BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030636
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WKO|A Chain A, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
pdb|1WKO|B Chain B, Terminal Flower 1 (Tfl1) From Arabidopsis Thaliana
Length = 180
Score = 180 bits (457), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 91/175 (52%), Positives = 122/175 (69%), Gaps = 5/175 (2%)
Query: 2 ARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPA 61
R +EPL++GRV+GDV+D FTP T+M V Y KQV+NG E+ PS+ + KP V+IH
Sbjct: 9 TRVIEPLIMGRVVGDVLDFFTPTTKMNVSYNKKQVSNGHELFPSSVSSKPRVEIHGGDLR 68
Query: 62 SSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRY 119
S +TLVM+DPD P PS+P +E LHWIV +IP +DAT KE+V+Y P+P GIHR+
Sbjct: 69 S--FFTLVMIDPDVPGPSDPFLKEHLHWIVTNIPGTTDATFGKEVVSYELPRPSIGIHRF 126
Query: 120 VFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
VF LF QK + + P +R +F+TR+FA + L PVAAV+FN+Q+E A RKR
Sbjct: 127 VFVLFRQKQRRVIFPNIP-SRDHFNTRKFAVEYDLGLPVAAVFFNAQRETAARKR 180
>pdb|1QOU|A Chain A, Cen (Centroradialis) Protein From Antirrhinum
pdb|1QOU|B Chain B, Cen (Centroradialis) Protein From Antirrhinum
Length = 181
Score = 167 bits (423), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 114/178 (64%), Gaps = 9/178 (5%)
Query: 4 SMEPLVVGRVIGDVVDMFTPATEMTVHYGT----KQVANGCEIKPSASADKPSVQIHAPP 59
S +PLV+GRVIGDVVD FT +M+V Y + K V NG E+ PSA P V++H
Sbjct: 6 SSDPLVIGRVIGDVVDHFTSTVKMSVIYNSNNSIKHVYNGHELFPSAVTSTPRVEVHGGD 65
Query: 60 PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIH 117
S +TL+M DPD P PS+P RE LHWIV DIP +D++ KE+V+Y P+P GIH
Sbjct: 66 MRS--FFTLIMTDPDVPGPSDPYLREHLHWIVTDIPGTTDSSFGKEVVSYEMPRPNIGIH 123
Query: 118 RYVFALFNQKGKVMAGCRPP-DARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRKR 174
R+VF LF QK + A PP R F+TR+F +N L PVAAV+FN Q+E A R+R
Sbjct: 124 RFVFLLFKQKKRGQAMLSPPVVCRDGFNTRKFTQENELGLPVAAVFFNCQRETAARRR 181
>pdb|3AXY|A Chain A, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|B Chain B, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|G Chain G, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
pdb|3AXY|H Chain H, Structure Of Florigen Activation Complex Consisting Of
Rice Florigen Hd3a, 14-3-3 Protein Gf14 And Rice Fd
Homolog Osfd1
Length = 170
Score = 164 bits (415), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/168 (50%), Positives = 111/168 (66%), Gaps = 6/168 (3%)
Query: 3 RSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPAS 62
R +PLVVGRV+GDV+D F +T + V YG+K V+NG E+KPS +P V++ +
Sbjct: 6 RDRDPLVVGRVVGDVLDAFVRSTNLKVTYGSKTVSNGLELKPSMVTHQPRVEVGGNDMRT 65
Query: 63 SNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT--KELVAYMGPQPPTGIHRYV 120
YTLVMVDPDAPSPS+P RE+LHW+V DIP + A+ +E+++Y P+P GIHR V
Sbjct: 66 --FYTLVMVDPDAPSPSDPNLREYLHWLVTDIPGTTAASFGQEVMSYESPRPTMGIHRLV 123
Query: 121 FALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 168
F LF Q G+ P R NF+T+ FA L PVAAVYFNSQ+E
Sbjct: 124 FVLFQQLGR--QTVYAPGWRQNFNTKDFAELYNLGSPVAAVYFNSQRE 169
>pdb|1WKP|A Chain A, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|B Chain B, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|C Chain C, Flowering Locus T (Ft) From Arabidopsis Thaliana
pdb|1WKP|D Chain D, Flowering Locus T (Ft) From Arabidopsis Thaliana
Length = 171
Score = 155 bits (392), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 80/165 (48%), Positives = 102/165 (61%), Gaps = 6/165 (3%)
Query: 6 EPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNL 65
+PL+V RV+GDV+D F + + V YG ++V NG ++PS +KP V+I N
Sbjct: 10 DPLIVSRVVGDVLDPFNRSITLKVTYGQREVTNGLNLRPSQVQNKPRVEIGGE--DLRNF 67
Query: 66 YTLVMVDPDAPSPSEPRYREWLHWIVVDIP--EGSDATKELVAYMGPQPPTGIHRYVFAL 123
YTLVMVDPD PSPS P RE+LHW+V DIP G+ E+V+Y P P GIHR VF L
Sbjct: 68 YTLVMVDPDVPSPSNPHLREYLHWLVTDIPATTGTTFGNEIVSYENPSPTAGIHRVVFIL 127
Query: 124 FNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE 168
F Q G+ P R NF+TR FA L PVAAV++NSQ+E
Sbjct: 128 FRQLGR--QTVYAPGWRQNFNTREFAEIYNLGLPVAAVFYNSQRE 170
>pdb|2JYZ|A Chain A, Cg7054 Solution Structure
Length = 179
Score = 110 bits (276), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 69/174 (39%), Positives = 96/174 (55%), Gaps = 14/174 (8%)
Query: 13 VIGDVVDMFTPATEMTVHYGTK-QVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMV 71
++ DV+D PA + V YG +V G E+ P+ D+P V SNL TL+MV
Sbjct: 4 IVPDVLDA-VPAGTIKVIYGDDLEVKQGNELTPTQVKDQPIVSWSGLE-GKSNLLTLLMV 61
Query: 72 DPDAPSPSEPRYREWLHWIVVDIP---EGSDATKELVAYMGPQPP--TGIHRYVFALFNQ 126
DPDAP+ +P+YRE LHW VV+IP E L Y+G PP TG+HRY+F L+ Q
Sbjct: 62 DPDAPTRQDPKYREILHWSVVNIPGSNENPSGGHSLADYVGSGPPKDTGLHRYIFLLYRQ 121
Query: 127 KGKV----MAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKE--VAVRKR 174
+ K+ R NF+ R FAA +GL P+AA Y+ +Q + V +R +
Sbjct: 122 ENKIEETPTISNTTRTGRLNFNARDFAAKHGLGEPIAANYYQAQYDDYVPIRNK 175
>pdb|1A44|A Chain A, Phosphatidylethanolamine Binding Protein From Calf Brain
Length = 185
Score = 78.2 bits (191), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 23 PATEMTVHYGTKQVAN-GCEIKPSASADKP-SVQIHAPPPASSNLYTLVMVDPDAPSPSE 80
P + V YG +V G + P+ ++P S+ P LYTLV+ DPDAPS +
Sbjct: 20 PQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPG--KLYTLVLTDPDAPSRKD 77
Query: 81 PRYREWLHWIVVDIPEGSDATKELVA-YMGPQPP--TGIHRYVFALFNQKGKV-----MA 132
P+YREW H++VV++ + ++ +++ Y+G PP TG+HRYV+ ++ Q+G + +
Sbjct: 78 PKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPIL 137
Query: 133 GCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 173
R D R F F L PVA + ++ + V K
Sbjct: 138 SNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPK 178
>pdb|1B7A|A Chain A, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
pdb|1B7A|B Chain B, Structure Of The Phosphatidylethanolamine-Binding Protein
From Bovine Brain
Length = 186
Score = 77.8 bits (190), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/161 (32%), Positives = 84/161 (52%), Gaps = 12/161 (7%)
Query: 23 PATEMTVHYGTKQVAN-GCEIKPSASADKP-SVQIHAPPPASSNLYTLVMVDPDAPSPSE 80
P + V YG +V G + P+ ++P S+ P LYTLV+ DPDAPS +
Sbjct: 20 PQHPLQVKYGGAEVDELGKVLTPTQVKNRPTSITWDGLDPG--KLYTLVLTDPDAPSRKD 77
Query: 81 PRYREWLHWIVVDIPEGSDATKELVA-YMGPQPP--TGIHRYVFALFNQKGKV-----MA 132
P+YREW H++VV++ + ++ +++ Y+G PP TG+HRYV+ ++ Q+G + +
Sbjct: 78 PKYREWHHFLVVNMKGNNISSGTVLSDYVGSGPPKGTGLHRYVWLVYEQEGPLKCDEPIL 137
Query: 133 GCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 173
R D R F F L PVA + ++ + V K
Sbjct: 138 SNRSGDHRGKFKVASFRKKYELGAPVAGTCYQAEWDDYVPK 178
>pdb|2IQX|A Chain A, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|B Chain B, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
pdb|2IQX|C Chain C, Rat Phosphatidylethanolamine-Binding Protein Containing
The S153e Mutation In The Complex With
O-Phosphorylethanolamine
Length = 187
Score = 76.6 bits (187), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 16/163 (9%)
Query: 23 PATEMTVHYGTKQVAN-GCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEP 81
P + V YG V G + P+ ++PS I LYTLV+ DPDAPS +P
Sbjct: 21 PQHALRVDYGGVTVDELGKVLTPTQVMNRPS-SISWDGLDPGKLYTLVLTDPDAPSRKDP 79
Query: 82 RYREWLHWIVVDIPEGSDATKE--LVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPP 137
++REW H++VV++ +G+D + L Y+G PP TG+HRYV+ ++ Q+ + C P
Sbjct: 80 KFREWHHFLVVNM-KGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPL--NCDEP 136
Query: 138 -------DARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 173
D R F F L PVA F ++ + +V K
Sbjct: 137 ILSNKSGDNRGKFKVEEFRKKYHLGAPVAGTCFQAEWDDSVPK 179
>pdb|2IQY|A Chain A, Rat Phosphatidylethanolamine-Binding Protein
Length = 190
Score = 76.3 bits (186), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 55/163 (33%), Positives = 82/163 (50%), Gaps = 16/163 (9%)
Query: 23 PATEMTVHYGTKQVAN-GCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEP 81
P + V YG V G + P+ ++PS I LYTLV+ DPDAPS +P
Sbjct: 24 PQHALRVDYGGVTVDELGKVLTPTQVMNRPS-SISWDGLDPGKLYTLVLTDPDAPSRKDP 82
Query: 82 RYREWLHWIVVDIPEGSDATKE--LVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPP 137
++REW H++VV++ +G+D + L Y+G PP TG+HRYV+ ++ Q+ + C P
Sbjct: 83 KFREWHHFLVVNM-KGNDISSGTVLSEYVGSGPPKDTGLHRYVWLVYEQEQPL--NCDEP 139
Query: 138 -------DARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 173
D R F F L PVA F ++ + +V K
Sbjct: 140 ILSNKSGDNRGKFKVESFRKKYHLGAPVAGTCFQAEWDDSVPK 182
>pdb|1BD9|A Chain A, Human Phosphatidylethanolamine Binding Protein
pdb|1BD9|B Chain B, Human Phosphatidylethanolamine Binding Protein
pdb|1BEH|A Chain A, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|1BEH|B Chain B, Human Phosphatidylethanolamine Binding Protein In Complex
With Cacodylate
pdb|2QYQ|A Chain A, Human Raf Kinase Inhibitor Protein (Rkip) In Complex With
O- Phosphotyrosine
pdb|2L7W|A Chain A, Solution Structure Of The Human Raf-1 Kinase Inhibitor
Protein
Length = 187
Score = 75.1 bits (183), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 10/121 (8%)
Query: 62 SSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKELVA--YMGPQPP--TGIH 117
S LYTLV+ DPDAPS +P+YREW H++VV++ +G+D + V Y+G PP TG+H
Sbjct: 60 SGKLYTLVLTDPDAPSRKDPKYREWHHFLVVNM-KGNDISSGTVLSDYVGSGPPKGTGLH 118
Query: 118 RYVFALFNQKGKV-----MAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVR 172
RYV+ ++ Q + + R D R F F L+ PVA + ++ + V
Sbjct: 119 RYVWLVYEQDRPLKCDEPILSNRSGDHRGKFKVASFRKKYELRAPVAGTCYQAEWDDYVP 178
Query: 173 K 173
K
Sbjct: 179 K 179
>pdb|1KN3|A Chain A, Murine Pebp-2 (Phosphatidylethanolamine-Binding Protein-2)
Length = 183
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 65/120 (54%), Gaps = 10/120 (8%)
Query: 63 SNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKE--LVAYMGPQPP--TGIHR 118
LYTL++ DPDAPS +P YREW H++VV++ +G+D + L Y+G PP TG+HR
Sbjct: 57 GKLYTLILTDPDAPSRKKPVYREWHHFLVVNM-KGNDISSGNVLSDYVGSGPPKGTGLHR 115
Query: 119 YVFALFNQKGKV-----MAGCRPPDARSNFSTRRFAADNGLQPPVAAVYFNSQKEVAVRK 173
YV+ ++ Q + + R D R F T F L PVA + ++ + V K
Sbjct: 116 YVWLVYQQDKPLRCDEPILTNRSGDHRGKFKTAAFRKKYHLGAPVAGTCYQAEWDSYVPK 175
>pdb|1WPX|B Chain B, Crystal Structure Of Carboxypeptidase Y Inhibitor
Complexed With The Cognate Proteinase
Length = 220
Score = 63.9 bits (154), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 68/151 (45%), Gaps = 37/151 (24%)
Query: 13 VIGDVVD--MFTPATEMTVHYGTKQ-VANGCEIKPSASADKPSVQI-------------H 56
++ DV+ F P+ + V Y + VA G + + KP Q +
Sbjct: 21 ILEDVIHDTSFQPSGILAVEYSSSAPVAMGNTLPTEKARSKPQFQFTFNKQMQKSVPQAN 80
Query: 57 APPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKE------------- 103
A P +L+TLVM DPDAPS ++ ++ E+ H + D+ ++AT E
Sbjct: 81 AYVPQDDDLFTLVMTDPDAPSKTDHKWSEFCHLVECDLKLLNEATHETSGATEFFASEFN 140
Query: 104 ------LVAYMGPQPPTGI--HRYVFALFNQ 126
L+ YMGP PP G HRYVF L+ Q
Sbjct: 141 TKGSNTLIEYMGPAPPKGSGPHRYVFLLYKQ 171
>pdb|2R77|A Chain A, Crystal Structure Of Phosphatidylethanolamine-Binding
Protein, Pfl0955c, From Plasmodium Falciparum
Length = 205
Score = 47.0 bits (110), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 18/103 (17%)
Query: 34 KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVD 93
K+V +G + + + P + P + L MVDPD PS P +E++HW+V
Sbjct: 54 KEVNHGNVLDIAGTGSVPRNIKFSEEPPDGYCFVLFMVDPDYPSRLRPDGKEYIHWVVSG 113
Query: 94 IPEGSDATKELVA-----------YMGP--QPPTGIHRYVFAL 123
I TKEL+ Y+GP + TG+HR F +
Sbjct: 114 I-----KTKELIKGTQKNCVTILPYVGPSIKKGTGLHRISFII 151
>pdb|2GZQ|A Chain A, Phosphatidylethanolamine-Binding Protein From Plasmodium
Vivax
Length = 200
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/98 (30%), Positives = 46/98 (46%), Gaps = 8/98 (8%)
Query: 34 KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVD 93
K+V +G + + + P + P Y L +DPD PS P R+++HW V
Sbjct: 47 KEVNHGNILDLAGTGSVPRNIKFSEEPPEDYCYILFXIDPDFPSRRRPDGRDYVHWAVSG 106
Query: 94 IP-----EGSDATK-ELVAYMGP--QPPTGIHRYVFAL 123
I +G+D L+ Y+GP + TG+HR F L
Sbjct: 107 IKSKELVKGTDKNCITLLPYVGPSIKKGTGLHRISFIL 144
>pdb|1VI3|A Chain A, Crystal Structure Of An Hypothetical Protein
Length = 170
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 27/86 (31%)
Query: 60 PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKE-----LVA-------- 106
PA + + + DPDAP+ S W HW+VV++P + + LVA
Sbjct: 42 PAGTKSFVVTCYDPDAPTGSG-----WWHWVVVNLPADTRVLPQGFGSGLVAXPDGVLQT 96
Query: 107 --------YMGPQPPTG-IHRYVFAL 123
Y G PP G HRY+F +
Sbjct: 97 RTDFGKTGYDGAAPPKGETHRYIFTV 122
>pdb|1FJJ|A Chain A, Crystal Structure Of E.Coli Ybhb Protein, A New Member Of
The Mammalian Pebp Family
Length = 159
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 27/86 (31%)
Query: 60 PASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDATKE-----LVA-------- 106
PA + + + DPDAP+ S W HW+VV++P + + LVA
Sbjct: 41 PAGTKSFVVTCYDPDAPTGSG-----WWHWVVVNLPADTRVLPQGFGSGLVAXPDGVLQT 95
Query: 107 --------YMGPQPPTG-IHRYVFAL 123
Y G PP G HRY+F +
Sbjct: 96 RTDFGKTGYDGAAPPKGETHRYIFTV 121
>pdb|3N08|A Chain A, Crystal Structure Of A Putative
Phosphatidylethanolamine-Binding Protein (Pebp) Homolog
Ct736 From Chlamydia Trachomatis DUW-3CX
pdb|3N08|B Chain B, Crystal Structure Of A Putative
Phosphatidylethanolamine-Binding Protein (Pebp) Homolog
Ct736 From Chlamydia Trachomatis DUW-3CX
Length = 153
Score = 34.3 bits (77), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 34/82 (41%), Gaps = 21/82 (25%)
Query: 60 PASSNLYTLVMVDPDAPSPSEPRYRE---WLHWIVVDIP-------EGSDA-------TK 102
P + L++ DPD P P RE W+HWIV ++ EG+ T
Sbjct: 38 PREAKSLVLIVEDPDVP----PSVREDGLWIHWIVYNLSPVVSNLAEGAQIFAVQGLNTA 93
Query: 103 ELVAYMGPQPPTGIHRYVFALF 124
+ Y P PP HRY F +
Sbjct: 94 GEIGYCPPCPPDAKHRYYFYAY 115
>pdb|1FUX|A Chain A, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
pdb|1FUX|B Chain B, Crystal Structure Of E.Coli Ybcl, A New Member Of The
Mammalian Pebp Family
Length = 166
Score = 33.1 bits (74), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 10/57 (17%)
Query: 39 GCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIP 95
GCE PS+ P + + + + + DPDAP+ S W HW VV+IP
Sbjct: 26 GCE----GGNTSPSLTWSGVPEGTKS-FAVTVYDPDAPTGSG-----WWHWTVVNIP 72
>pdb|2B9E|A Chain A, Human Nsun5 Protein
Length = 309
Score = 29.6 bits (65), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Query: 75 APSPSEPRYREWLHWIVVD-IPEGSDATKELVAYMGPQPPTGIHRYVFALFNQKGKVMAG 133
A SPS+PRY E +H+I++D GS + G P+ + + A F Q+ A
Sbjct: 164 AVSPSDPRYHE-VHYILLDPSCSGSGMPSRQLEEPGAGTPSPVRLHALAGFQQRALCHAL 222
Query: 134 CRPPDARSNFST 145
P R +ST
Sbjct: 223 TFPSLQRLVYST 234
>pdb|2VOZ|A Chain A, Apo Futa2 From Synechocystis Pcc6803
pdb|2VOZ|B Chain B, Apo Futa2 From Synechocystis Pcc6803
pdb|2VP1|A Chain A, Fe-Futa2 From Synechocystis Pcc6803
pdb|2VP1|B Chain B, Fe-Futa2 From Synechocystis Pcc6803
Length = 346
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 62 SSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDI---PEGSDATK 102
SSN+Y L + EP R WL +V + PEG+D +
Sbjct: 165 SSNVYNLSLTASRIAIHGEPETRRWLQGLVGNFARQPEGNDTAQ 208
>pdb|2A98|A Chain A, Crystal Structure Of The Catalytic Domain Of Human
Inositol 1,4,5- Trisphosphate 3-kinase C
Length = 259
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 40 CEIKPSASADKPSVQIHAPPPASSNLY-TLVMVDPDAPSPSE--------PRYREW 86
C++ ++ V+ P ++Y +V VDP AP+P E PRY +W
Sbjct: 61 CKMGSRTYLEEELVKARERPRPRKDMYEKMVAVDPGAPTPEEHAQGAVTKPRYMQW 116
>pdb|1UOZ|A Chain A, Structure Of The Endoglucanase Cel6 From Mycobacterium
Tuberculosis In Complex With Thiocellopentaose At 1.1
Angstrom
Length = 315
Score = 26.9 bits (58), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 130 VMAGCRPPDARSN-FSTRRFAADNGLQPPVAAVYFNS 165
MA C PD R F R+A D + P AAVY ++
Sbjct: 144 AMADCLSPDQRQERFDLVRYAVDTLTRDPAAAVYVDA 180
>pdb|1UP0|A Chain A, Structure Of The Endoglucanase Cel6 From Mycobacterium
Tuberculosis In Complex With Cellobiose At 1.75 Angstrom
Length = 294
Score = 26.9 bits (58), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 130 VMAGCRPPDARSN-FSTRRFAADNGLQPPVAAVYFNS 165
MA C PD R F R+A D + P AAVY ++
Sbjct: 123 AMADCLSPDQRQERFDLVRYAVDTLTRDPAAAVYVDA 159
>pdb|1UP3|A Chain A, Structure Of The Endoglucanase Cel6 From Mycobacterium
Tuberculosis In Complex With
Methyl-Cellobiosyl-4-Deoxy-4-Thio-Beta-D-Cellobioside At
1.6 Angstrom
Length = 294
Score = 26.9 bits (58), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 130 VMAGCRPPDARSN-FSTRRFAADNGLQPPVAAVYFNS 165
MA C PD R F R+A D + P AAVY ++
Sbjct: 123 AMADCLSPDQRQERFDLVRYAVDTLTRDPAAAVYVDA 159
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,512,801
Number of Sequences: 62578
Number of extensions: 231467
Number of successful extensions: 533
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 486
Number of HSP's gapped (non-prelim): 28
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)