)
Q Consensus 100 ~~~~~~Ai~~~~kAl~l 116 (174)
+++.|+++....++.
T Consensus 193 --qyasALk~iSEIieR 207 (459)
T KOG4340|consen 193 --QYASALKHISEIIER 207 (459)
T ss_pred --hHHHHHHHHHHHHHh
Confidence 999999887776654
No 235
>PRK10941 hypothetical protein; Provisional
Probab=96.46 E-value=0.017 Score=48.14 Aligned_cols=69 Identities=16% Similarity=0.055 Sum_probs=62.4
Q ss_pred hhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 6 ~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
+-|-+.++++.|++..+..+.++|+++.-+--.|.++.++|.+ ..|+.-++.-++.-|+++.+-...-.
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~----------~~A~~DL~~fl~~~P~dp~a~~ik~q 257 (269)
T PRK10941 189 AALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCE----------HVALSDLSYFVEQCPEDPISEMIRAQ 257 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHhCCCchhHHHHHHH
Confidence 3467788999999999999999999999999999999999999 99999999999999999998654433
No 236
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.39 E-value=0.0051 Score=50.49 Aligned_cols=52 Identities=21% Similarity=0.475 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+-|.+.|.+++++-|+....|+.+|....+.| +++.|...|++.+++||++.
T Consensus 12 ~aaaely~qal~lap~w~~gwfR~g~~~ekag-----------~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 12 EAAAELYNQALELAPEWAAGWFRLGEYTEKAG-----------EFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred HHHHHHHHHHhhcCchhhhhhhhcchhhhhcc-----------cHHHHHHHHHHHHcCCcccc
Confidence 88999999999999999999999999999999 99999999999999999887
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.38 E-value=0.018 Score=42.61 Aligned_cols=53 Identities=19% Similarity=0.093 Sum_probs=45.0
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV 70 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ 70 (174)
+...+.+++|+..+++++..+|.+..++..+-.++...|+. .+|+..|++..+
T Consensus 72 ~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~----------~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 72 LLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRR----------AEALRVYERYRR 124 (146)
T ss_dssp HHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred HHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCH----------HHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999 888888887644
No 238
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=96.37 E-value=0.021 Score=49.79 Aligned_cols=91 Identities=23% Similarity=0.183 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhCCCCccchhhhhcCHHHH
Q 030634 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY------TLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (174)
Q Consensus 33 ~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~------a~~~LG~a~~~lG~~~~~~~~a~~~~~~A 106 (174)
.....+|+++..++.| +++++.|++|+++.-++.+ ++..||..+..+. ++++|
T Consensus 123 q~~l~~~~Ahlgls~f----------q~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~-----------D~~Ka 181 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVF----------QKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLK-----------DYEKA 181 (518)
T ss_pred hhhhhHHHHhhhHHHH----------HHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHH-----------hhhHH
Confidence 3455566666666666 8888888888887444333 4667888888876 88888
Q ss_pred HHHHHHHHHhCCCCH------HHHHHHhcCCCChHHHHHHHHHHHhccccCCC
Q 030634 107 SECFQRAVDEEPTNE------LYQKSLEVSTKAPELHMELHKHGINQQTLGGG 153 (174)
Q Consensus 107 i~~~~kAl~l~P~~~------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~~~~ 153 (174)
+.+..+|.++--+.. .|+.+ ..+.|++.+..+|++|.+
T Consensus 182 l~f~~kA~~lv~s~~l~d~~~kyr~~---------~lyhmaValR~~G~LgdA 225 (518)
T KOG1941|consen 182 LFFPCKAAELVNSYGLKDWSLKYRAM---------SLYHMAVALRLLGRLGDA 225 (518)
T ss_pred hhhhHhHHHHHHhcCcCchhHHHHHH---------HHHHHHHHHHHhcccccH
Confidence 888888887754332 33332 346788888888888654
No 239
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.33 E-value=0.011 Score=33.86 Aligned_cols=30 Identities=27% Similarity=0.359 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 76 ~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
..++.+||.+|..+| ++++|+.++++++++
T Consensus 2 a~~~~~la~~~~~~g-----------~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQG-----------RYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh-----------hcchhhHHHHHHHHH
Confidence 357889999999999 999999999999875
No 240
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.33 E-value=0.068 Score=39.76 Aligned_cols=90 Identities=16% Similarity=0.100 Sum_probs=62.4
Q ss_pred hhHHHHHHHHHHHHhhCCC------------CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHH
Q 030634 12 LLSEHNRKTAEANYAKDPL------------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTL 79 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~------------~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~ 79 (174)
+.|++|...+++|++..-. |+-++..|+.++..+|+|++.+ -.-+.|+..|.+==+++.+....|
T Consensus 23 g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L---~sA~~aL~YFNRRGEL~qdeGklW 99 (144)
T PF12968_consen 23 GAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECL---QSADRALRYFNRRGELHQDEGKLW 99 (144)
T ss_dssp T-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHH---HHHHHHHHHHHHH--TTSTHHHHH
T ss_pred hhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHH---HHHHHHHHHHhhccccccccchhH
Confidence 4899999999999986322 4557788899999999993221 111444445554446677776655
Q ss_pred ----HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634 80 ----WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (174)
Q Consensus 80 ----~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~ 115 (174)
++.+.++..+| +.++|+..|+++-+
T Consensus 100 IaaVfsra~Al~~~G-----------r~~eA~~~fr~agE 128 (144)
T PF12968_consen 100 IAAVFSRAVALEGLG-----------RKEEALKEFRMAGE 128 (144)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-----------ChHHHHHHHHHHHH
Confidence 67899999998 99999999999865
No 241
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.30 E-value=0.076 Score=50.55 Aligned_cols=92 Identities=21% Similarity=0.161 Sum_probs=76.7
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
.|+|+.++|..+++.....-|+|-..+-.+-.+|..++++ ++|+.+|+++++.+|+ -+-.+.+=++|.+
T Consensus 54 ~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~----------d~~~~~Ye~~~~~~P~-eell~~lFmayvR 122 (932)
T KOG2053|consen 54 FRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKL----------DEAVHLYERANQKYPS-EELLYHLFMAYVR 122 (932)
T ss_pred HHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhh----------hHHHHHHHHHHhhCCc-HHHHHHHHHHHHH
Confidence 5899999999888888888899999999999999999999 9999999999999999 8888888888888
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHH
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNEL 122 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~ 122 (174)
-+ +|.+=-+.--+.-+.-|+++.
T Consensus 123 ~~-----------~yk~qQkaa~~LyK~~pk~~y 145 (932)
T KOG2053|consen 123 EK-----------SYKKQQKAALQLYKNFPKRAY 145 (932)
T ss_pred HH-----------HHHHHHHHHHHHHHhCCcccc
Confidence 66 776544444444446888883
No 242
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=96.20 E-value=0.039 Score=50.18 Aligned_cols=91 Identities=15% Similarity=0.060 Sum_probs=79.8
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~ 92 (174)
....|+..|.+++..-|.....+.+.+.++++-+-. +..-.|+.--..|+++||....+|+.|+.++..++
T Consensus 389 ~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~-------~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~-- 459 (758)
T KOG1310|consen 389 IVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWR-------GDSYLALRDCHVALRLNPSIQKAHFRLARALNELT-- 459 (758)
T ss_pred HHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhcc-------ccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHh--
Confidence 456788999999999999999999999999886554 23367888888999999999999999999999999
Q ss_pred ccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 93 TADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 93 ~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
++.+|+++-..+....|.+.
T Consensus 460 ---------r~~eal~~~~alq~~~Ptd~ 479 (758)
T KOG1310|consen 460 ---------RYLEALSCHWALQMSFPTDV 479 (758)
T ss_pred ---------hHHHhhhhHHHHhhcCchhh
Confidence 99999999999999999666
No 243
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.15 E-value=0.038 Score=52.30 Aligned_cols=87 Identities=16% Similarity=0.084 Sum_probs=69.8
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC------HH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDA-----DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------HY 77 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~-----~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~------~~ 77 (174)
-..+.+++|...+++++...|... .++..+|.++...|++ ++|...+++++...... ..
T Consensus 463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~----------~~A~~~~~~al~~~~~~g~~~~~~~ 532 (903)
T PRK04841 463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGEL----------ARALAMMQQTEQMARQHDVYHYALW 532 (903)
T ss_pred HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhhhcchHHHHH
Confidence 456789999999999998655432 3567788888888888 99999999999764331 23
Q ss_pred HHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 78 a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
++.++|.++...| ++++|..++++++++
T Consensus 533 ~~~~la~~~~~~G-----------~~~~A~~~~~~al~~ 560 (903)
T PRK04841 533 SLLQQSEILFAQG-----------FLQAAYETQEKAFQL 560 (903)
T ss_pred HHHHHHHHHHHCC-----------CHHHHHHHHHHHHHH
Confidence 5678899999999 999999999999886
No 244
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.10 E-value=0.076 Score=44.67 Aligned_cols=110 Identities=13% Similarity=0.142 Sum_probs=82.5
Q ss_pred HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVID-PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (174)
Q Consensus 36 ~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld-P~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl 114 (174)
+-+..++..+|+| .-.+..+.+.++.+ |.++...-.||.+.+..| +.+.|..+|++.-
T Consensus 181 y~~~~~llG~kEy----------~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~G-----------D~k~a~~yf~~ve 239 (366)
T KOG2796|consen 181 YSMANCLLGMKEY----------VLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIG-----------DIKTAEKYFQDVE 239 (366)
T ss_pred HHHHHHHhcchhh----------hhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcc-----------cHHHHHHHHHHHH
Confidence 4455666667777 88899999999998 677777889999999999 9999999998443
Q ss_pred H----hCCCCH-----------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc--------------CCC
Q 030634 115 D----EEPTNE-----------------------LYQKSLEVSTKAPELHMELHKHGINQQTL--------------GGG 153 (174)
Q Consensus 115 ~----l~P~~~-----------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~--------------~~~ 153 (174)
+ ++-.-. .|.+.++.+|..|.+-.|=+-|++-.|++ .+.
T Consensus 240 k~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 240 KVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred HHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 2 221110 56678899999999998888888877777 222
Q ss_pred CchhhHHHHHHHH
Q 030634 154 SSASSAQVNFCIC 166 (174)
Q Consensus 154 ~~~~~~~~~~~~~ 166 (174)
----|+.+|+|-.
T Consensus 320 ~l~es~~~nL~tm 332 (366)
T KOG2796|consen 320 YLHESVLFNLTTM 332 (366)
T ss_pred chhhhHHHHHHHH
Confidence 3345788888854
No 245
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.97 E-value=0.094 Score=43.64 Aligned_cols=92 Identities=22% Similarity=0.228 Sum_probs=73.0
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHT 87 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~ 87 (174)
.+..+.|.+.++.+++..|.+++.|.....-++..++. +.|..+|++++..-|... ..|-....-=.
T Consensus 49 ~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~----------~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~ 118 (280)
T PF05843_consen 49 NKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDI----------NNARALFERAISSLPKEKQSKKIWKKFIEFES 118 (280)
T ss_dssp CS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcH----------HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHH
Confidence 45566699999999999999999999999999998887 999999999999877776 45555555555
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y 123 (174)
..| +.+.....++++.+.-|++..+
T Consensus 119 ~~G-----------dl~~v~~v~~R~~~~~~~~~~~ 143 (280)
T PF05843_consen 119 KYG-----------DLESVRKVEKRAEELFPEDNSL 143 (280)
T ss_dssp HHS------------HHHHHHHHHHHHHHTTTS-HH
T ss_pred HcC-----------CHHHHHHHHHHHHHHhhhhhHH
Confidence 656 9999999999999999987633
No 246
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.95 E-value=0.011 Score=48.57 Aligned_cols=57 Identities=25% Similarity=0.247 Sum_probs=52.9
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT 78 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a 78 (174)
+..+.|.+.+.+++.+.|.+...|+++|....+.|++ +.|...|++.+++||.+...
T Consensus 9 ~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~----------daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 9 GDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEF----------DAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred CChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccH----------HHHHHHHHHHHcCCcccccc
Confidence 4567889999999999999999999999999999998 99999999999999998763
No 247
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.94 E-value=0.11 Score=43.84 Aligned_cols=98 Identities=18% Similarity=0.218 Sum_probs=74.3
Q ss_pred CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHH-
Q 030634 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC- 109 (174)
Q Consensus 31 ~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~- 109 (174)
..+.-+.-+.-....|++ .+|...|..++..+|++.++...|+.+|...| +.+.|...
T Consensus 133 ~~e~~~~~~~~~~~~e~~----------~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g-----------~~e~A~~iL 191 (304)
T COG3118 133 EEEEALAEAKELIEAEDF----------GEAAPLLKQALQAAPENSEAKLLLAECLLAAG-----------DVEAAQAIL 191 (304)
T ss_pred HHHHHHHHhhhhhhccch----------hhHHHHHHHHHHhCcccchHHHHHHHHHHHcC-----------ChHHHHHHH
Confidence 334444555566677777 99999999999999999999999999999999 44333332
Q ss_pred ---------------------HHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 110 ---------------------FQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 110 ---------------------~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
+.++- --|+.......+.-+|++++....++..+.-.|+.
T Consensus 192 ~~lP~~~~~~~~~~l~a~i~ll~qaa-~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~ 252 (304)
T COG3118 192 AALPLQAQDKAAHGLQAQIELLEQAA-ATPEIQDLQRRLAADPDDVEAALALADQLHLVGRN 252 (304)
T ss_pred HhCcccchhhHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 22221 23444577788899999999999999999988886
No 248
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.92 E-value=0.016 Score=52.12 Aligned_cols=86 Identities=20% Similarity=0.117 Sum_probs=65.0
Q ss_pred hhhHHHHHHHHHHH-HhhCCC--------CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH---------hC
Q 030634 11 LLLSEHNRKTAEAN-YAKDPL--------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV---------ID 72 (174)
Q Consensus 11 ~~~~~eAl~~~~~a-l~~~P~--------~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~---------ld 72 (174)
+|.|..|.+.+... +...|. .--.|+++|.+++.+|.+ .-++..|.+|++ +.
T Consensus 253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y----------~~~~~~F~kAL~N~c~qL~~g~~ 322 (696)
T KOG2471|consen 253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCY----------QASSVLFLKALRNSCSQLRNGLK 322 (696)
T ss_pred hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhH----------HHHHHHHHHHHHHHHHHHhccCC
Confidence 45667776665432 334455 233578999999999999 889999999996 12
Q ss_pred C---------CCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 73 P---------AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 73 P---------~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
| +.-++.||.|..|...| +.-.|.+||.+++..-
T Consensus 323 ~~~~~tls~nks~eilYNcG~~~Lh~g-----------rPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 323 PAKTFTLSQNKSMEILYNCGLLYLHSG-----------RPLLAFQCFQKAVHVF 365 (696)
T ss_pred CCcceehhcccchhhHHhhhHHHHhcC-----------CcHHHHHHHHHHHHHH
Confidence 2 35678999999999999 9999999999977643
No 249
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.85 E-value=0.08 Score=47.71 Aligned_cols=93 Identities=20% Similarity=0.211 Sum_probs=68.6
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
+++.|+...++|++-++-.|.+..+|...|..-..+|+. +.|..+|+-|+.....+..-+.-- +|..
T Consensus 449 qL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~Lgdt----------dRaRaifelAi~qp~ldmpellwk--aYId- 515 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDT----------DRARAIFELAISQPALDMPELLWK--AYID- 515 (677)
T ss_pred HHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhH----------HHHHHHHHHHhcCcccccHHHHHH--Hhhh-
Confidence 577888888888888888888888888888888888887 888888888887765544432221 2221
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.....+.+++|...|++.|+..+...
T Consensus 516 ------FEi~~~E~ekaR~LYerlL~rt~h~k 541 (677)
T KOG1915|consen 516 ------FEIEEGEFEKARALYERLLDRTQHVK 541 (677)
T ss_pred ------hhhhcchHHHHHHHHHHHHHhcccch
Confidence 11224589999999999998888766
No 250
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.74 E-value=0.069 Score=46.32 Aligned_cols=89 Identities=11% Similarity=-0.020 Sum_probs=68.3
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh-CCCCHHH---HHHHHHHHH
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-DPAKHYT---LWSLGNAHT 87 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l-dP~~~~a---~~~LG~a~~ 87 (174)
|.+-+|.....+.++..|.|.-++-.--.+++.+|+. ..-...+++++.. +|+-|-. +-.++-.+.
T Consensus 117 g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~----------~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~ 186 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQ----------IGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLE 186 (491)
T ss_pred ccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccch----------hhhhhHHHHhccccCCCCcHHHHHHHHHHhhHH
Confidence 3556666777888888999988888888888888887 7777778888866 7776432 233445566
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+| -|++|.+..++++++||.+.
T Consensus 187 E~g-----------~y~dAEk~A~ralqiN~~D~ 209 (491)
T KOG2610|consen 187 ECG-----------IYDDAEKQADRALQINRFDC 209 (491)
T ss_pred Hhc-----------cchhHHHHHHhhccCCCcch
Confidence 777 88999999999999988887
No 251
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.73 E-value=0.0025 Score=54.68 Aligned_cols=53 Identities=15% Similarity=0.165 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+++||+.|..+|+++|.....|-..+.++..++ ....|+.-+..|+++||+.+
T Consensus 130 ~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~-----------kp~~airD~d~A~ein~Dsa 182 (377)
T KOG1308|consen 130 FDTAIELFTSAIELNPPLAILYAKRASVFLKLK-----------KPNAAIRDCDFAIEINPDSA 182 (377)
T ss_pred hhhhhcccccccccCCchhhhcccccceeeecc-----------CCchhhhhhhhhhccCcccc
Confidence 499999999999999999999999999999998 99999999999999999988
No 252
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.60 E-value=0.071 Score=50.51 Aligned_cols=90 Identities=16% Similarity=0.013 Sum_probs=65.5
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC------CCCHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLDAD----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID------PAKHYTLW 80 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~----a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld------P~~~~a~~ 80 (174)
.|..++|...........+.... .+..+|.++...|++ ++|+..+++++... +....++.
T Consensus 666 ~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~----------~~A~~~l~~al~~~~~~g~~~~~a~~~~ 735 (903)
T PRK04841 666 TGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF----------DEAEIILEELNENARSLRLMSDLNRNLI 735 (903)
T ss_pred CCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHhCchHHHHHHHH
Confidence 34555555555444332222221 256788899998888 99999999998862 23345788
Q ss_pred HHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 81 ~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+|.++...| +.++|..++.+|+++.....
T Consensus 736 ~la~a~~~~G-----------~~~~A~~~L~~Al~la~~~g 765 (903)
T PRK04841 736 LLNQLYWQQG-----------RKSEAQRVLLEALKLANRTG 765 (903)
T ss_pred HHHHHHHHcC-----------CHHHHHHHHHHHHHHhCccc
Confidence 9999999999 99999999999999876654
No 253
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.58 E-value=0.14 Score=41.21 Aligned_cols=97 Identities=19% Similarity=0.247 Sum_probs=69.5
Q ss_pred hHHhhhhHHHHHHHHHHHHhh----C-CCC--HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC-----
Q 030634 7 DFDRLLLSEHNRKTAEANYAK----D-PLD--ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----- 74 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~----~-P~~--~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~----- 74 (174)
||..--.+++|++.|..|+-. . +.. +..+.++|.++..+|+. ......+..|+..|+++++....
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~---~~E~~fl~~Al~~y~~a~~~e~~~~~~~ 162 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDE---ENEKRFLRKALEFYEEAYENEDFPIEGM 162 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCH---HHHHHHHHHHHHHHHHHHHhCcCCCCCc
Confidence 444445677888877777652 2 222 55667777777776663 22244568999999999976533
Q ss_pred -CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 75 -KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 75 -~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
.....|.+|.+...+| ++++|+.+|.+.+..-
T Consensus 163 ~~~~l~YLigeL~rrlg-----------~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 163 DEATLLYLIGELNRRLG-----------NYDEAKRWFSRVIGSK 195 (214)
T ss_pred hHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHcCC
Confidence 2467889999999999 9999999999988653
No 254
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=95.54 E-value=0.14 Score=39.62 Aligned_cols=70 Identities=14% Similarity=-0.009 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG 90 (174)
.+..+++...+...--+.|+.++.-..-|.+++..|++ .+|+..|+.+..-.|..+.+--.++.|+..+|
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w----------~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDW----------DDALRLLRELEERAPGFPYAKALLALCLYALG 92 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCH----------HHHHHHHHHHhccCCCChHHHHHHHHHHHHcC
Confidence 44677788888888889999999999999999999999 99999999999999999999999999999988
No 255
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.44 E-value=0.072 Score=38.75 Aligned_cols=74 Identities=15% Similarity=0.115 Sum_probs=52.9
Q ss_pred HHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634 38 WGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (174)
Q Consensus 38 lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~---a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl 114 (174)
++..++..|++ -+|+++.+..+...+++.. .+..-|.++..++.-+.+..-..--+-.|+++|.++.
T Consensus 2 ~A~~~~~rGnh----------iKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~ 71 (111)
T PF04781_consen 2 KAKDYFARGNH----------IKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAV 71 (111)
T ss_pred hHHHHHHccCH----------HHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHh
Confidence 35566777777 9999999999999998884 4556688887766332222222223567888888888
Q ss_pred HhCCCCH
Q 030634 115 DEEPTNE 121 (174)
Q Consensus 115 ~l~P~~~ 121 (174)
.+.|+.+
T Consensus 72 ~Lsp~~A 78 (111)
T PF04781_consen 72 ELSPDSA 78 (111)
T ss_pred ccChhHH
Confidence 8888875
No 256
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.43 E-value=0.17 Score=40.57 Aligned_cols=86 Identities=12% Similarity=0.105 Sum_probs=61.2
Q ss_pred hhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Q 030634 12 LLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY-TLWSLGNAHT 87 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~-a~~~LG~a~~ 87 (174)
+.|++|+..++.++....+. +-+-.++|+++...|++ ++|+..+...-. +.... .--..|.++.
T Consensus 103 ~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~----------D~AL~~L~t~~~--~~w~~~~~elrGDill 170 (207)
T COG2976 103 NNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKA----------DAALKTLDTIKE--ESWAAIVAELRGDILL 170 (207)
T ss_pred ccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhH----------HHHHHHHhcccc--ccHHHHHHHHhhhHHH
Confidence 56777877777776543221 34567889999998888 888887765322 22222 2345788998
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
..| +-++|...|++|++.+++.
T Consensus 171 ~kg-----------~k~~Ar~ay~kAl~~~~s~ 192 (207)
T COG2976 171 AKG-----------DKQEARAAYEKALESDASP 192 (207)
T ss_pred HcC-----------chHHHHHHHHHHHHccCCh
Confidence 888 9999999999999998544
No 257
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.43 E-value=0.034 Score=31.77 Aligned_cols=30 Identities=33% Similarity=0.437 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l 71 (174)
+.++.++|.++...|++ ++|+.++++++++
T Consensus 2 a~~~~~la~~~~~~g~~----------~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRY----------EEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhc----------chhhHHHHHHHHH
Confidence 46789999999999999 9999999999876
No 258
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.34 E-value=0.048 Score=46.92 Aligned_cols=69 Identities=19% Similarity=0.242 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHhCCCCccchhhhhcCHHHHH
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY----TLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~----a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai 107 (174)
++.+-.-|+-|+..++| ..|+.+|.++|+..-.|++ .|.|.+-|...+| +|..|+
T Consensus 81 Aen~KeeGN~~fK~Kry----------k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~-----------NyRs~l 139 (390)
T KOG0551|consen 81 AENYKEEGNEYFKEKRY----------KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLG-----------NYRSAL 139 (390)
T ss_pred HHHHHHHhHHHHHhhhH----------HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHH-----------HHHHHH
Confidence 44555568888888888 9999999999998555443 4789999999988 999999
Q ss_pred HHHHHHHHhCCCCH
Q 030634 108 ECFQRAVDEEPTNE 121 (174)
Q Consensus 108 ~~~~kAl~l~P~~~ 121 (174)
.-..+|+.++|.+.
T Consensus 140 ~Dcs~al~~~P~h~ 153 (390)
T KOG0551|consen 140 NDCSAALKLKPTHL 153 (390)
T ss_pred HHHHHHHhcCcchh
Confidence 99999999999998
No 259
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.26 E-value=1.4 Score=37.02 Aligned_cols=125 Identities=10% Similarity=0.001 Sum_probs=84.3
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~ 92 (174)
+-..|+++...++.++|.+-.+|...-.++..++.. +.+-+..+.++++-+|++-..|.-.-.+...+|..
T Consensus 58 ~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~d---------L~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~ 128 (318)
T KOG0530|consen 58 KSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSD---------LNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDP 128 (318)
T ss_pred cCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHH---------HHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCc
Confidence 456788888888888888888887777777665442 36666677777777777777776666666665511
Q ss_pred c------------------------cchhhhhcCHHHHHHHHHHHHHhCCCCH---------------------------
Q 030634 93 T------------------------ADLSEAKGDFDKASECFQRAVDEEPTNE--------------------------- 121 (174)
Q Consensus 93 ~------------------------~~~~~a~~~~~~Ai~~~~kAl~l~P~~~--------------------------- 121 (174)
. .=.-...+.|+.-+.+..+.|+.|--|-
T Consensus 129 s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfvi~~~~~~~~~~~le~El~ 208 (318)
T KOG0530|consen 129 SFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSAWNQRYFVITNTKGVISKAELERELN 208 (318)
T ss_pred ccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccchhheeeEEEEeccCCccHHHHHHHHH
Confidence 0 0000223467777777777777664332
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHh
Q 030634 122 LYQKSLEVSTKAPELHMELHKHGIN 146 (174)
Q Consensus 122 ~y~~Al~l~~~~~~~~~~l~~~~~~ 146 (174)
...+.+.++|....++..|..++..
T Consensus 209 yt~~~I~~vP~NeSaWnYL~G~l~~ 233 (318)
T KOG0530|consen 209 YTKDKILLVPNNESAWNYLKGLLEL 233 (318)
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHh
Confidence 3466789999999999999888775
No 260
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=95.15 E-value=0.027 Score=51.71 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=61.3
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDA--DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~--~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
..+|.-.+|+.++..++...|... .++..+|.++..+|.. -+|--++..|+.-.|....-+|.+|+++
T Consensus 224 R~~G~~~~A~~Ca~~a~hf~~~h~kdi~lLSlaTiL~RaG~s----------adA~iILhAA~~dA~~~t~n~y~l~~i~ 293 (886)
T KOG4507|consen 224 RIKGEPYQAVECAMRALHFSSRHNKDIALLSLATVLHRAGFS----------ADAAVILHAALDDADFFTSNYYTLGNIY 293 (886)
T ss_pred HHcCChhhhhHHHHHHhhhCCcccccchhhhHHHHHHHcccc----------cchhheeehhccCCccccccceeHHHHH
Confidence 344566666666666666655532 2555666666666665 5555556666665555555566666666
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
..+| +|...+.+|..+.+.+|...
T Consensus 294 aml~-----------~~N~S~~~ydha~k~~p~f~ 317 (886)
T KOG4507|consen 294 AMLG-----------EYNHSVLCYDHALQARPGFE 317 (886)
T ss_pred HHHh-----------hhhhhhhhhhhhhccCcchh
Confidence 6666 89999999999999999765
No 261
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=95.11 E-value=0.039 Score=47.29 Aligned_cols=80 Identities=10% Similarity=0.079 Sum_probs=65.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHhCCCCccchhhh
Q 030634 21 AEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS-LGNAHTSCGFLTADLSEA 99 (174)
Q Consensus 21 ~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~-LG~a~~~lG~~~~~~~~a 99 (174)
+.++-...|+|+..|...+.-....|.+ .+--..|-+++...|.+++.|.. -..-+...+
T Consensus 96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y----------~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~a--------- 156 (435)
T COG5191 96 LYRSTNKFFNDPKIWSQYAAYVIKKKMY----------GEMKNIFAECLTKHPLNVDLWIYCCAFELFEIA--------- 156 (435)
T ss_pred eehhhhcCCCCcHHHHHHHHHHHHHHHH----------HHHHHHHHHHHhcCCCCceeeeeeccchhhhhc---------
Confidence 4455567899999998887766665555 88888999999999999999876 444456656
Q ss_pred hcCHHHHHHHHHHHHHhCCCCH
Q 030634 100 KGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 100 ~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+++.+...|.++|+.||+++
T Consensus 157 --ni~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 157 --NIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred --cHHHHHHHHHhhhccCCCCc
Confidence 99999999999999999998
No 262
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.07 E-value=0.25 Score=44.64 Aligned_cols=92 Identities=17% Similarity=0.187 Sum_probs=80.9
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
++++.+..|...+++|+..+-.+...|...+.+-+..... .-|...+.+|+.+-|.-...|+..-.+--.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~v----------NhARNv~dRAvt~lPRVdqlWyKY~ymEE~ 153 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQV----------NHARNVWDRAVTILPRVDQLWYKYIYMEEM 153 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhH----------hHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 3566788899999999999999999999999988887666 999999999999999999999988777778
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+| +..-|.+.|.+=++..|+-.
T Consensus 154 Lg-----------Ni~gaRqiferW~~w~P~eq 175 (677)
T KOG1915|consen 154 LG-----------NIAGARQIFERWMEWEPDEQ 175 (677)
T ss_pred hc-----------ccHHHHHHHHHHHcCCCcHH
Confidence 77 88888888888888888765
No 263
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.03 E-value=0.45 Score=43.47 Aligned_cols=139 Identities=12% Similarity=0.021 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH-------hCCCCHHHHHHHHHHH
Q 030634 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV-------IDPAKHYTLWSLGNAH 86 (174)
Q Consensus 14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~-------ldP~~~~a~~~LG~a~ 86 (174)
..+|.+.++.+. +-.+..+.+.+|.++..-+.- ....++.|+..|+.+.+ .- ++.+.+.+|.+|
T Consensus 228 ~~~a~~~~~~~a--~~g~~~a~~~~g~~y~~G~~g-----~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAA--KLGHSEAQYALGICYLAGTYG-----VTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHH--hhcchHHHHHHHHHHhhcccc-----ccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHH
Confidence 456777777663 467889999999999764221 23445899999998877 33 666889999999
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHHHHhccccCCCCchhhHHHHHHHH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQVNFCIC 166 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (174)
.... .+... +++.|+.+|.++-++...+..|..+.-.....+.--...+..++..... --.+++.+++|+|
T Consensus 299 ~~g~-~~~~~-----d~~~A~~~~~~aA~~g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~---~G~~~A~~~la~~ 369 (552)
T KOG1550|consen 299 LQGL-GVEKI-----DYEKALKLYTKAAELGNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK---AGHILAIYRLALC 369 (552)
T ss_pred hcCC-CCccc-----cHHHHHHHHHHHHhcCCchHHHHHHHHHHcCCccccHHHHHHHHHHHHH---cCChHHHHHHHHH
Confidence 8853 11111 7899999999999998877765544322111111111122222222222 2256788888888
Q ss_pred Hhhh
Q 030634 167 VHQM 170 (174)
Q Consensus 167 ~~~~ 170 (174)
.+.+
T Consensus 370 y~~G 373 (552)
T KOG1550|consen 370 YELG 373 (552)
T ss_pred HHhC
Confidence 8876
No 264
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.96 E-value=0.19 Score=43.62 Aligned_cols=78 Identities=14% Similarity=0.039 Sum_probs=48.5
Q ss_pred CChhhHHhhhhHHHHHHHHHHHHhh-CCCCH---HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 030634 3 FSQSDFDRLLLSEHNRKTAEANYAK-DPLDA---DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT 78 (174)
Q Consensus 3 ~~~~~~~~~~~~~eAl~~~~~al~~-~P~~~---~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a 78 (174)
||..-+-.+|+-..-...+++.+.. +|+-| -..-.++..+.+.|-+ ++|.+..++++++||.|..+
T Consensus 142 fsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y----------~dAEk~A~ralqiN~~D~Wa 211 (491)
T KOG2610|consen 142 FSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIY----------DDAEKQADRALQINRFDCWA 211 (491)
T ss_pred hhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccc----------hhHHHHHHhhccCCCcchHH
Confidence 4555555566666666666666666 55543 3333344455555555 77777777777777777777
Q ss_pred HHHHHHHHHhCC
Q 030634 79 LWSLGNAHTSCG 90 (174)
Q Consensus 79 ~~~LG~a~~~lG 90 (174)
....+.++..-|
T Consensus 212 ~Ha~aHVlem~~ 223 (491)
T KOG2610|consen 212 SHAKAHVLEMNG 223 (491)
T ss_pred HHHHHHHHHhcc
Confidence 777777666555
No 265
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=94.80 E-value=0.12 Score=29.85 Aligned_cols=34 Identities=18% Similarity=0.205 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHH--HHHHHHhCCCC
Q 030634 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC--FQRAVDEEPTN 120 (174)
Q Consensus 76 ~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~--~~kAl~l~P~~ 120 (174)
++.++.+|..+...| ++++|++. |+-+..++|.|
T Consensus 1 ~e~~y~~a~~~y~~~-----------ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKG-----------KYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHh-----------hHHHHHHHHHHHHHHHhcccC
Confidence 467889999999988 99999999 66998888875
No 266
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=94.61 E-value=0.96 Score=38.40 Aligned_cols=89 Identities=13% Similarity=0.154 Sum_probs=66.6
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN-AHT 87 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~-a~~ 87 (174)
++....+.-+..+++|++.+|++...+..+=.+..+.... ++....+++++..+|+++..|...=. ...
T Consensus 42 ~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~----------~~l~~~we~~l~~~~~~~~LW~~yL~~~q~ 111 (321)
T PF08424_consen 42 ERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDS----------EKLAKKWEELLFKNPGSPELWREYLDFRQS 111 (321)
T ss_pred hHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHCCCChHHHHHHHHHHHH
Confidence 4566778889999999999999999888877777776655 77888999999999999999865433 333
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
..+ .-.+++....|.++|+.
T Consensus 112 ~~~---------~f~v~~~~~~y~~~l~~ 131 (321)
T PF08424_consen 112 NFA---------SFTVSDVRDVYEKCLRA 131 (321)
T ss_pred Hhc---------cCcHHHHHHHHHHHHHH
Confidence 222 11566777777766654
No 267
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=94.55 E-value=0.27 Score=45.11 Aligned_cols=89 Identities=19% Similarity=0.081 Sum_probs=73.6
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHH-HHHHhCCCCHHHHHHH------HH
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFE-EALVIDPAKHYTLWSL------GN 84 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~le-kAl~ldP~~~~a~~~L------G~ 84 (174)
+....+.......+..+|+++.+..++|.++...|.. ..++..+. .+.+..|++..+...+ |.
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~----------~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 150 (620)
T COG3914 81 ADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQ----------FLALADISEIAEWLSPDNAEFLGHLIRFYQLGR 150 (620)
T ss_pred ccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhH----------HHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHH
Confidence 4556777888899999999999999999999887776 55555554 5999999999987776 55
Q ss_pred HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+..+| +..++.....+++++.|++.
T Consensus 151 ~~~~l~-----------~~~~~~~~l~~~~d~~p~~~ 176 (620)
T COG3914 151 YLKLLG-----------RTAEAELALERAVDLLPKYP 176 (620)
T ss_pred HHHHhc-----------cHHHHHHHHHHHHHhhhhhh
Confidence 555555 99999999999999999987
No 268
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.33 E-value=0.19 Score=45.50 Aligned_cols=69 Identities=12% Similarity=-0.039 Sum_probs=58.5
Q ss_pred hhhhHHHHHHHHHHHHh---------h---------CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634 10 RLLLSEHNRKTAEANYA---------K---------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~---------~---------~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l 71 (174)
+++.|.-+...|.+|++ + .-..-+++|+.|..+...|++ ..|.+||.++...
T Consensus 295 ~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grP----------l~AfqCf~~av~v 364 (696)
T KOG2471|consen 295 QLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRP----------LLAFQCFQKAVHV 364 (696)
T ss_pred ehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCc----------HHHHHHHHHHHHH
Confidence 56777778888888874 1 223568999999999999999 9999999999999
Q ss_pred CCCCHHHHHHHHHHHHh
Q 030634 72 DPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 72 dP~~~~a~~~LG~a~~~ 88 (174)
.-.+|..|..|+.|...
T Consensus 365 fh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 365 FHRNPRLWLRLAECCIM 381 (696)
T ss_pred HhcCcHHHHHHHHHHHH
Confidence 99999999999988753
No 269
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=94.29 E-value=0.49 Score=47.41 Aligned_cols=92 Identities=12% Similarity=0.109 Sum_probs=55.0
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGN 84 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~--~~~a~~~LG~ 84 (174)
-|++-..|++|.++++.-++..-+....|..+|..++...+- +.|...+.+|++--|+ +.+..--.+.
T Consensus 1539 iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~----------~aa~~lL~rAL~~lPk~eHv~~IskfAq 1608 (1710)
T KOG1070|consen 1539 IYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEA----------EAARELLKRALKSLPKQEHVEFISKFAQ 1608 (1710)
T ss_pred HHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHH----------HHHHHHHHHHHhhcchhhhHHHHHHHHH
Confidence 355666666677777666666666667777777666665554 5566666666666666 4454445555
Q ss_pred HHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~ 119 (174)
+-++.| +-+.+...|+-.|.-.|.
T Consensus 1609 LEFk~G-----------DaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1609 LEFKYG-----------DAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred HHhhcC-----------CchhhHHHHHHHHhhCcc
Confidence 555555 545555555544444443
No 270
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=94.19 E-value=0.31 Score=43.61 Aligned_cols=96 Identities=14% Similarity=-0.047 Sum_probs=68.2
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCH----HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH-HHHHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDA----DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT-LWSLG 83 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~----~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a-~~~LG 83 (174)
...++.++|++.+++++......+ -+++-+|.++..+.++ ++|..+|.+..+.+.-.... .|..|
T Consensus 278 ~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w----------~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 278 RLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDW----------EEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchH----------HHHHHHHHHHHhccccHHHHHHHHHH
Confidence 345689999999999886444433 3667888899999898 99999999999976554433 46788
Q ss_pred HHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634 84 NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (174)
Q Consensus 84 ~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P 118 (174)
.++..+|+. ..+...-++|.++|+++-.+-.
T Consensus 348 ~c~~~l~~~----~~~~~~~~~a~~l~~~vp~l~~ 378 (468)
T PF10300_consen 348 ACLLMLGRE----EEAKEHKKEAEELFRKVPKLKQ 378 (468)
T ss_pred HHHHhhccc----hhhhhhHHHHHHHHHHHHHHHh
Confidence 899998811 1111122788888887665543
No 271
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=1 Score=39.81 Aligned_cols=107 Identities=13% Similarity=0.125 Sum_probs=80.8
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-cc-cchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FE-SVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~-~~-~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
..+-+++++.-...+..+|....+|+..-.++...-- .+ ........+++-+...+.+++.+|++..+|+-+-.++.+
T Consensus 42 ~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~ 121 (421)
T KOG0529|consen 42 KEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQK 121 (421)
T ss_pred cccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 3456788888899999999998888776555533211 00 111223356888999999999999999999999999998
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---LYQKS 126 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---~y~~A 126 (174)
.+ .-++..=+....+++++||.|- .||+-
T Consensus 122 ~p---------~~~~~~EL~lcek~L~~D~RNfh~W~YRRf 153 (421)
T KOG0529|consen 122 NP---------HSDWNTELQLCEKALKQDPRNFHAWHYRRF 153 (421)
T ss_pred CC---------CchHHHHHHHHHHHHhcCcccccchHHHHH
Confidence 76 2268899999999999999887 45543
No 272
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=93.87 E-value=0.15 Score=41.35 Aligned_cols=45 Identities=18% Similarity=0.129 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 61 AISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 61 Ai~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
|+.+|.+|+.+.|++...|..||.+....| +.=.|+-+|-|++-.
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~-----------~~l~avy~y~Rsl~~ 45 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQG-----------DDLDAVYYYIRSLAV 45 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT------------HHHHHHHHHHHHSS
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhcccc-----------chHHHHHHHHHHHhc
Confidence 678999999999999999999999999988 999999998887744
No 273
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.74 E-value=1.6 Score=36.32 Aligned_cols=100 Identities=14% Similarity=0.094 Sum_probs=68.3
Q ss_pred HHhhhhHHHHHHHHHHHHhhCC----CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC---------
Q 030634 8 FDRLLLSEHNRKTAEANYAKDP----LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--------- 74 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P----~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~--------- 74 (174)
..+.|++.-|...+.++...++ ..+.+.+-.+..+...|+. .+|+..++..++....
T Consensus 156 aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~----------~~Ai~~L~~~~~~~~~~~~~~~~~~ 225 (352)
T PF02259_consen 156 ARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQ----------EEAIQKLRELLKCRLSKNIDSISNA 225 (352)
T ss_pred HHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHhhhccccccHH
Confidence 4567888899999988887652 2578888889999998888 9999999888882111
Q ss_pred ------------------CHHHHHHHHHHHHhCCCCccchhhh------hcCHHHHHHHHHHHHHhCCCCH
Q 030634 75 ------------------KHYTLWSLGNAHTSCGFLTADLSEA------KGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 75 ------------------~~~a~~~LG~a~~~lG~~~~~~~~a------~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
...-.-..+.++..+| .+-.. .+..++++..|++|++++|+..
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a----~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLA----KWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHhhccccccccccccchhhhhHHHHHHHHHHHH----HHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 1111123344554444 22222 2578888888888888888766
No 274
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=93.72 E-value=0.8 Score=42.12 Aligned_cols=85 Identities=16% Similarity=0.041 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhCCCCHHHHHHH--HHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCcc
Q 030634 17 NRKTAEANYAKDPLDADNLTRW--GEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTA 94 (174)
Q Consensus 17 Al~~~~~al~~~P~~~~a~~~l--g~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~ 94 (174)
++..+..-+.++|.+++.+... ...+...+.. ..++-.++.++..||++..++.+||.++...|
T Consensus 50 ~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~---- 115 (620)
T COG3914 50 AIYALLLGIAINDVNPELLLAAFLSILLAPLADS----------TLAFLAKRIPLSVNPENCPAVQNLAAALELDG---- 115 (620)
T ss_pred HHHHHHccCccCCCCHHHHHHHHHHhhccccccc----------hhHHHHHhhhHhcCcccchHHHHHHHHHHHhh----
Confidence 3334444445778888875443 5555556665 79999999999999999999999999998876
Q ss_pred chhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 95 DLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 95 ~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
..+.-++..-..+.+..|++.
T Consensus 116 ------~~~~~~~~~~~~a~~~~~~~~ 136 (620)
T COG3914 116 ------LQFLALADISEIAEWLSPDNA 136 (620)
T ss_pred ------hHHHHHHHHHHHHHhcCcchH
Confidence 234445555555888888887
No 275
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.63 E-value=3.4 Score=33.81 Aligned_cols=91 Identities=15% Similarity=0.029 Sum_probs=60.1
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
....+..|.+.+..+.. -.++.....+|.++...... ....++|+..|+ ...+..++.+.++||.+|..-
T Consensus 53 ~~~~~~~a~~~~~~a~~--~~~~~a~~~l~~~y~~g~gv------~~~~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G 122 (292)
T COG0790 53 YPPDYAKALKSYEKAAE--LGDAAALALLGQMYGAGKGV------SRDKTKAADWYR--CAAADGLAEALFNLGLMYANG 122 (292)
T ss_pred ccccHHHHHHHHHHhhh--cCChHHHHHHHHHHHhccCc------cccHHHHHHHHH--HHhhcccHHHHHhHHHHHhcC
Confidence 44567777777777755 33447777777777653332 223477888888 444577788888888888762
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
. . ...++.+|..+|++|.+..
T Consensus 123 ~----g---v~~d~~~A~~~~~~Aa~~g 143 (292)
T COG0790 123 R----G---VPLDLVKALKYYEKAAKLG 143 (292)
T ss_pred C----C---cccCHHHHHHHHHHHHHcC
Confidence 2 0 1227888888888888773
No 276
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=93.51 E-value=0.82 Score=38.46 Aligned_cols=52 Identities=19% Similarity=0.257 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
..|+..-+.+|.++|-+-..|...-.++..++ .+..+-++++.+.++-+|+|
T Consensus 60 ~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~----------~dL~~El~~l~eI~e~npKN 111 (318)
T KOG0530|consen 60 PRALQLTEDAIRLNPANYTVWQYRRVILRHLM----------SDLNKELEYLDEIIEDNPKN 111 (318)
T ss_pred HHHHHHHHHHHHhCcccchHHHHHHHHHHHhH----------HHHHHHHHHHHHHHHhCccc
Confidence 68888889999999999999998888888876 24566666666666666654
No 277
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=93.46 E-value=0.53 Score=41.33 Aligned_cols=90 Identities=22% Similarity=0.182 Sum_probs=67.8
Q ss_pred hhHHhhhhHHHHHHHHHHHHhhCC----CC------HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC---
Q 030634 6 SDFDRLLLSEHNRKTAEANYAKDP----LD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--- 72 (174)
Q Consensus 6 ~~~~~~~~~~eAl~~~~~al~~~P----~~------~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld--- 72 (174)
|-|.++..+++|+....+|+++-- +| .-+++++++++..+|+. -+|.++.++|.++.
T Consensus 170 slf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~L----------gdA~e~C~Ea~klal~~ 239 (518)
T KOG1941|consen 170 SLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRL----------GDAMECCEEAMKLALQH 239 (518)
T ss_pred HHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhccc----------ccHHHHHHHHHHHHHHh
Confidence 568999999999999999988632 22 23678889999999998 78888888887762
Q ss_pred ---CCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 73 ---PAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 73 ---P~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
|-......-+|.+|...| +.+.|..-|+.|...
T Consensus 240 Gdra~~arc~~~~aDIyR~~g-----------d~e~af~rYe~Am~~ 275 (518)
T KOG1941|consen 240 GDRALQARCLLCFADIYRSRG-----------DLERAFRRYEQAMGT 275 (518)
T ss_pred CChHHHHHHHHHHHHHHHhcc-----------cHhHHHHHHHHHHHH
Confidence 334556677899999988 666666666666554
No 278
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.40 E-value=0.81 Score=38.50 Aligned_cols=62 Identities=21% Similarity=0.277 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (174)
Q Consensus 34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA 113 (174)
++..++..+...|++ +.++..+++.+.++|-+-.+|..+-.+|+..| +...|+..|++.
T Consensus 155 ~l~~lae~~~~~~~~----------~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g-----------~~~~ai~~y~~l 213 (280)
T COG3629 155 ALTKLAEALIACGRA----------DAVIEHLERLIELDPYDEPAYLRLMEAYLVNG-----------RQSAAIRAYRQL 213 (280)
T ss_pred HHHHHHHHHHhcccH----------HHHHHHHHHHHhcCccchHHHHHHHHHHHHcC-----------CchHHHHHHHHH
Confidence 444555555555555 99999999999999999999999999999988 999999999887
Q ss_pred HHh
Q 030634 114 VDE 116 (174)
Q Consensus 114 l~l 116 (174)
-+.
T Consensus 214 ~~~ 216 (280)
T COG3629 214 KKT 216 (280)
T ss_pred HHH
Confidence 663
No 279
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=93.35 E-value=0.35 Score=40.27 Aligned_cols=84 Identities=15% Similarity=0.100 Sum_probs=57.5
Q ss_pred HHHHHHHHHhcCcccch---hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchh------hhhcCHHHH
Q 030634 36 TRWGEALLELSQFESVS---DSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLS------EAKGDFDKA 106 (174)
Q Consensus 36 ~~lg~~l~~~g~~~~~~---~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~------~a~~~~~~A 106 (174)
-..+.++...|++.... ...+..++++..|+++++++|+...+|+.+|..+..+-+..+..+ ....-...|
T Consensus 249 ~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 328 (352)
T PF02259_consen 249 ELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQA 328 (352)
T ss_pred HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHH
Confidence 44455666555542211 123556999999999999999999999999999876542221111 122334669
Q ss_pred HHHHHHHHHhCCC
Q 030634 107 SECFQRAVDEEPT 119 (174)
Q Consensus 107 i~~~~kAl~l~P~ 119 (174)
+.+|-+|+...|+
T Consensus 329 i~~y~~al~~~~~ 341 (352)
T PF02259_consen 329 IEGYLKALSLGSK 341 (352)
T ss_pred HHHHHHHHhhCCC
Confidence 9999999999998
No 280
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=93.28 E-value=0.46 Score=39.72 Aligned_cols=52 Identities=21% Similarity=0.264 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+.|..+.++.+.++|+++.-+-..|.+|..+| -+.-|+.-+...++.-|+.+
T Consensus 198 ~~al~~~~r~l~l~P~dp~eirDrGliY~ql~-----------c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 198 ELALRVAERLLDLNPEDPYEIRDRGLIYAQLG-----------CYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred HHHHHHHHHHHhhCCCChhhccCcHHHHHhcC-----------CchhhHHHHHHHHHhCCCch
Confidence 99999999999999999999999999999999 99999999999888888877
No 281
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=93.21 E-value=0.77 Score=36.85 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHhCCCCccchhhhhcCHHH
Q 030634 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KHYTLWSLGNAHTSCGFLTADLSEAKGDFDK 105 (174)
Q Consensus 30 ~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~----~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~ 105 (174)
++++..+.+|.-|.... . ++|+..+-++|++.+. |++++..|+.++..+| ++++
T Consensus 139 ~t~elq~aLAtyY~krD-~----------~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~-----------~~e~ 196 (203)
T PF11207_consen 139 ETAELQYALATYYTKRD-P----------EKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLK-----------NYEQ 196 (203)
T ss_pred CCHHHHHHHHHHHHccC-H----------HHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhc-----------chhh
Confidence 36777777777665432 2 8999999999999555 5899999999999998 8887
Q ss_pred H
Q 030634 106 A 106 (174)
Q Consensus 106 A 106 (174)
|
T Consensus 197 A 197 (203)
T PF11207_consen 197 A 197 (203)
T ss_pred h
Confidence 7
No 282
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=93.21 E-value=1.6 Score=42.48 Aligned_cols=96 Identities=13% Similarity=0.053 Sum_probs=76.3
Q ss_pred hhhHHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLD---ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~---~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
-..|++|+..|++...-.|+- -++.++.|.++++...-.. +...+++|+.-|++.- --|.-|-=|..-+.+|.
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 563 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQG---DPRDFTQALSEFSYLH-GGVGAPLEYLGKALVYQ 563 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcC---ChHHHHHHHHHHHHhc-CCCCCchHHHhHHHHHH
Confidence 357999999999999999884 6788999999887543211 1135688888888844 35777766777777888
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+| +|++-+++|.-|++.-|+++
T Consensus 564 ~~~-----------~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 564 RLG-----------EYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred Hhh-----------hHHHHHHHHHHHHHhcCCCC
Confidence 888 99999999999999999998
No 283
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=93.18 E-value=0.39 Score=33.26 Aligned_cols=49 Identities=18% Similarity=0.384 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHh----CCCC-----HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634 59 NEAISKFEEALVI----DPAK-----HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (174)
Q Consensus 59 ~eAi~~lekAl~l----dP~~-----~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P 118 (174)
.+|++.+.+.... +... ..+..++|.++...| ++++|+..+++|+++-.
T Consensus 15 ~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G-----------~~~~A~~~l~eAi~~Ar 72 (94)
T PF12862_consen 15 SEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFG-----------HYEEALQALEEAIRLAR 72 (94)
T ss_pred HHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhC-----------CHHHHHHHHHHHHHHHH
Confidence 7777766666544 2222 457788999999999 99999999999998754
No 284
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.09 E-value=3.1 Score=39.04 Aligned_cols=91 Identities=14% Similarity=0.113 Sum_probs=73.8
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLD------ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW 80 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~------~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~ 80 (174)
+-=++..|.-+++.|...+.--|.| +....++..||..+.+. +.|++.+++|-+.||.++-..+
T Consensus 363 ~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QL----------D~A~E~~~EAE~~d~~~~l~q~ 432 (872)
T KOG4814|consen 363 KLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQL----------DNAVEVYQEAEEVDRQSPLCQL 432 (872)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHH----------HHHHHHHHHHHhhccccHHHHH
Confidence 3345678888889999888866654 45677888899998888 9999999999999999999888
Q ss_pred HHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (174)
Q Consensus 81 ~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P 118 (174)
.+-.+...-| .-++|+.+..+....--
T Consensus 433 ~~~~~~~~E~-----------~Se~AL~~~~~~~s~~~ 459 (872)
T KOG4814|consen 433 LMLQSFLAED-----------KSEEALTCLQKIKSSED 459 (872)
T ss_pred HHHHHHHHhc-----------chHHHHHHHHHHHhhhc
Confidence 8877777766 88999998888775533
No 285
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.94 E-value=2 Score=35.63 Aligned_cols=99 Identities=17% Similarity=0.087 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHHhhC-----CC-CHHHHHHHHHHHHHhcCcccch----h-----hhhhHHHHHHHHHHHHHhCCCCHH
Q 030634 13 LSEHNRKTAEANYAKD-----PL-DADNLTRWGEALLELSQFESVS----D-----SKKIINEAISKFEEALVIDPAKHY 77 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~-----P~-~~~a~~~lg~~l~~~g~~~~~~----~-----~~~~~~eAi~~lekAl~ldP~~~~ 77 (174)
.|++|..++.++-... .+ --.++...+.++.+.|.-.+.- + .....++|+.+++++++|.-+-..
T Consensus 29 k~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Gr 108 (288)
T KOG1586|consen 29 KYEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGR 108 (288)
T ss_pred chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhH
Confidence 7888888888775432 11 1234444444444444311100 0 012347777777777777544332
Q ss_pred H------HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 78 T------LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 78 a------~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
. ++.+|.+|..- ..++++||.+|++|-+.-....
T Consensus 109 f~~aAk~~~~iaEiyEsd----------l~d~ekaI~~YE~Aae~yk~ee 148 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESD----------LQDFEKAIAHYEQAAEYYKGEE 148 (288)
T ss_pred HHHHHhhhhhHHHHHhhh----------HHHHHHHHHHHHHHHHHHcchh
Confidence 2 22445544331 2488999999999887655443
No 286
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=92.93 E-value=1 Score=30.86 Aligned_cols=47 Identities=19% Similarity=0.278 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHH---HHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGN---AHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~---a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
++|+..++++++..++.++-+..||. +|...| +|.+++++--+-+++
T Consensus 23 ~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~G-----------kyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 23 QQALQKWRKALEKITDREDRFRVLGYLIQAHMEWG-----------KYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHH
Confidence 99999999999999999988877765 567777 999999887776654
No 287
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=92.92 E-value=0.44 Score=43.10 Aligned_cols=59 Identities=20% Similarity=0.115 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 030634 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81 (174)
Q Consensus 14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~ 81 (174)
+.+--+.|.+++..+|++|+.|..-|.-.+..+.- ++-|...|.++|+.+|+++..|..
T Consensus 121 ~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~n---------i~saRalflrgLR~npdsp~Lw~e 179 (568)
T KOG2396|consen 121 YGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLN---------IESARALFLRGLRFNPDSPKLWKE 179 (568)
T ss_pred hhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccc---------hHHHHHHHHHHhhcCCCChHHHHH
Confidence 77778899999999999999999999888887662 399999999999999999998753
No 288
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.87 E-value=0.36 Score=27.89 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHH--HHHHHHhCCCC
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISK--FEEALVIDPAK 75 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~--lekAl~ldP~~ 75 (174)
++.++.+|..+...|++ ++|+.. |+-+..++|.|
T Consensus 1 ~e~~y~~a~~~y~~~ky----------~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKY----------DEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhH----------HHHHHHHHHHHHHHhcccC
Confidence 46788999999999999 999999 55888888875
No 289
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.80 E-value=0.37 Score=33.36 Aligned_cols=56 Identities=16% Similarity=0.085 Sum_probs=43.8
Q ss_pred HhhhhHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC
Q 030634 9 DRLLLSEHNRKTAEANYAKDPL---------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA 74 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~---------~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~ 74 (174)
=+.+.|.+|++.+.+.++.... ...++.++|.++...|++ ++|+..+++|+++-..
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~----------~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHY----------EEALQALEEAIRLARE 73 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHH
Confidence 3567888898888888775322 246778899999999999 9999999999988433
No 290
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.64 E-value=0.84 Score=34.99 Aligned_cols=70 Identities=17% Similarity=0.007 Sum_probs=61.8
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG 90 (174)
.....++.......--+.|+.++.-.--|.+++..|++ .+|+..|+...+-.|..+-+--.++.|+..+|
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w----------~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~ 92 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNY----------DEAARILRELLSSAGAPPYGKALLALCLNAKG 92 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCH----------HHHHHHHHhhhccCCCchHHHHHHHHHHHhcC
Confidence 34566676777777778999999999999999999999 99999999999999999988889999999988
No 291
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=92.63 E-value=0.51 Score=38.22 Aligned_cols=62 Identities=6% Similarity=-0.055 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 17 NRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 17 Al~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
|++.|.+|..+.|.+...++.+|.+....|+. -+|+-.|-+++-..--.+.|.-||...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~----------l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDD----------LDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-H----------HHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccch----------HHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999999999998887 899999999997766679999999999888
No 292
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.27 E-value=0.2 Score=26.47 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHH
Q 030634 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (174)
Q Consensus 77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~k 112 (174)
.++++||.++..+| ++++|...+++
T Consensus 2 ~a~~~la~~~~~~G-----------~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQG-----------DPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcC-----------CHHHHHHHHhC
Confidence 57889999999999 99999988763
No 293
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.79 E-value=8.1 Score=33.52 Aligned_cols=97 Identities=14% Similarity=0.165 Sum_probs=65.4
Q ss_pred hhhHHHHHH-----HHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh-------CCC----
Q 030634 11 LLLSEHNRK-----TAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-------DPA---- 74 (174)
Q Consensus 11 ~~~~~eAl~-----~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l-------dP~---- 74 (174)
+..|..+.. .....+..+|.+.+++..++.++..+|++ ..+.+.++.|+-+|++++-- ++.
T Consensus 14 q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~---~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~ 90 (360)
T PF04910_consen 14 QEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDH---AQANDLLERALFAFERAFHPSFSPFRSNLTSGNC 90 (360)
T ss_pred HHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHHHHHhhhhhcccccCcc
Confidence 335555554 24455678999999999999999999987 22334455666666554422 112
Q ss_pred --------CHH---HHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC-CH
Q 030634 75 --------KHY---TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT-NE 121 (174)
Q Consensus 75 --------~~~---a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~-~~ 121 (174)
|-. +.+.....+...| -+.-|+++.+-.+.+||. |+
T Consensus 91 rL~~~~~eNR~fflal~r~i~~L~~RG-----------~~rTAlE~~KlLlsLdp~~DP 138 (360)
T PF04910_consen 91 RLDYRRPENRQFFLALFRYIQSLGRRG-----------CWRTALEWCKLLLSLDPDEDP 138 (360)
T ss_pred ccCCccccchHHHHHHHHHHHHHHhcC-----------cHHHHHHHHHHHHhcCCCCCc
Confidence 222 3344455556666 899999999999999999 66
No 294
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=91.78 E-value=1 Score=37.65 Aligned_cols=68 Identities=16% Similarity=0.095 Sum_probs=60.3
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
-|=+-+..+.|++..++.+.++|.+|.-+.-.|.+|.++|-+ .-|+..++..++.-|+++.+-.....
T Consensus 190 ~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~----------~vAl~dl~~~~~~~P~~~~a~~ir~~ 257 (269)
T COG2912 190 ALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCY----------HVALEDLSYFVEHCPDDPIAEMIRAQ 257 (269)
T ss_pred HHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCc----------hhhHHHHHHHHHhCCCchHHHHHHHH
Confidence 455566889999999999999999999999999999999999 99999999999999999987654443
No 295
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=91.53 E-value=0.78 Score=39.11 Aligned_cols=57 Identities=30% Similarity=0.314 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHH
Q 030634 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (174)
Q Consensus 35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~k 112 (174)
+...+..+...|.+ .+|++.-++++.+||-+...+..|-.+|..+| +--.|+.+|.+
T Consensus 282 lgkva~~yle~g~~----------neAi~l~qr~ltldpL~e~~nk~lm~~la~~g-----------D~is~~khyer 338 (361)
T COG3947 282 LGKVARAYLEAGKP----------NEAIQLHQRALTLDPLSEQDNKGLMASLATLG-----------DEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHcCCh----------HHHHHHHHHHhhcChhhhHHHHHHHHHHHHhc-----------cchhhhhHHHH
Confidence 34455667777777 99999999999999999999999999999999 66666666665
No 296
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=91.48 E-value=2.6 Score=37.30 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=73.1
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhC
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSC 89 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~l 89 (174)
.+..+++-++....++..+|++..+|+.+..++...+.. .+..-+...++++++||.+..+|...=.+....
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~--------~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~ 158 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHS--------DWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA 158 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCc--------hHHHHHHHHHHHHhcCcccccchHHHHHHHHHH
Confidence 344678888999999999999999999999999876654 237889999999999999999986655555433
Q ss_pred CCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 90 GFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 90 G~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+- -....+=+++..+++.-|+.|-
T Consensus 159 ~~~-------~~~~~~El~ftt~~I~~nfSNY 183 (421)
T KOG0529|consen 159 ERS-------RNLEKEELEFTTKLINDNFSNY 183 (421)
T ss_pred hcc-------cccchhHHHHHHHHHhccchhh
Confidence 200 0134566777777777777665
No 297
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=91.47 E-value=8.8 Score=34.25 Aligned_cols=103 Identities=20% Similarity=0.085 Sum_probs=80.2
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchh---h----------------------------hh
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSD---S----------------------------KK 56 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~---~----------------------------~~ 56 (174)
..|+|..+.|+.+++.+..+.|.-+-++...=......|+++.... . ..
T Consensus 164 Aqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda 243 (531)
T COG3898 164 AQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA 243 (531)
T ss_pred HHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC
Confidence 4688899999999999999999988777666556666666643110 0 11
Q ss_pred hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 57 IINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 57 ~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
....|...-.+++++.|+...+-..-+.+|...| +..++-.+++.+.+.+|.-.
T Consensus 244 dp~~Ar~~A~~a~KL~pdlvPaav~AAralf~d~-----------~~rKg~~ilE~aWK~ePHP~ 297 (531)
T COG3898 244 DPASARDDALEANKLAPDLVPAAVVAARALFRDG-----------NLRKGSKILETAWKAEPHPD 297 (531)
T ss_pred ChHHHHHHHHHHhhcCCccchHHHHHHHHHHhcc-----------chhhhhhHHHHHHhcCCChH
Confidence 2466777778889999999998888899999988 99999999999999988654
No 298
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=90.65 E-value=1.9 Score=41.73 Aligned_cols=84 Identities=19% Similarity=0.163 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHH----------HHhCCCC----------HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634 56 KIINEAISKFEEA----------LVIDPAK----------HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (174)
Q Consensus 56 ~~~~eAi~~lekA----------l~ldP~~----------~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~ 115 (174)
+.++.|++.|+|+ |.-+|.. +..|--.|.-+...| +.+.|+.+|..|-.
T Consensus 872 ~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~G-----------emdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 872 RDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVG-----------EMDAALSFYSSAKD 940 (1416)
T ss_pred ccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhccc-----------chHHHHHHHHHhhh
Confidence 3459999999886 4446653 333444566666766 88999999988643
Q ss_pred hCCCCH------HHHHHHhcCC--CChHHHHHHHHHHHhcccc
Q 030634 116 EEPTNE------LYQKSLEVST--KAPELHMELHKHGINQQTL 150 (174)
Q Consensus 116 l~P~~~------~y~~Al~l~~--~~~~~~~~l~~~~~~~~~~ 150 (174)
.-.--. ...+|-++.. .+-.+-+.|+..|.++|-+
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v 983 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDV 983 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHH
Confidence 221110 2234444433 3334666777777777766
No 299
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=90.54 E-value=0.3 Score=42.04 Aligned_cols=61 Identities=13% Similarity=0.147 Sum_probs=51.0
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHH-HHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTR-WGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~-lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~ 81 (174)
.+.|.+--..|.+++..+|.+++.|.. -+.-+...+++ +-+...|.++|+.||++|..|+.
T Consensus 120 ~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani----------~s~Ra~f~~glR~N~~~p~iw~e 181 (435)
T COG5191 120 KKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANI----------ESSRAMFLKGLRMNSRSPRIWIE 181 (435)
T ss_pred HHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccH----------HHHHHHHHhhhccCCCCchHHHH
Confidence 346677778889999999999999987 44566667777 99999999999999999998854
No 300
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=90.49 E-value=3.3 Score=34.08 Aligned_cols=53 Identities=19% Similarity=0.206 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+.+||...+.-++-+|.+......|=..|...| ++++|..-++-+-+++|++.
T Consensus 17 L~dai~~a~~qVkakPtda~~RhflfqLlcvaG-----------dw~kAl~Ql~l~a~l~p~~t 69 (273)
T COG4455 17 LQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAG-----------DWEKALAQLNLAATLSPQDT 69 (273)
T ss_pred HHHHHHHHHHHHhcCCccccchhHHHHHHhhcc-----------hHHHHHHHHHHHhhcCcccc
Confidence 499999999999999999999988888999999 99999999999999999887
No 301
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.47 E-value=4.6 Score=33.84 Aligned_cols=94 Identities=15% Similarity=0.067 Sum_probs=52.6
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDAD------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTL 79 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~------a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~ 79 (174)
.--..|++|-..+.+|.+-..++.. ++-..|....++..+ .|+...+++|..+.-.+. .+-
T Consensus 42 RnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~kl----------sEvvdl~eKAs~lY~E~GspdtAA 111 (308)
T KOG1585|consen 42 RNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKL----------SEVVDLYEKASELYVECGSPDTAA 111 (308)
T ss_pred HhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHh----------HHHHHHHHHHHHHHHHhCCcchHH
Confidence 3344677777777777655444432 223333444444444 888888888877632221 122
Q ss_pred HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 80 ~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
..|+.+--.+. ..+.++|++.|++++.+=-++.
T Consensus 112 maleKAak~le---------nv~Pd~AlqlYqralavve~~d 144 (308)
T KOG1585|consen 112 MALEKAAKALE---------NVKPDDALQLYQRALAVVEEDD 144 (308)
T ss_pred HHHHHHHHHhh---------cCCHHHHHHHHHHHHHHHhccc
Confidence 33333322222 2378889999999887755554
No 302
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.32 E-value=0.5 Score=27.68 Aligned_cols=29 Identities=41% Similarity=0.547 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634 33 DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (174)
Q Consensus 33 ~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l 71 (174)
+++..||.+-+..++| ++|+.-|+++|++
T Consensus 2 dv~~~Lgeisle~e~f----------~qA~~D~~~aL~i 30 (38)
T PF10516_consen 2 DVYDLLGEISLENENF----------EQAIEDYEKALEI 30 (38)
T ss_pred cHHHHHHHHHHHhccH----------HHHHHHHHHHHHH
Confidence 5788899999999998 9999999999986
No 303
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=90.29 E-value=0.56 Score=27.48 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
+++..||.+-...+ +|++|+.-|+++|++.
T Consensus 2 dv~~~Lgeisle~e-----------~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENE-----------NFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHH
Confidence 46777888888866 9999999999998863
No 304
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.23 E-value=1.3 Score=33.61 Aligned_cols=59 Identities=12% Similarity=0.110 Sum_probs=50.5
Q ss_pred hHHHHHHHHHHHHh-hCCC-CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHH
Q 030634 13 LSEHNRKTAEANYA-KDPL-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81 (174)
Q Consensus 13 ~~~eAl~~~~~al~-~~P~-~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~ 81 (174)
.-.+.+..++..++ -+|. .-+..+.|+..+..+++| ++++...+..++.+|++..+.-.
T Consensus 50 dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY----------~~s~~yvd~ll~~e~~n~Qa~~L 110 (149)
T KOG3364|consen 50 DVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEY----------SKSLRYVDALLETEPNNRQALEL 110 (149)
T ss_pred HHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhH----------HHHHHHHHHHHhhCCCcHHHHHH
Confidence 45677888888886 5565 578999999999999999 99999999999999999997543
No 305
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=90.09 E-value=2.9 Score=39.21 Aligned_cols=92 Identities=16% Similarity=0.195 Sum_probs=73.0
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh--CCCCHHHHHH-HHHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI--DPAKHYTLWS-LGNA 85 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l--dP~~~~a~~~-LG~a 85 (174)
++.|=|+.....|.+.+++.--.|++-.|.|..+.+..-| ++|.+.|++.+.+ -|.-.++|.. |-..
T Consensus 488 Es~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yf----------eesFk~YErgI~LFk~p~v~diW~tYLtkf 557 (835)
T KOG2047|consen 488 ESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYF----------EESFKAYERGISLFKWPNVYDIWNTYLTKF 557 (835)
T ss_pred HHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHH----------HHHHHHHHcCCccCCCccHHHHHHHHHHHH
Confidence 4667788888999999999999999999999999887667 9999999999998 4566677653 3332
Q ss_pred HHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634 86 HTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 86 ~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~ 119 (174)
-...| -...+.|.+.|++||+.=|.
T Consensus 558 i~ryg---------g~klEraRdLFEqaL~~Cpp 582 (835)
T KOG2047|consen 558 IKRYG---------GTKLERARDLFEQALDGCPP 582 (835)
T ss_pred HHHhc---------CCCHHHHHHHHHHHHhcCCH
Confidence 23333 23789999999999998773
No 306
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.07 E-value=4.5 Score=31.29 Aligned_cols=52 Identities=19% Similarity=0.185 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+++...+...--+.|+.++.-..-|..+...| ++.+|+..++...+-.|..+
T Consensus 27 ~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~-----------~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 27 DDAEALLDALRVLRPEFPELDLFDGWLHIVRG-----------DWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHhC-----------CHHHHHHHHHHHhccCCCCh
Confidence 89999999999999999999999999999999 99999999999888888777
No 307
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=89.76 E-value=8.7 Score=36.21 Aligned_cols=92 Identities=13% Similarity=0.059 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCc
Q 030634 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLT 93 (174)
Q Consensus 14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~ 93 (174)
.++-.-+|++|++.-|.+..+|+..-..-...-+ ....+...++.--.+|++++..--+-|.+|......+..+|
T Consensus 42 ~k~~~~lYERal~~lp~sykiW~~YL~~R~~~vk--~~~~T~~~~~~vn~c~er~lv~mHkmpRIwl~Ylq~l~~Q~--- 116 (835)
T KOG2047|consen 42 DKQRNLLYERALKELPGSYKIWYDYLKARRAQVK--HLCPTDPAYESVNNCFERCLVFMHKMPRIWLDYLQFLIKQG--- 116 (835)
T ss_pred hHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHhh--ccCCCChHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHhcc---
Confidence 4455678999999999999999876644433322 22334556677788999999998899999999999999988
Q ss_pred cchhhhhcCHHHHHHHHHHHHHhCC
Q 030634 94 ADLSEAKGDFDKASECFQRAVDEEP 118 (174)
Q Consensus 94 ~~~~~a~~~~~~Ai~~~~kAl~l~P 118 (174)
+...-...|.+||.-=|
T Consensus 117 --------~iT~tR~tfdrALraLp 133 (835)
T KOG2047|consen 117 --------LITRTRRTFDRALRALP 133 (835)
T ss_pred --------hHHHHHHHHHHHHHhCc
Confidence 55555555555555444
No 308
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.12 E-value=12 Score=31.18 Aligned_cols=55 Identities=15% Similarity=0.177 Sum_probs=41.2
Q ss_pred hhHHHHHHHHHHHHHhCCCCHHH-------HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 56 KIINEAISKFEEALVIDPAKHYT-------LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 56 ~~~~eAi~~lekAl~ldP~~~~a-------~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+++.+||.+|+++..-.-+++-. ++.-|.|+..-+ +.-.+...+++-.+++|...
T Consensus 168 eqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~-----------D~v~a~~ALeky~~~dP~F~ 229 (288)
T KOG1586|consen 168 EQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKA-----------DEVNAQRALEKYQELDPAFT 229 (288)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcc-----------cHHHHHHHHHHHHhcCCccc
Confidence 55699999999998877666543 345677777645 66667777777778999887
No 309
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=88.52 E-value=4.7 Score=40.90 Aligned_cols=96 Identities=15% Similarity=0.212 Sum_probs=82.4
Q ss_pred hHHHHHHHHHHHHhhCCC--CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634 13 LSEHNRKTAEANYAKDPL--DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~--~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG 90 (174)
.-++|...+.+|+..-|. +.+....-+..-++.|+. +.+..+|+-.+.-+|+-.+.|.-+...=..+|
T Consensus 1579 e~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDa----------eRGRtlfEgll~ayPKRtDlW~VYid~eik~~ 1648 (1710)
T KOG1070|consen 1579 EAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDA----------ERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHG 1648 (1710)
T ss_pred HHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCc----------hhhHHHHHHHHhhCccchhHHHHHHHHHHccC
Confidence 446788899999999999 888999999999999998 99999999999999999999998888888888
Q ss_pred CCccchhhhhcCHHHHHHHHHHHHHhC--CCCH--HHHHHHhc
Q 030634 91 FLTADLSEAKGDFDKASECFQRAVDEE--PTNE--LYQKSLEV 129 (174)
Q Consensus 91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~--P~~~--~y~~Al~l 129 (174)
+.+.+...|+|++.+. |... .|++-|+.
T Consensus 1649 -----------~~~~vR~lfeRvi~l~l~~kkmKfffKkwLey 1680 (1710)
T KOG1070|consen 1649 -----------DIKYVRDLFERVIELKLSIKKMKFFFKKWLEY 1680 (1710)
T ss_pred -----------CHHHHHHHHHHHHhcCCChhHhHHHHHHHHHH
Confidence 9999999999998765 3333 56666654
No 310
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=88.51 E-value=2.8 Score=38.49 Aligned_cols=74 Identities=12% Similarity=0.207 Sum_probs=61.6
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhh
Q 030634 21 AEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAK 100 (174)
Q Consensus 21 ~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~ 100 (174)
.++-++.+|.|.++|+.|-.-+... -+ +++...||+.+...|..+.+|..-........
T Consensus 9 ~~~rie~nP~di~sw~~lire~qt~-~~----------~~~R~~YEq~~~~FP~s~r~W~~yi~~El~sk---------- 67 (656)
T KOG1914|consen 9 PRERIEENPYDIDSWSQLIREAQTQ-PI----------DKVRETYEQLVNVFPSSPRAWKLYIERELASK---------- 67 (656)
T ss_pred HHHHHhcCCccHHHHHHHHHHHccC-CH----------HHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh----------
Confidence 3778899999999999887655433 34 99999999999999999999988777766655
Q ss_pred cCHHHHHHHHHHHHHh
Q 030634 101 GDFDKASECFQRAVDE 116 (174)
Q Consensus 101 ~~~~~Ai~~~~kAl~l 116 (174)
+|+.-...|.++|..
T Consensus 68 -dfe~VEkLF~RCLvk 82 (656)
T KOG1914|consen 68 -DFESVEKLFSRCLVK 82 (656)
T ss_pred -hHHHHHHHHHHHHHH
Confidence 999999999998864
No 311
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=88.45 E-value=0.52 Score=24.81 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHH
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lek 67 (174)
|.+.+.+|.++...|++ ++|...+++
T Consensus 1 ~~a~~~la~~~~~~G~~----------~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDP----------DEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCH----------HHHHHHHhC
Confidence 35678999999999999 999988763
No 312
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=88.44 E-value=3.4 Score=40.01 Aligned_cols=66 Identities=23% Similarity=0.363 Sum_probs=50.8
Q ss_pred CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHH---------------------HHhCCCCHHHHHHHHHHHH
Q 030634 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEA---------------------LVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 29 P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekA---------------------l~ldP~~~~a~~~LG~a~~ 87 (174)
-.++..|.+||.-+-..|+. +.|+..|..| |.....|-.|-|.||..|.
T Consensus 909 ~~d~~L~~WWgqYlES~Gem----------daAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YE 978 (1416)
T KOG3617|consen 909 KRDESLYSWWGQYLESVGEM----------DAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYE 978 (1416)
T ss_pred ccchHHHHHHHHHHhcccch----------HHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhh
Confidence 45667888899888777777 7777777665 3345667788899999999
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVD 115 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~ 115 (174)
..| ++.+|+..|.+|-.
T Consensus 979 n~g-----------~v~~Av~FfTrAqa 995 (1416)
T KOG3617|consen 979 NDG-----------DVVKAVKFFTRAQA 995 (1416)
T ss_pred hhH-----------HHHHHHHHHHHHHH
Confidence 988 99999998877643
No 313
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=88.26 E-value=1.4 Score=23.19 Aligned_cols=27 Identities=22% Similarity=0.146 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 58 INEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
++.|...|++++...|.++..|.....
T Consensus 3 ~~~~r~i~e~~l~~~~~~~~~W~~y~~ 29 (33)
T smart00386 3 IERARKIYERALEKFPKSVELWLKYAE 29 (33)
T ss_pred HHHHHHHHHHHHHHCCCChHHHHHHHH
Confidence 489999999999999999999987654
No 314
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=87.24 E-value=0.52 Score=40.87 Aligned_cols=76 Identities=20% Similarity=0.190 Sum_probs=62.7
Q ss_pred HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (174)
Q Consensus 34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA 113 (174)
...+++.+-+.++.+ ..|+..-..+++.++....++|..|..+..+. ++++|++.++.+
T Consensus 277 ~~~n~~~~~lk~~~~----------~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~-----------~~~~a~~~~~~a 335 (372)
T KOG0546|consen 277 IRRNLAAVGLKVKGR----------GGARFRTNEALRDERSKTKAHYRRGQAYKLLK-----------NYDEALEDLKKA 335 (372)
T ss_pred cccchHHhcccccCC----------CcceeccccccccChhhCcHHHHHHhHHHhhh-----------chhhhHHHHHHh
Confidence 345566666666666 77777777778899999999999999999988 999999999999
Q ss_pred HHhCCCCHHHHHHHhcC
Q 030634 114 VDEEPTNELYQKSLEVS 130 (174)
Q Consensus 114 l~l~P~~~~y~~Al~l~ 130 (174)
...+|++....+++...
T Consensus 336 ~~~~p~d~~i~~~~~~~ 352 (372)
T KOG0546|consen 336 KQKAPNDKAIEEELENV 352 (372)
T ss_pred hccCcchHHHHHHHHHh
Confidence 99999999777766443
No 315
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=87.18 E-value=15 Score=29.97 Aligned_cols=92 Identities=16% Similarity=0.039 Sum_probs=64.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHhCCCC
Q 030634 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-HYTLWSLGNAHTSCGFL 92 (174)
Q Consensus 14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~-~~a~~~LG~a~~~lG~~ 92 (174)
..+|++.++ ...+..++.+.+++|.++..-.- ....+.+|...|++|.+..-.. ..+.+.+|.+|..-...
T Consensus 93 ~~~A~~~~~--~~a~~g~~~a~~~lg~~~~~G~g------v~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~ 164 (292)
T COG0790 93 KTKAADWYR--CAAADGLAEALFNLGLMYANGRG------VPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQA 164 (292)
T ss_pred HHHHHHHHH--HHhhcccHHHHHhHHHHHhcCCC------cccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhh
Confidence 677888888 55778899999999999876321 1234599999999999874444 46689999998773200
Q ss_pred ccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 93 TADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 93 ~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
.-...+..+|+..|+++-...
T Consensus 165 ----~~~~~~~~~A~~~~~~aa~~~ 185 (292)
T COG0790 165 ----LAVAYDDKKALYLYRKAAELG 185 (292)
T ss_pred ----hcccHHHHhHHHHHHHHHHhc
Confidence 000113457888888877665
No 316
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=86.88 E-value=6.3 Score=30.57 Aligned_cols=87 Identities=14% Similarity=0.021 Sum_probs=59.5
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCC---CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhC--CCCHHHH--
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPL---DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVID--PAKHYTL-- 79 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~---~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ld--P~~~~a~-- 79 (174)
-|-+.|.+++|++.|.++.+.... -.+.+.++-.+.+..+++ ..+.....++-.+- +.+.+..
T Consensus 45 ~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~----------~~v~~~i~ka~~~~~~~~d~~~~nr 114 (177)
T PF10602_consen 45 HYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDW----------SHVEKYIEKAESLIEKGGDWERRNR 114 (177)
T ss_pred HHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHhccchHHHHHH
Confidence 477889999999999998876433 255667777777888887 67777777665542 2333322
Q ss_pred --HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634 80 --WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (174)
Q Consensus 80 --~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl 114 (174)
..-|..+...+ +|.+|...|-.++
T Consensus 115 lk~~~gL~~l~~r-----------~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 115 LKVYEGLANLAQR-----------DFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHhc-----------hHHHHHHHHHccC
Confidence 23344555555 9999999887764
No 317
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=86.41 E-value=8.2 Score=32.49 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=63.2
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
-+...++++.+....++.+..+|.+-.+|..+=.++...|+. ..||..|++.-+. .-
T Consensus 162 ~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~----------~~ai~~y~~l~~~-------------~~ 218 (280)
T COG3629 162 ALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQ----------SAAIRAYRQLKKT-------------LA 218 (280)
T ss_pred HHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCc----------hHHHHHHHHHHHH-------------hh
Confidence 355667899999999999999999999999999999999998 9999999887665 12
Q ss_pred HhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 87 ~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
..+| .+--.++...|.+++...|.+.
T Consensus 219 edlg---------i~P~~~~~~~y~~~~~~~~~~~ 244 (280)
T COG3629 219 EELG---------IDPAPELRALYEEILRQDPLDN 244 (280)
T ss_pred hhcC---------CCccHHHHHHHHHHhccccccc
Confidence 2333 2234566666677666666544
No 318
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.22 E-value=8.6 Score=35.11 Aligned_cols=83 Identities=17% Similarity=0.140 Sum_probs=59.3
Q ss_pred hHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHH-hCCCCccchhhhhcCHHHHHHHHHHHHHhC---CCCH--------
Q 030634 57 IINEAISKFEEALVIDPAKH---YTLWSLGNAHT-SCGFLTADLSEAKGDFDKASECFQRAVDEE---PTNE-------- 121 (174)
Q Consensus 57 ~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~-~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~---P~~~-------- 121 (174)
.+.++|+|++..+...|.+- ..+..||.+++ ... +++-|..++++|..+. |+..
T Consensus 24 kIkk~IkClqA~~~~~is~~veart~LqLg~lL~~yT~-----------N~elAksHLekA~~i~~~ip~fydvKf~a~S 92 (629)
T KOG2300|consen 24 KIKKCIKCLQAIFQFQISFLVEARTHLQLGALLLRYTK-----------NVELAKSHLEKAWLISKSIPSFYDVKFQAAS 92 (629)
T ss_pred hHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHHcccccHHhhhhHHHH
Confidence 34999999999998877753 45677887754 333 8899999999998764 3321
Q ss_pred ------------------HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 122 ------------------LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 122 ------------------~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
..|+|+++....|--+.++.-.+...+..
T Consensus 93 lLa~lh~~~~~s~~~~KalLrkaielsq~~p~wsckllfQLaql~~i 139 (629)
T KOG2300|consen 93 LLAHLHHQLAQSFPPAKALLRKAIELSQSVPYWSCKLLFQLAQLHII 139 (629)
T ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhcCCchhhHHHHHHHHHHHhh
Confidence 56888888888887666666666555554
No 319
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=85.65 E-value=2 Score=22.50 Aligned_cols=30 Identities=23% Similarity=0.142 Sum_probs=25.7
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEA 41 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~ 41 (174)
+.++.+...|++++...|.++..|......
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 357889999999999999999999887654
No 320
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=85.30 E-value=2.1 Score=37.69 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=45.1
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccc-h-hhhhhHHHHHHHHHHHHHh
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESV-S-DSKKIINEAISKFEEALVI 71 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~-~-~~~~~~~eAi~~lekAl~l 71 (174)
.+..+..|++++++|.. -.+|+.|..+|.+++.+|+.... + +..+.|++|..++.+|-..
T Consensus 330 a~~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~a 391 (404)
T PF12753_consen 330 AQELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANKA 391 (404)
T ss_dssp HHHHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhhc
Confidence 34578889999999865 77899999999999999995432 2 2456789999999988653
No 321
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=84.99 E-value=5.7 Score=31.92 Aligned_cols=55 Identities=18% Similarity=0.187 Sum_probs=46.4
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPL------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~------~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l 71 (174)
+...+..+..|++.|.++++.... .....+.+|.+...+|++ ++|+..|.+++..
T Consensus 134 ~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~----------~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 134 EENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNY----------DEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHcC
Confidence 445567889999999999986533 257889999999999999 9999999999874
No 322
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.97 E-value=18 Score=29.01 Aligned_cols=71 Identities=17% Similarity=0.161 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHH
Q 030634 59 NEAISKFEEALVI-DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELH 137 (174)
Q Consensus 59 ~eAi~~lekAl~l-dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~ 137 (174)
++|...|-++-.. .=++++..+.||..|.+. +.++|+..+-++|++.+.+. .-+|+.+
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~kr------------D~~Kt~~ll~~~L~l~~~~~---------~~n~eil 181 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYTKR------------DPEKTIQLLLRALELSNPDD---------NFNPEIL 181 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHcc------------CHHHHHHHHHHHHHhcCCCC---------CCCHHHH
Confidence 7788777665432 225788899999988764 89999999999999887653 3368889
Q ss_pred HHHHHHHHhcccc
Q 030634 138 MELHKHGINQQTL 150 (174)
Q Consensus 138 ~~l~~~~~~~~~~ 150 (174)
..|+.+++.++..
T Consensus 182 ~sLas~~~~~~~~ 194 (203)
T PF11207_consen 182 KSLASIYQKLKNY 194 (203)
T ss_pred HHHHHHHHHhcch
Confidence 9999999888764
No 323
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=84.60 E-value=13 Score=26.92 Aligned_cols=112 Identities=19% Similarity=0.161 Sum_probs=65.6
Q ss_pred HHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHH-HHHhCCCCHH-------HH
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE-ALVIDPAKHY-------TL 79 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lek-Al~ldP~~~~-------a~ 79 (174)
|...+.....+..++..+..++.++..+..+..++...++ .+.+..++. .-..|++..- -|
T Consensus 17 ~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~~~-----------~~ll~~l~~~~~~yd~~~~~~~c~~~~l~ 85 (140)
T smart00299 17 FEKRNLLEELIPYLESALKLNSENPALQTKLIELYAKYDP-----------QKEIERLDNKSNHYDIEKVGKLCEKAKLY 85 (140)
T ss_pred HHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHHHCH-----------HHHHHHHHhccccCCHHHHHHHHHHcCcH
Confidence 4445678899999999999999999999999999987644 455555552 1111111100 01
Q ss_pred HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcC--CCChHHHHHHHHHHHhc
Q 030634 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVS--TKAPELHMELHKHGINQ 147 (174)
Q Consensus 80 ~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~--~~~~~~~~~l~~~~~~~ 147 (174)
-....+|...| ++++|+..+-+- +++ +..|++.. ...++.|..++...+..
T Consensus 86 ~~~~~l~~k~~-----------~~~~Al~~~l~~----~~d--~~~a~~~~~~~~~~~lw~~~~~~~l~~ 138 (140)
T smart00299 86 EEAVELYKKDG-----------NFKDAIVTLIEH----LGN--YEKAIEYFVKQNNPELWAEVLKALLDK 138 (140)
T ss_pred HHHHHHHHhhc-----------CHHHHHHHHHHc----ccC--HHHHHHHHHhCCCHHHHHHHHHHHHcc
Confidence 12222333444 777777765542 222 22333222 34788888888766543
No 324
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=84.57 E-value=5.9 Score=29.60 Aligned_cols=54 Identities=17% Similarity=0.085 Sum_probs=40.2
Q ss_pred hHHhhhhHHHHHHHHHHHHh-------hCCCCHH----HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYA-------KDPLDAD----NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV 70 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~-------~~P~~~~----a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ 70 (174)
-+-.+|+|++++..+.+++. ++.+.-. +.++.|.++..+|+. ++|+..|+.+-+
T Consensus 64 A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~----------~eA~~~fr~agE 128 (144)
T PF12968_consen 64 ALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRK----------EEALKEFRMAGE 128 (144)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCCh----------HHHHHHHHHHHH
Confidence 45678999999999888886 4544433 446778888888888 999999998865
No 325
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.28 E-value=14 Score=39.31 Aligned_cols=142 Identities=11% Similarity=-0.031 Sum_probs=96.5
Q ss_pred CCChhhHHhhhhHHHHHHHHHHHHh---hC----CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC
Q 030634 2 EFSQSDFDRLLLSEHNRKTAEANYA---KD----PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA 74 (174)
Q Consensus 2 ~~~~~~~~~~~~~~eAl~~~~~al~---~~----P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~ 74 (174)
+++|.+|. ..|=+-..++++. .+ ..-.++|...|.+-...|++ +.|-..+-+|.+..
T Consensus 1637 ~~tq~s~~----~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~----------q~A~nall~A~e~r-- 1700 (2382)
T KOG0890|consen 1637 ERTQPSFR----IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL----------QRAQNALLNAKESR-- 1700 (2382)
T ss_pred HHhchhHH----HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH----------HHHHHHHHhhhhcc--
Confidence 44555555 4444444444433 23 33567888888888778887 88888888888877
Q ss_pred CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC-H--------------------------------
Q 030634 75 KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN-E-------------------------------- 121 (174)
Q Consensus 75 ~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~-~-------------------------------- 121 (174)
-+.++...+..+-..| +-..|+..+++.++++-.+ .
T Consensus 1701 ~~~i~~E~AK~lW~~g-----------d~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~ 1769 (2382)
T KOG0890|consen 1701 LPEIVLERAKLLWQTG-----------DELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNF 1769 (2382)
T ss_pred cchHHHHHHHHHHhhc-----------cHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcch
Confidence 6778888888888888 8889999999988765333 1
Q ss_pred -------HHHHHHhcCCCChHHHHHHHHHHHh----ccccCCC--Cchhh---HHHHHHHHHhhh
Q 030634 122 -------LYQKSLEVSTKAPELHMELHKHGIN----QQTLGGG--SSASS---AQVNFCICVHQM 170 (174)
Q Consensus 122 -------~y~~Al~l~~~~~~~~~~l~~~~~~----~~~~~~~--~~~~~---~~~~~~~~~~~~ 170 (174)
.|..+.++.|+-..-|+.+|.-+-. +..-+-| -+.++ +.|+|+..+|-+
T Consensus 1770 ~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy~kll~~~~~~~~E~~g~~~~~l~~~~~~~~sl~yg 1834 (2382)
T KOG0890|consen 1770 ESKDILKYYHDAKAILPEWEDKHYHLGKYYDKLLEDYKSNKMEKSGRVLSLLKAIYFFGRALYYG 1834 (2382)
T ss_pred hHHHHHHHHHHHHHHcccccCceeeHHHHHHHHhhhhhcccccccccHHHHHHHHHHHHHHHHhc
Confidence 7888999999888877777722222 2111222 23444 688889888865
No 326
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.07 E-value=15 Score=30.36 Aligned_cols=101 Identities=18% Similarity=0.061 Sum_probs=61.4
Q ss_pred hhhhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCcccchhhhh-hHHHHHHHHHHHHHh-------CCCCH----
Q 030634 10 RLLLSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKK-IINEAISKFEEALVI-------DPAKH---- 76 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~-P~~~~a~~~lg~~l~~~g~~~~~~~~~~-~~~eAi~~lekAl~l-------dP~~~---- 76 (174)
++|+++-|.-.+.++-... ..+|+....++.+++..|.- .-..+ .+++|+.-+++|.++ +...+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~---l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e 81 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKS---LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE 81 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHH---HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence 4677888888888887765 55666655666655554442 11122 447888877777766 22222
Q ss_pred ---HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 77 ---YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 77 ---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.++..|+.+|...+ .....++|....+.+-..-|+.+
T Consensus 82 lr~~iL~~La~~~l~~~--------~~~~~~ka~~~l~~l~~e~~~~~ 121 (278)
T PF08631_consen 82 LRLSILRLLANAYLEWD--------TYESVEKALNALRLLESEYGNKP 121 (278)
T ss_pred HHHHHHHHHHHHHHcCC--------ChHHHHHHHHHHHHHHHhCCCCc
Confidence 24567788887766 11245667776666666667655
No 327
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=84.04 E-value=6.9 Score=30.33 Aligned_cols=55 Identities=22% Similarity=0.197 Sum_probs=47.4
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 55 ~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
....+..++..++.++..| ++..+.+++.++...| +.++|....+++..+-|.+.
T Consensus 124 ~~~l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G-----------~~~eA~~~~~~~~~lyP~~~ 178 (193)
T PF11846_consen 124 PEMLEAYIEWAERLLRRRP-DPNVYQRYALALALLG-----------DPEEARQWLARARRLYPADE 178 (193)
T ss_pred HHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHhCCcHH
Confidence 4455777888889998888 7888899999999999 99999999999999999443
No 328
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.86 E-value=9.5 Score=31.99 Aligned_cols=95 Identities=15% Similarity=0.107 Sum_probs=52.2
Q ss_pred hhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhh---------hHHHHHHHHHHHHHhCCCCH
Q 030634 6 SDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKK---------IINEAISKFEEALVIDPAKH 76 (174)
Q Consensus 6 ~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~---------~~~eAi~~lekAl~ldP~~~ 76 (174)
|-|+--..+++|.-.+++. +.-|.-.+.+..-...|.+.|..+.+..+.+ ..++|+..|++++.+--.+.
T Consensus 66 slfhAAKayEqaamLake~-~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~d 144 (308)
T KOG1585|consen 66 SLFHAAKAYEQAAMLAKEL-SKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDD 144 (308)
T ss_pred cHHHHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccc
Confidence 3344444455544333332 2334444444455556666666655443321 25899999999887744443
Q ss_pred HH------HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHH
Q 030634 77 YT------LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (174)
Q Consensus 77 ~a------~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~k 112 (174)
.. +-..+++|..+. .|++|...+.|
T Consensus 145 r~~ma~el~gk~sr~lVrl~-----------kf~Eaa~a~lK 175 (308)
T KOG1585|consen 145 RDQMAFELYGKCSRVLVRLE-----------KFTEAATAFLK 175 (308)
T ss_pred hHHHHHHHHHHhhhHhhhhH-----------HhhHHHHHHHH
Confidence 32 234556666665 67776666665
No 329
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=83.33 E-value=1.4 Score=40.51 Aligned_cols=54 Identities=20% Similarity=0.110 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH
Q 030634 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY 77 (174)
Q Consensus 14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~ 77 (174)
--.|++.+-.|++++|..-.+|++++.++.+++++ .+|+.+...+....|.+..
T Consensus 427 ~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~----------~eal~~~~alq~~~Ptd~a 480 (758)
T KOG1310|consen 427 SYLALRDCHVALRLNPSIQKAHFRLARALNELTRY----------LEALSCHWALQMSFPTDVA 480 (758)
T ss_pred HHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhH----------HHhhhhHHHHhhcCchhhh
Confidence 34688899999999999999999999999999999 9999998888888886554
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.89 E-value=12 Score=34.21 Aligned_cols=90 Identities=13% Similarity=0.064 Sum_probs=60.1
Q ss_pred hHHHHHHHHHHHHh-----hCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 030634 13 LSEHNRKTAEANYA-----KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 13 ~~~eAl~~~~~al~-----~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~ 87 (174)
..+.|+..++.+.+ ..-.++.+.+.+|.+|....-.... ..+.|+..|.++-++ .++++.+.+|.++.
T Consensus 264 d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~-----d~~~A~~~~~~aA~~--g~~~a~~~lg~~~~ 336 (552)
T KOG1550|consen 264 DLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKI-----DYEKALKLYTKAAEL--GNPDAQYLLGVLYE 336 (552)
T ss_pred cHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccc-----cHHHHHHHHHHHHhc--CCchHHHHHHHHHH
Confidence 45666666666655 1122677889999999875432111 348899999998876 45667789999887
Q ss_pred hCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 88 ~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
... ...++..|.++|..|.+.-
T Consensus 337 ~g~--------~~~d~~~A~~yy~~Aa~~G 358 (552)
T KOG1550|consen 337 TGT--------KERDYRRAFEYYSLAAKAG 358 (552)
T ss_pred cCC--------ccccHHHHHHHHHHHHHcC
Confidence 632 1136778888888877543
No 331
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=82.41 E-value=27 Score=30.69 Aligned_cols=27 Identities=15% Similarity=-0.041 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 030634 14 SEHNRKTAEANYAKDPLDADNLTRWGE 40 (174)
Q Consensus 14 ~~eAl~~~~~al~~~P~~~~a~~~lg~ 40 (174)
-.+-++.+..|++++|..+.++..++.
T Consensus 200 p~~RI~~A~~ALeIN~eCA~AyvLLAE 226 (556)
T KOG3807|consen 200 PPARIKAAYQALEINNECATAYVLLAE 226 (556)
T ss_pred cHHHHHHHHHHHhcCchhhhHHHhhhh
Confidence 345577888999999999998888775
No 332
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=82.23 E-value=10 Score=34.07 Aligned_cols=59 Identities=10% Similarity=0.098 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634 34 NLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (174)
Q Consensus 34 a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA 113 (174)
+-..+..||+.+++. +-|+.+-.+.|-++|..+.-|..-+.|+..+. +|.+|..-+--|
T Consensus 230 Ietklv~CYL~~rkp----------dlALnh~hrsI~lnP~~frnHLrqAavfR~Le-----------Ry~eAarSamia 288 (569)
T PF15015_consen 230 IETKLVTCYLRMRKP----------DLALNHSHRSINLNPSYFRNHLRQAAVFRRLE-----------RYSEAARSAMIA 288 (569)
T ss_pred HHHHHHHhhhhcCCC----------chHHHHHhhhhhcCcchhhHHHHHHHHHHHHH-----------HHHHHHHHHHHH
Confidence 456788899999999 99999999999999999999999999998876 787776644433
No 333
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=82.09 E-value=10 Score=32.92 Aligned_cols=103 Identities=17% Similarity=-0.026 Sum_probs=64.2
Q ss_pred HhhhhHHHHHHHHHHHHhhCCC-CHHH-HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC-----CHHHHHH
Q 030634 9 DRLLLSEHNRKTAEANYAKDPL-DADN-LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA-----KHYTLWS 81 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~-~~~a-~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~-----~~~a~~~ 81 (174)
.|.|-+.-|++.++-.+.+||. ||-. ++.+-..-+..+++ +--+..++........ -|..-|.
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y----------~~Li~~~~~~~~~~~~~~~~~lPn~a~S 183 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQY----------QWLIDFSESPLAKCYRNWLSLLPNFAFS 183 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCH----------HHHHHHHHhHhhhhhhhhhhhCccHHHH
Confidence 4667899999999999999999 8753 34444444556666 4444444443332111 2355677
Q ss_pred HHHHHHhCCCC----ccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 82 LGNAHTSCGFL----TADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 82 LG~a~~~lG~~----~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
++.++..++.- ........++.++|-..+++|+..-|.-.
T Consensus 184 ~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~vl 227 (360)
T PF04910_consen 184 IALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPWVL 227 (360)
T ss_pred HHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHHHH
Confidence 78888887711 00111112234889999999988888644
No 334
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=81.79 E-value=5 Score=30.30 Aligned_cols=51 Identities=18% Similarity=0.179 Sum_probs=41.6
Q ss_pred CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 30 ~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG 90 (174)
..++.....+...+..|++ .-|.++...++..||+|..+....+.+|..+|
T Consensus 68 GG~d~vl~~A~~~~~~gd~----------~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg 118 (141)
T PF14863_consen 68 GGADKVLERAQAALAAGDY----------QWAAELLDHLVFADPDNEEARQLKADALEQLG 118 (141)
T ss_dssp TCHHHHHHHHHHHHHCT-H----------HHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 5566677777777777777 99999999999999999999999999999887
No 335
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=81.65 E-value=4.9 Score=36.27 Aligned_cols=61 Identities=18% Similarity=0.137 Sum_probs=48.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH----HHHHHHhcC
Q 030634 55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----LYQKSLEVS 130 (174)
Q Consensus 55 ~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~----~y~~Al~l~ 130 (174)
.|++.++.-.-.-..+++| ++.++-.+|.+++... +|++|..++.+ +-|++. .-.||+.++
T Consensus 475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k-----------~Y~eA~~~l~~---LP~n~~~~dskvqKAl~lC 539 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENK-----------RYQEAWEYLQK---LPPNERMRDSKVQKALALC 539 (549)
T ss_pred cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHh-----------hHHHHHHHHHh---CCCchhhHHHHHHHHHHHH
Confidence 3556888888888899999 9999999999999976 99999999886 455444 445666554
No 336
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=81.50 E-value=5.4 Score=34.24 Aligned_cols=47 Identities=21% Similarity=0.132 Sum_probs=42.5
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHH
Q 030634 55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (174)
Q Consensus 55 ~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~k 112 (174)
.+.+-+|+.++|.++..+|.|+.....|-.+|..+| -.+.|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG-----------~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLG-----------AGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHh
Confidence 455689999999999999999999999999999999 88889888864
No 337
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=81.38 E-value=3.1 Score=25.10 Aligned_cols=26 Identities=19% Similarity=0.256 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH
Q 030634 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALV 70 (174)
Q Consensus 35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ 70 (174)
.+.++.+|+.+|+. +.|...+++++.
T Consensus 2 kLdLA~ayie~Gd~----------e~Ar~lL~evl~ 27 (44)
T TIGR03504 2 KLDLARAYIEMGDL----------EGARELLEEVIE 27 (44)
T ss_pred chHHHHHHHHcCCh----------HHHHHHHHHHHH
Confidence 46799999999999 999999999995
No 338
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=81.06 E-value=6 Score=25.55 Aligned_cols=14 Identities=29% Similarity=0.418 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHhC
Q 030634 59 NEAISKFEEALVID 72 (174)
Q Consensus 59 ~eAi~~lekAl~ld 72 (174)
+.|+....+|++.|
T Consensus 3 ~~A~~~~~~Av~~D 16 (69)
T PF04212_consen 3 DKAIELIKKAVEAD 16 (69)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 66777777766643
No 339
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.31 E-value=13 Score=34.19 Aligned_cols=110 Identities=14% Similarity=0.037 Sum_probs=65.9
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHH
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA----KHYTLWSLGNAHT 87 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~----~~~a~~~LG~a~~ 87 (174)
|....|-+....+++..|.+|.-....+.+...+|.|+..+...+..+.++..-.+++++--. -......+..+-.
T Consensus 303 gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 303 GDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEM 382 (831)
T ss_pred cCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHH
Confidence 345566677778888999999999999999999999955443333333333322222222110 0111111222222
Q ss_pred hCC-C--------CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 88 SCG-F--------LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 88 ~lG-~--------~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+| + ..+..-.+.+.+++|..++++.+.++|.-.
T Consensus 383 ~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~ 425 (831)
T PRK15180 383 MLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQ 425 (831)
T ss_pred HhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhc
Confidence 233 1 113344567789999999999999998654
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=80.29 E-value=6.8 Score=23.57 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=26.1
Q ss_pred HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 79 ~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.++|+.+|..+| +++.|.+.+++.++ .++.+
T Consensus 2 kLdLA~ayie~G-----------d~e~Ar~lL~evl~-~~~~~ 32 (44)
T TIGR03504 2 KLDLARAYIEMG-----------DLEGARELLEEVIE-EGDEA 32 (44)
T ss_pred chHHHHHHHHcC-----------ChHHHHHHHHHHHH-cCCHH
Confidence 368999999999 99999999999994 55444
No 341
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=79.94 E-value=17 Score=33.66 Aligned_cols=85 Identities=8% Similarity=0.066 Sum_probs=59.6
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
.+....+++....+.-+.-....+......+..+-..++. +.|-.+|++.+..+|+ ++++..+.-+..
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 86 (578)
T PRK15490 19 KQEKKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVNET----------ERAYALYETLIAQNND--EARYEYARRLYN 86 (578)
T ss_pred HHHhhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhhhh----------HhHHHHHHHHHHhCCc--chHHHHHHHHHh
Confidence 3444555555555555444455566666667777777776 9999999999999999 677788888888
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~ 119 (174)
.| -...|...++ ++.|+
T Consensus 87 ~~-----------~~~~~~~~~~---~~~~~ 103 (578)
T PRK15490 87 TG-----------LAKDAQLILK---KVSNG 103 (578)
T ss_pred hh-----------hhhHHHHHHH---HhCcc
Confidence 88 7777777666 44554
No 342
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=79.34 E-value=3.3 Score=33.85 Aligned_cols=99 Identities=10% Similarity=-0.055 Sum_probs=53.9
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHH------------HHHHHHHHHhcCcccchhhhhhHHHH-HHHHHHHHH--hCCCCH
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNL------------TRWGEALLELSQFESVSDSKKIINEA-ISKFEEALV--IDPAKH 76 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~------------~~lg~~l~~~g~~~~~~~~~~~~~eA-i~~lekAl~--ldP~~~ 76 (174)
|.|+.|++.+..|++.+-.-|+-+ ..++......|+.- +-. ...+..... --|+..
T Consensus 97 Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~---------e~~~~~~~~~l~~~~dmpd~v 167 (230)
T PHA02537 97 GDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESV---------EPYFLRVFLDLTTEWDMPDEV 167 (230)
T ss_pred cCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCC---------ChHHHHHHHHHHhcCCCChHH
Confidence 679999999999999875444433 23333333344421 111 111222211 134444
Q ss_pred HH--HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 77 YT--LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 77 ~a--~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.+ |-.+|..+..-. .+......++...|+.++++|+++||+..
T Consensus 168 rAKl~K~~G~~llr~~--~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 168 RAKLYKAAGYLLLRNE--KGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHHHhhcc--cCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 44 345666653210 00111223478999999999999999865
No 343
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=78.91 E-value=25 Score=28.97 Aligned_cols=95 Identities=13% Similarity=-0.042 Sum_probs=55.9
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhh--hhHHHHH----HHHHHHHHhCCCCHHHHHHHH
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSK--KIINEAI----SKFEEALVIDPAKHYTLWSLG 83 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~--~~~~eAi----~~lekAl~ldP~~~~a~~~LG 83 (174)
|....++|++.. +.-.-.-.+|+.+..+|..+.+.|++..+..+. +.-.++. -.+...-+-+|...+.+...+
T Consensus 69 r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~Ra 147 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARA 147 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHH
T ss_pred HHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHH
Confidence 445556666666 322233358999999999999988874433221 1112222 223444567888999888888
Q ss_pred HH-HHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 84 NA-HTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 84 ~a-~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
.. |..+| +...|...+..-++.
T Consensus 148 VL~yL~l~-----------n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLG-----------NLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTT-----------BHHHHHHHHHHHHHH
T ss_pred HHHHHHhc-----------CHHHHHHHHHHHHHH
Confidence 76 45556 888888876666655
No 344
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=78.68 E-value=20 Score=28.89 Aligned_cols=98 Identities=19% Similarity=0.122 Sum_probs=63.9
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~ 92 (174)
.|++|.+.+....+ +-..+...+.+|.-++. |+- ...+....|+..++.+-. -+++.+-.++|.++..-...
T Consensus 50 nF~~A~kv~K~nCd-en~y~kSCyKyG~y~~~-GKg----G~~~~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~ 121 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCD-ENSYPKSCYKYGMYMLA-GKG----GDDASLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKD 121 (248)
T ss_pred HHHHHHHHHHhccc-ccCCcHHHHHhhhhhhc-ccC----CCccCHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCC
Confidence 34444444433332 23467888888865543 332 123445899999998775 77889999999887653311
Q ss_pred c-cchhhhhcCHHHHHHHHHHHHHhCCCCHHH
Q 030634 93 T-ADLSEAKGDFDKASECFQRAVDEEPTNELY 123 (174)
Q Consensus 93 ~-~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y 123 (174)
+ .+| +.++|.+++.+|-+++-..++|
T Consensus 122 r~~dp-----d~~Ka~~y~traCdl~~~~aCf 148 (248)
T KOG4014|consen 122 RKADP-----DSEKAERYMTRACDLEDGEACF 148 (248)
T ss_pred ccCCC-----CcHHHHHHHHHhccCCCchHHH
Confidence 1 222 6899999999999998777643
No 345
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=78.67 E-value=3.5 Score=27.66 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHhCCC
Q 030634 58 INEAISKFEEALVIDPA 74 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP~ 74 (174)
+.+|+..+.+|++.|-.
T Consensus 3 l~~A~~l~~~Ave~d~~ 19 (75)
T cd02677 3 LEQAAELIRLALEKEEE 19 (75)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37888888888776543
No 346
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=78.60 E-value=20 Score=33.92 Aligned_cols=52 Identities=15% Similarity=0.085 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHhCCCCH------HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 59 NEAISKFEEALVIDPAKH------YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~------~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
..+++.|+..++--|.|- ....+|..||..+. +.++|.++++.|=+.+|.+.
T Consensus 371 ~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~-----------QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 371 VVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLE-----------QLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHH-----------HHHHHHHHHHHHHhhccccH
Confidence 999999999998877654 35567888888876 99999999999999999998
No 347
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=78.43 E-value=9.7 Score=25.68 Aligned_cols=49 Identities=10% Similarity=-0.066 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 030634 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~ 86 (174)
+...|.-+-..|++ .++...+++||+.+.+++...|+++.-......+.
T Consensus 9 ~a~~AVe~D~~gr~---~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~ 57 (75)
T cd02682 9 YAINAVKAEKEGNA---EDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMIN 57 (75)
T ss_pred HHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 33344444444554 12233347788888888888999988655444443
No 348
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.27 E-value=23 Score=27.18 Aligned_cols=52 Identities=13% Similarity=0.145 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+++...+...--+-|+.++....-|.++...| ++.+|+..++...+-.|..+
T Consensus 27 ~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg-----------~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 27 YDAQAMLDALRVLRPNLKELDMFDGWLLIARG-----------NYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HHHHHHHHHHHHhCCCccccchhHHHHHHHcC-----------CHHHHHHHHHhhhccCCCch
Confidence 88888898888999999999999999999999 99999999999888777755
No 349
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=77.69 E-value=3.1 Score=36.68 Aligned_cols=59 Identities=17% Similarity=0.227 Sum_probs=39.9
Q ss_pred hhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccch-hhhhcCHHHHHHHHHHHHH
Q 030634 55 KKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADL-SEAKGDFDKASECFQRAVD 115 (174)
Q Consensus 55 ~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~-~~a~~~~~~Ai~~~~kAl~ 115 (174)
.+-+..|+..+++|.. -++|+.|.+++-++..+|-+.-.. .+-..-|.+|.+++++|-.
T Consensus 331 ~~l~~~Al~yL~kA~d--~ddPetWv~vAEa~I~LGNL~d~eS~eQe~~Y~eAE~iL~kAN~ 390 (404)
T PF12753_consen 331 QELIKKALEYLKKAQD--EDDPETWVDVAEAMIDLGNLYDNESKEQEKAYKEAEKILKKANK 390 (404)
T ss_dssp HHHHHHHHHHHHHHHH--S--TTHHHHHHHHHHHHHHH-SSHHH-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhc--cCChhHHHHHHHHHhhhhcccccchHHHHHHHHHHHHHHHHHhh
Confidence 4567889999998876 778889999999988888332111 1123347888888888754
No 350
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=77.61 E-value=4 Score=36.14 Aligned_cols=58 Identities=14% Similarity=0.119 Sum_probs=43.6
Q ss_pred HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHH
Q 030634 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVI---------DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKA 106 (174)
Q Consensus 36 ~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l---------dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~A 106 (174)
..|.+++..+|+| ..|++.++-. ++ -+-+...+|.+|-+|+.++ +|.+|
T Consensus 126 igLlRvh~LLGDY----------~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlr-----------RY~DA 183 (404)
T PF10255_consen 126 IGLLRVHCLLGDY----------YQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLR-----------RYADA 183 (404)
T ss_pred HHHHHHHHhccCH----------HHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHH-----------HHHHH
Confidence 4445677778888 8888877653 22 2224567899999999998 99999
Q ss_pred HHHHHHHHH
Q 030634 107 SECFQRAVD 115 (174)
Q Consensus 107 i~~~~kAl~ 115 (174)
+..|...|-
T Consensus 184 ir~f~~iL~ 192 (404)
T PF10255_consen 184 IRTFSQILL 192 (404)
T ss_pred HHHHHHHHH
Confidence 999988874
No 351
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=77.36 E-value=20 Score=35.12 Aligned_cols=93 Identities=10% Similarity=-0.163 Sum_probs=64.5
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
..|++|+..+++. .-.|.-|--|...|.+|..+|++ +|-|++|+-|++..|++|..-...-.+-+++.
T Consensus 533 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 600 (932)
T PRK13184 533 RDFTQALSEFSYL-HGGVGAPLEYLGKALVYQRLGEY----------NEEIKSLLLALKRYSQHPEISRLRDHLVYRLH- 600 (932)
T ss_pred HHHHHHHHHHHHh-cCCCCCchHHHhHHHHHHHhhhH----------HHHHHHHHHHHHhcCCCCccHHHHHHHHHHHH-
Confidence 3678888888765 45677888888888999999998 99999999999999999986433222222211
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
...-..-..|....--++.+-|...
T Consensus 601 -----~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (932)
T PRK13184 601 -----ESLYKHRREALVFMLLALWIAPEKI 625 (932)
T ss_pred -----HHHHHHHHHHHHHHHHHHHhCcccc
Confidence 0000134566666667777777655
No 352
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=77.07 E-value=13 Score=28.81 Aligned_cols=51 Identities=27% Similarity=0.225 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC
Q 030634 14 SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK 75 (174)
Q Consensus 14 ~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~ 75 (174)
.+..++.+++.++..| ++..+.+++.++...|+. ++|....+++..+.|.+
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~----------~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDP----------EEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhCCcH
Confidence 4555666777777777 788999999999999999 99999999999999943
No 353
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=76.23 E-value=7.1 Score=21.08 Aligned_cols=34 Identities=26% Similarity=0.438 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
.+.+.||.+|.. |. -...+.++|+.+|++|.+..
T Consensus 2 ~a~~~lg~~~~~-G~------g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEY-GL------GVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHc-CC------CCCcCHHHHHHHHHHHHHcc
Confidence 577889999864 20 11238999999999997653
No 354
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=76.05 E-value=5.1 Score=22.19 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=23.7
Q ss_pred HHHHHHHH--HHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 76 HYTLWSLG--NAHTSCGFLTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 76 ~~a~~~LG--~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
+.+.+.|| .+|.. |. ... ..++++|+.+|++|.+.+
T Consensus 1 a~A~~~lg~~~~~~~-g~--~g~---~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYN-GK--GGV---PKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHH-TS--TSS---CHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHhhhh-cc--CCc---cccccchHHHHHHHHHcc
Confidence 56889999 55544 21 001 126899999999997753
No 355
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.98 E-value=20 Score=24.48 Aligned_cols=38 Identities=13% Similarity=0.078 Sum_probs=32.0
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHH---HHHHhcCc
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGE---ALLELSQF 48 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~---~l~~~g~~ 48 (174)
.....+|+....++++..++.++-+..+|. ++...|++
T Consensus 19 ~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gky 59 (80)
T PF10579_consen 19 QNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKY 59 (80)
T ss_pred cchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHH
Confidence 457789999999999999999998888875 56777777
No 356
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=75.32 E-value=9 Score=30.80 Aligned_cols=56 Identities=23% Similarity=0.169 Sum_probs=39.3
Q ss_pred hhhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH
Q 030634 10 RLLLSEHNRKTAEANYAKDPL-DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY 77 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~-~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~ 77 (174)
+++.+++|++.+.-. .+++ .+..-...|.++...|+- ++|+..|+++++.+++.+.
T Consensus 138 q~~k~D~AL~~L~t~--~~~~w~~~~~elrGDill~kg~k----------~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 138 QQKKADAALKTLDTI--KEESWAAIVAELRGDILLAKGDK----------QEARAAYEKALESDASPAA 194 (207)
T ss_pred HhhhHHHHHHHHhcc--ccccHHHHHHHHhhhHHHHcCch----------HHHHHHHHHHHHccCChHH
Confidence 345666666655433 1222 233456789999999998 9999999999999866554
No 357
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=74.68 E-value=8.4 Score=26.20 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=11.5
Q ss_pred HHHHHHHHHHHHHhCC
Q 030634 58 INEAISKFEEALVIDP 73 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP 73 (174)
++.|....++||+.|.
T Consensus 5 ~~~A~~~I~kaL~~dE 20 (79)
T cd02679 5 YKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHhhhhh
Confidence 4778888888777654
No 358
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=74.10 E-value=52 Score=27.66 Aligned_cols=149 Identities=15% Similarity=0.110 Sum_probs=93.3
Q ss_pred HHHHHHHHHhhCCCCHHHHHHHHHHHHHhcC-cc---cchh--------hhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 17 NRKTAEANYAKDPLDADNLTRWGEALLELSQ-FE---SVSD--------SKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 17 Al~~~~~al~~~P~~~~a~~~lg~~l~~~g~-~~---~~~~--------~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
-+..++.=++..|++..++...|..+....- .. .+.. .....+.|+..+.+|+.++|+...++..+-+
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~~A~~~m~~ 141 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPVAAAIGMIN 141 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 3444555566799999999999988765321 10 1110 1234699999999999999999999999888
Q ss_pred HHHhCCCC-------cc----chhhhh-----cCHHHHHHHHHHHHHhCCCCH-----------------------HHHH
Q 030634 85 AHTSCGFL-------TA----DLSEAK-----GDFDKASECFQRAVDEEPTNE-----------------------LYQK 125 (174)
Q Consensus 85 a~~~lG~~-------~~----~~~~a~-----~~~~~Ai~~~~kAl~l~P~~~-----------------------~y~~ 125 (174)
+-..+|+. .+ ..+... +-.+++..++.+ .-++|--. ..+.
T Consensus 142 ~s~~fgeP~WL~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~-~g~~~~~~~p~~lP~~L~~~~~~~~~~~~~YWl~~ 220 (277)
T PF13226_consen 142 ISAYFGEPDWLAALFAGQPAESRPLAHAEYDPEVWQAAAALLAR-YGLNPLAELPQALPASLPARTEDELEDPLDYWLRH 220 (277)
T ss_pred HHhhcCCchHHHHHHCCCCCCcchHHHhhcchhhHHHHHHHHHH-cCCCccccCcccCcccccchhhhhccchHHHHHHH
Confidence 88888841 00 011111 112344443332 22222211 6678
Q ss_pred HHhcCCCChHHHHHHHHHHHhccccCCCCchhhHHHHHHHHHh
Q 030634 126 SLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQVNFCICVH 168 (174)
Q Consensus 126 Al~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (174)
+|.+.|.......... ++-+-|-||..+.++...+.-+|=|
T Consensus 221 ~l~~~p~~~~~~~~y~--~yl~PRWGgs~e~i~~~~~~p~C~~ 261 (277)
T PF13226_consen 221 ALAIRPGDFEALEAYI--YYLYPRWGGSHEEIDAFIDGPLCAH 261 (277)
T ss_pred HHHhCcchHHHHHHHH--HHhCCccCCCHHHHHHHhcChhhcc
Confidence 8899887776665543 3444455777888888888777754
No 359
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.98 E-value=10 Score=25.59 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~ 115 (174)
..|+....+|++.| ..| +|++|+.+|+.+++
T Consensus 4 ~~Ai~~a~~Ave~D---------------~~g-----------~y~eA~~~Y~~aie 34 (76)
T cd02681 4 RDAVQFARLAVQRD---------------QEG-----------RYSEAVFYYKEAAQ 34 (76)
T ss_pred HHHHHHHHHHHHHH---------------Hcc-----------CHHHHHHHHHHHHH
Confidence 56777777777754 455 66666666666655
No 360
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=73.12 E-value=31 Score=26.65 Aligned_cols=65 Identities=11% Similarity=0.109 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHhCCCCccchhhhhcCHHHHHH
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH---YTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~---~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~ 108 (174)
-.++..+|.-|...|+. ++|+++|.++.+.-.... +.++++-.+....| ++.....
T Consensus 36 r~~~~~l~~~~~~~Gd~----------~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~-----------d~~~v~~ 94 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDL----------EEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFG-----------DWSHVEK 94 (177)
T ss_pred HHHHHHHHHHHHHhhhH----------HHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhC-----------CHHHHHH
Confidence 35777999999999998 999999999877533222 34566666667767 8888888
Q ss_pred HHHHHHHhC
Q 030634 109 CFQRAVDEE 117 (174)
Q Consensus 109 ~~~kAl~l~ 117 (174)
+..+|-.+-
T Consensus 95 ~i~ka~~~~ 103 (177)
T PF10602_consen 95 YIEKAESLI 103 (177)
T ss_pred HHHHHHHHH
Confidence 888876653
No 361
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=72.91 E-value=10 Score=25.46 Aligned_cols=44 Identities=14% Similarity=0.181 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
..|+..+.+|++.| ..| ...+|...|.+|+++|..+++..|+..
T Consensus 4 ~~a~~l~~~Ave~D---------------~~g----~y~eAl~~Y~~aie~l~~~lk~e~d~~ 47 (77)
T cd02683 4 LAAKEVLKRAVELD---------------QEG----RFQEALVCYQEGIDLLMQVLKGTKDEA 47 (77)
T ss_pred HHHHHHHHHHHHHH---------------Hhc----cHHHHHHHHHHHHHHHHHHHhhCCCHH
Confidence 67777777776643 334 233334456666666666677777554
No 362
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=72.46 E-value=8.7 Score=25.22 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=10.7
Q ss_pred hcCHHHHHHHHHHHHHhCCC
Q 030634 100 KGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 100 ~~~~~~Ai~~~~kAl~l~P~ 119 (174)
...|.+|++.|.++++..|+
T Consensus 26 l~~Y~~a~e~l~~~~~~~~~ 45 (75)
T cd02656 26 LELYKEALDYLLQALKAEKE 45 (75)
T ss_pred HHHHHHHHHHHHHHhccCCC
Confidence 33455555555555555554
No 363
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=72.36 E-value=8.7 Score=25.24 Aligned_cols=44 Identities=27% Similarity=0.345 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
+++|+....+|++.|- .| ...+|...|.+|++++.++++..|+.
T Consensus 5 ~~~A~~li~~Av~~d~---------------~g----~~~eAl~~Y~~a~e~l~~~~~~~~~~ 48 (77)
T smart00745 5 LSKAKELISKALKADE---------------AG----DYEEALELYKKAIEYLLEGIKVESDS 48 (77)
T ss_pred HHHHHHHHHHHHHHHH---------------cC----CHHHHHHHHHHHHHHHHHHhccCCCH
Confidence 4677777777766443 34 33334445666666666666666653
No 364
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=72.14 E-value=13 Score=24.62 Aligned_cols=44 Identities=27% Similarity=0.361 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
+++|+..+.+|++.| ..| ...+|...|.+|++.|.++++..|+.
T Consensus 3 ~~~A~~l~~~Av~~D---------------~~g----~y~eA~~~Y~~aie~l~~~~k~e~~~ 46 (75)
T cd02678 3 LQKAIELVKKAIEED---------------NAG----NYEEALRLYQHALEYFMHALKYEKNP 46 (75)
T ss_pred HHHHHHHHHHHHHHH---------------HcC----CHHHHHHHHHHHHHHHHHHHhhCCCH
Confidence 367777777775533 334 33333445566666666666666643
No 365
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=71.75 E-value=13 Score=19.99 Aligned_cols=28 Identities=14% Similarity=-0.048 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 61 AISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 61 Ai~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
.+..-.+++..+|++..+|..+-.++..
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~ 29 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQ 29 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHH
Confidence 4567789999999999999877666543
No 366
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=71.60 E-value=12 Score=30.80 Aligned_cols=57 Identities=18% Similarity=0.099 Sum_probs=38.4
Q ss_pred hhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhCCCCccchhhhhc-CHHHHHHHHHHHHHh
Q 030634 56 KIINEAISKFEEALVID-PAKHYTLWSLGNAHTSCGFLTADLSEAKG-DFDKASECFQRAVDE 116 (174)
Q Consensus 56 ~~~~eAi~~lekAl~ld-P~~~~a~~~LG~a~~~lG~~~~~~~~a~~-~~~~Ai~~~~kAl~l 116 (174)
|.++.|..++.|+-.+. ..+|...-.|+.+++..| ..--..+ +++.|+.++++|+++
T Consensus 7 ~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G----~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 7 GDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIG----KSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred CCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHH----HHHHHcCCChHHHHHHHHHHHHH
Confidence 33499999999987665 555555555555555544 1111134 899999999999988
No 367
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=71.45 E-value=9.9 Score=32.62 Aligned_cols=51 Identities=16% Similarity=0.145 Sum_probs=43.1
Q ss_pred hHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lek 67 (174)
-|---+.+.+|+...++++..||-+.+.+..+=.++..+|+- -.|+++|++
T Consensus 288 ~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~----------is~~khyer 338 (361)
T COG3947 288 AYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDE----------ISAIKHYER 338 (361)
T ss_pred HHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccc----------hhhhhHHHH
Confidence 344557899999999999999999999999999999999986 566666654
No 368
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=70.62 E-value=92 Score=28.98 Aligned_cols=81 Identities=10% Similarity=-0.084 Sum_probs=51.8
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCccc-------------------------chhhhhhHHHHHHH
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFES-------------------------VSDSKKIINEAISK 64 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~-------------------------~~~~~~~~~eAi~~ 64 (174)
..|.|+.....+++.+---....+.|.+.+..+...|+..- .....|.+..|..+
T Consensus 309 ~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~~n~~~A~~~ 388 (577)
T KOG1258|consen 309 TLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESNGNFDDAKVI 388 (577)
T ss_pred hcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhhccHHHHHHH
Confidence 45566666666666666666666777777666666555421 11123455888888
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634 65 FEEALVIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 65 lekAl~ldP~~~~a~~~LG~a~~~lG 90 (174)
+++...--|....+-..-.++....|
T Consensus 389 lq~i~~e~pg~v~~~l~~~~~e~r~~ 414 (577)
T KOG1258|consen 389 LQRIESEYPGLVEVVLRKINWERRKG 414 (577)
T ss_pred HHHHHhhCCchhhhHHHHHhHHHHhc
Confidence 88888777888877666566666656
No 369
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=70.48 E-value=10 Score=25.56 Aligned_cols=15 Identities=27% Similarity=0.395 Sum_probs=10.1
Q ss_pred CHHHHHHHHHHHHHh
Q 030634 102 DFDKASECFQRAVDE 116 (174)
Q Consensus 102 ~~~~Ai~~~~kAl~l 116 (174)
+|++|+.+|..|++.
T Consensus 21 ny~eA~~lY~~ale~ 35 (75)
T cd02680 21 NAEEAIELYTEAVEL 35 (75)
T ss_pred hHHHHHHHHHHHHHH
Confidence 677777777776653
No 370
>PF12854 PPR_1: PPR repeat
Probab=68.14 E-value=13 Score=20.62 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=24.2
Q ss_pred CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHH
Q 030634 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67 (174)
Q Consensus 29 P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lek 67 (174)
+.|...|..+-..+.+.|+. ++|++.|++
T Consensus 4 ~Pd~~ty~~lI~~~Ck~G~~----------~~A~~l~~~ 32 (34)
T PF12854_consen 4 EPDVVTYNTLIDGYCKAGRV----------DEAFELFDE 32 (34)
T ss_pred CCcHhHHHHHHHHHHHCCCH----------HHHHHHHHh
Confidence 34667888888999999998 999999875
No 371
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=67.53 E-value=33 Score=30.22 Aligned_cols=78 Identities=15% Similarity=0.069 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH-----------HHHHHH
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------LYQKSL 127 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~-----------~y~~Al 127 (174)
.+-|+....|+++||+...++..|+.--.. -.-+|...+++||+.-..+- .+.-..
T Consensus 201 ~~RI~~A~~ALeIN~eCA~AyvLLAEEEa~-------------Ti~~AE~l~k~ALka~e~~yr~sqq~qh~~~~~da~~ 267 (556)
T KOG3807|consen 201 PARIKAAYQALEINNECATAYVLLAEEEAT-------------TIVDAERLFKQALKAGETIYRQSQQCQHQSPQHEAQL 267 (556)
T ss_pred HHHHHHHHHHHhcCchhhhHHHhhhhhhhh-------------hHHHHHHHHHHHHHHHHHHHhhHHHHhhhccchhhhh
Confidence 566788889999999999998887665444 45677777777776433211 111111
Q ss_pred hcCCCChH--HHHHHHHHHHhcccc
Q 030634 128 EVSTKAPE--LHMELHKHGINQQTL 150 (174)
Q Consensus 128 ~l~~~~~~--~~~~l~~~~~~~~~~ 150 (174)
+. +-.+. ..-.|+.|...+||+
T Consensus 268 rR-Dtnvl~YIKRRLAMCARklGrl 291 (556)
T KOG3807|consen 268 RR-DTNVLVYIKRRLAMCARKLGRL 291 (556)
T ss_pred hc-ccchhhHHHHHHHHHHHHhhhH
Confidence 22 22222 334678888888888
No 372
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=66.69 E-value=23 Score=32.21 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=39.5
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEA 68 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekA 68 (174)
+|.|.++.-...=..+++| ++.++..+|.+++...+| ++|-.++.+.
T Consensus 475 qgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y----------~eA~~~l~~L 521 (549)
T PF07079_consen 475 QGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRY----------QEAWEYLQKL 521 (549)
T ss_pred cccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhH----------HHHHHHHHhC
Confidence 4566677777777778999 999999999999999998 9999888763
No 373
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=66.59 E-value=15 Score=32.85 Aligned_cols=53 Identities=19% Similarity=0.233 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHH--HhCCC--CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 58 INEAISKFEEAL--VIDPA--KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 58 ~~eAi~~lekAl--~ldP~--~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
++.|-....++. +-+.+ ....+|.+|.+..-++ +|..|.+++-+|+...|.+.
T Consensus 225 ydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiql-----------dYssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 225 YDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQL-----------DYSSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhc-----------chhHHHHHHHHHHHhCcchh
Confidence 455555554443 11222 3344678899999988 99999999999999999865
No 374
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=66.29 E-value=21 Score=31.97 Aligned_cols=31 Identities=26% Similarity=0.453 Sum_probs=25.7
Q ss_pred CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHH
Q 030634 72 DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRA 113 (174)
Q Consensus 72 dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kA 113 (174)
..+++..|-.||.+-...| +++-|.+||+++
T Consensus 343 ~~~~~~~W~~Lg~~AL~~g-----------~~~lAe~c~~k~ 373 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEALRQG-----------NIELAEECYQKA 373 (443)
T ss_dssp CCSTHHHHHHHHHHHHHTT-----------BHHHHHHHHHHC
T ss_pred hcCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHhh
Confidence 3457788899999998888 999999888884
No 375
>PF14852 Fis1_TPR_N: Fis1 N-terminal tetratricopeptide repeat; PDB: 1IYG_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A 1PC2_A 1NZN_A.
Probab=66.19 E-value=10 Score=21.65 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCC
Q 030634 32 ADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP 73 (174)
Q Consensus 32 ~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP 73 (174)
+++.+++|.++...... ..+.+.|.+++..++..|
T Consensus 1 ~qt~FnyAw~Lv~S~~~-------~d~~~Gi~lLe~l~~~~p 35 (35)
T PF14852_consen 1 PQTQFNYAWGLVKSNNR-------EDQQEGIALLEELYRDEP 35 (35)
T ss_dssp -HHHHHHHHHHHHSSSH-------HHHHHHHHHHHHHCCCS-
T ss_pred CcchhHHHHHHhcCCCH-------HHHHHHHHHHHHHHhccC
Confidence 45678888888886554 445899999998877655
No 376
>PF12854 PPR_1: PPR repeat
Probab=65.75 E-value=18 Score=20.00 Aligned_cols=27 Identities=26% Similarity=0.251 Sum_probs=22.6
Q ss_pred CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHH
Q 030634 75 KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (174)
Q Consensus 75 ~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~k 112 (174)
|...|..|-..|.+.| +.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G-----------~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAG-----------RVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCC-----------CHHHHHHHHHh
Confidence 4556778888999988 99999999875
No 377
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=64.84 E-value=33 Score=28.82 Aligned_cols=61 Identities=15% Similarity=0.149 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhCC-----C-----Cc-cchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 61 AISKFEEALVIDPAKHYTLWSLGNAHTSCG-----F-----LT-ADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 61 Ai~~lekAl~ldP~~~~a~~~LG~a~~~lG-----~-----~~-~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
-...++.=++-.|++..++..+|..+...+ . .+ ..+.-+..-.+.|..++.+|++++|...
T Consensus 62 ~~~~LkaWv~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~ 133 (277)
T PF13226_consen 62 RLAVLKAWVAACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPV 133 (277)
T ss_pred HHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 455666667889999999999999887654 0 11 1333344456778888888888887766
No 378
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.61 E-value=23 Score=32.54 Aligned_cols=85 Identities=16% Similarity=0.076 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHhCCCC
Q 030634 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPA--KHYTLWSLGNAHTSCGFL 92 (174)
Q Consensus 15 ~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~--~~~a~~~LG~a~~~lG~~ 92 (174)
+...+.........|+++-.....+..+...|+. +.|+..++..++..=+ .+-.+|.+|.++..+.
T Consensus 250 ~~~~~~Ll~~~~~~p~ga~wll~~ar~l~~~g~~----------eaa~~~~~~~v~~~~kQ~~~l~~fE~aw~~v~~~-- 317 (546)
T KOG3783|consen 250 EECEKALKKYRKRYPKGALWLLMEARILSIKGNS----------EAAIDMESLSIPIRMKQVKSLMVFERAWLSVGQH-- 317 (546)
T ss_pred HHHHHHhHHHHHhCCCCccHHHHHHHHHHHcccH----------HHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH--
Confidence 5666677777778999999999999999988886 9999999988882211 2334567777776655
Q ss_pred ccchhhhhcCHHHHHHHHHHHHHhCCCC
Q 030634 93 TADLSEAKGDFDKASECFQRAVDEEPTN 120 (174)
Q Consensus 93 ~~~~~~a~~~~~~Ai~~~~kAl~l~P~~ 120 (174)
+|..|..++....+++-=+
T Consensus 318 ---------~~~~aad~~~~L~desdWS 336 (546)
T KOG3783|consen 318 ---------QYSRAADSFDLLRDESDWS 336 (546)
T ss_pred ---------HHHHHhhHHHHHHhhhhhh
Confidence 8888888777776665433
No 379
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=63.09 E-value=44 Score=27.14 Aligned_cols=67 Identities=25% Similarity=0.307 Sum_probs=44.3
Q ss_pred HHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH-----hCCCCHHH---HHHHHHHHHh-CCCCccchhhhhcCHHHHHH
Q 030634 38 WGEALLELSQFESVSDSKKIINEAISKFEEALV-----IDPAKHYT---LWSLGNAHTS-CGFLTADLSEAKGDFDKASE 108 (174)
Q Consensus 38 lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~-----ldP~~~~a---~~~LG~a~~~-lG~~~~~~~~a~~~~~~Ai~ 108 (174)
.|..+..+-++..+.+.....++|...|++|+. +.|.+|-- ..|.+.-|+. +| +.++|++
T Consensus 122 kgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~-----------~~~~A~~ 190 (236)
T PF00244_consen 122 KGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILN-----------DPEKAIE 190 (236)
T ss_dssp HHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS------------HHHHHH
T ss_pred hccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcC-----------ChHHHHH
Confidence 577776666665554445567888888888875 47777753 3455554433 45 9999999
Q ss_pred HHHHHHH
Q 030634 109 CFQRAVD 115 (174)
Q Consensus 109 ~~~kAl~ 115 (174)
..++|+.
T Consensus 191 ia~~afd 197 (236)
T PF00244_consen 191 IAKQAFD 197 (236)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888654
No 380
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=62.86 E-value=50 Score=25.24 Aligned_cols=42 Identities=19% Similarity=0.212 Sum_probs=29.4
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 64 KFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 64 ~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
.+....+-+.-+|+.++.+|++|.++| +..+|-+..++|-+.
T Consensus 108 i~~~l~kn~~~~p~~L~kia~Ay~klg-----------~~r~~~ell~~ACek 149 (161)
T PF09205_consen 108 IYNELKKNEEINPEFLVKIANAYKKLG-----------NTREANELLKEACEK 149 (161)
T ss_dssp HHHHH-----S-HHHHHHHHHHHHHTT------------HHHHHHHHHHHHHT
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHhc-----------chhhHHHHHHHHHHh
Confidence 334444456678999999999999999 999999999998764
No 381
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=62.86 E-value=26 Score=29.84 Aligned_cols=145 Identities=14% Similarity=0.071 Sum_probs=90.3
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccch-hhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVS-DSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF 91 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~-~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~ 91 (174)
+-.+|++.-...++.+|..-.+|...=.+... .+..+ +...-++.-+..+..+++-+|++-.+|.-.-.++...-
T Consensus 47 ys~~aLklt~elid~npe~ytiwnyr~~I~~h---~~~~sedk~~~ldneld~~~~~lk~~PK~YqiW~HR~~~Le~~p- 122 (328)
T COG5536 47 YSVRALKLTQELIDKNPEFYTIWNYRFSILKH---VQMVSEDKEHLLDNELDFLDEALKDNPKNYQIWHHRQWMLELFP- 122 (328)
T ss_pred cCHHHHHHhHHHHhhCHHHHHHHhhHHHHHhh---hhhhcccchhhhhcHHHHHHHHHhcCCchhhhhHHHHHHHHhCC-
Confidence 34567777788888888887777766655544 11111 22344577778899999999999999998888876642
Q ss_pred CccchhhhhcCHHHHHHHHHHHHHhCCCCH---HHHHHHhcCCCChHHHHHHHHHHHhcccc--CCCCchhhHHHHHHHH
Q 030634 92 LTADLSEAKGDFDKASECFQRAVDEEPTNE---LYQKSLEVSTKAPELHMELHKHGINQQTL--GGGSSASSAQVNFCIC 166 (174)
Q Consensus 92 ~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---~y~~Al~l~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~ 166 (174)
..++..-+..-++.++.||.|- .||+-.=..-.+...++-+... .+..+- .+.++.-||.+++.+.
T Consensus 123 --------~~~~~rEl~itkklld~DsrNyH~W~YR~~vl~~ie~~~N~S~~k~e-~eytt~~I~tdi~N~SaW~~r~~~ 193 (328)
T COG5536 123 --------KPSWGRELFITKKLLDSDSRNYHVWSYRRWVLRTIEDLFNFSDLKHE-LEYTTSLIETDIYNNSAWHHRYIW 193 (328)
T ss_pred --------CcccchhHHHHHHHhcccccccceeeeEeeeeecchhhccchhHHHH-HHhHHHHHhhCCCChHHHHHHHHH
Confidence 1267778888899999999887 3443322111112222222222 222222 3347777777777666
Q ss_pred Hhhh
Q 030634 167 VHQM 170 (174)
Q Consensus 167 ~~~~ 170 (174)
..++
T Consensus 194 ~~~~ 197 (328)
T COG5536 194 IERR 197 (328)
T ss_pred HHHH
Confidence 6554
No 382
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=62.45 E-value=19 Score=29.76 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=52.2
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY 77 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~ 77 (174)
-+...+|+..++.-++.+|.+......+=..+.-.|++ ++|...++-+-.++|++..
T Consensus 14 ~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw----------~kAl~Ql~l~a~l~p~~t~ 70 (273)
T COG4455 14 DNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDW----------EKALAQLNLAATLSPQDTV 70 (273)
T ss_pred hccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchH----------HHHHHHHHHHhhcCcccch
Confidence 34678999999999999999999999999999999999 9999999999999999764
No 383
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=62.27 E-value=28 Score=29.81 Aligned_cols=48 Identities=13% Similarity=-0.056 Sum_probs=42.9
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHH
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lek 67 (174)
.....-+|+-.++.++..+|.+.+....+-.+|..+|-. ..|...|..
T Consensus 195 ~~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~----------~~A~~~~~~ 242 (365)
T PF09797_consen 195 DSEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAG----------SLALEHYES 242 (365)
T ss_pred CHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHh
Confidence 345678899999999999999999999999999999998 888888864
No 384
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.80 E-value=54 Score=30.19 Aligned_cols=67 Identities=18% Similarity=0.150 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh---CCC----CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHH
Q 030634 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI---DPA----KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (174)
Q Consensus 35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l---dP~----~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai 107 (174)
+..+|.++..+|+. ..|..+|..+++. .-. -|.|+|-||..+..+| |-..++.
T Consensus 452 ~lL~g~~lR~Lg~~----------~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~----------g~~~e~~ 511 (546)
T KOG3783|consen 452 YLLKGVILRNLGDS----------EVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLG----------GGLKEAR 511 (546)
T ss_pred HHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcc----------cChHHHH
Confidence 45679999999987 8999999888733 222 4578999999999988 2389999
Q ss_pred HHHHHHHHhCCCCH
Q 030634 108 ECFQRAVDEEPTNE 121 (174)
Q Consensus 108 ~~~~kAl~l~P~~~ 121 (174)
.++++|-+-..++.
T Consensus 512 ~~L~kAr~~~~dY~ 525 (546)
T KOG3783|consen 512 ALLLKAREYASDYE 525 (546)
T ss_pred HHHHHHHhhccccc
Confidence 99999988877665
No 385
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=61.78 E-value=78 Score=28.48 Aligned_cols=74 Identities=26% Similarity=0.274 Sum_probs=53.7
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhCCCCccchhhh
Q 030634 21 AEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH-TSCGFLTADLSEA 99 (174)
Q Consensus 21 ~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~-~~lG~~~~~~~~a 99 (174)
+.+..++.|++.+.....+.+-+..|+| ..|...-+.+....|...-.. .|+.+- ...|
T Consensus 318 a~~L~slk~nnaes~~~va~aAlda~e~----------~~ARa~Aeaa~r~~pres~~l-LlAdIeeAetG--------- 377 (531)
T COG3898 318 AKKLESLKPNNAESSLAVAEAALDAGEF----------SAARAKAEAAAREAPRESAYL-LLADIEEAETG--------- 377 (531)
T ss_pred HHHHHhcCccchHHHHHHHHHHHhccch----------HHHHHHHHHHhhhCchhhHHH-HHHHHHhhccC---------
Confidence 4445567788888888888877777777 888888888888888766543 333332 3335
Q ss_pred hcCHHHHHHHHHHHHHh
Q 030634 100 KGDFDKASECFQRAVDE 116 (174)
Q Consensus 100 ~~~~~~Ai~~~~kAl~l 116 (174)
+-.+...++.++++-
T Consensus 378 --Dqg~vR~wlAqav~A 392 (531)
T COG3898 378 --DQGKVRQWLAQAVKA 392 (531)
T ss_pred --chHHHHHHHHHHhcC
Confidence 889999999999873
No 386
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=61.50 E-value=25 Score=23.40 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHhC
Q 030634 59 NEAISKFEEALVID 72 (174)
Q Consensus 59 ~eAi~~lekAl~ld 72 (174)
++|+..+.+|++.|
T Consensus 4 ~~Ai~lv~~Av~~D 17 (75)
T cd02684 4 EKAIALVVQAVKKD 17 (75)
T ss_pred HHHHHHHHHHHHHH
Confidence 67888888876543
No 387
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=60.59 E-value=70 Score=31.22 Aligned_cols=90 Identities=19% Similarity=0.054 Sum_probs=65.6
Q ss_pred hhhHHHHHHHHHHHHhhCCC---------CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH----
Q 030634 11 LLLSEHNRKTAEANYAKDPL---------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY---- 77 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~---------~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~---- 77 (174)
..++.+|.....++-..-|. .++.....|.+....|++ ++|++..+.++..-|.+..
T Consensus 428 ~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~----------e~a~~lar~al~~L~~~~~~~r~ 497 (894)
T COG2909 428 QHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDP----------EEAEDLARLALVQLPEAAYRSRI 497 (894)
T ss_pred ccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCH----------HHHHHHHHHHHHhcccccchhhh
Confidence 45677777777766654333 123444556666777777 9999999999998887543
Q ss_pred -HHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 78 -TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 78 -a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+...+|.+..-.| ++++|..+.+.+.+..-.+.
T Consensus 498 ~~~sv~~~a~~~~G-----------~~~~Al~~~~~a~~~a~~~~ 531 (894)
T COG2909 498 VALSVLGEAAHIRG-----------ELTQALALMQQAEQMARQHD 531 (894)
T ss_pred hhhhhhhHHHHHhc-----------hHHHHHHHHHHHHHHHHHcc
Confidence 4667888888888 99999999999888754433
No 388
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=59.82 E-value=11 Score=33.39 Aligned_cols=50 Identities=26% Similarity=0.244 Sum_probs=35.8
Q ss_pred hhhHHHHHHHHHHH-------Hhh-CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH
Q 030634 11 LLLSEHNRKTAEAN-------YAK-DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV 70 (174)
Q Consensus 11 ~~~~~eAl~~~~~a-------l~~-~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ 70 (174)
+|.|..|++..+.. +.. -+-+...++..|.+|+-++|| .+|+..|..++-
T Consensus 135 LGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY----------~DAir~f~~iL~ 192 (404)
T PF10255_consen 135 LGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRY----------ADAIRTFSQILL 192 (404)
T ss_pred ccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHH----------HHHHHHHHHHHH
Confidence 45666777665432 111 233567889999999999999 999999988763
No 389
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=59.43 E-value=57 Score=29.17 Aligned_cols=71 Identities=21% Similarity=0.178 Sum_probs=45.6
Q ss_pred CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHH
Q 030634 28 DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (174)
Q Consensus 28 ~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai 107 (174)
..+++..|-.||.+-+..|++ +-|..+|+++=. . -.|...|...| +-++=.
T Consensus 343 ~~~~~~~W~~Lg~~AL~~g~~----------~lAe~c~~k~~d-----~---~~L~lLy~~~g-----------~~~~L~ 393 (443)
T PF04053_consen 343 ELDDPEKWKQLGDEALRQGNI----------ELAEECYQKAKD-----F---SGLLLLYSSTG-----------DREKLS 393 (443)
T ss_dssp CCSTHHHHHHHHHHHHHTTBH----------HHHHHHHHHCT------H---HHHHHHHHHCT------------HHHHH
T ss_pred hcCcHHHHHHHHHHHHHcCCH----------HHHHHHHHhhcC-----c---cccHHHHHHhC-----------CHHHHH
Confidence 456899999999999999998 999999988532 2 23445566667 655545
Q ss_pred HHHHHHHHhCCCCHHHHHHH
Q 030634 108 ECFQRAVDEEPTNELYQKSL 127 (174)
Q Consensus 108 ~~~~kAl~l~P~~~~y~~Al 127 (174)
+..+.|....-.+..|.-++
T Consensus 394 kl~~~a~~~~~~n~af~~~~ 413 (443)
T PF04053_consen 394 KLAKIAEERGDINIAFQAAL 413 (443)
T ss_dssp HHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHH
Confidence 55555544444444444333
No 390
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=59.31 E-value=20 Score=18.34 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=21.8
Q ss_pred HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 79 ~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
|..+=.+|...| ++++|.+.|++-.+.
T Consensus 3 y~~li~~~~~~~-----------~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 3 YNSLISGYCKMG-----------QFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHHHccc-----------hHHHHHHHHHHHhHC
Confidence 556677888888 999999999987653
No 391
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.68 E-value=88 Score=31.59 Aligned_cols=61 Identities=10% Similarity=0.128 Sum_probs=49.8
Q ss_pred CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHH
Q 030634 29 PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (174)
Q Consensus 29 P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~ 108 (174)
-+.|..|..+|.+.+..|.. .+||..|-+ .+||..|...-.+-...| .|++-+.
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v----------~dAieSyik-----adDps~y~eVi~~a~~~~-----------~~edLv~ 1154 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLV----------KDAIESYIK-----ADDPSNYLEVIDVASRTG-----------KYEDLVK 1154 (1666)
T ss_pred hCChHHHHHHHHHHHhcCch----------HHHHHHHHh-----cCCcHHHHHHHHHHHhcC-----------cHHHHHH
Confidence 46788999999999998887 999999866 478888888777777877 8888888
Q ss_pred HHHHHHH
Q 030634 109 CFQRAVD 115 (174)
Q Consensus 109 ~~~kAl~ 115 (174)
++..|-+
T Consensus 1155 yL~MaRk 1161 (1666)
T KOG0985|consen 1155 YLLMARK 1161 (1666)
T ss_pred HHHHHHH
Confidence 7776654
No 392
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=58.66 E-value=22 Score=20.05 Aligned_cols=27 Identities=15% Similarity=0.152 Sum_probs=22.0
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHH
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGE 40 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~ 40 (174)
.++.|...|++.+...|. +..|..+|.
T Consensus 2 E~dRAR~IyeR~v~~hp~-~k~WikyAk 28 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHPE-VKNWIKYAK 28 (32)
T ss_pred hHHHHHHHHHHHHHhCCC-chHHHHHHH
Confidence 468899999999999966 777777764
No 393
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=58.58 E-value=6.5 Score=34.24 Aligned_cols=66 Identities=17% Similarity=0.155 Sum_probs=54.0
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
.+..|+.....+++.++....++++.|..+....++ ++|+..++.+...+|++..+.-.+..+-..
T Consensus 290 ~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~----------~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~ 355 (372)
T KOG0546|consen 290 GRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNY----------DEALEDLKKAKQKAPNDKAIEEELENVRQK 355 (372)
T ss_pred CCCcceeccccccccChhhCcHHHHHHhHHHhhhch----------hhhHHHHHHhhccCcchHHHHHHHHHhhhH
Confidence 344555566667778899999999999999999998 999999999999999999987666555433
No 394
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=58.48 E-value=22 Score=23.90 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
+.|.....+|++.| ..| ...+|...|.+|++.+.+++...|++.
T Consensus 4 ~~A~~~a~~AVe~D---------------~~g----r~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 4 EMARKYAINAVKAE---------------KEG----NAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHHHH---------------hcC----CHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 56666666666644 344 222233345555666666666677666
No 395
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=58.42 E-value=1.3e+02 Score=26.29 Aligned_cols=54 Identities=15% Similarity=0.040 Sum_probs=37.2
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCH--HHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDA--DNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~--~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l 71 (174)
..+.|..|.+.+......-|.+. +.+..+..+|....+| .+++|...+++.+..
T Consensus 143 n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~f--------d~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 143 NRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRF--------DHKEALEYLEKLLKR 198 (379)
T ss_pred hcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHH
Confidence 34578999999999888533333 4677777777776654 237777777776654
No 396
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.55 E-value=1.3e+02 Score=27.67 Aligned_cols=85 Identities=19% Similarity=0.136 Sum_probs=55.8
Q ss_pred hHHHHHHHHHHHHh-hCCC---CHHHHHHHHHHHH-HhcCcccchhhhhhHHHHHHHHHHHHHhC--CCCHHH----HHH
Q 030634 13 LSEHNRKTAEANYA-KDPL---DADNLTRWGEALL-ELSQFESVSDSKKIINEAISKFEEALVID--PAKHYT----LWS 81 (174)
Q Consensus 13 ~~~eAl~~~~~al~-~~P~---~~~a~~~lg~~l~-~~g~~~~~~~~~~~~~eAi~~lekAl~ld--P~~~~a----~~~ 81 (174)
.-.-|+++++-+++ ..+. .+.+.+.+|.+++ +..++ ++|..+++|++.+. ++..+. .+.
T Consensus 36 LI~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~----------~~Ae~~L~k~~~l~~~~~~~d~k~~~~~l 105 (608)
T PF10345_consen 36 LIATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENL----------DLAETYLEKAILLCERHRLTDLKFRCQFL 105 (608)
T ss_pred HHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 44567777777774 2222 4567888898887 44445 99999999998886 444433 346
Q ss_pred HHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 82 LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~ 119 (174)
++.++...+ . ..|+...+++++.--+
T Consensus 106 l~~i~~~~~-----------~-~~a~~~l~~~I~~~~~ 131 (608)
T PF10345_consen 106 LARIYFKTN-----------P-KAALKNLDKAIEDSET 131 (608)
T ss_pred HHHHHHhcC-----------H-HHHHHHHHHHHHHHhc
Confidence 677777765 3 2377777776665433
No 397
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=55.83 E-value=46 Score=30.95 Aligned_cols=81 Identities=17% Similarity=0.156 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHH
Q 030634 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDK 105 (174)
Q Consensus 31 ~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l-----dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~ 105 (174)
.|-++.+||.+--.. ...+. ..++.+|.+||.. +-.+.--|..+|..|++.+ +|.+
T Consensus 276 YPmALg~LadLeEi~-------pt~~r-~~~~~l~~~AI~sa~~~Y~n~HvYPYty~gg~~yR~~-----------~~~e 336 (618)
T PF05053_consen 276 YPMALGNLADLEEID-------PTPGR-PTPLELFNEAISSARTYYNNHHVYPYTYLGGYYYRHK-----------RYRE 336 (618)
T ss_dssp -HHHHHHHHHHHHHS---------TTS---HHHHHHHHHHHHHHHCTT--SHHHHHHHHHHHHTT------------HHH
T ss_pred CchhhhhhHhHHhhc-------cCCCC-CCHHHHHHHHHHHHHHHhcCCccccceehhhHHHHHH-----------HHHH
Confidence 455556665554321 11222 5667777777755 3344456778888899988 9999
Q ss_pred HHHHHHHHHHhCCCC-------HHHHHHHhcC
Q 030634 106 ASECFQRAVDEEPTN-------ELYQKSLEVS 130 (174)
Q Consensus 106 Ai~~~~kAl~l~P~~-------~~y~~Al~l~ 130 (174)
|+.++.+|-..=-.+ +.|++.+++.
T Consensus 337 A~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIA 368 (618)
T PF05053_consen 337 ALRSWAEAADVIRKYNYSREDEEIYKEFLEIA 368 (618)
T ss_dssp HHHHHHHHHHHHTTSB--GGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence 999998886542221 1677777763
No 398
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=55.59 E-value=39 Score=28.96 Aligned_cols=46 Identities=20% Similarity=0.297 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHH----HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634 58 INEAISKFEEALVIDPAKHYT----LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP~~~~a----~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl 114 (174)
.++|+..|++++++.|.-.++ +-.+-.+++.+| +|++-++.|++.|
T Consensus 43 p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~-----------~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 43 PKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLG-----------NYKEMMERYKQLL 92 (440)
T ss_pred HHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccc-----------cHHHHHHHHHHHH
Confidence 499999999999999997764 445566778888 6666666555544
No 399
>PF13041 PPR_2: PPR repeat family
Probab=55.48 E-value=39 Score=19.84 Aligned_cols=40 Identities=20% Similarity=0.264 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh--CCCCHHHHHH
Q 030634 76 HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE--EPTNELYQKS 126 (174)
Q Consensus 76 ~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l--~P~~~~y~~A 126 (174)
.-.|..+=..+.+.| ++++|.+.|++..+. .|+...|.-.
T Consensus 3 ~~~yn~li~~~~~~~-----------~~~~a~~l~~~M~~~g~~P~~~Ty~~l 44 (50)
T PF13041_consen 3 VVTYNTLISGYCKAG-----------KFEEALKLFKEMKKRGIKPDSYTYNIL 44 (50)
T ss_pred hHHHHHHHHHHHHCc-----------CHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 445677777888888 999999999998864 5665544433
No 400
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=55.12 E-value=50 Score=24.84 Aligned_cols=38 Identities=13% Similarity=-0.033 Sum_probs=31.6
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCc
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQF 48 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~ 48 (174)
-|.|.-|+.++..++..+|++.++...++.++..+|.-
T Consensus 83 ~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~ 120 (141)
T PF14863_consen 83 AGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQ 120 (141)
T ss_dssp CT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHh
Confidence 45788899999999999999999999999999988775
No 401
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=54.94 E-value=52 Score=25.16 Aligned_cols=50 Identities=16% Similarity=0.098 Sum_probs=32.9
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALV 70 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ 70 (174)
+++-++--+.++....-+..+|+.+..+|.+|-.+|.. .+|-+.+.+|-+
T Consensus 99 ~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~----------r~~~ell~~ACe 148 (161)
T PF09205_consen 99 QGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNT----------REANELLKEACE 148 (161)
T ss_dssp TT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-H----------HHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcch----------hhHHHHHHHHHH
Confidence 34445555556666555677899999999999999998 888888888765
No 402
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=54.52 E-value=56 Score=28.65 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 59 NEAISKFEEALVI--DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 59 ~eAi~~lekAl~l--dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
..++...+..... -......|-..|..+..+| ..++|-..|++|+.+.++-.
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLg-----------r~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLG-----------RVEEARAAYDRAIALARNAA 399 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhC-----------ChHHHHHHHHHHHHhcCChH
Confidence 4444444443332 2224445567788888888 99999999999999988765
No 403
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=54.17 E-value=1.8e+02 Score=26.82 Aligned_cols=92 Identities=18% Similarity=0.103 Sum_probs=58.9
Q ss_pred HhhhhHHHHHHHHHHHH---hhCCCCH-H---------------HHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHH
Q 030634 9 DRLLLSEHNRKTAEANY---AKDPLDA-D---------------NLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL 69 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al---~~~P~~~-~---------------a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl 69 (174)
....++++|++..++.. ...|..+ . ..+..+.+..-.+++ .+|...++.+.
T Consensus 319 ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~----------~~a~~~l~~~~ 388 (608)
T PF10345_consen 319 KSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDW----------SKATQELEFMR 388 (608)
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCH----------HHHHHHHHHHH
Confidence 56678889999888888 1222221 0 112222233334444 66766666655
Q ss_pred Hh---CCC------CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHH--------HHHHhCCCCH
Q 030634 70 VI---DPA------KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ--------RAVDEEPTNE 121 (174)
Q Consensus 70 ~l---dP~------~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~--------kAl~l~P~~~ 121 (174)
.. .|. .+..++..|..+...| +.+.|+.+|. .+....|.++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g-----------~l~~A~~~y~~~~~~~~~~~~~~~~~~E 446 (608)
T PF10345_consen 389 QLCQRSPSKLYESLYPLLHYLLGLYYQSTG-----------DLEAALYQYQKPRFLLCEAANRKSKFRE 446 (608)
T ss_pred HHHhcCccchhhhhhHHHHHHHHHHHHHcC-----------CHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence 44 333 4777899999998888 9999999998 5556666665
No 404
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=53.36 E-value=1.4e+02 Score=29.09 Aligned_cols=91 Identities=22% Similarity=0.213 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCC
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFL 92 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~ 92 (174)
.+++-...-++..++.|..+..|..|......+..- +.-.++...|++++. |-+++..|-..++-....+
T Consensus 128 dl~kl~~ar~~~~~~~pl~~~lWl~Wl~d~~~mt~s-------~~~~~v~~~~ekal~-dy~~v~iw~e~~~y~~~~~-- 197 (881)
T KOG0128|consen 128 DLEKLRQARLEMSEIAPLPPHLWLEWLKDELSMTQS-------EERKEVEELFEKALG-DYNSVPIWEEVVNYLVGFG-- 197 (881)
T ss_pred chHHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-------cchhHHHHHHHHHhc-ccccchHHHHHHHHHHhcc--
Confidence 344444444444555666666666666555444332 111566666666665 5555555555544444433
Q ss_pred ccchhhhhcCHHHHHHHHHHHHH
Q 030634 93 TADLSEAKGDFDKASECFQRAVD 115 (174)
Q Consensus 93 ~~~~~~a~~~~~~Ai~~~~kAl~ 115 (174)
......++++.-...|.+||+
T Consensus 198 --~~~~~~~d~k~~R~vf~ral~ 218 (881)
T KOG0128|consen 198 --NVAKKSEDYKKERSVFERALR 218 (881)
T ss_pred --ccccccccchhhhHHHHHHHh
Confidence 111222355555556666554
No 405
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=51.79 E-value=1.5e+02 Score=25.91 Aligned_cols=79 Identities=16% Similarity=0.158 Sum_probs=51.3
Q ss_pred hHHhhhhHHHHHHHHHHHHhh----CCCCHHHH--HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAK----DPLDADNL--TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW 80 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~----~P~~~~a~--~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~ 80 (174)
-.++.+..++|++..++..+. +-.++-++ ...|+++...|+. ...++.+++..+.++....+.|+-..-+|
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DL---k~~kk~ldd~~~~ld~~~~v~~~Vh~~fY 160 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDL---KEIKKLLDDLKSMLDSLDGVTSNVHSSFY 160 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccH---HHHHHHHHHHHHHHhcccCCChhhhhhHH
Confidence 356777889999998888774 22244444 4455666666665 23344556666666666677776677778
Q ss_pred HHHHHHHh
Q 030634 81 SLGNAHTS 88 (174)
Q Consensus 81 ~LG~a~~~ 88 (174)
.++.-|++
T Consensus 161 ~lssqYyk 168 (380)
T KOG2908|consen 161 SLSSQYYK 168 (380)
T ss_pred HHHHHHHH
Confidence 88887766
No 406
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=51.11 E-value=48 Score=30.01 Aligned_cols=31 Identities=16% Similarity=0.038 Sum_probs=28.6
Q ss_pred HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 80 ~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
-.|..||..++ +.+-|+.+..+.+-+||.+.
T Consensus 232 tklv~CYL~~r-----------kpdlALnh~hrsI~lnP~~f 262 (569)
T PF15015_consen 232 TKLVTCYLRMR-----------KPDLALNHSHRSINLNPSYF 262 (569)
T ss_pred HHHHHhhhhcC-----------CCchHHHHHhhhhhcCcchh
Confidence 46889999998 99999999999999999987
No 407
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=49.14 E-value=1.4e+02 Score=24.55 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh-----CCCCHHHH---HHHHHHHHhCCCCccchhhhhcCHHHHHH
Q 030634 37 RWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DPAKHYTL---WSLGNAHTSCGFLTADLSEAKGDFDKASE 108 (174)
Q Consensus 37 ~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l-----dP~~~~a~---~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~ 108 (174)
..|..+..+-.+..+.+.....++|...|++|+++ .|.+|--+ .|.+..|+.. .++.++|+.
T Consensus 123 mKGDYyRYlaE~~~~~e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI----------~~~~~~A~~ 192 (244)
T smart00101 123 MKGDYHRYLAEFKTGAERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEI----------LNSPDRACN 192 (244)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHH----------cCCHHHHHH
Confidence 34666666655544444455678999999998864 57777532 3444443332 338888887
Q ss_pred HHHHHHH
Q 030634 109 CFQRAVD 115 (174)
Q Consensus 109 ~~~kAl~ 115 (174)
..++|+.
T Consensus 193 lAk~afd 199 (244)
T smart00101 193 LAKQAFD 199 (244)
T ss_pred HHHHHHH
Confidence 7777554
No 408
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=47.69 E-value=1.6e+02 Score=28.81 Aligned_cols=93 Identities=15% Similarity=0.078 Sum_probs=67.7
Q ss_pred hhhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 5 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 5 ~~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
.||=+..+--++=+.-++.-+.+++.+...+..|-.++...|++ ++--..-++..++.|..+..|.....
T Consensus 86 ~sD~s~~~~~~~ei~t~~ee~ai~~y~~~~~v~Li~llrk~~dl----------~kl~~ar~~~~~~~pl~~~lWl~Wl~ 155 (881)
T KOG0128|consen 86 DSDSSNEGGGNQEIRTLEEELAINSYKYAQMVQLIGLLRKLGDL----------EKLRQARLEMSEIAPLPPHLWLEWLK 155 (881)
T ss_pred cCCccccccchhHHHHHHHHhcccccchHHHHHHHHHHHHhcch----------HHHHHHHHHHHHhcCCChHHHHHHHH
Confidence 34445555677778888888999999999999999999999998 66666666777889999999887766
Q ss_pred HHHhCCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634 85 AHTSCGFLTADLSEAKGDFDKASECFQRAVD 115 (174)
Q Consensus 85 a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~ 115 (174)
-...+- ++ ++-.++...|++|+.
T Consensus 156 d~~~mt---~s-----~~~~~v~~~~ekal~ 178 (881)
T KOG0128|consen 156 DELSMT---QS-----EERKEVEELFEKALG 178 (881)
T ss_pred HHHhhc---cC-----cchhHHHHHHHHHhc
Confidence 544432 11 255666666777664
No 409
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=46.64 E-value=41 Score=17.24 Aligned_cols=27 Identities=19% Similarity=0.299 Sum_probs=21.1
Q ss_pred HHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 79 LWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 79 ~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
|..+=..|...| ++++|.+.|++..+.
T Consensus 3 ~n~li~~~~~~~-----------~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAG-----------RVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCC-----------CHHHHHHHHHHHHHc
Confidence 455666788888 999999999987653
No 410
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=46.27 E-value=48 Score=33.50 Aligned_cols=90 Identities=11% Similarity=0.083 Sum_probs=65.4
Q ss_pred HHhhhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh-----CC-
Q 030634 8 FDRLLLSEHNRKTAEANYAK--------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI-----DP- 73 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~--------~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l-----dP- 73 (174)
+.+++.+.+|+....+++-+ .|+....+.+++......+.. ..|+..+.+++.+ .|
T Consensus 983 ~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~----------~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen 983 SNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNL----------SGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred HhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCc----------cchhhhHHHHHHhhccccCCC
Confidence 45667777888777776653 466777888888777776665 6777777777655 34
Q ss_pred --CCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634 74 --AKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (174)
Q Consensus 74 --~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P 118 (174)
.-.....+++.++...+ +++.|+.+.+.|++++-
T Consensus 1053 hP~~a~~~~nle~l~~~v~-----------e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVE-----------EADTALRYLESALAKNK 1088 (1236)
T ss_pred CCchhhhhhHHHHHHhhHH-----------HHHHHHHHHHHHHHHHh
Confidence 33445678888887777 99999999999998653
No 411
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=44.75 E-value=57 Score=20.81 Aligned_cols=15 Identities=33% Similarity=0.370 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHhCC
Q 030634 59 NEAISKFEEALVIDP 73 (174)
Q Consensus 59 ~eAi~~lekAl~ldP 73 (174)
.+|+..|.++++..|
T Consensus 29 ~~ai~~l~~~~~~~~ 43 (69)
T PF04212_consen 29 KEAIEYLMQALKSES 43 (69)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHhccCC
Confidence 555555555555554
No 412
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=44.51 E-value=1.7e+02 Score=23.71 Aligned_cols=99 Identities=11% Similarity=-0.039 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCC-
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGF- 91 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~- 91 (174)
....|++.+..+.+ .+++++..++|.++..-...+.+ .-...+|...+.++-.+ .+.++-|+|...|+.-.+
T Consensus 88 ~l~~a~r~~~~aC~--~n~~~aC~~~gLl~~~g~~~r~~---dpd~~Ka~~y~traCdl--~~~~aCf~LS~m~~~g~~k 160 (248)
T KOG4014|consen 88 SLSKAIRPMKIACD--ANIPQACRYLGLLHWNGEKDRKA---DPDSEKAERYMTRACDL--EDGEACFLLSTMYMGGKEK 160 (248)
T ss_pred CHHHHHHHHHHHhc--cCCHHHHhhhhhhhccCcCCccC---CCCcHHHHHHHHHhccC--CCchHHHHHHHHHhccchh
Confidence 45677888887765 78899999999988653222111 11237899999988754 677888999888876421
Q ss_pred ------------CccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634 92 ------------LTADLSEAKGDFDKASECFQRAVDEEP 118 (174)
Q Consensus 92 ------------~~~~~~~a~~~~~~Ai~~~~kAl~l~P 118 (174)
++.+...-..+.++|.++--+|-+++-
T Consensus 161 ~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel~~ 199 (248)
T KOG4014|consen 161 FKTNAPGEGKPLDRAELGSLSKDMDKALQFAIKACELDI 199 (248)
T ss_pred hcccCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhcCC
Confidence 112233334577888888888877753
No 413
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=43.26 E-value=50 Score=24.26 Aligned_cols=33 Identities=27% Similarity=0.403 Sum_probs=27.2
Q ss_pred HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHH
Q 030634 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELY 123 (174)
Q Consensus 80 ~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y 123 (174)
..+|..+...| ++++|+.+|-+|+..-|+-...
T Consensus 67 V~lGE~L~~~G-----------~~~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 67 VQLGEQLLAQG-----------DYEEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHTT------------HHHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHhCC-----------CHHHHHHHHHHHHHhCCCHHHH
Confidence 46799998888 9999999999999998876633
No 414
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.82 E-value=1.2e+02 Score=30.78 Aligned_cols=76 Identities=14% Similarity=0.039 Sum_probs=56.7
Q ss_pred hhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCccc--------------------chhhhhhHHHHHHHHHHHH
Q 030634 10 RLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFES--------------------VSDSKKIINEAISKFEEAL 69 (174)
Q Consensus 10 ~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~--------------------~~~~~~~~~eAi~~lekAl 69 (174)
.+|.|..|...+++| ++...|-..+.++...++|+- -.++.|-++|-|..++.++
T Consensus 1232 ~LgeyQ~AVD~aRKA-----ns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1232 YLGEYQGAVDAARKA-----NSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred HHHHHHHHHHHhhhc-----cchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence 456677777766665 666777777777766555531 2245677899999999999
Q ss_pred HhCCCCHHHHHHHHHHHHhCC
Q 030634 70 VIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 70 ~ldP~~~~a~~~LG~a~~~lG 90 (174)
-+.--+...+..||..|.+-.
T Consensus 1307 GLERAHMgmfTELaiLYskyk 1327 (1666)
T KOG0985|consen 1307 GLERAHMGMFTELAILYSKYK 1327 (1666)
T ss_pred chhHHHHHHHHHHHHHHHhcC
Confidence 999999999999999998754
No 415
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=41.77 E-value=1.6e+02 Score=27.40 Aligned_cols=94 Identities=12% Similarity=0.074 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCc-ccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQF-ESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~-~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG 90 (174)
|+.+||+..+...-.+.|+-.......-.+....++. +++-..... -+-+...++.+-.|..+.-++-.-+.--+.+.
T Consensus 712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (831)
T PRK15180 712 GRLDEALSVLISLKRIEPDVSRLMREYKQIIRLFNESRKDGGSTITS-YEHLDYAKKLLVFDSENAYALKYAALNAMHLR 790 (831)
T ss_pred ccHHHHHHHHHhhhccCccHHHHHHHHHHHHHHhhhhcccCCcccch-hhhHhhhhhheeeccchHHHHHHHHhhHhHHH
Confidence 5778888888877788888766554433332221111 011011111 23344556667778888877644443333444
Q ss_pred CCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 91 FLTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 91 ~~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
+|.+|++++++.-+.|
T Consensus 791 -----------~~~~~~~~~~~~~~~~ 806 (831)
T PRK15180 791 -----------DYTQALQYWQRLEKVN 806 (831)
T ss_pred -----------HHHHHHHHHHHHHhcc
Confidence 9999999999987765
No 416
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.68 E-value=87 Score=29.63 Aligned_cols=79 Identities=22% Similarity=0.250 Sum_probs=49.1
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
.+..+|-|.....++|+++.|+.. -.+-+ .+++|++ +.|..+. ...++..=|-.||.+...
T Consensus 618 t~va~Fle~~g~~e~AL~~s~D~d-~rFel---al~lgrl----------~iA~~la-----~e~~s~~Kw~~Lg~~al~ 678 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALELSTDPD-QRFEL---ALKLGRL----------DIAFDLA-----VEANSEVKWRQLGDAALS 678 (794)
T ss_pred hhHHhHhhhccchHhhhhcCCChh-hhhhh---hhhcCcH----------HHHHHHH-----HhhcchHHHHHHHHHHhh
Confidence 344455555555555555544432 22222 2344555 6665533 345677788899999999
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHHHHhC
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRAVDEE 117 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~ 117 (174)
.| ++..|.+||.+|-.+.
T Consensus 679 ~~-----------~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 679 AG-----------ELPLASECFLRARDLG 696 (794)
T ss_pred cc-----------cchhHHHHHHhhcchh
Confidence 88 9999999999986543
No 417
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=41.59 E-value=42 Score=29.08 Aligned_cols=37 Identities=24% Similarity=0.393 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~ 121 (174)
++|+.+|++|++ ..+-| ..-+|+..|+.|+++-|+-+
T Consensus 17 kkA~~l~~~av~---------------~Eq~G-----------~l~dai~fYR~AlqI~~diE 53 (366)
T KOG2997|consen 17 KKAIALYEKAVL---------------KEQDG-----------SLYDAINFYRDALQIVPDIE 53 (366)
T ss_pred HHHHHHHHHHHH---------------HhhcC-----------cHHHHHHHHHhhhcCCchHH
Confidence 788888888765 34556 88999999999999999887
No 418
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=41.11 E-value=93 Score=30.13 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCH---------HHHHHHhcCCCChHHHHHHHHHHHhc
Q 030634 77 YTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------LYQKSLEVSTKAPELHMELHKHGINQ 147 (174)
Q Consensus 77 ~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~---------~y~~Al~l~~~~~~~~~~l~~~~~~~ 147 (174)
.|+.++|..+..+- .+++|.++|.+.-...-.-. ..+...+.-|++.++...++..+...
T Consensus 797 ~A~r~ig~~fa~~~-----------~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~sv 865 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMM-----------EWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSV 865 (1189)
T ss_pred HHHHHHHHHHHHHH-----------HHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhh
Confidence 57788888888766 78888888877544333222 22344455577766666666655544
Q ss_pred c
Q 030634 148 Q 148 (174)
Q Consensus 148 ~ 148 (174)
|
T Consensus 866 G 866 (1189)
T KOG2041|consen 866 G 866 (1189)
T ss_pred c
Confidence 4
No 419
>PRK15338 type III secretion system regulator InvE; Provisional
Probab=40.94 E-value=1.5e+02 Score=26.02 Aligned_cols=87 Identities=14% Similarity=0.066 Sum_probs=52.9
Q ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchh----hhhc---------------CHHHHHHHHHHHHHhCCCCH--
Q 030634 63 SKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLS----EAKG---------------DFDKASECFQRAVDEEPTNE-- 121 (174)
Q Consensus 63 ~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~----~a~~---------------~~~~Ai~~~~kAl~l~P~~~-- 121 (174)
..+..+++..|+.++.|..|..++..-. +.+... ++.. +..-..+.|.+.+.++|..-
T Consensus 110 ~ll~~arq~FpD~SDl~~aLreLl~r~k-L~~~~~~~le~al~~Le~e~~~K~ikAGINvAL~Ak~Fs~~~~lsa~~LR~ 188 (372)
T PRK15338 110 EFLRQARKLFPDPSDLVLVLRELLRRKQ-LEEIVRKKLESLLKHVEEETDPKTLKAGINCALKARLFGKALSLKPGLLRA 188 (372)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhCcc-CCHHHHHHHHHHHHHHHhhcCcHHHHhcCcHHHHHHHHHhhcCCCHHHHHH
Confidence 6677777777777777777777665321 110000 0000 11122234455555555544
Q ss_pred HHHHHHhcCCCChHHHHHHHHHHHhcccc
Q 030634 122 LYQKSLEVSTKAPELHMELHKHGINQQTL 150 (174)
Q Consensus 122 ~y~~Al~l~~~~~~~~~~l~~~~~~~~~~ 150 (174)
.||..+...-.....|..|...+..+.|-
T Consensus 189 lYR~Fl~~d~~~~~iY~~Wieeyg~~~R~ 217 (372)
T PRK15338 189 SYRQFLQSESHEVEIYSDWIASYGYQRRL 217 (372)
T ss_pred HHHHHHhccCcHHHHHHHHHHHhCccHHH
Confidence 89999999888888999999999777665
No 420
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=40.38 E-value=63 Score=21.56 Aligned_cols=39 Identities=13% Similarity=0.078 Sum_probs=21.0
Q ss_pred HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHH
Q 030634 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHY 77 (174)
Q Consensus 36 ~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~ 77 (174)
...|.-+-..|++ ..+...+.+||..|..+++..|+...
T Consensus 10 ~~~Ave~D~~g~y---~eAl~~Y~~aie~l~~~lk~e~d~~~ 48 (77)
T cd02683 10 LKRAVELDQEGRF---QEALVCYQEGIDLLMQVLKGTKDEAK 48 (77)
T ss_pred HHHHHHHHHhccH---HHHHHHHHHHHHHHHHHHhhCCCHHH
Confidence 3344445555555 12233346666666666777775544
No 421
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=39.81 E-value=65 Score=21.60 Aligned_cols=26 Identities=19% Similarity=0.261 Sum_probs=15.1
Q ss_pred HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (174)
Q Consensus 36 ~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l 71 (174)
...|.-+...|++ ++|+.+|.++++.
T Consensus 10 a~~Ave~D~~g~y----------~eA~~~Y~~aie~ 35 (76)
T cd02681 10 ARLAVQRDQEGRY----------SEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHccCH----------HHHHHHHHHHHHH
Confidence 3444444555665 7777777766653
No 422
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=38.39 E-value=1.7e+02 Score=23.66 Aligned_cols=79 Identities=16% Similarity=0.138 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHHhhCCC------CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC------HHHHH
Q 030634 13 LSEHNRKTAEANYAKDPL------DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK------HYTLW 80 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~------~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~------~~a~~ 80 (174)
+-...+..+.+|++.... -......+|.-|+..|++ ++|+..|+.+....-+. .....
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~----------~~A~~~l~~~~~~yr~egW~~l~~~~l~ 222 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDY----------DKALKLLEPAASSYRREGWWSLLTEVLW 222 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 444556666666654322 233456778888888888 99999999997664332 23455
Q ss_pred HHHHHHHhCCCCccchhhhhcCHHHHHHHHHH
Q 030634 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (174)
Q Consensus 81 ~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~k 112 (174)
.+-.|+..+| +.+..+.+.-+
T Consensus 223 ~l~~Ca~~~~-----------~~~~~l~~~le 243 (247)
T PF11817_consen 223 RLLECAKRLG-----------DVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHhC-----------CHHHHHHHHHH
Confidence 6677777777 77776665443
No 423
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=38.26 E-value=84 Score=25.49 Aligned_cols=52 Identities=15% Similarity=0.117 Sum_probs=30.0
Q ss_pred HhhhhHHHHHHHHHHHHh-----hCCCCHHH---HHHHHHHHHH-hcCcccchhhhhhHHHHHHHHHHHHH
Q 030634 9 DRLLLSEHNRKTAEANYA-----KDPLDADN---LTRWGEALLE-LSQFESVSDSKKIINEAISKFEEALV 70 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~-----~~P~~~~a---~~~lg~~l~~-~g~~~~~~~~~~~~~eAi~~lekAl~ 70 (174)
++...-+.|.+.|+.|+. +.|.+|.- ..+.++-+.. +|+. ++|+...++|+.
T Consensus 137 ~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~----------~~A~~ia~~afd 197 (236)
T PF00244_consen 137 EKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDP----------EKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-H----------HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCCh----------HHHHHHHHHHHH
Confidence 455556677777777766 46777753 3444544433 4444 666666666543
No 424
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=37.53 E-value=60 Score=22.00 Aligned_cols=18 Identities=6% Similarity=-0.079 Sum_probs=12.1
Q ss_pred hhHHHHHHHHHHHHhhCC
Q 030634 12 LLSEHNRKTAEANYAKDP 29 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P 29 (174)
+.|++|.....+++..+-
T Consensus 3 ~~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 3 GYYKQAFEEISKALRADE 20 (79)
T ss_pred hHHHHHHHHHHHHhhhhh
Confidence 457777777777766653
No 425
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=36.22 E-value=3.7e+02 Score=25.24 Aligned_cols=47 Identities=17% Similarity=0.093 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
+-|..+|+-.++..++++..-+..-.-+..+| +-..|...|++++..
T Consensus 418 ~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lN-----------dd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 418 ETAFRIFELGLKKFGDSPEYVLKYLDFLSHLN-----------DDNNARALFERVLTS 464 (656)
T ss_pred hHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-----------cchhHHHHHHHHHhc
Confidence 88999999999999999887666666677777 556666666666654
No 426
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=35.59 E-value=1e+02 Score=24.86 Aligned_cols=49 Identities=20% Similarity=0.176 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCC
Q 030634 59 NEAISKFEEALVIDPAK------HYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEP 118 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~------~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P 118 (174)
...|.++++|+....+. ...-+.+|.-|+..| ++++|+.+|+.+...-.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g-----------~~~~A~~~l~~~~~~yr 209 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLG-----------DYDKALKLLEPAASSYR 209 (247)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHH
Confidence 45566666666553322 123457899999998 99999999999855433
No 427
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=35.37 E-value=54 Score=28.43 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHhCCCCH------HHHHHHhcCCCChHHHHHH
Q 030634 102 DFDKASECFQRAVDEEPTNE------LYQKSLEVSTKAPELHMEL 140 (174)
Q Consensus 102 ~~~~Ai~~~~kAl~l~P~~~------~y~~Al~l~~~~~~~~~~l 140 (174)
.-++|+.+|++|++.+-+.. .|+.|+++.|+-.-.+..+
T Consensus 15 ~~kkA~~l~~~av~~Eq~G~l~dai~fYR~AlqI~~diEs~~r~l 59 (366)
T KOG2997|consen 15 LAKKAIALYEKAVLKEQDGSLYDAINFYRDALQIVPDIESKYRYL 59 (366)
T ss_pred HHHHHHHHHHHHHHHhhcCcHHHHHHHHHhhhcCCchHHHHHHHH
Confidence 56899999999999887765 8999999977665555533
No 428
>KOG4459 consensus Membrane-associated proteoglycan Leprecan [Function unknown]
Probab=35.34 E-value=68 Score=28.96 Aligned_cols=70 Identities=16% Similarity=0.033 Sum_probs=48.9
Q ss_pred hhhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 030634 5 QSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGN 84 (174)
Q Consensus 5 ~~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~ 84 (174)
|+-|-+.|.+..|+..+.-.+-.+|.+-.+..++-.=...+|.. + ..+..+.+.....+|.+|.
T Consensus 140 ~~ay~k~~~l~kAv~aa~tflv~~Pdde~ik~~ldyYq~~l~~s----------~------d~l~DlE~~~~~~~Fir~v 203 (471)
T KOG4459|consen 140 QFAYFKVGELEKAVAAAHTFLVANPDDEDIKQNLDYYQTMLGVS----------E------DELTDLERREHEQWFIRGV 203 (471)
T ss_pred HHHHHHhhhHHHHHHhcceeeecCCcHHHHHHHHHHHHhccCCC----------c------ccccccccchHHHHHHHHh
Confidence 44566677788888888777888899888888876655444443 1 1223456778888888888
Q ss_pred HHHhCC
Q 030634 85 AHTSCG 90 (174)
Q Consensus 85 a~~~lG 90 (174)
-++..+
T Consensus 204 ~~y~~~ 209 (471)
T KOG4459|consen 204 RLYSGE 209 (471)
T ss_pred hhcccc
Confidence 887766
No 429
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=35.30 E-value=2.2e+02 Score=26.67 Aligned_cols=64 Identities=17% Similarity=0.050 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHH
Q 030634 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC 109 (174)
Q Consensus 30 ~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~ 109 (174)
.+--+++.++.+|.+.+. ++=...+++..+.+-++...=-.|+..|.. + +-+++..+
T Consensus 97 e~kmal~el~q~y~en~n-----------~~l~~lWer~ve~dfnDvv~~ReLa~~yEk-i-----------k~sk~a~~ 153 (711)
T COG1747 97 ESKMALLELLQCYKENGN-----------EQLYSLWERLVEYDFNDVVIGRELADKYEK-I-----------KKSKAAEF 153 (711)
T ss_pred chHHHHHHHHHHHHhcCc-----------hhhHHHHHHHHHhcchhHHHHHHHHHHHHH-h-----------chhhHHHH
Confidence 445567777777777644 666778888888888888877777777766 5 77888888
Q ss_pred HHHHHHh
Q 030634 110 FQRAVDE 116 (174)
Q Consensus 110 ~~kAl~l 116 (174)
|.||+..
T Consensus 154 f~Ka~yr 160 (711)
T COG1747 154 FGKALYR 160 (711)
T ss_pred HHHHHHH
Confidence 8888853
No 430
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=33.58 E-value=1.3e+02 Score=21.49 Aligned_cols=42 Identities=21% Similarity=0.162 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHH
Q 030634 58 INEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQ 111 (174)
Q Consensus 58 ~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~ 111 (174)
....+..++.++..++.++..+..+..+|... +..+.+++++
T Consensus 23 ~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~~------------~~~~ll~~l~ 64 (140)
T smart00299 23 LEELIPYLESALKLNSENPALQTKLIELYAKY------------DPQKEIERLD 64 (140)
T ss_pred HHHHHHHHHHHHccCccchhHHHHHHHHHHHH------------CHHHHHHHHH
Confidence 38999999999999998888888999988875 3456666666
No 431
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=32.76 E-value=2.1e+02 Score=21.45 Aligned_cols=59 Identities=19% Similarity=0.160 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHhCCCCccchhhh
Q 030634 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK---------------HYTLWSLGNAHTSCGFLTADLSEA 99 (174)
Q Consensus 35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~---------------~~a~~~LG~a~~~lG~~~~~~~~a 99 (174)
+..+|..-.+.+++ -.+|-+|++|+.+..+- .-...||+..+...|
T Consensus 4 htllAd~a~~~~~~----------l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~g--------- 64 (140)
T PF10952_consen 4 HTLLADQAFKEADP----------LRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQG--------- 64 (140)
T ss_pred HHHHHHHHhhcccH----------HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcC---------
Confidence 34455555555555 66777777776552221 112357777777777
Q ss_pred hcCHHHHHHHHHHHH
Q 030634 100 KGDFDKASECFQRAV 114 (174)
Q Consensus 100 ~~~~~~Ai~~~~kAl 114 (174)
+.+=.++|++-|-
T Consensus 65 --d~~yELkYLqlAS 77 (140)
T PF10952_consen 65 --DSDYELKYLQLAS 77 (140)
T ss_pred --ChHHHHHHHHHHH
Confidence 8888888887643
No 432
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=31.70 E-value=1.2e+02 Score=29.72 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=36.0
Q ss_pred CChhhHHhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCc
Q 030634 3 FSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQF 48 (174)
Q Consensus 3 ~~~~~~~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~ 48 (174)
|-.|+|+--+..+.|++.|++|.+..|.--. =.|++.++...|+.
T Consensus 292 F~~S~ytDa~s~~~a~~WyrkaFeveP~~~s-GIN~atLL~aaG~~ 336 (1226)
T KOG4279|consen 292 FIASNYTDAESLNHAIEWYRKAFEVEPLEYS-GINLATLLRAAGEH 336 (1226)
T ss_pred hhccCCcchhhHHHHHHHHHHHhccCchhhc-cccHHHHHHHhhhh
Confidence 5568888889999999999999999997533 35677777777763
No 433
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.33 E-value=2.3e+02 Score=21.45 Aligned_cols=51 Identities=16% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHHhcCCCChHHHHHHHHH
Q 030634 80 WSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKH 143 (174)
Q Consensus 80 ~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al~l~~~~~~~~~~l~~~ 143 (174)
..+|..|...| +++++..|+-.||.+=|.-...-+.++.. -|+..+++..+
T Consensus 85 v~lGE~L~~qg-----------~~e~ga~h~~nAi~vcgqpaqLL~vlq~t--lp~~if~~i~~ 135 (143)
T KOG4056|consen 85 VQLGEELLAQG-----------NEEEGAEHLANAIVVCGQPAQLLQVLQQT--LPEAIFAMLLK 135 (143)
T ss_pred HHhHHHHHHcc-----------CHHHHHHHHHHHHhhcCCHHHHHHHHHhh--CCHHHHHHHHH
Confidence 46888999988 99999999999999999888666666542 34555544433
No 434
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=30.74 E-value=1.4e+02 Score=23.91 Aligned_cols=38 Identities=16% Similarity=0.144 Sum_probs=30.9
Q ss_pred HHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 40 EALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 40 ~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
.++++.|.| ++|.+.+++... ||++..-...|..+-..
T Consensus 119 ~VCm~~g~F----------k~A~eiLkr~~~-d~~~~~~r~kL~~II~~ 156 (200)
T cd00280 119 AVCMENGEF----------KKAEEVLKRLFS-DPESQKLRMKLLMIIRE 156 (200)
T ss_pred HHHHhcCch----------HHHHHHHHHHhc-CCCchhHHHHHHHHHHc
Confidence 467777888 999999999999 99998877777666544
No 435
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=30.50 E-value=2.2e+02 Score=26.66 Aligned_cols=71 Identities=14% Similarity=0.254 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634 35 LTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (174)
Q Consensus 35 ~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl 114 (174)
+..+|..+..+.+- ..++.+....+.-+.-....+...+.-+..+-..| ..++|-.+|++.+
T Consensus 8 ~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~ 69 (578)
T PRK15490 8 LAALGKTCLTLKQE-------KKLAQAVALIDSELPTEALTSLAMLKKAEFLHDVN-----------ETERAYALYETLI 69 (578)
T ss_pred HHHhhhHHHHHHHH-------hhHHHHHHHHHHhCCccchhHHHHHHHhhhhhhhh-----------hhHhHHHHHHHHH
Confidence 44566655554442 11255555555444434444455555566666666 8999999999999
Q ss_pred HhCCCCHHH
Q 030634 115 DEEPTNELY 123 (174)
Q Consensus 115 ~l~P~~~~y 123 (174)
..+|++..|
T Consensus 70 ~~~~~~~~~ 78 (578)
T PRK15490 70 AQNNDEARY 78 (578)
T ss_pred HhCCcchHH
Confidence 999998844
No 436
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=30.23 E-value=2.1e+02 Score=20.66 Aligned_cols=44 Identities=18% Similarity=0.193 Sum_probs=30.0
Q ss_pred HHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHH
Q 030634 16 HNRKTAEANYA--KDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL 69 (174)
Q Consensus 16 eAl~~~~~al~--~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl 69 (174)
.+...|..... +--..+..|..+|..+...|++ ++|.++|+++|
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~----------~~A~~I~~~Gi 126 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNF----------KKADEIYQLGI 126 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-H----------HHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCH----------HHHHHHHHhhC
Confidence 44455555544 3355677777777787777777 99999998875
No 437
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=30.12 E-value=87 Score=16.12 Aligned_cols=28 Identities=29% Similarity=0.297 Sum_probs=22.0
Q ss_pred HHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 78 TLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 78 a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
.|..+-.++.+.| +++.|...|+.-.+.
T Consensus 3 ty~~ll~a~~~~g-----------~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAG-----------DPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCC-----------CHHHHHHHHHHHHHh
Confidence 4566777888888 999999999886553
No 438
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=29.65 E-value=2.2e+02 Score=20.60 Aligned_cols=45 Identities=18% Similarity=0.168 Sum_probs=34.8
Q ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHH
Q 030634 59 NEAISKFEEAL--VIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAV 114 (174)
Q Consensus 59 ~eAi~~lekAl--~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl 114 (174)
.++...|+... .+--+.+..|...|..+...| ++++|.+.|+++|
T Consensus 80 ~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~-----------~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 80 SDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRG-----------NFKKADEIYQLGI 126 (126)
T ss_dssp SHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT------------HHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHhhC
Confidence 56777777665 455667777888888899988 9999999999875
No 439
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=29.50 E-value=92 Score=22.86 Aligned_cols=33 Identities=30% Similarity=0.428 Sum_probs=24.5
Q ss_pred HHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHH
Q 030634 36 TRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYT 78 (174)
Q Consensus 36 ~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a 78 (174)
..+|..++..|++ ++|+.+|-+||.+-|+-.+.
T Consensus 67 V~lGE~L~~~G~~----------~~aa~hf~nAl~V~~qP~~L 99 (121)
T PF02064_consen 67 VQLGEQLLAQGDY----------EEAAEHFYNALKVCPQPAEL 99 (121)
T ss_dssp HHHHHHHHHTT-H----------HHHHHHHHHHHHTSSSHHHH
T ss_pred HHHHHHHHhCCCH----------HHHHHHHHHHHHhCCCHHHH
Confidence 3467777777766 99999999999988876553
No 440
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.06 E-value=3.1e+02 Score=26.11 Aligned_cols=34 Identities=18% Similarity=0.148 Sum_probs=28.8
Q ss_pred CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh
Q 030634 28 DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI 71 (174)
Q Consensus 28 ~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l 71 (174)
..++..=|-.||.+-+..+++ ..|.+||.++-.+
T Consensus 662 e~~s~~Kw~~Lg~~al~~~~l----------~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 662 EANSEVKWRQLGDAALSAGEL----------PLASECFLRARDL 695 (794)
T ss_pred hhcchHHHHHHHHHHhhcccc----------hhHHHHHHhhcch
Confidence 457788899999999999998 9999999988543
No 441
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=28.80 E-value=2.7e+02 Score=25.67 Aligned_cols=75 Identities=15% Similarity=0.132 Sum_probs=54.0
Q ss_pred HHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhh
Q 030634 20 TAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEA 99 (174)
Q Consensus 20 ~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a 99 (174)
.++.-++-+|++.-.|+.|-.-+-..+.+ ++-.+.+++...-.|--+.+|...- .|+| |
T Consensus 30 rLRerIkdNPtnI~S~fqLiq~~~tq~s~----------~~~re~yeq~~~pfp~~~~aw~ly~-----s~EL------A 88 (660)
T COG5107 30 RLRERIKDNPTNILSYFQLIQYLETQESM----------DAEREMYEQLSSPFPIMEHAWRLYM-----SGEL------A 88 (660)
T ss_pred HHHHHhhcCchhHHHHHHHHHHHhhhhhH----------HHHHHHHHHhcCCCccccHHHHHHh-----cchh------h
Confidence 45667788999999999998888777777 8889999999988888888775321 1211 1
Q ss_pred hcCHHHHHHHHHHHHH
Q 030634 100 KGDFDKASECFQRAVD 115 (174)
Q Consensus 100 ~~~~~~Ai~~~~kAl~ 115 (174)
..+|..-...|.++|.
T Consensus 89 ~~df~svE~lf~rCL~ 104 (660)
T COG5107 89 RKDFRSVESLFGRCLK 104 (660)
T ss_pred hhhHHHHHHHHHHHHh
Confidence 2266666666666664
No 442
>COG0803 LraI ABC-type metal ion transport system, periplasmic component/surface adhesin [Inorganic ion transport and metabolism]
Probab=28.42 E-value=1.6e+02 Score=24.63 Aligned_cols=60 Identities=17% Similarity=0.052 Sum_probs=43.9
Q ss_pred CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHH
Q 030634 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASEC 109 (174)
Q Consensus 30 ~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~ 109 (174)
.||.+|+..-++. ..+...-+...++||++...|-.-+..|.. ++++..+.
T Consensus 131 ~dpH~Wldp~na~----------------~~v~~I~~~L~~~dP~~~~~y~~N~~~y~~-------------kL~~l~~~ 181 (303)
T COG0803 131 NDPHVWLDPKNAK----------------IYAENIADALVELDPENKETYEKNAEAYLK-------------KLNKLDEE 181 (303)
T ss_pred CCCCeecCHHHHH----------------HHHHHHHHHHHHhCcccHHHHHHHHHHHHH-------------HHHHHHHH
Confidence 4566666655554 455556677789999999998877777777 77777777
Q ss_pred HHHHHHhCC
Q 030634 110 FQRAVDEEP 118 (174)
Q Consensus 110 ~~kAl~l~P 118 (174)
++..++--|
T Consensus 182 ~~~~~~~~~ 190 (303)
T COG0803 182 AKAKLSKIP 190 (303)
T ss_pred HHHHHhcCC
Confidence 777777666
No 443
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=28.13 E-value=2.8e+02 Score=23.78 Aligned_cols=69 Identities=10% Similarity=0.039 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH---hcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 030634 13 LSEHNRKTAEANYAKDPLDADNLTRWGEALLE---LSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNA 85 (174)
Q Consensus 13 ~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~---~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a 85 (174)
.+.+-++....++.-||.|..+|.+.-..... .|+. ..++.+++-+...-.++-.+|++..+|..+-.+
T Consensus 165 ~~k~e~eytt~~I~tdi~N~SaW~~r~~~~~~~~~~~~v----isqk~l~~eL~~i~~~if~~p~~~S~w~y~r~~ 236 (328)
T COG5536 165 DLKHELEYTTSLIETDIYNNSAWHHRYIWIERRFNRGDV----ISQKYLEKELEYIFDKIFTDPDNQSVWGYLRGV 236 (328)
T ss_pred hHHHHHHhHHHHHhhCCCChHHHHHHHHHHHHHHhhccc----chHHHHHHHHHHHHhhhhcCccccchhhHHHHH
Confidence 34455778888899999999999988443332 3333 223347888999999999999999998765444
No 444
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=27.97 E-value=2e+02 Score=27.56 Aligned_cols=46 Identities=20% Similarity=0.267 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Q 030634 30 LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDP-AKHYTLWSLGNA 85 (174)
Q Consensus 30 ~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP-~~~~a~~~LG~a 85 (174)
+---+|..||.++++++++ ..|...|.+++++.- +-|+..+.+-+.
T Consensus 585 D~f~aW~AWGlA~Lk~e~~----------aaAR~KFkqafklkgedipdvi~diin~ 631 (1141)
T KOG1811|consen 585 DTFGAWHAWGLACLKAENL----------AAAREKFKQAFKLKGEDIPDVIFDIINL 631 (1141)
T ss_pred CcccHHHHHHHHHHHhhhH----------HHHHHHHHHHhCCCCCccchHHHHHHHh
Confidence 3456899999999999998 999999999999863 344555555443
No 445
>PRK15326 type III secretion system needle complex protein PrgI; Provisional
Probab=27.26 E-value=2.1e+02 Score=19.56 Aligned_cols=55 Identities=15% Similarity=0.180 Sum_probs=32.6
Q ss_pred hhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHH
Q 030634 12 LLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEAL 69 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl 69 (174)
+....+++.+.++++.+|+||..+..+-... ++|.-....++..-++++-..++|
T Consensus 21 ~~~~~~l~~Al~~l~~~pdnP~~LA~~Qa~l---~eyn~~RNaQSn~iKa~KD~~~aI 75 (80)
T PRK15326 21 DNLQTQVTEALDKLAAKPSDPALLAAYQSKL---SEYNLYRNAQSNTVKVFKDIDAAI 75 (80)
T ss_pred HHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778888888999999998866555443 333222223333344444444433
No 446
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=26.72 E-value=4.5e+02 Score=23.21 Aligned_cols=49 Identities=12% Similarity=0.066 Sum_probs=35.3
Q ss_pred hhhHHHHHHHHHHHHhhCC-----CCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHH
Q 030634 11 LLLSEHNRKTAEANYAKDP-----LDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEE 67 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P-----~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lek 67 (174)
...|..|.+.++.+....+ ...+.+..+..+|.....| .+++|...+++
T Consensus 143 ~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~f--------d~~~A~~~L~~ 196 (380)
T TIGR02710 143 AFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRF--------EHEEALDYLND 196 (380)
T ss_pred hcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHcc--------CHHHHHHHHhh
Confidence 4578889999999988764 2345667778888777665 23777777774
No 447
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=26.62 E-value=2.4e+02 Score=24.67 Aligned_cols=50 Identities=10% Similarity=0.154 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCC---CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC
Q 030634 59 NEAISKFEEALVIDPA---KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT 119 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~---~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~ 119 (174)
++....+...++.-|+ .+..|.-++.+....| .++..+.+|++|+.....
T Consensus 120 eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~-----------~~e~vi~iyEeAi~agAq 172 (353)
T PF15297_consen 120 EEILATLSDLIKNIPDAKKLAKYWICLARLEPRTG-----------PIEDVIAIYEEAILAGAQ 172 (353)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcC-----------CHHHHHHHHHHHHHcCCC
Confidence 6777888888888776 5578999999999988 999999999999987665
No 448
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.36 E-value=5.3e+02 Score=23.98 Aligned_cols=77 Identities=19% Similarity=0.171 Sum_probs=57.6
Q ss_pred hhHHHHHHHHHHHHhhC---CCCH----HHHHHHHHHHHHhcC-cccchhhhhhHHHHHHHHHHHHHhCCCCHHHH----
Q 030634 12 LLSEHNRKTAEANYAKD---PLDA----DNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTL---- 79 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~---P~~~----~a~~~lg~~l~~~g~-~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~---- 79 (174)
.+++.|...++++..+- |+.. ++...++.++....+ + ..|...+++++++.-..|-+.
T Consensus 61 ~N~elAksHLekA~~i~~~ip~fydvKf~a~SlLa~lh~~~~~s~----------~~~KalLrkaielsq~~p~wsckll 130 (629)
T KOG2300|consen 61 KNVELAKSHLEKAWLISKSIPSFYDVKFQAASLLAHLHHQLAQSF----------PPAKALLRKAIELSQSVPYWSCKLL 130 (629)
T ss_pred ccHHHHHHHHHHHHHHHcccccHHhhhhHHHHHHHHHHHHhcCCC----------chHHHHHHHHHHHhcCCchhhHHHH
Confidence 46788888999988874 4442 355667778877764 5 788999999999988887543
Q ss_pred HHHHHHHHhCCCCccchhhhhcCHHHHHHH
Q 030634 80 WSLGNAHTSCGFLTADLSEAKGDFDKASEC 109 (174)
Q Consensus 80 ~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~ 109 (174)
+.|+..+.... ++..|++.
T Consensus 131 fQLaql~~idk-----------D~~sA~el 149 (629)
T KOG2300|consen 131 FQLAQLHIIDK-----------DFPSALEL 149 (629)
T ss_pred HHHHHHHhhhc-----------cchhHHHH
Confidence 56777776655 88888887
No 449
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=26.25 E-value=5.5e+02 Score=24.06 Aligned_cols=64 Identities=14% Similarity=0.110 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 15 EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 15 ~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
+.+...|...+...|.--..|-..|..-..+|.. +++++.|+++++--|-....|...-.....
T Consensus 62 ~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~----------~~s~~Vfergv~aip~SvdlW~~Y~~f~~n 125 (577)
T KOG1258|consen 62 DALREVYDIFLSKYPLCYGYWKKFADYEYKLGNA----------ENSVKVFERGVQAIPLSVDLWLSYLAFLKN 125 (577)
T ss_pred HHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhH----------HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 4556667777777888888888888888887777 999999999999999888888776554433
No 450
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=25.68 E-value=2e+02 Score=23.63 Aligned_cols=40 Identities=13% Similarity=0.081 Sum_probs=22.4
Q ss_pred HhhhhHHHHHHHHHHHHh-----hCCCCHHHH---HHHHHHHHHh-cCc
Q 030634 9 DRLLLSEHNRKTAEANYA-----KDPLDADNL---TRWGEALLEL-SQF 48 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~-----~~P~~~~a~---~~lg~~l~~~-g~~ 48 (174)
++-..-+.|.+.|+.|++ +.|.+|.-+ .|.++.+... ++.
T Consensus 139 e~~~~~~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~ 187 (244)
T smart00101 139 ERKEAAENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSP 187 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCH
Confidence 333456677777777776 457777532 3444444443 444
No 451
>TIGR02996 rpt_mate_G_obs repeat-companion domain TIGR02996. This model describes an abundant paralogous domain of Gemmata obscuriglobus UQM 2246, a member of the Planctomycetes. The domain also occurs, although rarely, in Myxococcus xanthus DK 1622 and related species. Most member proteins have extensive repeats similar to the leucine-rich repeat, or another repeat class or region of low-complexity sequence. This domain is not repeated, and in Gemmata is usually found at the protein N-terminus.
Probab=25.34 E-value=1.6e+02 Score=17.62 Aligned_cols=30 Identities=13% Similarity=-0.003 Sum_probs=26.4
Q ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHhcCc
Q 030634 19 KTAEANYAKDPLDADNLTRWGEALLELSQF 48 (174)
Q Consensus 19 ~~~~~al~~~P~~~~a~~~lg~~l~~~g~~ 48 (174)
..+..++..+|.+...+...+-.+.+.|+.
T Consensus 3 ~all~AI~~~P~ddt~RLvYADWL~e~gdp 32 (42)
T TIGR02996 3 EALLRAILAHPDDDTPRLVYADWLDEHGDP 32 (42)
T ss_pred HHHHHHHHhCCCCcchHHHHHHHHHHcCCH
Confidence 356788899999999999999999998886
No 452
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.85 E-value=2.8e+02 Score=20.15 Aligned_cols=54 Identities=15% Similarity=0.077 Sum_probs=40.8
Q ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 030634 63 SKFEEALVI-DPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSL 127 (174)
Q Consensus 63 ~~lekAl~l-dP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~~~~y~~Al 127 (174)
+.++++-.. -|--|..|-.||..|...| +.+.|..-|+.--.+-|++..|...|
T Consensus 58 ~~~ek~~ak~~~vpPG~HAhLGlLys~~G-----------~~e~a~~eFetEKalFPES~~fmDFL 112 (121)
T COG4259 58 KYLEKIGAKNGAVPPGYHAHLGLLYSNSG-----------KDEQAVREFETEKALFPESGVFMDFL 112 (121)
T ss_pred HHHHHHhhcCCCCCCcHHHHHHHHHhhcC-----------ChHHHHHHHHHhhhhCccchhHHHHH
Confidence 344554433 3445677889999999999 99999999999888888887665544
No 453
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=24.40 E-value=1.5e+02 Score=26.76 Aligned_cols=36 Identities=22% Similarity=0.160 Sum_probs=29.4
Q ss_pred CHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCH
Q 030634 31 DADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKH 76 (174)
Q Consensus 31 ~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~ 76 (174)
.+..++.+|.+..-.++| ..|.++|-+|+...|++.
T Consensus 246 ~ARY~yY~GrIkaiqldY----------ssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 246 WARYLYYLGRIKAIQLDY----------SSALEYFLQALRKAPQHA 281 (493)
T ss_pred HHHHHHHHhhHHHhhcch----------hHHHHHHHHHHHhCcchh
Confidence 455667778887777777 999999999999999844
No 454
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=24.38 E-value=3.9e+02 Score=26.15 Aligned_cols=37 Identities=27% Similarity=0.260 Sum_probs=26.3
Q ss_pred HHHHHHhCCCCHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHH
Q 030634 65 FEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQR 112 (174)
Q Consensus 65 lekAl~ldP~~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~k 112 (174)
++...+.-|+++..+--+|.++...| --++|.++|.+
T Consensus 841 LE~la~~Lpe~s~llp~~a~mf~svG-----------MC~qAV~a~Lr 877 (1189)
T KOG2041|consen 841 LEVLARTLPEDSELLPVMADMFTSVG-----------MCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHhcCcccchHHHHHHHHHhhc-----------hHHHHHHHHHh
Confidence 44555667888888888899888888 55555555543
No 455
>PF03039 IL12: Interleukin-12 alpha subunit; InterPro: IPR004281 Interleukin 12 (IL-12) is a disulphide-bonded heterodimer consisting of a 35kDa alpha subunit and a 40kDa beta subunit. It is involved in the stimulation and maintenance of Th1 cellular immune responses, including the normal host defence against various intracellular pathogens, such as Leishmania, Toxoplasma, Measles virus and Human immunodeficiency virus 1 (HIV). IL-12 also has an important role in pathological Th1 responses, such as in inflammatory bowel disease and multiple sclerosis. Suppression of IL-12 activity in such diseases may have therapeutic benefit. On the other hand, administration of recombinant IL-12 may have therapeutic benefit in conditions associated with pathological Th2 responses [, ].; GO: 0005143 interleukin-12 receptor binding, 0008083 growth factor activity, 0006955 immune response, 0005576 extracellular region; PDB: 3HMX_B 1F45_B.
Probab=23.45 E-value=1.5e+02 Score=24.00 Aligned_cols=64 Identities=11% Similarity=0.269 Sum_probs=33.3
Q ss_pred hhhhcCHHHHHHHHHHHHHhCCCCHH------------HHHHHhcCCCChHHHHHHHHHHHhccccCCCCchhhHHHHHH
Q 030634 97 SEAKGDFDKASECFQRAVDEEPTNEL------------YQKSLEVSTKAPELHMELHKHGINQQTLGGGSSASSAQVNFC 164 (174)
Q Consensus 97 ~~a~~~~~~Ai~~~~kAl~l~P~~~~------------y~~Al~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (174)
+|....|...++.+.+.+-.+|+... ..+++..+. . -..|.....+|++-+.-..+|
T Consensus 128 yEDLk~Y~~efka~~~~ll~~p~~qi~Ld~~mL~aIdeLmQaLn~ns----------e-tvpqk~sl~e~d~Yk~rlKLC 196 (219)
T PF03039_consen 128 YEDLKMYQAEFKAINKKLLMDPERQISLDQNMLAAIDELMQALNFNS----------E-TVPQKPSLEEPDFYKTRLKLC 196 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHCCSTT---SHHHHHHHHHHHHHHHH----------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHhhcCchhhhhhhHHHHHHHHHHHHHcCCCC----------C-CCCCCCCcCCCCcHHHHHHHH
Confidence 34445888899989888888998772 222222211 0 012222255688999999999
Q ss_pred HHHhhhc
Q 030634 165 ICVHQMK 171 (174)
Q Consensus 165 ~~~~~~~ 171 (174)
+.+|-..
T Consensus 197 ilLhaF~ 203 (219)
T PF03039_consen 197 ILLHAFR 203 (219)
T ss_dssp HHHHHHH
T ss_pred HHHhhhe
Confidence 9999643
No 456
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=23.42 E-value=2.1e+02 Score=26.67 Aligned_cols=38 Identities=21% Similarity=0.159 Sum_probs=18.3
Q ss_pred hHHhhhhHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHH
Q 030634 7 DFDRLLLSEHNRKTAEANYAK---DPLDADNLTRWGEALLE 44 (174)
Q Consensus 7 ~~~~~~~~~eAl~~~~~al~~---~P~~~~a~~~lg~~l~~ 44 (174)
.+.++.+.++-.+....+++. +.+++.+...++.+.-.
T Consensus 213 e~~rLsn~ekl~~~~~~a~~~L~ge~~~~~~~~~l~~a~~~ 253 (557)
T COG0497 213 ERKRLSNSEKLAEAIQNALELLSGEDDTVSALSLLGRALEA 253 (557)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHH
Confidence 345555555555555555543 22234445555444433
No 457
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=22.95 E-value=1e+03 Score=26.46 Aligned_cols=94 Identities=13% Similarity=0.039 Sum_probs=61.3
Q ss_pred hhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCC-----------HHHH
Q 030634 11 LLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAK-----------HYTL 79 (174)
Q Consensus 11 ~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~-----------~~a~ 79 (174)
=|+++.|-.+.-+|.+.. -+++..-.|..+...|+. ..|+..+++.++++-.+ ....
T Consensus 1683 aG~~q~A~nall~A~e~r--~~~i~~E~AK~lW~~gd~----------~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~ 1750 (2382)
T KOG0890|consen 1683 AGHLQRAQNALLNAKESR--LPEIVLERAKLLWQTGDE----------LNALSVLQEILSKNFPDLHTPYTDTPQSVNLL 1750 (2382)
T ss_pred cccHHHHHHHHHhhhhcc--cchHHHHHHHHHHhhccH----------HHHHHHHHHHHHhhcccccCCccccchhhhhh
Confidence 357777877777777666 677888899999999888 99999999999764333 1111
Q ss_pred HHHHHHHHhCCCCccchhhhhc--CHHHHHHHHHHHHHhCCCCH
Q 030634 80 WSLGNAHTSCGFLTADLSEAKG--DFDKASECFQRAVDEEPTNE 121 (174)
Q Consensus 80 ~~LG~a~~~lG~~~~~~~~a~~--~~~~Ai~~~~kAl~l~P~~~ 121 (174)
.-+.+....+ .+-+..+ .-++-+.+|+.+.++.|...
T Consensus 1751 -i~~~~~L~~~----~~~~es~n~~s~~ilk~Y~~~~ail~ewe 1789 (2382)
T KOG0890|consen 1751 -IFKKAKLKIT----KYLEESGNFESKDILKYYHDAKAILPEWE 1789 (2382)
T ss_pred -hhhhHHHHHH----HHHHHhcchhHHHHHHHHHHHHHHccccc
Confidence 1111222221 1111111 34567889999999999554
No 458
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.78 E-value=6.9e+02 Score=23.66 Aligned_cols=100 Identities=15% Similarity=0.169 Sum_probs=66.1
Q ss_pred HHhhhhHHHHHHHHHHHHhh------------CCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHh----
Q 030634 8 FDRLLLSEHNRKTAEANYAK------------DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVI---- 71 (174)
Q Consensus 8 ~~~~~~~~eAl~~~~~al~~------------~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~l---- 71 (174)
|+....|++|-..|..++.. .|.+.+.+..++.++..+|+.+.+ .+-++.++-.|++|+.-
T Consensus 248 ~~hs~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~a---adLieR~Ly~~d~a~hp~F~~ 324 (665)
T KOG2422|consen 248 FEHSNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMA---ADLIERGLYVFDRALHPNFIP 324 (665)
T ss_pred eecchHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhH---HHHHHHHHHHHHHHhcccccc
Confidence 44455666777777666653 688889999999999999988332 33456777777777642
Q ss_pred ----------CCCCHHHHHH---HHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHhCCC-CH
Q 030634 72 ----------DPAKHYTLWS---LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPT-NE 121 (174)
Q Consensus 72 ----------dP~~~~a~~~---LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l~P~-~~ 121 (174)
.|.|-..|.. --.-+...| =+.-|.++.+-.+.++|. ++
T Consensus 325 ~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RG-----------C~rTA~E~cKlllsLdp~eDP 377 (665)
T KOG2422|consen 325 FSGNCRLPYIYPENRQFYLALFRYMQSLAQRG-----------CWRTALEWCKLLLSLDPSEDP 377 (665)
T ss_pred ccccccCcccchhhHHHHHHHHHHHHHHHhcC-----------ChHHHHHHHHHHhhcCCcCCc
Confidence 2222222211 112223444 689999999999999998 66
No 459
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=21.30 E-value=4.5e+02 Score=25.93 Aligned_cols=77 Identities=17% Similarity=0.185 Sum_probs=50.1
Q ss_pred hhHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhCC
Q 030634 12 LLSEHNRKTAEANYAKD-PLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCG 90 (174)
Q Consensus 12 ~~~~eAl~~~~~al~~~-P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~lG 90 (174)
|.-+.|+.....+++.. |-.|+.+..-|++|-.+= +.....+.+-.+.|++-|++|.+..|..... .|++..+...|
T Consensus 257 GDRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF-~~S~ytDa~s~~~a~~WyrkaFeveP~~~sG-IN~atLL~aaG 334 (1226)
T KOG4279|consen 257 GDRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMF-IASNYTDAESLNHAIEWYRKAFEVEPLEYSG-INLATLLRAAG 334 (1226)
T ss_pred ccHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhh-hccCCcchhhHHHHHHHHHHHhccCchhhcc-ccHHHHHHHhh
Confidence 45566777776776655 557888888888884430 1112223344589999999999999985543 35555555555
No 460
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=21.03 E-value=1.3e+02 Score=24.62 Aligned_cols=21 Identities=10% Similarity=0.196 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHhCCCCH
Q 030634 56 KIINEAISKFEEALVIDPAKH 76 (174)
Q Consensus 56 ~~~~eAi~~lekAl~ldP~~~ 76 (174)
+....|+.++++|+++||+..
T Consensus 192 ~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred ccHHHHHHHHHHHHHhCCCCC
Confidence 455899999999999999853
No 461
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=20.81 E-value=3.4e+02 Score=23.71 Aligned_cols=59 Identities=20% Similarity=0.356 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHHHHh--CCC---------------CHHHHHHHHHHHHhCCCCccchhhhhcCHHHHHHHHHHHHHh
Q 030634 56 KIINEAISKFEEALVI--DPA---------------KHYTLWSLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDE 116 (174)
Q Consensus 56 ~~~~eAi~~lekAl~l--dP~---------------~~~a~~~LG~a~~~lG~~~~~~~~a~~~~~~Ai~~~~kAl~l 116 (174)
..+..||..|+.-+.. +|+ -..|++.+|.+|.+. .+++..+-.+...+++.+|+..+..
T Consensus 263 ~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~--~~~~~~~~~~~l~~sl~~y~~vv~y 338 (371)
T PF12309_consen 263 QLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKL--ITSDPKEQLENLEKSLEYYKWVVDY 338 (371)
T ss_pred HHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccc--cCCChHHHHHHHHHHHHHHHHHHHH
Confidence 4468899999988876 444 124778888888775 2456666777899999999998865
No 462
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=20.14 E-value=3.2e+02 Score=31.22 Aligned_cols=92 Identities=16% Similarity=0.109 Sum_probs=0.0
Q ss_pred HhhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcCcccchhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 9 DRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 9 ~~~~~~~eAl~~~~~al~~~P~~~~a~~~lg~~l~~~g~~~~~~~~~~~~~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
.+++.+++|-+.|..|+.++-+-+.+|..||.-+... +..-..+...-..|+.||-+|....-..-.--+..-..+..
T Consensus 2823 ~kL~~~eeAn~~fs~AvQi~~~l~KaW~~Wg~y~~~~--f~~e~~ni~~a~~avsCyLqA~~~~~~skaRk~iakvLwLl 2900 (3550)
T KOG0889|consen 2823 EKLGKFEEANKAFSAAVQIDDGLGKAWAEWGKYLDNR--FNKEPVNISFACNAVSCYLQAARLYNSSKARKLIAKVLWLL 2900 (3550)
T ss_pred HHhcCcchhHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhccCcccHHHHHHHHHHHHHhccccchhhHHHHHHHHHHH
Q ss_pred CCCCccchhhhhcCHHHHHHHHHHHHH
Q 030634 89 CGFLTADLSEAKGDFDKASECFQRAVD 115 (174)
Q Consensus 89 lG~~~~~~~~a~~~~~~Ai~~~~kAl~ 115 (174)
.++.|..-.-++++
T Consensus 2901 -------------s~dda~~~l~~~~~ 2914 (3550)
T KOG0889|consen 2901 -------------SFDDSLGTLGDVFD 2914 (3550)
T ss_pred -------------HhccccchHHHHHH
No 463
>PF12583 TPPII_N: Tripeptidyl peptidase II N terminal; InterPro: IPR022232 This entry represents a region of approximately 190 amino acids in length and is found in association with PF00082 from PFAM. The members are serine peptidases belonging to MEROPS peptidase family S8A, tripeptidyl peptidase II (TPPII), clan SB. They are a crucial component of the proteolytic cascade acting downstream of the 26S proteasome in the ubiquitin-proteasome pathway. It is an amino peptidase belonging to the subtilase family removing tripeptides from the free N terminus of oligopeptides. ; PDB: 3LXU_X.
Probab=20.06 E-value=3.3e+02 Score=20.55 Aligned_cols=30 Identities=20% Similarity=0.155 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Q 030634 59 NEAISKFEEALVIDPAKHYTLWSLGNAHTS 88 (174)
Q Consensus 59 ~eAi~~lekAl~ldP~~~~a~~~LG~a~~~ 88 (174)
+.|..+|++.++..|++..+|..+-..+-.
T Consensus 93 e~Ae~vY~el~~~~P~HLpaHla~i~~lDS 122 (139)
T PF12583_consen 93 ENAEQVYEELLEAHPDHLPAHLAMIQNLDS 122 (139)
T ss_dssp HHHHHHHHHHHHH-TT-THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcchHHHHHHHHHccCc
Confidence 889999999999999999999887665543
Done!