BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030635
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2P9O|A Chain A, Structure Of Dutpase From Arabidopsis Thaliana
pdb|2P9O|B Chain B, Structure Of Dutpase From Arabidopsis Thaliana
pdb|2P9O|C Chain C, Structure Of Dutpase From Arabidopsis Thaliana
pdb|2PC5|A Chain A, Native Crystal Structure Analysis On Arabidopsis Dutpase
pdb|2PC5|B Chain B, Native Crystal Structure Analysis On Arabidopsis Dutpase
pdb|2PC5|C Chain C, Native Crystal Structure Analysis On Arabidopsis Dutpase
Length = 169
Score = 262 bits (669), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 129/163 (79%), Positives = 145/163 (88%), Gaps = 1/163 (0%)
Query: 13 VKEPSAKIPKLHQNGVEHDNTSS-LLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPA 71
V EPS K+ KL +NG+ D++ S +VKKLSEKAV+P RGSPL+AGYDLSS+ ++KVPA
Sbjct: 7 VNEPSPKLQKLDRNGIHGDSSPSPFFKVKKLSEKAVIPTRGSPLSAGYDLSSAVDSKVPA 66
Query: 72 RGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD 131
RGKAL+PTDLSIA+PEGTYA IAPRSGLAWKHS+DVGAGVIDADYRGPVGVILFNHSD D
Sbjct: 67 RGKALIPTDLSIAVPEGTYARIAPRSGLAWKHSIDVGAGVIDADYRGPVGVILFNHSDAD 126
Query: 132 FEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGFGSTGV 174
FEVK GDRIAQLIIEKIVTPDV+EV LD TVRG+GGFGSTGV
Sbjct: 127 FEVKFGDRIAQLIIEKIVTPDVVEVDDLDETVRGDGGFGSTGV 169
>pdb|3SO2|A Chain A, Chlorella Dutpase
Length = 146
Score = 192 bits (489), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 92/138 (66%), Positives = 113/138 (81%)
Query: 37 LRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPR 96
LRV L+E AVLPKRGS AAG+DL+S +T+VPARG+A+V T L IAIP GTYA +APR
Sbjct: 7 LRVHLLNEHAVLPKRGSAGAAGFDLASCEDTEVPARGRAVVKTGLQIAIPPGTYARVAPR 66
Query: 97 SGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEV 156
SGLA KH +D GAGV+D DYRG VGV+LFNH + F+V+RGDR+AQLI+E+I TP+V+EV
Sbjct: 67 SGLAVKHFIDTGAGVVDEDYRGEVGVVLFNHGETPFQVRRGDRVAQLILERIATPEVVEV 126
Query: 157 QHLDSTVRGEGGFGSTGV 174
+ LD T RG GG+GSTGV
Sbjct: 127 ESLDETTRGTGGYGSTGV 144
>pdb|3ECY|A Chain A, Crystal Structural Analysis Of Drosophila Melanogaster
Dutpase
pdb|3ECY|B Chain B, Crystal Structural Analysis Of Drosophila Melanogaster
Dutpase
Length = 160
Score = 181 bits (458), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 87/141 (61%), Positives = 107/141 (75%)
Query: 34 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHI 93
+ +LR KL+E A+ P RGS AAG DL S+ + VPARGKA+V TDL + +PEG+Y +
Sbjct: 19 TCVLRFAKLTENALEPVRGSAKAAGVDLRSAYDVVVPARGKAIVKTDLQVQVPEGSYGRV 78
Query: 94 APRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDV 153
APRSGLA K+ +DVGAGV+D DYRG +GV+LFNHSDVDFEVK GDRIAQ I E+I P +
Sbjct: 79 APRSGLAVKNFIDVGAGVVDEDYRGNLGVVLFNHSDVDFEVKHGDRIAQFICERIFYPQL 138
Query: 154 LEVQHLDSTVRGEGGFGSTGV 174
+ V L+ T RGE GFGSTGV
Sbjct: 139 VMVDKLEDTERGEAGFGSTGV 159
>pdb|1Q5H|A Chain A, Human Dutp Pyrophosphatase Complex With Dudp
pdb|1Q5H|B Chain B, Human Dutp Pyrophosphatase Complex With Dudp
pdb|1Q5H|C Chain C, Human Dutp Pyrophosphatase Complex With Dudp
pdb|1Q5U|X Chain X, Human Dutp Pyrophosphatase
pdb|1Q5U|Y Chain Y, Human Dutp Pyrophosphatase
pdb|1Q5U|Z Chain Z, Human Dutp Pyrophosphatase
Length = 147
Score = 172 bits (437), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 99/137 (72%)
Query: 37 LRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPR 96
LR +LSE A P RGS AAGYDL S+ + +P KA+V TD+ IA+P G Y +APR
Sbjct: 9 LRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPR 68
Query: 97 SGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEV 156
SGLA KH +DVGAGVID DYRG VGV+LFN FEVK+GDRIAQLI E+I P++ EV
Sbjct: 69 SGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEV 128
Query: 157 QHLDSTVRGEGGFGSTG 173
Q LD T RG GGFGSTG
Sbjct: 129 QALDDTERGSGGFGSTG 145
>pdb|2HQU|A Chain A, Human Dutpase In Complex With Alpha,Beta-Iminodutp And
Magnesium Ion
pdb|2HQU|B Chain B, Human Dutpase In Complex With Alpha,Beta-Iminodutp And
Magnesium Ion
pdb|2HQU|C Chain C, Human Dutpase In Complex With Alpha,Beta-Iminodutp And
Magnesium Ion
pdb|3EHW|A Chain A, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|B Chain B, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|C Chain C, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|X Chain X, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|Y Chain Y, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3EHW|Z Chain Z, Human Dutpase In Complex With Alpha,Beta-Imido-Dutp And
Mg2+: Visualization Of The Full-Length C-Termini In All
Monomers And Suggestion For An Additional Metal Ion
Binding Site
pdb|3ARA|A Chain A, Discovery Of Novel Uracil Derivatives As Potent Human
Dutpase Inhibitors
pdb|3ARA|B Chain B, Discovery Of Novel Uracil Derivatives As Potent Human
Dutpase Inhibitors
pdb|3ARA|C Chain C, Discovery Of Novel Uracil Derivatives As Potent Human
Dutpase Inhibitors
pdb|3ARN|A Chain A, Human Dutpase In Complex With Novel Uracil Derivative
pdb|3ARN|B Chain B, Human Dutpase In Complex With Novel Uracil Derivative
pdb|3ARN|C Chain C, Human Dutpase In Complex With Novel Uracil Derivative
Length = 164
Score = 172 bits (436), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 85/137 (62%), Positives = 99/137 (72%)
Query: 37 LRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPR 96
LR +LSE A P RGS AAGYDL S+ + +P KA+V TD+ IA+P G Y +APR
Sbjct: 26 LRFARLSEHATAPTRGSARAAGYDLYSAYDYTIPPMEKAVVKTDIQIALPSGCYGRVAPR 85
Query: 97 SGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEV 156
SGLA KH +DVGAGVID DYRG VGV+LFN FEVK+GDRIAQLI E+I P++ EV
Sbjct: 86 SGLAAKHFIDVGAGVIDEDYRGNVGVVLFNFGKEKFEVKKGDRIAQLICERIFYPEIEEV 145
Query: 157 QHLDSTVRGEGGFGSTG 173
Q LD T RG GGFGSTG
Sbjct: 146 QALDDTERGSGGFGSTG 162
>pdb|3C3I|A Chain A, Evolution Of Chlorella Virus Dutpase
pdb|3C3I|B Chain B, Evolution Of Chlorella Virus Dutpase
pdb|3C3I|C Chain C, Evolution Of Chlorella Virus Dutpase
pdb|3C3I|D Chain D, Evolution Of Chlorella Virus Dutpase
Length = 141
Score = 164 bits (416), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 86/141 (60%), Positives = 105/141 (74%), Gaps = 1/141 (0%)
Query: 34 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHI 93
SSLL VKKL E A P RGS AAGYD+SS + VPA G+ V T +SI +P+GTY I
Sbjct: 2 SSLL-VKKLVESATTPMRGSEGAAGYDISSVEDVVVPAMGRIAVSTGISIRVPDGTYGRI 60
Query: 94 APRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDV 153
APRSGLA+K+ +DV AGVID+DYRG V VIL+N ++ D+ +K+GDRIAQLI+E+IVTP V
Sbjct: 61 APRSGLAYKYGIDVLAGVIDSDYRGEVKVILYNTTERDYIIKKGDRIAQLILEQIVTPGV 120
Query: 154 LEVQHLDSTVRGEGGFGSTGV 174
V L T RG GGFGSTG+
Sbjct: 121 AVVLDLSDTARGSGGFGSTGI 141
>pdb|3CA9|A Chain A, Evolution Of Chlorella Virus Dutpase
pdb|3CA9|B Chain B, Evolution Of Chlorella Virus Dutpase
Length = 165
Score = 164 bits (414), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 87/151 (57%), Positives = 106/151 (70%), Gaps = 1/151 (0%)
Query: 24 HQNGVEHDNTSSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSI 83
Q G + SSLL VKKL E A P RGS AAGYD+SS + VPA G+ V T +SI
Sbjct: 8 QQMGRGSEFMSSLL-VKKLVESATTPMRGSEGAAGYDISSVEDVVVPAMGRIAVSTGISI 66
Query: 84 AIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQL 143
+P+GTY IAPRSGLA+K+ +DV AGVID DY G V VIL+N ++ D+ +K+GDRIAQL
Sbjct: 67 RVPDGTYGRIAPRSGLAYKYGIDVLAGVIDEDYTGEVKVILYNTTERDYIIKKGDRIAQL 126
Query: 144 IIEKIVTPDVLEVQHLDSTVRGEGGFGSTGV 174
I+E+IVTP V V L T RG GGFGSTG+
Sbjct: 127 ILEQIVTPGVAVVLDLSDTARGSGGFGSTGI 157
>pdb|3C2T|A Chain A, Evolution Of Chlorella Virus Dutpase
pdb|3C2T|B Chain B, Evolution Of Chlorella Virus Dutpase
Length = 141
Score = 161 bits (407), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 85/141 (60%), Positives = 103/141 (73%), Gaps = 1/141 (0%)
Query: 34 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHI 93
SSLL VKKL E A P RGS AAGYD+SS + VPA G+ V T +SI +P+GTY I
Sbjct: 2 SSLL-VKKLVESATTPMRGSEGAAGYDISSVEDVVVPAMGRIAVSTGISIRVPDGTYGRI 60
Query: 94 APRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDV 153
APRSGLA+K+ +DV AGVID DY G V VIL+N ++ D+ +K+GDRIAQLI+E+IVTP V
Sbjct: 61 APRSGLAYKYGIDVLAGVIDEDYTGEVKVILYNTTERDYIIKKGDRIAQLILEQIVTPGV 120
Query: 154 LEVQHLDSTVRGEGGFGSTGV 174
V L T RG GGFGSTG+
Sbjct: 121 AVVLDLSDTARGSGGFGSTGI 141
>pdb|3P48|A Chain A, Structure Of The Yeast Dutpase Dut1 In Complex With
Dumpnpp
pdb|3P48|B Chain B, Structure Of The Yeast Dutpase Dut1 In Complex With
Dumpnpp
pdb|3P48|C Chain C, Structure Of The Yeast Dutpase Dut1 In Complex With
Dumpnpp
Length = 147
Score = 151 bits (382), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 98/139 (70%), Gaps = 1/139 (0%)
Query: 36 LLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAP 95
+L+++ S A +P +GS AAGYD+ +S + +PA G+ +V TD+S +P GTY IAP
Sbjct: 8 VLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAP 67
Query: 96 RSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIV-TPDVL 154
RSGLA K+ + GAGV+D DY G V V+LFNHS DF +K+GDR+AQLI+EKIV ++
Sbjct: 68 RSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIV 127
Query: 155 EVQHLDSTVRGEGGFGSTG 173
V L+ + RG GGFGSTG
Sbjct: 128 VVDSLEESARGAGGFGSTG 146
>pdb|3F4F|A Chain A, Crystal Structure Of Dut1p, A Dutpase From Saccharomyces
Cerevisiae
pdb|3F4F|B Chain B, Crystal Structure Of Dut1p, A Dutpase From Saccharomyces
Cerevisiae
pdb|3F4F|C Chain C, Crystal Structure Of Dut1p, A Dutpase From Saccharomyces
Cerevisiae
pdb|3HHQ|A Chain A, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|B Chain B, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|C Chain C, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|D Chain D, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|E Chain E, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|F Chain F, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|G Chain G, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|H Chain H, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|I Chain I, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|J Chain J, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|K Chain K, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|L Chain L, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|M Chain M, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|N Chain N, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|O Chain O, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|P Chain P, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|Q Chain Q, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|R Chain R, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|S Chain S, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|T Chain T, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|U Chain U, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|V Chain V, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|W Chain W, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
pdb|3HHQ|X Chain X, Crystal Structure Of Apo Dut1p From Saccharomyces
Cerevisiae
Length = 167
Score = 151 bits (381), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 98/139 (70%), Gaps = 1/139 (0%)
Query: 36 LLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAP 95
+L+++ S A +P +GS AAGYD+ +S + +PA G+ +V TD+S +P GTY IAP
Sbjct: 28 VLKIQLRSASATVPTKGSATAAGYDIYASQDITIPAMGQGMVSTDISFTVPVGTYGRIAP 87
Query: 96 RSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIV-TPDVL 154
RSGLA K+ + GAGV+D DY G V V+LFNHS DF +K+GDR+AQLI+EKIV ++
Sbjct: 88 RSGLAVKNGIQTGAGVVDRDYTGEVKVVLFNHSQRDFAIKKGDRVAQLILEKIVDDAQIV 147
Query: 155 EVQHLDSTVRGEGGFGSTG 173
V L+ + RG GGFGSTG
Sbjct: 148 VVDSLEESARGAGGFGSTG 166
>pdb|3LQW|A Chain A, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Entamoeba Histolytica
Length = 163
Score = 148 bits (373), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/138 (55%), Positives = 95/138 (68%)
Query: 36 LLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAP 95
+L VKKL E A++P RGS AAG DL S+T + + LV T +S+ IP Y IAP
Sbjct: 25 VLLVKKLVEDAIVPTRGSKCAAGIDLYSNTNFIIQPHERFLVSTGVSVQIPHQCYGRIAP 84
Query: 96 RSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLE 155
RS LA K+ +DVGAGVID DYRG + VILFNHS+ F ++GDRIAQLIIE+I + E
Sbjct: 85 RSSLALKYGIDVGAGVIDEDYRGEIKVILFNHSNEIFNGRKGDRIAQLIIERISYCRISE 144
Query: 156 VQHLDSTVRGEGGFGSTG 173
V+ L++T RG GFGSTG
Sbjct: 145 VKELNTTDRGTNGFGSTG 162
>pdb|2OKD|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKD|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKD|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKE|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKE|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKE|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL0|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL0|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL0|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL1|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL1|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OL1|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
Length = 147
Score = 144 bits (364), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 73/143 (51%), Positives = 98/143 (68%), Gaps = 1/143 (0%)
Query: 32 NTSSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYA 91
N +S +R K + +A P R SP AAGYDL S+ + +P + L+ TD+S+++P+ Y
Sbjct: 5 NINSPVRFVKETNRAKSPTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYG 64
Query: 92 HIAPRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTP 151
IAPRSGL+ K +D+G GVID DYRG +GVIL N+ F V GDRIAQLI ++I P
Sbjct: 65 RIAPRSGLSLK-GIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYP 123
Query: 152 DVLEVQHLDSTVRGEGGFGSTGV 174
++ EVQ LDST RG+ GFGSTG+
Sbjct: 124 ELEEVQSLDSTNRGDQGFGSTGL 146
>pdb|2OKB|A Chain A, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKB|B Chain B, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
pdb|2OKB|C Chain C, High Resolution Crystal Structures Of Vaccinia Virus
Dutpase
Length = 137
Score = 140 bits (353), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/134 (52%), Positives = 93/134 (69%), Gaps = 1/134 (0%)
Query: 41 KLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLA 100
K + +A P R SP AAGYDL S+ + +P + L+ TD+S+++P+ Y IAPRSGL+
Sbjct: 4 KETNRAKSPTRQSPGAAGYDLYSAYDYTIPPGERQLIKTDISMSMPKFCYGRIAPRSGLS 63
Query: 101 WKHSMDVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLD 160
K +D+G GVID DYRG +GVIL N+ F V GDRIAQLI ++I P++ EVQ LD
Sbjct: 64 LK-GIDIGGGVIDEDYRGNIGVILINNGKCTFNVNTGDRIAQLIYQRIYYPELEEVQSLD 122
Query: 161 STVRGEGGFGSTGV 174
ST RG+ GFGSTG+
Sbjct: 123 STNRGDQGFGSTGL 136
>pdb|3MBQ|A Chain A, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Brucella Melitensis,
Orthorhombic Crystal Form
pdb|3MBQ|B Chain B, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Brucella Melitensis,
Orthorhombic Crystal Form
pdb|3MBQ|C Chain C, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Brucella Melitensis,
Orthorhombic Crystal Form
pdb|3MDX|A Chain A, Crystal Structure Of Deoxyuridine 5-Triphosphate
Nucleotidohydrolase From Brucella Melitensis,
Rhombohedral Crystal Form
Length = 178
Score = 98.2 bits (243), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 76/134 (56%), Gaps = 8/134 (5%)
Query: 48 LPKRGSPLAAGYDLSSSTETK-----VPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWK 102
LP + +AG DL ++ +P R + LVPT L + IP+G I PRSGLA+K
Sbjct: 45 LPAYETAGSAGMDLRAAVAEDRQIVLLPGR-RTLVPTGLILEIPQGYEVQIRPRSGLAFK 103
Query: 103 HSMDV--GAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLD 160
+ + G ID+DYRG V V+L N D DF ++RG RIAQ + ++ P + E +
Sbjct: 104 NGITCLNTPGTIDSDYRGEVKVLLINLGDDDFRIERGMRIAQAVFAPVIQPKIEERAKIS 163
Query: 161 STVRGEGGFGSTGV 174
T RG GGFGSTG
Sbjct: 164 ETARGAGGFGSTGT 177
>pdb|3ZEZ|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism.
pdb|3ZF2|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 55/169 (32%), Positives = 93/169 (55%), Gaps = 28/169 (16%)
Query: 34 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHI 93
++ L+VK LS+ A +P+R AGYD+ S+ + + KA++ TD++++IPEG +
Sbjct: 39 TNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 98
Query: 94 APRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD---------------------- 131
RSG++ K + + G IDA Y G +G+ + N + D
Sbjct: 99 TSRSGVSSKTHLVIETGKIDAGYHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHL 158
Query: 132 -----FEVKRGDRIAQLIIEKIVTPDVLEVQHLDS-TVRGEGGFGSTGV 174
+ +++G+RIAQL+I I TP++ +V+ +S + RGE GFGS+GV
Sbjct: 159 YKLGSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV 207
>pdb|3ZF5|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 89.7 bits (221), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 93/169 (55%), Gaps = 28/169 (16%)
Query: 34 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHI 93
++ L+VK LS+ A +P+R AGYD+ S+ + + KA++ TD++++IPEG +
Sbjct: 39 TNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 98
Query: 94 APRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD---------------------- 131
RSG++ K + + G IDA + G +G+ + N + D
Sbjct: 99 TSRSGVSSKTHLVIETGKIDAGFHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHL 158
Query: 132 -----FEVKRGDRIAQLIIEKIVTPDVLEVQHLDS-TVRGEGGFGSTGV 174
+ +++G+RIAQL+I I TP++ +V+ +S + RGE GFGS+GV
Sbjct: 159 YKLGSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV 207
>pdb|3ZF1|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 89.7 bits (221), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 93/169 (55%), Gaps = 28/169 (16%)
Query: 34 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHI 93
++ L+VK LS+ A +P+R AGYD+ S+ + + KA++ TD++++IPEG +
Sbjct: 39 TNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 98
Query: 94 APRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD---------------------- 131
RSG++ K + + G I+A Y G +G+ + N + D
Sbjct: 99 TSRSGVSSKTHLVIETGKINAGYHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHL 158
Query: 132 -----FEVKRGDRIAQLIIEKIVTPDVLEVQHLDS-TVRGEGGFGSTGV 174
+ +++G+RIAQL+I I TP++ +V+ +S + RGE GFGS+GV
Sbjct: 159 YKLGSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV 207
>pdb|3ZF0|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 28/169 (16%)
Query: 34 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHI 93
++ L+VK LS+ A +P+R AGYD+ S+ + + KA++ TD++++IPEG +
Sbjct: 39 TNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 98
Query: 94 APRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD---------------------- 131
RSG++ K + + G I A Y G +G+ + N + D
Sbjct: 99 TSRSGVSSKTHLVIETGKIAAGYHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHL 158
Query: 132 -----FEVKRGDRIAQLIIEKIVTPDVLEVQHLDS-TVRGEGGFGSTGV 174
+ +++G+RIAQL+I I TP++ +V+ +S + RGE GFGS+GV
Sbjct: 159 YKLGSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV 207
>pdb|3ZF6|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 88.2 bits (217), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 91/169 (53%), Gaps = 28/169 (16%)
Query: 34 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHI 93
++ L+VK LS+ A +P+R AGYD+ S+ + + KA++ TD++++IPEG +
Sbjct: 39 TNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 98
Query: 94 APRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD---------------------- 131
RSG++ K + + G I A Y G +G+ + N + D
Sbjct: 99 TSRSGVSSKTHLVIETGKIAAGYHGNLGINIKNDHEDDKMQTIFLRNICNEKIFEKERHL 158
Query: 132 -----FEVKRGDRIAQLIIEKIVTPDVLEVQHLDS-TVRGEGGFGSTGV 174
+ +++G+RIAQL+I I TP++ +V+ +S + RGE GFGS GV
Sbjct: 159 YKLGSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSCGV 207
>pdb|3ZF3|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 87.8 bits (216), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 28/169 (16%)
Query: 34 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHI 93
++ L+VK LS+ A +P+R AGYD+ S+ + + KA++ TD++++IPEG +
Sbjct: 39 TNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 98
Query: 94 APRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD---------------------- 131
RSG++ K + + G IDA G +G+ + N + D
Sbjct: 99 TSRSGVSSKTHLVIETGKIDAGIHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHL 158
Query: 132 -----FEVKRGDRIAQLIIEKIVTPDVLEVQHLDS-TVRGEGGFGSTGV 174
+ +++G+RIAQL+I I TP++ +V+ +S + RGE GFGS+GV
Sbjct: 159 YKLGSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV 207
>pdb|3ZF4|A Chain A, Phage Dutpases Control Transfer Of Virulence Genes By A
Proto-oncogenic G Protein-like Mechanism
Length = 207
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 54/169 (31%), Positives = 92/169 (54%), Gaps = 28/169 (16%)
Query: 34 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHI 93
++ L+VK LS+ A +P+R AGYD+ S+ + + KA++ TD++++IPEG +
Sbjct: 39 TNTLQVKLLSKNARMPERNHKTDAGYDIFSAETVVLEPQEKAVIKTDVAVSIPEGYVGLL 98
Query: 94 APRSGLAWKHSMDVGAGVIDADYRGPVGVILFNHSDVD---------------------- 131
RSG++ K + + G IDA G +G+ + N + D
Sbjct: 99 TSRSGVSSKTHLVIETGKIDAGAHGNLGINIKNDHEDDKMQTIFLRNIDNEKIFEKERHL 158
Query: 132 -----FEVKRGDRIAQLIIEKIVTPDVLEVQHLDS-TVRGEGGFGSTGV 174
+ +++G+RIAQL+I I TP++ +V+ +S + RGE GFGS+GV
Sbjct: 159 YKLGSYRIEKGERIAQLVIVPIWTPELKQVEEFESVSERGEKGFGSSGV 207
>pdb|4GK6|A Chain A, X-Ray Crystal Structure Of A Hypothetical Deoxyuridine
5-Triphosphate Nucleotidohydrolase From Mycobacterium
Abscessus
Length = 138
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 3/129 (2%)
Query: 35 SLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIA 94
S+L + +L + LP R AG DL S+ + + + LV T +++AIP G +
Sbjct: 4 SMLAIVRLDRELPLPSRAHADDAGVDLYSAEDVVIEPGRRTLVGTGIAVAIPSGMVGLVH 63
Query: 95 PRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFEVKRGDRIAQLIIEKIVTP 151
PRSGLA + + + G IDA YRG V V L N S+V + RGDRIAQL+++++ P
Sbjct: 64 PRSGLAARVGLSIVNSPGTIDAGYRGEVKVNLINLDSEVPIVIARGDRIAQLLVQQVELP 123
Query: 152 DVLEVQHLD 160
+++EV D
Sbjct: 124 ELVEVDSFD 132
>pdb|3TQZ|A Chain A, Structure Of A Deoxyuridine 5'-Triphosphate
Nucleotidohydrolase (Dut) From Coxiella Burnetii
Length = 155
Score = 80.1 bits (196), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 50/139 (35%), Positives = 75/139 (53%), Gaps = 5/139 (3%)
Query: 40 KKLSEKAVLPKRGSPLAAGYDLSSSTE--TKVPARGKALVPTDLSIAIPEGTYA-HIAPR 96
K+L + LP + +AG DL + + K+ L+ T L+I + A I PR
Sbjct: 15 KRLGSEFPLPAYATTGSAGLDLRACLDEPLKIEPDETCLISTGLAIYLGHSNVAATILPR 74
Query: 97 SGLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVL 154
SGL KH + +G G+ID+DY+GP+ V +N + + GDRIAQL++ I+
Sbjct: 75 SGLGHKHGIVLGNLVGLIDSDYQGPLXVSCWNRGKEPYTINPGDRIAQLVVLPILKAQFA 134
Query: 155 EVQHLDSTVRGEGGFGSTG 173
V+ + T RG GGFGS+G
Sbjct: 135 VVEEFELTERGAGGFGSSG 153
>pdb|1DUP|A Chain A, Deoxyuridine 5'-Triphosphate Nucleotido Hydrolase
(D-Utpase)
pdb|1EU5|A Chain A, Structure Of E. Coli Dutpase At 1.45 A
pdb|1RN8|A Chain A, Crystal Structure Of Dutpase Complexed With Substrate
Analogue Imido-Dutp
pdb|1SEH|A Chain A, Crystal Structure Of E. Coli Dutpase Complexed With The
Product Dump
pdb|1DUD|A Chain A, Deoxyuridine 5'-triphosphate Nucleotide Hydrolase
(d-utpase) Complexed With The Substrate Analogue
Deoxyuridine 5'-diphosphate (d-udp)
pdb|2HR6|A Chain A, Crystal Structure Of Dutpase In Complex With Substrate
Analogue Dudp And Manganese
pdb|2HRM|A Chain A, Crystal Structure Of Dutpase Complexed With Substrate
Analogue Methylene-Dutp
Length = 152
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Query: 41 KLSEKAVLPKRGSPLAAGYDLSSSTETKVP-ARG-KALVPTDLSIAIPEGTYA-HIAPRS 97
++ ++ LP + +AG DL + V A G LVPT L+I I + + A + PRS
Sbjct: 13 RVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRS 72
Query: 98 GLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLE 155
GL KH + +G G+ID+DY+G + + ++N F ++ G+RIAQ+I +V +
Sbjct: 73 GLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNL 132
Query: 156 VQHLDSTVRGEGGFGSTG 173
V+ D+T RGEGGFG +G
Sbjct: 133 VEDFDATDRGEGGFGHSG 150
>pdb|1EUW|A Chain A, Atomic Resolution Structure Of E. Coli Dutpase
Length = 152
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 51/138 (36%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Query: 41 KLSEKAVLPKRGSPLAAGYDLSSSTETKVP-ARG-KALVPTDLSIAIPEGTYA-HIAPRS 97
++ ++ LP + +AG DL + V A G LVPT L+I I + + A + PRS
Sbjct: 13 RVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRS 72
Query: 98 GLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLE 155
GL KH + +G G+ID+DY+G + + ++N F ++ G+RIAQ+I +V +
Sbjct: 73 GLGHKHGIVLGNLVGLIDSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNL 132
Query: 156 VQHLDSTVRGEGGFGSTG 173
V+ D+T RGEGGFG +G
Sbjct: 133 VEDFDATDRGEGGFGHSG 150
>pdb|1RNJ|A Chain A, Crystal Structure Of Inactive Mutant Dutpase Complexed
With Substrate Analogue Imido-Dutp
pdb|1SYL|A Chain A, Crystal Structure Of Inactive Mutant Dutpase Complexed
With Substrate Dutp
Length = 152
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 50/138 (36%), Positives = 80/138 (57%), Gaps = 5/138 (3%)
Query: 41 KLSEKAVLPKRGSPLAAGYDLSSSTETKVP-ARG-KALVPTDLSIAIPEGTYA-HIAPRS 97
++ ++ LP + +AG DL + V A G LVPT L+I I + + A + PRS
Sbjct: 13 RVGKEFPLPTYATSGSAGLDLRACLNDAVELAPGDTTLVPTGLAIHIADPSLAAMMLPRS 72
Query: 98 GLAWKHSMDVG--AGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLE 155
GL KH + +G G+I++DY+G + + ++N F ++ G+RIAQ+I +V +
Sbjct: 73 GLGHKHGIVLGNLVGLINSDYQGQLMISVWNRGQDSFTIQPGERIAQMIFVPVVQAEFNL 132
Query: 156 VQHLDSTVRGEGGFGSTG 173
V+ D+T RGEGGFG +G
Sbjct: 133 VEDFDATDRGEGGFGHSG 150
>pdb|3I93|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dutpase
Stop138t Mutant
Length = 158
Score = 73.9 bits (180), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 32 NTSSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYA 91
+ S+ L + +L LP R AG DL S+ + ++ +ALV T +++A+P G
Sbjct: 20 HMSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVG 79
Query: 92 HIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFEVKRGDRIAQLIIEKI 148
+ PRSGLA + + + G IDA YRG + V L N V RGDRIAQL+++++
Sbjct: 80 LVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRV 139
Query: 149 VTPDVLEVQHLDSTVRGEGGFGST 172
+++EV D E G ST
Sbjct: 140 ELVELVEVSSFD-----EAGLAST 158
>pdb|1SIX|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
pdb|1SLH|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Dudp
pdb|1SLH|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Dudp
pdb|1SLH|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Dudp
pdb|1SM8|A Chain A, M. Tuberculosis Dutpase Complexed With Chromium And Dutp
pdb|1SM8|B Chain B, M. Tuberculosis Dutpase Complexed With Chromium And Dutp
pdb|1SM8|C Chain C, M. Tuberculosis Dutpase Complexed With Chromium And Dutp
pdb|1SMC|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With Dutp In
The Absence Of Metal Ion.
pdb|1SMC|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With Dutp In
The Absence Of Metal Ion.
pdb|1SMC|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With Dutp In
The Absence Of Metal Ion.
pdb|1SNF|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Deoxyuridine 5'-Monophosphate
pdb|1SNF|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Deoxyuridine 5'-Monophosphate
pdb|1SNF|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Deoxyuridine 5'-Monophosphate
pdb|2PY4|A Chain A, Full Length Structure Of The Mycobacterium Tuberculosis
Dutpase Complexed With Magnesium And
Alpha,Beta-Imido-Dutp
Length = 174
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 32 NTSSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYA 91
+ S+ L + +L LP R AG DL S+ + ++ +ALV T +++A+P G
Sbjct: 20 HMSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVG 79
Query: 92 HIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFEVKRGDRIAQLIIEKI 148
+ PRSGLA + + + G IDA YRG + V L N V RGDRIAQL+++++
Sbjct: 80 LVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRV 139
Query: 149 VTPDVLEVQHLDSTVRGEGGFGST 172
+++EV D E G ST
Sbjct: 140 ELVELVEVSSFD-----EAGLAST 158
>pdb|3LOJ|A Chain A, Structure Of Mycobacterium Tuberculosis Dutpase H145a
Mutant
Length = 174
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 32 NTSSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYA 91
+ S+ L + +L LP R AG DL S+ + ++ +ALV T +++A+P G
Sbjct: 20 HMSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVG 79
Query: 92 HIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFEVKRGDRIAQLIIEKI 148
+ PRSGLA + + + G IDA YRG + V L N V RGDRIAQL+++++
Sbjct: 80 LVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRV 139
Query: 149 VTPDVLEVQHLDSTVRGEGGFGST 172
+++EV D E G ST
Sbjct: 140 ELVELVEVSSFD-----EAGLAST 158
>pdb|3HZA|A Chain A, Crystal Structure Of Dutpase H145w Mutant
Length = 174
Score = 73.6 bits (179), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 50/144 (34%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 32 NTSSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYA 91
+ S+ L + +L LP R AG DL S+ + ++ +ALV T +++A+P G
Sbjct: 20 HMSTTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVG 79
Query: 92 HIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFEVKRGDRIAQLIIEKI 148
+ PRSGLA + + + G IDA YRG + V L N V RGDRIAQL+++++
Sbjct: 80 LVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRV 139
Query: 149 VTPDVLEVQHLDSTVRGEGGFGST 172
+++EV D E G ST
Sbjct: 140 ELVELVEVSSFD-----EAGLAST 158
>pdb|1SJN|A Chain A, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
pdb|1SJN|B Chain B, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
pdb|1SJN|C Chain C, Mycobacterium Tuberculosis Dutpase Complexed With
Magnesium And Alpha, Beta-Imido-Dutp
Length = 170
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 8/142 (5%)
Query: 34 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHI 93
S+ L + +L LP R AG DL S+ + ++ +ALV T +++A+P G +
Sbjct: 2 STTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLV 61
Query: 94 APRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFEVKRGDRIAQLIIEKIVT 150
PRSGLA + + + G IDA YRG + V L N V RGDRIAQL+++++
Sbjct: 62 HPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVEL 121
Query: 151 PDVLEVQHLDSTVRGEGGFGST 172
+++EV D E G ST
Sbjct: 122 VELVEVSSFD-----EAGLAST 138
>pdb|1MQ7|A Chain A, Crystal Structure Of Dutpase From Mycobacterium
Tuberculosis (rv2697c)
Length = 154
Score = 73.6 bits (179), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 75/142 (52%), Gaps = 8/142 (5%)
Query: 34 SSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHI 93
S+ L + +L LP R AG DL S+ + ++ +ALV T +++A+P G +
Sbjct: 2 STTLAIVRLDPGLPLPSRAHDGDAGVDLYSAEDVELAPGRRALVRTGVAVAVPFGMVGLV 61
Query: 94 APRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFEVKRGDRIAQLIIEKIVT 150
PRSGLA + + + G IDA YRG + V L N V RGDRIAQL+++++
Sbjct: 62 HPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRVEL 121
Query: 151 PDVLEVQHLDSTVRGEGGFGST 172
+++EV D E G ST
Sbjct: 122 VELVEVSSFD-----EAGLAST 138
>pdb|3H6D|A Chain A, Structure Of The Mycobacterium Tuberculosis Dutpase D28n
Mutant
Length = 174
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/144 (34%), Positives = 76/144 (52%), Gaps = 8/144 (5%)
Query: 32 NTSSLLRVKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYA 91
+ S+ L + +L LP R AG +L S+ + ++ +ALV T +++A+P G
Sbjct: 20 HMSTTLAIVRLDPGLPLPSRAHDGDAGVNLYSAEDVELAPGRRALVRTGVAVAVPFGMVG 79
Query: 92 HIAPRSGLAWKHSMDV--GAGVIDADYRGPVGVILFN-HSDVDFEVKRGDRIAQLIIEKI 148
+ PRSGLA + + + G IDA YRG + V L N V RGDRIAQL+++++
Sbjct: 80 LVHPRSGLATRVGLSIVNSPGTIDAGYRGEIKVALINLDPAAPIVVHRGDRIAQLLVQRV 139
Query: 149 VTPDVLEVQHLDSTVRGEGGFGST 172
+++EV D E G ST
Sbjct: 140 ELVELVEVSSFD-----EAGLAST 158
>pdb|1DUT|A Chain A, Fiv Dutp Pyrophosphatase
pdb|1DUT|B Chain B, Fiv Dutp Pyrophosphatase
Length = 133
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 46 AVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSM 105
+L KR AGYDL ++ E + ++PT + + +P+G + I +S + K +
Sbjct: 7 GILDKRSED--AGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSK-GL 63
Query: 106 DVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQH--LDSTV 163
DV GVID YRG +GVI+ N S + +IAQLII +VLE +DS
Sbjct: 64 DVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILP-CKHEVLEQGKVVMDSE- 121
Query: 164 RGEGGFGSTGV 174
RG+ G+GSTGV
Sbjct: 122 RGDNGYGSTGV 132
>pdb|1F7D|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
pdb|1F7D|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
pdb|1F7K|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7K|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7N|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7N|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7O|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7P|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|B Chain B, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7Q|C Chain C, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms.
pdb|1F7R|A Chain A, Crystal Structures Of Feline Immunodeficiency Virus Dutp
Pyrophosphatase And Its Nucleotide Complexes In Three
Crystal Forms
Length = 136
Score = 65.9 bits (159), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/131 (37%), Positives = 71/131 (54%), Gaps = 7/131 (5%)
Query: 46 AVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSM 105
+L KR AGYDL ++ E + ++PT + + +P+G + I +S + K +
Sbjct: 7 GILDKRSED--AGYDLLAAKEIHLLPGEVKVIPTGVKLMLPKGYWGLIIGKSSIGSK-GL 63
Query: 106 DVGAGVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQH--LDSTV 163
DV GVID YRG +GVI+ N S + +IAQLII +VLE +DS
Sbjct: 64 DVLGGVIDEGYRGEIGVIMINVSRKSITLMERQKIAQLIILP-CKHEVLEQGKVVMDSE- 121
Query: 164 RGEGGFGSTGV 174
RG+ G+GSTGV
Sbjct: 122 RGDNGYGSTGV 132
>pdb|2XCD|A Chain A, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|B Chain B, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|C Chain C, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|D Chain D, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|E Chain E, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCD|F Chain F, Structure Of Yncf,The Genomic Dutpase From Bacillus
Subtilis
pdb|2XCE|A Chain A, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|B Chain B, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|C Chain C, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|D Chain D, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|E Chain E, Structure Of Yncf In Complex With Dupnhpp
pdb|2XCE|F Chain F, Structure Of Yncf In Complex With Dupnhpp
Length = 144
Score = 65.1 bits (157), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 50/147 (34%), Positives = 78/147 (53%), Gaps = 19/147 (12%)
Query: 37 LRVKKLSEKAVLPKRGSPLAAG--YDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIA 94
+++K L E R S + G DL ++ + + LVP +++ +PEG AH+
Sbjct: 5 IKIKYLDETQT---RISKIEQGDWIDLRAAEDVTIKKDEFKLVPLGVAMELPEGYEAHVV 61
Query: 95 PRS------GLAWKHSMDVGAGVIDADYRGPVGVILF-NHSDVDFEVKRGDRIAQL-IIE 146
PRS G+ +SM GVID Y+G F ++ D E+K+GDRI Q I++
Sbjct: 62 PRSSTYKNFGVIQTNSM----GVIDESYKGDNDFWFFPAYALRDTEIKKGDRICQFRIMK 117
Query: 147 KIVTPDVLEVQHLDSTVRGEGGFGSTG 173
K+ +++EV+HL + R GG GSTG
Sbjct: 118 KMPAVELVEVEHLGNEDR--GGLGSTG 142
>pdb|1DUC|A Chain A, Eiav Dutpase DudpSTRONTIUM COMPLEX
pdb|1DUN|A Chain A, Eiav Dutpase Native
Length = 134
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 60/118 (50%), Gaps = 1/118 (0%)
Query: 57 AGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGAGVIDADY 116
AG+DL + +P ++PTD+ I +P ++ + +S +A K + + G+ID Y
Sbjct: 17 AGFDLCVPYDIMIPVSDTKIIPTDVKIQVPPNSFGWVTGKSSMA-KQGLLINGGIIDEGY 75
Query: 117 RGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGFGSTGV 174
G + VI N + ++ G + AQLII + + + RG+ GFGSTGV
Sbjct: 76 TGEIQVICTNIGKSNIKLIEGQKFAQLIILQHHSNSRQPWDENKISQRGDKGFGSTGV 133
>pdb|2BAZ|A Chain A, Structure Of Yoss, A Putative Dutpase From Bacillus
Subtilis
pdb|2BAZ|B Chain B, Structure Of Yoss, A Putative Dutpase From Bacillus
Subtilis
pdb|2BAZ|C Chain C, Structure Of Yoss, A Putative Dutpase From Bacillus
Subtilis
pdb|2XX6|A Chain A, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XX6|B Chain B, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XX6|C Chain C, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XX6|D Chain D, Structure Of The Bacillus Subtilis Prophage Dutpase, Yoss
pdb|2XY3|A Chain A, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|B Chain B, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|C Chain C, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|D Chain D, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|E Chain E, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2XY3|F Chain F, Structure Of The Bacillus Subtilis Prophage Dutpase With
Dupnhpp
pdb|2Y1T|A Chain A, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|B Chain B, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|C Chain C, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|D Chain D, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|E Chain E, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
pdb|2Y1T|F Chain F, Bacillus Subtilis Prophage Dutpase In Complex With Dudp
Length = 142
Score = 59.7 bits (143), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 43/122 (35%), Positives = 66/122 (54%), Gaps = 14/122 (11%)
Query: 60 DLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRS------GLAWKHSMDVGAGVID 113
DL ++ + + LVP +++ +PEG AH+ PRS G+ +SM GVID
Sbjct: 25 DLRAAEDVAIKKDEFKLVPLGVAMELPEGYEAHVVPRSSTYKNFGVIQTNSM----GVID 80
Query: 114 ADYRGPVGVILF-NHSDVDFEVKRGDRIAQL-IIEKIVTPDVLEVQHLDSTVRGEGGFGS 171
Y+G F ++ D ++K+GDRI Q I++K+ D++EV L + R GG GS
Sbjct: 81 ESYKGDNDFWFFPAYALRDTKIKKGDRICQFRIMKKMPAVDLIEVDRLGNGDR--GGHGS 138
Query: 172 TG 173
TG
Sbjct: 139 TG 140
>pdb|2D4N|A Chain A, Crystal Structure Of M-Pmv Dutpase Complexed With Dupnpp,
Substrate Analogue
pdb|3TPW|A Chain A, Crystal Structure Of M-Pmv Dutpase - Dupnpp Complex
Revealing Distorted Ligand Geometry (Approach
Intermediate)
pdb|3TPN|A Chain A, Crystal Structure Of M-Pmv Dutpase Complexed With Dupnpp,
Substrate
pdb|3TPY|A Chain A, Crystal Structure Of M-Pmv Dutpase With A Mixed Population
Of Substrate (Dupnpp) And Post-Inversion Product (Dump)
In The Active Sites
pdb|3TQ3|A Chain A, Crystal Structure Of M-Pmv Dutpase With A Mixed Population
Of Substrate (Dupnpp) And Post-Inversion Product (Dump)
In The Active Sites
pdb|3TQ4|A Chain A, Crystal Structure Of M-Pmv Dutpase With A Mixed Population
Of Substrate (Dupnpp) And Post-Inversion Product (Dump)
In The Active Sites
pdb|3TQ5|A Chain A, Crystal Structure Of M-Pmv Dutpase Post-Inversion Product
(Dump) Complex
pdb|3TRL|A Chain A, Crystal Structure Of M-Pmv Dutpase Post-Inversion Product
(Dump) Complex
pdb|3TSL|A Chain A, Crystal Structure Of M-Pmv Dutpase Relaxed End-Product
(Dump) Complex
pdb|3TTA|A Chain A, Crystal Structure Of M-Pmv Dutpase Relaxed End-Product
(Dump) Complex
Length = 152
Score = 58.2 bits (139), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 51 RGSPLAAGYDLSSSTETKV-PARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGA 109
R +P +AG DL S++ T + P G + T + +P T+ I RS + K + V
Sbjct: 33 RATPGSAGLDLCSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMK-GLQVYP 91
Query: 110 GVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGF 169
GVID DY G + ++ +++ V +G+RIAQLI+ ++ D + RG+G F
Sbjct: 92 GVIDNDYTGEIKIMAKAVNNI-VTVSQGNRIAQLILLPLIETD----NKVQQPYRGQGSF 146
Query: 170 GSTGV 174
GS+ +
Sbjct: 147 GSSDI 151
>pdb|2D4L|A Chain A, Crystal Structure Of Truncated In C-Terminal M-Pmv Dutpase
pdb|2D4M|A Chain A, Crystal Structure Of Apo M-Pmv Dutpase
pdb|3TP1|A Chain A, Crystal Structure Of The Precatalytic M-Pmv Dutpase -
Substrate (Dupnpp) Complex
pdb|3TPS|A Chain A, Crystal Structure Of M-Pmv Dutpase Complexed With Dupnpp
Substrate
pdb|3TRN|A Chain A, Crystal Structure Of M-Pmv Dutpase Post-Inversion Product
(Dump) Complex
pdb|3TS6|A Chain A, Crystal Structure Of M-Pmv Dutpase Relaxed End-Product
(Dump) Complex
Length = 152
Score = 57.8 bits (138), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 66/125 (52%), Gaps = 7/125 (5%)
Query: 51 RGSPLAAGYDLSSSTETKV-PARGKALVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDVGA 109
R +P +AG DL S++ T + P G + T + +P T+ I RS + K + V
Sbjct: 33 RATPGSAGLDLXSTSHTVLTPEMGPQALSTGIYGPLPPNTFGLILGRSSITMK-GLQVYP 91
Query: 110 GVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLEVQHLDSTVRGEGGF 169
GVID DY G + ++ +++ V +G+RIAQLI+ ++ D + RG+G F
Sbjct: 92 GVIDNDYTGEIKIMAKAVNNI-VTVSQGNRIAQLILLPLIETD----NKVQQPYRGQGSF 146
Query: 170 GSTGV 174
GS+ +
Sbjct: 147 GSSDI 151
>pdb|3T64|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T64|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T64|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T6Y|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T6Y|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T6Y|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T70|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T70|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T70|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
Length = 181
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 110 GVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLE-VQHLDSTVRGEGG 168
G+IDA YRG + L N SD ++ +K+ D++ QL + P E V+ LD T RGEGG
Sbjct: 106 GLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQL-VSFTGEPLSFELVEELDETSRGEGG 164
Query: 169 FGST 172
FGST
Sbjct: 165 FGST 168
>pdb|1VYQ|A Chain A, Novel Inhibitors Of Plasmodium Falciparum Dutpase Provide
A Platform For Anti-Malarial Drug Design
pdb|1VYQ|B Chain B, Novel Inhibitors Of Plasmodium Falciparum Dutpase Provide
A Platform For Anti-Malarial Drug Design
pdb|1VYQ|C Chain C, Novel Inhibitors Of Plasmodium Falciparum Dutpase Provide
A Platform For Anti-Malarial Drug Design
pdb|2Y8C|A Chain A, Plasmodium Falciparum Dutpase In Complex With A Trityl
Ligand
pdb|2Y8C|B Chain B, Plasmodium Falciparum Dutpase In Complex With A Trityl
Ligand
pdb|2Y8C|C Chain C, Plasmodium Falciparum Dutpase In Complex With A Trityl
Ligand
Length = 173
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 110 GVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLE-VQHLDSTVRGEGG 168
G+IDA YRG + L N SD ++ +K+ D++ QL + P E V+ LD T RGEGG
Sbjct: 106 GLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQL-VSFTGEPLSFELVEELDETSRGEGG 164
Query: 169 FGST 172
FGST
Sbjct: 165 FGST 168
>pdb|3T60|A Chain A, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T60|B Chain B, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
pdb|3T60|C Chain C, 5'-Diphenyl Nucleoside Inhibitors Of Plasmodium Falciparum
Dutpase
Length = 181
Score = 54.3 bits (129), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 110 GVIDADYRGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVTPDVLE-VQHLDSTVRGEGG 168
G+IDA YRG + L N SD ++ +K+ D++ QL + P E V+ LD T RGEGG
Sbjct: 106 GLIDAGYRGEIIAALDNTSDQEYHIKKNDKLVQL-VSFTGEPLSFELVEELDETSRGEGG 164
Query: 169 FGST 172
FGST
Sbjct: 165 FGST 168
>pdb|3H6X|A Chain A, Crystal Structure Of Dutpase From Streptococcus Mutans
pdb|3H6X|B Chain B, Crystal Structure Of Dutpase From Streptococcus Mutans
pdb|3H6X|C Chain C, Crystal Structure Of Dutpase From Streptococcus Mutans
Length = 148
Score = 47.4 bits (111), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 66/143 (46%), Gaps = 13/143 (9%)
Query: 39 VKKLSEKAVLPKRGSPLAAGYDLSSSTETKVPARGKALVPTDLSIAIPEGTYAHIAPRSG 98
+ +++ +LPKR + AAGYDL + T++ A LVPT + G ++ RS
Sbjct: 10 ITDYTDENLLPKRETAHAAGYDLKVAERTEISAGAIVLVPTGVKAYXQVGEVLYLFDRSS 69
Query: 99 LAWKHSMDV--GAGVIDADY------RGPVGVILFNHSDVDFEVKRGDRIAQLIIEKIVT 150
K + + GVID DY G + N +D ++ G+R+ Q +
Sbjct: 70 NPRKKGLVLINSVGVIDGDYYNNPNNEGHIFAQXKNXTDQTVVLEAGERVVQ----GVFX 125
Query: 151 PDVLEVQHLDSTVRGEGGFGSTG 173
P +L + +T GGFGSTG
Sbjct: 126 PFLL-IDGDKATGTRTGGFGSTG 147
>pdb|1SHN|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHN|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Phosphate Bound
pdb|1SHQ|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
pdb|1SHQ|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase With
Magnesium In M3
Length = 478
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 76 LVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDV 107
+ T ++ A P GTYAH+A R W++ DV
Sbjct: 142 VTSTRVTHATPAGTYAHVADRD---WENDSDV 170
>pdb|1K7H|A Chain A, Crystal Structure Of Shrimp Alkaline Phosphatase
pdb|1K7H|B Chain B, Crystal Structure Of Shrimp Alkaline Phosphatase
Length = 476
Score = 27.7 bits (60), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 76 LVPTDLSIAIPEGTYAHIAPRSGLAWKHSMDV 107
+ T ++ A P GTYAH+A R W++ DV
Sbjct: 142 VTSTRVTHATPAGTYAHVADRD---WENDSDV 170
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.133 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,454,562
Number of Sequences: 62578
Number of extensions: 223894
Number of successful extensions: 463
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 52
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 48 (23.1 bits)