Query 030634
Match_columns 174
No_of_seqs 142 out of 1186
Neff 7.1
Searched_HMMs 29240
Date Tue Mar 26 18:18:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/030634.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2337-2341//hhsearch_pdb/030634hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zu2_A Mitochondrial import re 1.0 1 1 184.0 11.2 144 1-145 6-149 (158)
2 4gyw_A UDP-N-acetylglucosamine 1.0 1 1 139.7 17.1 123 7-150 18-161 (723)
3 2h6f_A Protein farnesyltransfe 1.0 1 1 132.4 14.7 144 8-172 107-289 (382)
4 4gyw_A UDP-N-acetylglucosamine 1.0 1 1 131.2 14.1 123 28-171 5-159 (723)
5 2pl2_A Hypothetical conserved 1.0 1 1 127.4 15.2 155 7-172 14-200 (217)
6 2pzi_A Probable serine/threoni 1.0 1 1 123.8 15.2 141 10-171 403-582 (681)
7 2h6f_A Protein farnesyltransfe 1.0 1 1 122.9 16.2 142 8-170 141-322 (382)
8 4ga2_A E3 SUMO-protein ligase 1.0 1 1 118.5 11.3 121 8-149 7-149 (150)
9 2pzi_A Probable serine/threoni 1.0 1 1 118.4 8.0 121 7-149 442-583 (681)
10 4abn_A Tetratricopeptide repea 1.0 1 1 115.8 13.5 151 8-171 112-306 (474)
No 1
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=1.00 E-value=1 Score=183.98 Aligned_cols=144 Identities=58% Similarity=0.921 Sum_probs=139.7
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 98876368864669999999999995099999999999999999337543001131099999999999973999999999
Q 030634 1 MEFSQSDFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLW 80 (174)
Q Consensus 1 ~~~~~~~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~ 80 (174)
|++ |.|++|++.|++|++.++++++++|+++++|++||.++..+++++.+.++.+.+++||..|++|++++|+++++|+
T Consensus 6 ~~~-~~~~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~ 84 (158)
T 1zu2_A 6 MDT-ETEFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVW 84 (158)
T ss_dssp CSC-CCSHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred CCC-CCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
T ss_conf 546-4579998679999999999998788889999999999998603010135676799999999999986967689999
Q ss_pred HHHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 99999985897765626642599999999999998499989999999509999488999999987
Q 030634 81 SLGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNELYQKSLEVSTKAPELHMELHKHGI 145 (174)
Q Consensus 81 nLG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~~~~~Al~~~~~~~~~~~~L~~~~~ 145 (174)
++|++|..+|+++|.++++.+++++|+.+|++|++++|++..|++++++.+++|++|+++++.++
T Consensus 85 ~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~el~~~~~~~~~ 149 (158)
T 1zu2_A 85 CIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLHAEAYKQGL 149 (158)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCHHCCCCCCCCCC
T ss_conf 98899997065476425554149999999999998688989999999989867760372030214
No 2
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=1.00 E-value=1 Score=139.66 Aligned_cols=123 Identities=18% Similarity=0.187 Sum_probs=118.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 68864669999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~ 86 (174)
-|.+++.+++|+..++++++++|+++.+++++|.++..+|++ ++|+..|++|++++|+++.+|+++|.++
T Consensus 18 ~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~----------~eA~~~~~~Al~l~P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 18 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKL----------QEALMHYKEAIRISPTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999869999999999999986899899999999999986999----------9999999999980999899999999999
Q ss_pred HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 85897765626642599999999999998499989---------------------999999509999488999999987
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (174)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~~ 145 (174)
..+| ++++|+++|++|++++|++. .|+++++++|..+.++.+|+.++.
T Consensus 88 ~~~g-----------~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~ 156 (723)
T 4gyw_A 88 KEMQ-----------DVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQ 156 (723)
T ss_dssp HHTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred HHCC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9849-----------99999999999998099989999999999998699999999999999739998577740556777
Q ss_pred HCCCC
Q ss_conf 12125
Q 030634 146 NQQTL 150 (174)
Q Consensus 146 ~~~~~ 150 (174)
.+++.
T Consensus 157 ~~g~~ 161 (723)
T 4gyw_A 157 IVCDW 161 (723)
T ss_dssp HTTCC
T ss_pred HCCCH
T ss_conf 40149
No 3
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=1.00 E-value=1 Score=132.43 Aligned_cols=144 Identities=10% Similarity=-0.042 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8864669999999999995099999999999999999337-543001131099999999999973999999999999999
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQ-FESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 8 ~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~-~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~ 86 (174)
+.+++.+++|+..+++++.++|++..+|+++|.++..+++ + ++|+..|+++++++|+++.+|+++|.++
T Consensus 107 ~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~----------~eAl~~~~~al~l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 107 LQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL----------HEEMNYITAIIEEQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 997798599999999999869327999999999999826479----------9999999999987887899999999999
Q ss_pred HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 85897765626642599999999999998499989---------------------999999509999488999999987
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (174)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~~ 145 (174)
..+| ++++|+.+|+++++++|++. .|+++++++|..+.++.+++.++.
T Consensus 177 ~~~g-----------~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~ 245 (382)
T 2h6f_A 177 EWLR-----------DPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVIS 245 (382)
T ss_dssp HHHT-----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHCC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 9846-----------88999999999998585589999999999998177399999999999868899999999999999
Q ss_pred H-CCCC----------------CCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 1-2125----------------8998604678999999842000
Q 030634 146 N-QQTL----------------GGGSSASSAQVNFCICVHQMKM 172 (174)
Q Consensus 146 ~-~~~~----------------~~~~~~~~~~~~~~~~~~~~~~ 172 (174)
. .+.. ...|+..++.++.+.++..+++
T Consensus 246 ~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~ 289 (382)
T 2h6f_A 246 NTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGL 289 (382)
T ss_dssp HTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCG
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCC
T ss_conf 84175267889999999999998788998999999999973696
No 4
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=1.00 E-value=1 Score=131.25 Aligned_cols=123 Identities=18% Similarity=0.251 Sum_probs=77.7
Q ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCHHHHHCCHHHHH
Q ss_conf 99999999999999999337543001131099999999999973999999999999999858977656266425999999
Q 030634 28 DPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHTSCGFLTADLSEAKGDFDKAS 107 (174)
Q Consensus 28 ~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~~~g~~~~~~~~~~~~~~eA~ 107 (174)
.|+++++++++|.++..+|++ ++|+..|++|++++|+++.+|+++|.++..+| ++++|+
T Consensus 5 ~P~~a~al~nLG~~~~~~G~~----------~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g-----------~~~eA~ 63 (723)
T 4gyw_A 5 CPTHADSLNNLANIKREQGNI----------EEAVRLYRKALEVFPEFAAAHSNLASVLQQQG-----------KLQEAL 63 (723)
T ss_dssp -CHHHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTT-----------CHHHHH
T ss_pred CCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCC-----------CHHHHH
T ss_conf 987199999999999986999----------99999999999868998999999999999869-----------999999
Q ss_pred HHHHHHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHHHHCCCC-----------CCCCC
Q ss_conf 99999998499989---------------------99999950999948899999998712125-----------89986
Q 030634 108 ECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGINQQTL-----------GGGSS 155 (174)
Q Consensus 108 ~~~~kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~~~~~~~-----------~~~~~ 155 (174)
.+|++|++++|++. .|+++++++|..+.++.+||.++..+|+. ...|+
T Consensus 64 ~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~ 143 (723)
T 4gyw_A 64 MHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPD 143 (723)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC
T ss_conf 99999998099989999999999998499999999999999809998999999999999869999999999999973999
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 0467899999984200
Q 030634 156 ASSAQVNFCICVHQMK 171 (174)
Q Consensus 156 ~~~~~~~~~~~~~~~~ 171 (174)
.+.+..+++.++..++
T Consensus 144 ~~~a~~~L~~~l~~~g 159 (723)
T 4gyw_A 144 FPDAYCNLAHCLQIVC 159 (723)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
T ss_conf 8577740556777401
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=1.00 E-value=1 Score=127.39 Aligned_cols=155 Identities=15% Similarity=0.145 Sum_probs=133.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 68864669999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~ 86 (174)
-+-+++.+++|+..+++++..+|+++.++.++|.++...|++ ++|+..|+++++++|+++.+++++|.++
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLV----------NPALENGKTLVARTPRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999869999999999999981999889999999999974987----------9999999999986998589999999999
Q ss_pred HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 85897765626642599999999999998499989---------------------999999509999488999999987
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (174)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~~ 145 (174)
...+...+......+++++|+..|+++++++|++. .|+++++++ ..+..+.+++.++.
T Consensus 84 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~ 162 (217)
T 2pl2_A 84 VALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYL 162 (217)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC-CCHHHHHHHHHHHH
T ss_conf 98652011220124679999999999987496538999999999998598699999999998664-66689999999999
Q ss_pred HCCCC-----------CCCCCHHHHHHHHHHHHHHHCC
Q ss_conf 12125-----------8998604678999999842000
Q 030634 146 NQQTL-----------GGGSSASSAQVNFCICVHQMKM 172 (174)
Q Consensus 146 ~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~ 172 (174)
..|+. ...|+.+.+..+++.++.+++.
T Consensus 163 ~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~ 200 (217)
T 2pl2_A 163 SMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGK 200 (217)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---
T ss_pred HCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCC
T ss_conf 86999999999999998598873889999999998568
No 6
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=1.00 E-value=1 Score=123.81 Aligned_cols=141 Identities=15% Similarity=0.128 Sum_probs=130.4
Q ss_pred HHHHHHHHHHHHHHHH--------HHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 6466999999999999--------50999999999999999993375430011310999999999999739999999999
Q 030634 10 RLLLSEHNRKTAEANY--------AKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWS 81 (174)
Q Consensus 10 ~~~~~~eA~~~~~~al--------~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~n 81 (174)
..+.+++|+..+++++ ..+|+++++++.+|.++...|++ ++|+..|+++++++|+++.+|++
T Consensus 403 ~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~----------~~A~~~~~~al~~~p~~~~a~~~ 472 (681)
T 2pzi_A 403 VLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDV----------AKATRKLDDLAERVGWRWRLVWY 472 (681)
T ss_dssp TTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHHCCCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHCCCCCHHHHHHH
T ss_conf 53688999999997664112323445656256899999999966999----------99999999874138605899988
Q ss_pred HHHHHHHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH--------------------HHHHHHHCCCCCHHHHHHHH
Q ss_conf 9999985897765626642599999999999998499989--------------------99999950999948899999
Q 030634 82 LGNAHTSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE--------------------LYQKSLEVSTKAPELHMELH 141 (174)
Q Consensus 82 LG~a~~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~--------------------~~~~Al~~~~~~~~~~~~L~ 141 (174)
+|.++..+| ++++|+.+|+++++++|++. .|+++++++|..+.++.+++
T Consensus 473 lg~~~~~~g-----------~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~~~~~~~al~~~P~~~~a~~~lg 541 (681)
T 2pzi_A 473 RAVAELLTG-----------DYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDEHKFYQTVWSTNDGVISAAFGLA 541 (681)
T ss_dssp HHHHHHHHT-----------CHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCTTCHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHHHCC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 999999738-----------999999999999986889757999999999981896799999999974876189999999
Q ss_pred HHHHHCCCC---------CC--CCCHHHHHHHHHHHHHHHC
Q ss_conf 998712125---------89--9860467899999984200
Q 030634 142 KHGINQQTL---------GG--GSSASSAQVNFCICVHQMK 171 (174)
Q Consensus 142 ~~~~~~~~~---------~~--~~~~~~~~~~~~~~~~~~~ 171 (174)
.++..+|+. +. .|+.+.+..+.+.++-..+
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~~~~ 582 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLLSGR 582 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC---
T ss_pred HHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCC
T ss_conf 99997699889999998613048651999999999997268
No 7
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=1.00 E-value=1 Score=122.94 Aligned_cols=142 Identities=8% Similarity=-0.025 Sum_probs=128.7
Q ss_pred HHHHHH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 886466-9999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634 8 FDRLLL-SEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 8 ~~~~~~-~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~ 86 (174)
+.+++. +++|+..+++++.++|+++.+|+++|.++..+|++ ++|+..|+++++++|++..+|+++|.++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~----------~eAl~~~~kal~ldP~~~~a~~~lg~~~ 210 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDP----------SQELEFIADILNQDAKNYHAWQHRQWVI 210 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC----------TTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 998264799999999999987887899999999999984688----------9999999999985855899999999999
Q ss_pred HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH---------------------------HHHHHHHCCCCCHHHHHH
Q ss_conf 85897765626642599999999999998499989---------------------------999999509999488999
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------------LYQKSLEVSTKAPELHME 139 (174)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~---------------------------~~~~Al~~~~~~~~~~~~ 139 (174)
..+| ++++|+.+|+++++++|++. .|+++++++|..+.++.+
T Consensus 211 ~~~g-----------~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~ 279 (382)
T 2h6f_A 211 QEFK-----------LWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNY 279 (382)
T ss_dssp HHHT-----------CCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred HHCC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 9817-----------73999999999998688999999999999998417526788999999999999878899899999
Q ss_pred HHHHHHHCCC--C----------CCCCCHHHHHHHHHHHHHHH
Q ss_conf 9999871212--5----------89986046789999998420
Q 030634 140 LHKHGINQQT--L----------GGGSSASSAQVNFCICVHQM 170 (174)
Q Consensus 140 L~~~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~ 170 (174)
++.++...|. . ...|+.+.++..++.++..+
T Consensus 280 l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 280 LKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999973696316999999998323799799999999999987
No 8
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=1.00 E-value=1 Score=118.50 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 88646699999999999950999999999999999993375430011310999999999999739999999999999998
Q 030634 8 FDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAHT 87 (174)
Q Consensus 8 ~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~~ 87 (174)
|...+.+++|+..+++++..+|.++..++.+|.++...+++ ++|+..|+++++++|+++.+|+++|.++.
T Consensus 7 ~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~----------~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 76 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEY----------DLAKKYICTYINVQERDPKAHRFLGLLYE 76 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCH----------HHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 98867199999999975314811589999999999996999----------99999999999739998999999999998
Q ss_pred HCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH----------------------HHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 5897765626642599999999999998499989----------------------999999509999488999999987
Q 030634 88 SCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE----------------------LYQKSLEVSTKAPELHMELHKHGI 145 (174)
Q Consensus 88 ~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~----------------------~~~~Al~~~~~~~~~~~~L~~~~~ 145 (174)
..| ++++|+.+|+++++++|++. .++++++++|+.+.++...+.++.
T Consensus 77 ~~~-----------~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~ 145 (150)
T 4ga2_A 77 LEE-----------NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLD 145 (150)
T ss_dssp HTT-----------CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HCC-----------CHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 718-----------608999999999986989899999999999986995999999999999859499999999999999
Q ss_pred HCCC
Q ss_conf 1212
Q 030634 146 NQQT 149 (174)
Q Consensus 146 ~~~~ 149 (174)
.+|.
T Consensus 146 ~~G~ 149 (150)
T 4ga2_A 146 CEGE 149 (150)
T ss_dssp TCCC
T ss_pred HHCC
T ss_conf 7592
No 9
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=1.00 E-value=1 Score=118.37 Aligned_cols=121 Identities=11% Similarity=0.020 Sum_probs=112.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 68864669999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634 7 DFDRLLLSEHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 7 ~~~~~~~~~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~ 86 (174)
-|-+++.+++|+..++++++.+|+++.+++++|.++...|++ ++|+..|+++++++|+++.+|+++|.++
T Consensus 442 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 442 ALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY----------DSATKHFTEVLDTFPGELAPKLALAATA 511 (681)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHHHSTTCSHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999669999999999987413860589998899999973899----------9999999999986889757999999999
Q ss_pred HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH---------------------HHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf 85897765626642599999999999998499989---------------------999999509999488999999987
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE---------------------LYQKSLEVSTKAPELHMELHKHGI 145 (174)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~---------------------~~~~Al~~~~~~~~~~~~L~~~~~ 145 (174)
..+| ++++ +.+|+++++++|++. .|+++++++|..+.++.+++.+++
T Consensus 512 ~~~g-----------~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~~ 579 (681)
T 2pzi_A 512 ELAG-----------NTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTLL 579 (681)
T ss_dssp HHHT-----------CCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHTC
T ss_pred HHCC-----------CHHH-HHHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
T ss_conf 9818-----------9679-999999997487618999999999997699889999998613048651999999999997
Q ss_pred HCCC
Q ss_conf 1212
Q 030634 146 NQQT 149 (174)
Q Consensus 146 ~~~~ 149 (174)
..+.
T Consensus 580 ~~~~ 583 (681)
T 2pzi_A 580 SGRS 583 (681)
T ss_dssp ----
T ss_pred CCCC
T ss_conf 2688
No 10
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=1.00 E-value=1 Score=115.79 Aligned_cols=151 Identities=13% Similarity=0.062 Sum_probs=120.6
Q ss_pred HHHHHHH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Q ss_conf 8864669-999999999995099999999999999999337543001131099999999999973999999999999999
Q 030634 8 FDRLLLS-EHNRKTAEANYAKDPLDADNLTRWGEALLELSQFESVSDSKKIINEAISKFEEALVIDPAKHYTLWSLGNAH 86 (174)
Q Consensus 8 ~~~~~~~-~eA~~~~~~al~~~P~~~~~~~~lg~al~~~~~~~~~~~~~~~~~eAi~~~e~Al~ldP~~~~a~~nLG~a~ 86 (174)
|.+++.+ ++|+..++++++.+|+++.+|..+|.++...|++ ++|+..|+++++++|+ +.+++++|.++
T Consensus 112 ~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~~~p~-~~~~~~lg~~~ 180 (474)
T 4abn_A 112 LNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDV----------TSAHTCFSGALTHCKN-KVSLQNLSMVL 180 (474)
T ss_dssp HTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCH----------HHHHHHHHHHHTTCCC-HHHHHHHHHHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCH----------HHHHHHHHHHHHHCCC-HHHHHHHHHHH
T ss_conf 886645479999999999866978799999999999985999----------9999999999865987-79999999999
Q ss_pred HHCCCCCCCHHHHHCCHHHHHHHHHHHHHHCCCCH-----------------------------HHHHHHHCCC---CCH
Q ss_conf 85897765626642599999999999998499989-----------------------------9999995099---994
Q 030634 87 TSCGFLTADLSEAKGDFDKASECFQRAVDEEPTNE-----------------------------LYQKSLEVST---KAP 134 (174)
Q Consensus 87 ~~~g~~~~~~~~~~~~~~eA~~~~~kAl~l~P~~~-----------------------------~~~~Al~~~~---~~~ 134 (174)
..++ .+...+..+++++|+.+|+++++++|++. .|+++++++| ..+
T Consensus 181 ~~~~--~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 258 (474)
T 4abn_A 181 RQLQ--TDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNP 258 (474)
T ss_dssp TTCC--CSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCH
T ss_pred HHHC--CCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCH
T ss_conf 9721--37706566439999999999987397788999999999999987514453229999999999997497754489
Q ss_pred HHHHHHHHHHHHCCCC-----------CCCCCHHHHHHHHHHHHHHHC
Q ss_conf 8899999998712125-----------899860467899999984200
Q 030634 135 ELHMELHKHGINQQTL-----------GGGSSASSAQVNFCICVHQMK 171 (174)
Q Consensus 135 ~~~~~L~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~ 171 (174)
..+.+++.++..+|+. ...|+.+.+..+.+.++..++
T Consensus 259 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg 306 (474)
T 4abn_A 259 DLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLS 306 (474)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 999999999998578999999999999868998799999999999998
Done!