BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030640
         (174 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 31.6 bits (70), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 24/114 (21%), Positives = 45/114 (39%), Gaps = 20/114 (17%)

Query: 1   MEAVKVRVQTQ-----------PGFARGLADGLPKLVKSEGALGLYKGIVPLWGRQIPYT 49
           ++  KVR+Q Q               RG+   +  +V++EG   LY G+V    RQ+ + 
Sbjct: 22  LDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFA 81

Query: 50  MMKFASFETIVEMMYKHAIPKPKEQCSKSLQLGVSFAGGYVAGIFCALVSHPAD 103
            ++   ++++ +   K          S+   +G     G   G     V+ P D
Sbjct: 82  SVRIGLYDSVKQFYTKG---------SEHAGIGSRLLAGSTTGALAVAVAQPTD 126



 Score = 30.8 bits (68), Expect = 0.37,   Method: Compositional matrix adjust.
 Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 14/119 (11%)

Query: 2   EAVKVRVQTQPGFARG-----LADGLPKLVKSEGALGLYKGIVPLWGRQIPYTMMKFASF 56
           + VKVR Q Q     G       +    + + EG  GL+KG  P   R       +  ++
Sbjct: 126 DVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTY 185

Query: 57  ETIVEMMYKHAIPKPKEQCSKSLQLGVSFAGGYVAGIFCALVSHPADNL-VSFLNNSKG 114
           + I + + K  +      C         F   + AG    +++ P D +   ++N++ G
Sbjct: 186 DLIKDTLLKANLMTDDLPC--------HFTSAFGAGFCTTVIASPVDVVKTRYMNSALG 236


>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 29.6 bits (65), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 10/89 (11%)

Query: 17  GLADGLPKLVKSEGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMMYKHAIPKPKEQCS 76
           GL + + K+ KS+G  GLY+G        I Y    F  ++T   M+     P P     
Sbjct: 155 GLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGML-----PDP----- 204

Query: 77  KSLQLGVSFAGGYVAGIFCALVSHPADNL 105
           K++ + VS+           LVS+P D +
Sbjct: 205 KNVHIIVSWMIAQTVTAVAGLVSYPFDTV 233


>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
          Length = 490

 Score = 26.9 bits (58), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 36  KGIVPLWGRQIPYTM---MKFASFETIVEMMYKHAI 68
           K + P  GR+IPYT    + FA F ++    + HAI
Sbjct: 283 KAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAI 318


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.138    0.424 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,168,663
Number of Sequences: 62578
Number of extensions: 198109
Number of successful extensions: 360
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 355
Number of HSP's gapped (non-prelim): 7
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)