Query 030636
Match_columns 174
No_of_seqs 133 out of 1260
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 16:44:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030636.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030636hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00169 CETS family protein; 100.0 5.6E-53 1.2E-57 323.8 18.0 170 1-174 2-173 (175)
2 KOG3346 Phosphatidylethanolami 100.0 6.8E-51 1.5E-55 312.1 14.1 172 1-173 1-177 (185)
3 cd00866 PEBP_euk PhosphatidylE 100.0 1.5E-37 3.2E-42 234.3 15.5 139 26-165 2-154 (154)
4 PF01161 PBP: Phosphatidyletha 100.0 3.5E-28 7.6E-33 181.6 11.1 127 25-164 2-146 (146)
5 cd00457 PEBP PhosphatidylEthan 99.9 9.3E-25 2E-29 165.7 11.8 124 34-165 5-159 (159)
6 PRK10257 putative kinase inhib 99.8 8.8E-20 1.9E-24 138.0 11.6 108 33-153 5-144 (158)
7 PRK09818 putative kinase inhib 99.8 4E-19 8.7E-24 137.2 11.1 111 27-152 22-166 (183)
8 cd00865 PEBP_bact_arch Phospha 99.8 1.5E-18 3.2E-23 130.5 13.0 106 36-154 7-138 (150)
9 COG1881 Phospholipid-binding p 99.8 1.9E-18 4E-23 132.4 10.5 108 32-151 26-156 (174)
10 TIGR00481 Raf kinase inhibitor 99.8 4.9E-18 1.1E-22 126.4 11.0 94 48-154 13-129 (141)
11 PRK04243 50S ribosomal protein 37.8 45 0.00097 26.1 3.4 43 49-94 109-155 (196)
12 KOG3586 TBX1 and related T-box 29.8 72 0.0016 27.8 3.7 53 37-94 95-154 (437)
13 PTZ00026 60S ribosomal protein 26.8 66 0.0014 25.4 2.7 43 49-94 109-155 (204)
14 COG1632 RPL15A Ribosomal prote 26.2 96 0.0021 24.2 3.4 44 49-95 108-155 (195)
15 cd07927 RHD-n_NFAT_like N-term 21.4 3.7E+02 0.0081 20.4 6.0 66 22-97 8-73 (161)
No 1
>PLN00169 CETS family protein; Provisional
Probab=100.00 E-value=5.6e-53 Score=323.82 Aligned_cols=170 Identities=52% Similarity=0.902 Sum_probs=156.5
Q ss_pred CcccccccccCCcccccCCCCCCCeEEEEEECCeeecCCCccCCCCCCCCCeEEEeCCCCCCCcceEEEEECCCCCCCCC
Q 030636 1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSE 80 (174)
Q Consensus 1 ~~~~~~~l~~~~i~pdvl~~f~P~~~L~V~y~~~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~ 80 (174)
|.+++++|+.++||||||+.|.|+..|+|+|++..|.+|+.|++++++.+|+|+|.+.+. +++|||+|+|||+|++.+
T Consensus 2 ~~~~~~~l~~~~iipdvid~f~P~~~L~V~y~s~~V~~G~~l~p~~t~~~P~i~~~~~~~--~~~ytlim~DpDaP~~~~ 79 (175)
T PLN00169 2 SPRDRDPLVVGRVVGDVLDPFTRSISLRVTYGSREVNNGCELKPSQVVNQPRVDIGGEDL--RTFYTLVMVDPDAPSPSN 79 (175)
T ss_pred CcccccchhhCCcCCcccCCcCCceEEEEEECCcCcCCcCCCCHHHhccCCEEEEccCCC--CceeEEEEECCCCCCCCC
Confidence 788999999999999999999999999999999999999999999999999999986543 578999999999999999
Q ss_pred CCCceeEEEEEeeeCCCCCC--CcceecccCCCCCCCCceEEEEEEeeCCCCcCCCCCCCCCCCCCHHHHHHHhCCCCce
Q 030636 81 PRYREWLHWIVVDIPEGSDA--TKELVAYMGPQPPTGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPV 158 (174)
Q Consensus 81 ~~~~~~lHwl~~ni~~~~~~--~~~~~~Y~~P~P~~G~HRY~fll~~q~~~~~~~~~~~~~R~~Fn~~~f~~~~~L~~pv 158 (174)
+++++||||+++||+++... .+.+++|+||+|++|+|||+|+||+|++.+... .+..|.+||+++|+++++|+.||
T Consensus 80 ~~~~~~~HW~v~nip~~~~~~~g~~~~~Y~~P~Pp~G~HRYvflly~Q~~~~~~~--~~~~R~~F~~~~Fa~~~~L~~Pv 157 (175)
T PLN00169 80 PNLREYLHWLVTDIPATTGATFGQEVVCYESPRPTAGIHRFVFVLFRQLGRQTVY--APGWRQNFNTRDFAELYNLGSPV 157 (175)
T ss_pred CCcccEEEEEEeCCccccccccCccceeecCCCCCCCceeEEEEEEEcCCCcccC--CcccCCCcCHHHHHHHhCCCCce
Confidence 99999999999999987543 277899999999999999999999999887643 35679999999999999999999
Q ss_pred EEeEEEEeeCCcCCCC
Q 030636 159 AAVYFNSQKEVAVRKR 174 (174)
Q Consensus 159 a~~~f~~~~d~~~~~~ 174 (174)
|||||++||++++++|
T Consensus 158 A~nfF~a~~~~~~~~~ 173 (175)
T PLN00169 158 AAVYFNCQRESGSGGR 173 (175)
T ss_pred EEEEEEEecCCcCCcc
Confidence 9999999999998876
No 2
>KOG3346 consensus Phosphatidylethanolamine binding protein [General function prediction only]
Probab=100.00 E-value=6.8e-51 Score=312.14 Aligned_cols=172 Identities=42% Similarity=0.796 Sum_probs=157.2
Q ss_pred CcccccccccCCcccccCCCCCCCeEEEEEECC-eeecCCCccCCCCCCCCCeEEEeCCCCCCCcceEEEEECCCCCCCC
Q 030636 1 MARSMEPLVVGRVIGDVVDMFTPATEMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPS 79 (174)
Q Consensus 1 ~~~~~~~l~~~~i~pdvl~~f~P~~~L~V~y~~-~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~ 79 (174)
|..+.+.+.+++|++|||+.+.|+..|+|+|++ ..|++|+.|+++++...|.|+|.+.. ..+++|||||+|||||+++
T Consensus 1 ~~~~~~~~~~~~iv~Dvl~~~~p~~~l~V~y~~~~~v~~G~~l~pt~~~~~P~v~~~~~a-~~~~~yTLvm~DPDaPsr~ 79 (185)
T KOG3346|consen 1 MSDIRDPLNKHRIVPDVLDDFEPSVKLNVTYNSDIVVENGNELTPTQVKNRPIVSWDGFA-DPGSLYTLVMTDPDAPSRS 79 (185)
T ss_pred CcchhhhhhccCcchhhhccCCCceEEEEEeCCCeeecCCCEeCchhhccCCeEEEcCcC-CCCCeEEEEEeCCCCCCCC
Confidence 677889999999999999999999999999986 89999999999999999999999752 2378999999999999999
Q ss_pred CCCCceeEEEEEeeeCCCCC-C-CcceecccCCCCC--CCCceEEEEEEeeCCCCcCCCCCCCCCCCCCHHHHHHHhCCC
Q 030636 80 EPRYREWLHWIVVDIPEGSD-A-TKELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQ 155 (174)
Q Consensus 80 ~~~~~~~lHwl~~ni~~~~~-~-~~~~~~Y~~P~P~--~G~HRY~fll~~q~~~~~~~~~~~~~R~~Fn~~~f~~~~~L~ 155 (174)
+|++++|||||++|||+++. + +++++.|+||.|+ +|.|||+|+||+|+.+.+.....+..|.+||+++|+++++|+
T Consensus 80 ~p~~rE~lHWlV~nIPg~~~~~~G~~i~~Y~~P~Pp~~tG~HRyVfll~rQ~~~~~~~~~~~~~R~~F~~~~F~~~~~lg 159 (185)
T KOG3346|consen 80 DPKFREWLHWLVTNIPGTDGISKGQEISEYLGPGPPKGTGLHRYVFLLYRQPGRLDSDEPSPLSRGNFNTRKFAKKYELG 159 (185)
T ss_pred CCcceeEEEEEEEeecCCccccCCeEeeeeeCCCCCCCCCceEEEEEEEEcCCccccccCCCCcccceeHHHHHHHhccC
Confidence 99999999999999999883 3 2999999999996 899999999999999988754335789999999999999999
Q ss_pred CceEEeEEEEeeCCcCCC
Q 030636 156 PPVAAVYFNSQKEVAVRK 173 (174)
Q Consensus 156 ~pva~~~f~~~~d~~~~~ 173 (174)
+||||+||++|||+.+.+
T Consensus 160 ~PvA~~~f~aq~d~~~~~ 177 (185)
T KOG3346|consen 160 TPVAGNFFQAQWDDYVPK 177 (185)
T ss_pred CchhhheehhhcchhhHH
Confidence 999999999999997754
No 3
>cd00866 PEBP_euk PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in eukaryotes. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in eukaryotes. Members here include those in plants such as Arabidopsis thaliana FLOWERING LOCUS (FT) and TERMINAL FLOWER1 (FT1) which function as a promoter and a repressor of the floral transitions, respectively as well as the mammalian Raf kinase inhibitory protein (RKIP) which inhibits MAP kinase (Raf-MEK-ERK), G protein-coupled receptor (GPCR) kinase and NFkappaB signaling cascades. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer).
Probab=100.00 E-value=1.5e-37 Score=234.31 Aligned_cols=139 Identities=47% Similarity=0.861 Sum_probs=124.2
Q ss_pred EEEEEECC-eeecCCCccCCCCCCCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCCCCC----
Q 030636 26 EMTVHYGT-KQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDA---- 100 (174)
Q Consensus 26 ~L~V~y~~-~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~---- 100 (174)
.|.|+|++ ..+.+|+.|++++++.+|+|+|..... .+++|+|||+|||+|.+.++.++++||||++||+.+...
T Consensus 2 ~l~v~y~~~~~v~~G~~l~~~~~~~~P~i~~~~~~~-~~~~y~lvm~DpD~p~~~~~~~~~~lHwl~~ni~~~~~~~~~~ 80 (154)
T cd00866 2 DLTVSYGSSGVVTPGNLLTPSETQKAPTVSFSSEDP-PDKLYTLVMVDPDAPSRDDPKFREWLHWLVTNIPGSDTTTGLV 80 (154)
T ss_pred eEEEEECCCcCcCCCCCCCHHHhCcCCeEEEecCCC-CCCeEEEEEECCCCCCCCCCCCCCEEEEEEeCcCCcccccccc
Confidence 68999998 899999999999999999999998763 367899999999999999999999999999999987642
Q ss_pred --CcceecccCCCCC--CCCceEEEEEEeeCCCCcCCCC-----CCCCCCCCCHHHHHHHhCCCCceEEeEEEE
Q 030636 101 --TKELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCR-----PPDARSNFSTRRFAADNGLQPPVAAVYFNS 165 (174)
Q Consensus 101 --~~~~~~Y~~P~P~--~G~HRY~fll~~q~~~~~~~~~-----~~~~R~~Fn~~~f~~~~~L~~pva~~~f~~ 165 (174)
...+++|+||+|+ +|+|||+|+||+|+..+.+... ....|.+||+++|++++||+.|||+|||++
T Consensus 81 ~~~~~~~~Y~~P~Pp~g~g~HRY~fll~~q~~~~~~~~~~~~~~~~~~r~~F~~~~F~~~~~L~~pva~~~f~~ 154 (154)
T cd00866 81 SKGEVLVPYLGPGPPKGTGPHRYVFLLFKQPGGLDFPESKLPPTSGLGRRGFDVREFAKKNGLGLPVAANFFQV 154 (154)
T ss_pred CCCCCcceeeCCCCCCCCCCccEEEEEEEeCCccCccccccccCCccccCCcCHHHHHHHhCCCCcEEEEEEeC
Confidence 2788999999995 5799999999999998887641 356899999999999999999999999985
No 4
>PF01161 PBP: Phosphatidylethanolamine-binding protein; InterPro: IPR008914 The PEBP (PhosphatidylEthanolamine-Binding Protein) family is a highly conserved group of proteins that have been identified in numerous tissues in a wide variety of organisms, including bacteria, yeast, nematodes, plants, drosophila and mammals. The various functions described for members of this family include lipid binding, neuronal development [], serine protease inhibition [], the control of the morphological switch between shoot growth and flower structures [], and the regulation of several signalling pathways such as the MAP kinase pathway [], and the NF-kappaB pathway []. The control of the latter two pathways involves the PEBP protein RKIP, which interacts with MEK and Raf-1 to inhibit the MAP kinase pathway, and with TAK1, NIK, IKKalpha and IKKbeta to inhibit the NF-kappaB pathway. Other PEBP-like proteins that show strong structural homology to PEBP include Escherichia coli YBHB and YBCL, the Rattus norvegicus (Rat) neuropeptide HCNP, and Antirrhinum majus (Garden snapdragon) protein centroradialis (CEN). Structures have been determined for several members of the PEBP-like family, all of which show extensive fold conservation. The structure consists of a large central beta-sheet flanked by a smaller beta-sheet on one side, and an alpha helix on the other. Sequence alignments show two conserved central regions, CR1 and CR2, that form a consensus signature for the PEBP family. These two regions form part of the ligand-binding site, which can accommodate various anionic groups. The N- and C-terminal regions are the least conserved, and may be involved in interactions with different protein partners. The N-terminal residues 2-12 form the natural cleavage peptide HCNP involved in neuronal development. The C-terminal region is deleted in plant and bacterial PEBP homologues, and may help control accessibility to the active site. ; PDB: 1BD9_A 1BEH_A 2QYQ_A 2L7W_A 3AXY_A 2IQX_C 2IQY_A 1KN3_A 1FUX_A 1B7A_A ....
Probab=99.95 E-value=3.5e-28 Score=181.57 Aligned_cols=127 Identities=38% Similarity=0.791 Sum_probs=101.2
Q ss_pred eEEEEEE-CCeeecCCCccCCCC-CCCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeC-------
Q 030636 25 TEMTVHY-GTKQVANGCEIKPSA-SADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIP------- 95 (174)
Q Consensus 25 ~~L~V~y-~~~~v~~G~~l~~~~-t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~------- 95 (174)
..|.|+| ++..+.+|+.+++.. +...|+ ..+.|+|+|+|+|+|.+.++..+++||||++||+
T Consensus 2 ~~L~v~f~~~~~~~~G~~~sp~~~~~~~P~---------~~~~y~lim~D~D~P~~~~~~~~~~~Hwl~~ni~~~~~~~~ 72 (146)
T PF01161_consen 2 GKLPVKFTGNKSVCPGNNVSPPLSWQNAPT---------GTKSYTLIMVDPDAPSRENPSFGPFLHWLVTNIPSTELPEG 72 (146)
T ss_dssp CEEEEEECTTEECSTTEEEEGGGECSS-TC---------TTSEEEEEEEETTSSBTTSCTTTSEEEEEEEEEETSEE-TT
T ss_pred cCcCceeEcccccCCCCCCCcCcccccCCC---------CCcEEEEEEECCCCCccccCCCCcEEEEEEcCCCCccCCCC
Confidence 4699999 789999999998888 777777 2457999999999999888889999999999999
Q ss_pred --C---CCCC-CcceecccCCCCC--CCCceEEEEEEeeCCCCcCCCCCCCCCCCCCHHHHHHHhCCCCc-eEEeEEE
Q 030636 96 --E---GSDA-TKELVAYMGPQPP--TGIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPP-VAAVYFN 164 (174)
Q Consensus 96 --~---~~~~-~~~~~~Y~~P~P~--~G~HRY~fll~~q~~~~~~~~~~~~~R~~Fn~~~f~~~~~L~~p-va~~~f~ 164 (174)
. .... ...+++|.||+|+ +|.|||+|+||+|+..+.+. .....+++++.+++++|+.+ +|++||+
T Consensus 73 ~~~~~~~~~~~g~~~~~Y~~P~Pp~g~g~HrY~f~ly~q~~~~~l~----~~~~~~~~~~~~~~~~L~~~~l~~~y~r 146 (146)
T PF01161_consen 73 SDGARQGINSSGQVIAPYLGPCPPKGSGPHRYVFLLYAQPSPLPLS----DGATKFDLREAFKGHGLGPASLAGNYFR 146 (146)
T ss_dssp SSTCETSBGGTSEEEES--SB-SSTTSSCEEEEEEEEEESSSSTSG----BSSTHHTHHHHHHHTTEESEESEEEEEE
T ss_pred CCccEecccccCccccEEcCCcCcCcCCCceEEEEEEEcCCCCCCC----CCCCHHHHHHHHHcCCCCCceEEEEEEC
Confidence 1 0001 1347999999996 56999999999999966552 23456889999999999887 8999997
No 5
>cd00457 PEBP PhosphatidylEthanolamine-Binding Protein (PEBP) domain. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). A number of biological roles for members of the PEBP family include serine protease inhibition, membrane biogenesis, regulation of flowering plant stem architecture, and Raf-1 kinase inhibition. Although their overall structures are similar, the members of the PEBP family bind very different substrates including phospholipids, opioids, and hydrophobic odorant molecules as well as having different oligomerization states (monomer/dimer/tetramer).
Probab=99.92 E-value=9.3e-25 Score=165.71 Aligned_cols=124 Identities=33% Similarity=0.533 Sum_probs=98.6
Q ss_pred eeecC-CCccCC----CCCCCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCCCCC--------
Q 030636 34 KQVAN-GCEIKP----SASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDA-------- 100 (174)
Q Consensus 34 ~~v~~-G~~l~~----~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~-------- 100 (174)
..|.+ |+.|+. .....+|.|+|++.+.+ .+.|+|+|+|||+|.. ++|+||+++||+.+...
T Consensus 5 ~~~~~~g~~lp~~~~~~g~~~sP~l~w~~~p~~-t~s~ali~~DpDap~~-----~~~~HWvv~nIp~~~~~~~~~~~~~ 78 (159)
T cd00457 5 PEVGPSGSVLPPEYSFEGVGRFPSLSWDGPPPD-VKEYVLVMEDPDAPLG-----RPIVHGLVYGIPANKTSLSNDDFVV 78 (159)
T ss_pred CCcCCCCCccChhhccCCCCcCCceEecCCCCC-CeEEEEEEECCCCCCC-----CCceEEEEeccCccccccccccccc
Confidence 45666 888888 55567999999987644 4568999999999843 48999999999976521
Q ss_pred ------Cc----------ceecccCCCCCC--CCceEEEEEEeeCCCCcCCCCCCCCCCCCCHHHHHHHhCCCCceEEeE
Q 030636 101 ------TK----------ELVAYMGPQPPT--GIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGLQPPVAAVY 162 (174)
Q Consensus 101 ------~~----------~~~~Y~~P~P~~--G~HRY~fll~~q~~~~~~~~~~~~~R~~Fn~~~f~~~~~L~~pva~~~ 162 (174)
.. ....|.||+|+. |.|||+|+||+|+..+.... ....|..|++.+|++.+.|+ ++|.++
T Consensus 79 ~~~~~~~~~~~n~~g~~~~~~~Y~GP~PP~G~g~HrY~f~lyald~~~~~~~-~~~~~~~~~~~~~~~~~vL~-~~a~~~ 156 (159)
T cd00457 79 TDNGKGGLQGGFKYGKNRGGTVYIGPRPPLGHGPHRYFFQVYALDEPLDRSK-LGDGRTKFEVARFAEGNVLG-AVGEWV 156 (159)
T ss_pred CCCCccceeccccccccCCCcCCcCCCCCCCCCCeeEEEEEEEecCcccccc-ccCCCCHHHHHHHHHhCeee-EEEEEE
Confidence 00 245999999975 58999999999999887641 13578999999999999997 689998
Q ss_pred EEE
Q 030636 163 FNS 165 (174)
Q Consensus 163 f~~ 165 (174)
+++
T Consensus 157 ~~~ 159 (159)
T cd00457 157 GQF 159 (159)
T ss_pred EEC
Confidence 863
No 6
>PRK10257 putative kinase inhibitor protein; Provisional
Probab=99.83 E-value=8.8e-20 Score=137.98 Aligned_cols=108 Identities=22% Similarity=0.486 Sum_probs=82.0
Q ss_pred CeeecCCCccCCCCCC---------CCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCCCCCC--
Q 030636 33 TKQVANGCEIKPSASA---------DKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT-- 101 (174)
Q Consensus 33 ~~~v~~G~~l~~~~t~---------~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~~-- 101 (174)
+..+.+|..|+...+. .+|.|+|++.+.++. .|+|+|+|||+|.. ..|+||+++|||++....
T Consensus 5 S~~f~~g~~ip~~~~~~~~~~~G~n~SP~L~w~~~P~~t~-s~ali~~DpDap~~-----~~~~HWvv~nIP~~~~~l~e 78 (158)
T PRK10257 5 SNDLRDGDKLPHRHVFNGMGYDGDNISPHLAWDDVPAGTK-SFVVTCYDPDAPTG-----SGWWHWVVVNLPADTRVLPQ 78 (158)
T ss_pred ccCccCcCCCCHHHcccccCCCCCCCCceEEEcCCCCCce-EEEEEEECCCCCCC-----CcEEEEEEEcCCCCcccccC
Confidence 5667788888765442 599999998876555 57999999999874 279999999999753210
Q ss_pred -------------------cceecccCCCCCCC-CceEEEEEEeeC-CCCcCCCCCCCCCCCCCHHHHHHHhC
Q 030636 102 -------------------KELVAYMGPQPPTG-IHRYVFALFNQK-GKVMAGCRPPDARSNFSTRRFAADNG 153 (174)
Q Consensus 102 -------------------~~~~~Y~~P~P~~G-~HRY~fll~~q~-~~~~~~~~~~~~R~~Fn~~~f~~~~~ 153 (174)
.....|.||+|+.| .|||+|.||+++ ..+.+. .+++..++.++..
T Consensus 79 g~~~~~~~~p~g~~~g~n~~g~~gY~GP~PP~g~~HrY~f~vyALd~~~L~l~-------~~~~~~~l~~a~~ 144 (158)
T PRK10257 79 GFGSGLVALPDGVLQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVERIDVD-------EGASGAMVGFNVH 144 (158)
T ss_pred CCCcccccCCCCceeccccCCCccCcCCCCccCCCceEEEEEEEecCcccCCC-------CCCCHHHHHHHHh
Confidence 22568999999887 799999999999 467764 2445666666654
No 7
>PRK09818 putative kinase inhibitor; Provisional
Probab=99.80 E-value=4e-19 Score=137.22 Aligned_cols=111 Identities=27% Similarity=0.497 Sum_probs=82.3
Q ss_pred EEEEECCeeecCCCccCCCCC---------CCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCC
Q 030636 27 MTVHYGTKQVANGCEIKPSAS---------ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEG 97 (174)
Q Consensus 27 L~V~y~~~~v~~G~~l~~~~t---------~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~ 97 (174)
+.|+ +..+.+|..|+..++ ..+|.|+|++.+.++. .|+|+|.|||+|... .|+||+++|||++
T Consensus 22 ~~lt--S~~f~~G~~ip~~~~~~~~~~~G~n~SP~L~W~~~P~gtk-s~aLi~~DpDaP~g~-----~~~HWvv~nIP~~ 93 (183)
T PRK09818 22 FQVT--SNEIKTGEQLTTSHVFSGFGCEGGNTSPSLTWSGAPEGTK-SFAVTVYDPDAPTGS-----GWWHWTVANIPAT 93 (183)
T ss_pred EEEE--CcCccCcCCCCHHHcccccCCCCCCcceeEEEccCCCCcE-EEEEEEECCCCCCCC-----cEEEEEEEcCCCC
Confidence 5554 777889999986532 2699999998876555 579999999998752 6999999999875
Q ss_pred CCCC----------------------cceecccCCCCCCC--CceEEEEEEeeC-CCCcCCCCCCCCCCCCCHHHHHHHh
Q 030636 98 SDAT----------------------KELVAYMGPQPPTG--IHRYVFALFNQK-GKVMAGCRPPDARSNFSTRRFAADN 152 (174)
Q Consensus 98 ~~~~----------------------~~~~~Y~~P~P~~G--~HRY~fll~~q~-~~~~~~~~~~~~R~~Fn~~~f~~~~ 152 (174)
.... .....|.||||+.| +|||+|.||+++ ..+.+. .++...++.++.
T Consensus 94 ~~~l~eg~~~~~~~~~~~g~~~g~N~~g~~gY~GP~PP~G~g~HrY~F~vyALd~~~l~l~-------~~~~~~~l~~~~ 166 (183)
T PRK09818 94 VTYLPADAGRRDGTKLPTGAVQGRNDFGYAGFGGACPPKGDKPHHYQFKVWALKTDKIPVD-------SNSSGALVGYML 166 (183)
T ss_pred ccccCCCCcccccccCCCCCEEeecCCCCCceECCCCccCCCCEEEEEEEEEecCcccCCC-------CCCCHHHHHHHH
Confidence 3210 23468999999654 899999999999 456654 244555655554
No 8
>cd00865 PEBP_bact_arch PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea. PhosphatidylEthanolamine-Binding Proteins (PEBPs) are represented in all three major phylogenetic divisions (eukaryotes, bacteria, archaea). The members in this subgroup are present in bacterial and archaea. Members here include Escherichia coli YBHB and YBCL which are thought to regulate protein phosphorylation as well as Sulfolobus solfataricus SsCEI which inhibits serine proteases alpha-chymotrypsin and elastase. Although their overall structures are similar, the members of the PEBP family have very different substrates and oligomerization states (monomer/dimer/tetramer). In a few of the bacterial members present here the dimerization interface is proposed to form the ligand binding site, unlike in other PEBP members.
Probab=99.80 E-value=1.5e-18 Score=130.48 Aligned_cols=106 Identities=25% Similarity=0.462 Sum_probs=82.6
Q ss_pred ecCCCccCCCC--C----CCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCCCCCC--------
Q 030636 36 VANGCEIKPSA--S----ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT-------- 101 (174)
Q Consensus 36 v~~G~~l~~~~--t----~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~~-------- 101 (174)
+..|..++... + ..+|.|+|++.+.++ +.|+|+|+|+|+|.. .+|+||+++||+......
T Consensus 7 ~~~g~~~p~~~~~~~~g~~~SP~l~w~~~p~~t-~s~al~m~D~Dap~~-----~~~~HW~~~nIp~~~~~i~~g~~~~~ 80 (150)
T cd00865 7 FFDGGPIPKKYAFTCDGENVSPPLSWSGVPAGT-KSLALIVEDPDAPTG-----GGFVHWVVWNIPADTTELPEGASRGA 80 (150)
T ss_pred ccCcCCCChhhcccCCCCCcCCCeEEcCCCCCC-eEEEEEEEcCCCCCC-----CCEEEEEEeccCcccccccCCccccc
Confidence 34466666555 3 369999999887554 458999999999833 489999999999862110
Q ss_pred -----------cceecccCCCCCC-CCceEEEEEEeeCCCCcCCCCCCCCCCCCCHHHHHHHhCC
Q 030636 102 -----------KELVAYMGPQPPT-GIHRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAADNGL 154 (174)
Q Consensus 102 -----------~~~~~Y~~P~P~~-G~HRY~fll~~q~~~~~~~~~~~~~R~~Fn~~~f~~~~~L 154 (174)
.....|.||+|+. +.|||+|+||+++..+.+. .+++..++.++..-
T Consensus 81 ~~~~~~~g~n~~~~~~Y~gP~Pp~~~~HrY~f~vyAld~~l~~~-------~~~~~~~l~~ai~~ 138 (150)
T cd00865 81 LPAGAVQGRNDFGEAGYGGPCPPDGGPHRYVFTVYALDVPLLLP-------PGATRAELLFAMKG 138 (150)
T ss_pred CCCCCeEeecCCCCCeecCCCCcCCCceEEEEEEEEeCCccCCC-------CCCCHHHHHHHHhh
Confidence 3578999999986 8999999999999887652 57888888888764
No 9
>COG1881 Phospholipid-binding protein [General function prediction only]
Probab=99.78 E-value=1.9e-18 Score=132.39 Aligned_cols=108 Identities=26% Similarity=0.520 Sum_probs=82.4
Q ss_pred CCeeecCCCccCCCCC----CCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCCCCCC------
Q 030636 32 GTKQVANGCEIKPSAS----ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT------ 101 (174)
Q Consensus 32 ~~~~v~~G~~l~~~~t----~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~~------ 101 (174)
-+..+..|+.++...+ ..+|.++|++.+.++++ |+|+|.|||||.. ..|+||+++||+.+....
T Consensus 26 ~s~~f~~g~~ip~~~t~~g~~~sPpl~ws~~P~~tkS-~AL~v~DpDAP~g-----~~~~HWvv~nIp~~~~~~~~~~~~ 99 (174)
T COG1881 26 ISNAFADGAPIPDEYTCGGPNISPPLSWSGVPEGTKS-FALTVDDPDAPTG-----GGWVHWVVANIPADVTELPEGSGP 99 (174)
T ss_pred cchhhhCCCccchhhhcCCCCcCCceeecCCCCCCee-EEEEEECCCCCCC-----CcEEEEEEEccCCccccccccccc
Confidence 3678889999987765 36999999998876665 7999999999974 489999999999732210
Q ss_pred ------------cceecccCCCCCCCC-ceEEEEEEeeCCCCcCCCCCCCCCCCCCHHHHHHH
Q 030636 102 ------------KELVAYMGPQPPTGI-HRYVFALFNQKGKVMAGCRPPDARSNFSTRRFAAD 151 (174)
Q Consensus 102 ------------~~~~~Y~~P~P~~G~-HRY~fll~~q~~~~~~~~~~~~~R~~Fn~~~f~~~ 151 (174)
..-..|.|||||.|. |||.|.||+++-..... -.+|+..++.++
T Consensus 100 ~~~~~~~qg~Nd~g~~~Y~Gp~PP~g~~HrY~f~vyALd~~~~~~------~~g~~~~~~~~~ 156 (174)
T COG1881 100 KSKIGIVQGINDFGSRGYGGPCPPKGHGHRYYFTVYALDVELLLL------PAGASGAELGKA 156 (174)
T ss_pred ccccceEEeeccccccCcccCCCCCCCCeEEEEEEEEcccccccC------CCCCCHHHHHHH
Confidence 334569999998876 99999999999865432 145655555444
No 10
>TIGR00481 Raf kinase inhibitor-like protein, YbhB/YbcL family.
Probab=99.77 E-value=4.9e-18 Score=126.45 Aligned_cols=94 Identities=29% Similarity=0.596 Sum_probs=74.9
Q ss_pred CCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCCCCCC----------------------ccee
Q 030636 48 ADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEGSDAT----------------------KELV 105 (174)
Q Consensus 48 ~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~~~~~----------------------~~~~ 105 (174)
..+|.|+|++.+.++. .|+|+|+|+|+|... .|+||+++||+++.... ....
T Consensus 13 n~SP~l~w~~~P~~t~-s~al~~~D~Dap~~~-----~~~HWv~~nIp~~~~~l~e~~~~~~~~~~~g~~~~g~n~~g~~ 86 (141)
T TIGR00481 13 NISPPLSWDGVPEGAK-SLALTCIDPDAPTGC-----GWWHWVVVNIPADTTVLPENASSDDKRLPQGVPLQGRNDFGKS 86 (141)
T ss_pred CCCcEEEEcCCCCCce-EEEEEEECCCCCCCC-----CeEEEEEecCCCCcccccCCccccccccCCcceeEeeccCCCc
Confidence 3599999998765544 589999999998753 49999999999742210 2256
Q ss_pred cccCCCCCCCCceEEEEEEeeCCC-CcCCCCCCCCCCCCCHHHHHHHhCC
Q 030636 106 AYMGPQPPTGIHRYVFALFNQKGK-VMAGCRPPDARSNFSTRRFAADNGL 154 (174)
Q Consensus 106 ~Y~~P~P~~G~HRY~fll~~q~~~-~~~~~~~~~~R~~Fn~~~f~~~~~L 154 (174)
.|.||||+.|.|||+|.||+++.. +.+. .++...++.++..-
T Consensus 87 ~Y~GP~PP~g~HrY~f~vyALd~~~l~l~-------~~~~~~~l~~ai~g 129 (141)
T TIGR00481 87 GYIGPCPPKGDHRYLFTVYALDTEKLDLD-------PGFSLADLGDAMEG 129 (141)
T ss_pred cEeCCCCcCCCEEEEEEEEEecCCCCCCC-------CCCCHHHHHHHHhh
Confidence 999999998899999999999976 7663 37888888888764
No 11
>PRK04243 50S ribosomal protein L15e; Validated
Probab=37.83 E-value=45 Score=26.15 Aligned_cols=43 Identities=21% Similarity=0.465 Sum_probs=28.6
Q ss_pred CCCeEEEeCC----CCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeee
Q 030636 49 DKPSVQIHAP----PPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDI 94 (174)
Q Consensus 49 ~~P~i~~~~~----~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni 94 (174)
..|.+.+-+. ..+.-+.|-||||||..|.-.++ +-+.|+....
T Consensus 109 k~~nlrVLNSYwV~qDg~yK~fEVIlVDp~H~aIr~D---p~~nWI~~~~ 155 (196)
T PRK04243 109 KYPNLEVLNSYWVGEDGKYKWYEVILVDPHHPAIKND---PDLNWICDKS 155 (196)
T ss_pred cCCCcEeeeeeEeccCCCcccEEEEEecCCCcchhcC---cccceecccc
Confidence 4566664321 22445678999999999875443 6789988543
No 12
>KOG3586 consensus TBX1 and related T-box transcription factors [Transcription]
Probab=29.83 E-value=72 Score=27.80 Aligned_cols=53 Identities=28% Similarity=0.416 Sum_probs=30.2
Q ss_pred cCCCccCCCCC--CCCCeEEE--eCCCCCCCcceEEEEECCCCCCCCCCCCceeEE---EEEeee
Q 030636 37 ANGCEIKPSAS--ADKPSVQI--HAPPPASSNLYTLVMVDPDAPSPSEPRYREWLH---WIVVDI 94 (174)
Q Consensus 37 ~~G~~l~~~~t--~~~P~i~~--~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lH---wl~~ni 94 (174)
..|+++-.+.+ ...|+|++ .+.+. ...|.|+| |. -.-++-.|++..| ||+++-
T Consensus 95 ~lGTEMIITKsGRRMFPTvrV~~~GldP--~a~Y~vlm-Dv--VPvD~KRYRYayH~S~WlvAGk 154 (437)
T KOG3586|consen 95 DLGTEMIITKSGRRMFPTVRVKFSGLDP--MADYYVLM-DV--VPVDSKRYRYAYHSSSWLVAGK 154 (437)
T ss_pred hcCceEEEecccccccceEEEEEecCCc--ccceEEEE-eE--EecccceeeeeecccceeeecC
Confidence 35666544443 46899775 45443 55676655 33 1223345677666 888763
No 13
>PTZ00026 60S ribosomal protein L15; Provisional
Probab=26.84 E-value=66 Score=25.39 Aligned_cols=43 Identities=14% Similarity=0.366 Sum_probs=28.6
Q ss_pred CCCeEEEeCC----CCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeee
Q 030636 49 DKPSVQIHAP----PPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDI 94 (174)
Q Consensus 49 ~~P~i~~~~~----~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni 94 (174)
..|.+.+-+. ..+.-+.|-||||||..|.-.++ +-+.|+....
T Consensus 109 k~~nLrVLNSYWV~qDg~yK~yEVILvDp~H~aIr~D---p~~nWI~~~~ 155 (204)
T PTZ00026 109 RCGNLRVLNSYWVGQDSTYKFYEVILVDPFHNAIRND---PRINWICNPV 155 (204)
T ss_pred cCCCcEEecceeEcCCCCcccEEEEEecCCCccceeC---cccceecccc
Confidence 4566664321 22455688999999999875443 6788987643
No 14
>COG1632 RPL15A Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]
Probab=26.22 E-value=96 Score=24.25 Aligned_cols=44 Identities=18% Similarity=0.458 Sum_probs=29.3
Q ss_pred CCCeEEEeCC----CCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeC
Q 030636 49 DKPSVQIHAP----PPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIP 95 (174)
Q Consensus 49 ~~P~i~~~~~----~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~ 95 (174)
..|.+.+-+. +.+.-+.|=+|||||+-|.-.+. +-+.|+...+.
T Consensus 108 K~pNL~vLnSYwVgeDg~yK~fEvIlvDp~H~aIk~D---p~l~wI~~~~~ 155 (195)
T COG1632 108 KYPNLEVLNSYWVGEDGYYKYFEVILVDPRHPAIKND---PNLNWICRPVH 155 (195)
T ss_pred cCCCcEeeeeEEeccccceeeEEEEEecCCChhhcCC---Cceeeeccccc
Confidence 4677654322 22445688999999999875543 67889876443
No 15
>cd07927 RHD-n_NFAT_like N-terminal sub-domain of the Rel homology domain (RHD) of nuclear factor of activated T-cells (NFAT) proteins and similar proteins. Proteins containing the Rel homology domain (RHD) are metazoan transcription factors. The RHD is composed of two structural sub-domains; this model characterizes the N-terminal RHD sub-domain of the NFAT family of transcription factors. NFAT transcription complexes are a target of calcineurin, a calcium dependent phosphatase, and activate genes that are mainly involved in cell-cell interaction. Upon de-phosphorylation of the nuclear localization signal, NFAT enters the nucleus and acts as a transcription factor; its export from the nucleus is triggered by phosphorylation via export kinases. NFATs play important roles in mediating the immune response, and are found in T cells, B Cells, NK cells, mast cells, and monocytes. NFATs are also found in various non-hematopoietic cell types, where they play roles in development. This group al
Probab=21.39 E-value=3.7e+02 Score=20.41 Aligned_cols=66 Identities=15% Similarity=0.262 Sum_probs=41.8
Q ss_pred CCCeEEEEEECCeeecCCCccCCCCCCCCCeEEEeCCCCCCCcceEEEEECCCCCCCCCCCCceeEEEEEeeeCCC
Q 030636 22 TPATEMTVHYGTKQVANGCEIKPSASADKPSVQIHAPPPASSNLYTLVMVDPDAPSPSEPRYREWLHWIVVDIPEG 97 (174)
Q Consensus 22 ~P~~~L~V~y~~~~v~~G~~l~~~~t~~~P~i~~~~~~~~~~~~ytlvmvDpD~p~~~~~~~~~~lHwl~~ni~~~ 97 (174)
+|...++..|.... ..|.. +.......|+|.+.+... ... -.|.++--|.| +++.-||++.-+.+-
T Consensus 8 QPk~~~RfRY~cEG-s~Gsi-~~~~~kt~PtVkl~~y~g-pa~-v~V~lvT~d~p------~rpH~h~lvgr~~GK 73 (161)
T cd07927 8 QPEPHHRARYETEG-SRGAV-KAPSTGGFPTVKLHGYME-PVG-LQVFIGTASGR------LKPHAFYQVHRITGK 73 (161)
T ss_pred CCchhceEEeeccC-CCCCc-cCCCCCCCceEEEecccc-cEE-EEEEEEeCCCC------CCCCcceeecccccc
Confidence 46556888897654 56753 334457799999988762 222 24444444444 247899999877553
Done!