Query 030640
Match_columns 174
No_of_seqs 136 out of 1112
Neff 9.7
Searched_HMMs 29240
Date Tue Mar 26 18:22:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/030640.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2342-2346//hhsearch_pdb/030640hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 1.0 1 1 206.5 9.5 152 1-161 125-288 (303)
2 1okc_A ADP, ATP carrier protei 1.0 1 1 201.8 11.0 156 1-161 28-203 (297)
3 2lck_A Mitochondrial uncouplin 1.0 1 1 201.7 10.5 153 1-163 22-196 (303)
4 1okc_A ADP, ATP carrier protei 1.0 1 1 200.7 9.2 147 1-159 133-297 (297)
5 3tgu_G UQCRQ, mitochondrial ub 1.0 1 1 13.3 1.8 25 39-63 42-66 (81)
6 2acm_A Mucin-1; auto-catalytic 1.0 1 1 13.0 -0.7 22 109-130 38-59 (66)
7 1pp9_G Ubiquinol-cytochrome C 1.0 1 1 12.7 1.4 28 132-159 39-66 (81)
8 1e91_A Paired amphipathic heli 1.0 1 1 11.9 -3.8 16 4-19 17-32 (85)
9 3cx5_H Cytochrome B-C1 complex 1.0 1 1 11.8 2.6 36 123-159 41-76 (93)
10 1g1e_B SIN3A; four-helix bundl 1.0 1 1 11.8 -3.6 29 1-29 17-45 (89)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=206.47 Aligned_cols=152 Identities=20% Similarity=0.300 Sum_probs=96.9
Q ss_pred CCEEEEEHHCCCC-----CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 9332220311899-----99996648999998426012356603568766443467997999999999711599995224
Q 030640 1 MEAVKVRVQTQPG-----FARGLADGLPKLVKSEGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMMYKHAIPKPKEQC 75 (174)
Q Consensus 1 le~ik~rlq~~~~-----~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~ 75 (174)
+|++|+|+|++.. .|++.++++++|+++||+++||+|+.+++++.+|..+++|.+||.+|+.+.+..
T Consensus 125 ld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~-------- 196 (303)
T 2lck_A 125 TDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN-------- 196 (303)
T ss_dssp HHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT--------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC--------
T ss_conf 999999996266657777788799999999984284450177638999999999899999999999997546--------
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC-------CHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 666312678776777767575403539999998832786-------0699999940811000258404789998644679
Q 030640 76 SKSLQLGVSFAGGYVAGIFCALVSHPADNLVSFLNNSKG-------ASVGDAVKKLGMWGLFTRGLPLRIVMIGTLTGAQ 148 (174)
Q Consensus 76 ~~~~~~~~~~~~g~~ag~~~~~~~~P~d~ik~r~q~~~~-------~~~~~i~~~~G~~gly~rG~~~~~~~~~~~~~~~ 148 (174)
....+....+++|++||++++++++|+|+||+|+|.+.. +|+++|+++||++||| ||+.++++|.+|.++++
T Consensus 197 ~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~gly-rG~~~~~~r~~p~~~i~ 275 (303)
T 2lck_A 197 LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFY-KGFMPSFLRLGSWNVVM 275 (303)
T ss_dssp SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHH-SCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHHHH-CCHHHHHHHHHHHHHHH
T ss_conf 88876599999999999999987399999999998645666687999999999970857866-66999999998678889
Q ss_pred HHHHHHHHHHHCC
Q ss_conf 9989999986489
Q 030640 149 WGLYDASKVFFGL 161 (174)
Q Consensus 149 ~~~y~~~~~~~~~ 161 (174)
|.+||.+|+.+..
T Consensus 276 f~~ye~~k~~l~~ 288 (303)
T 2lck_A 276 FVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999987
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=1.00 E-value=1 Score=201.79 Aligned_cols=156 Identities=22% Similarity=0.282 Sum_probs=134.3
Q ss_pred CCEEEEEHHCCCC--------CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 9332220311899--------99996648999998426012356603568766443467997999999999711599995
Q 030640 1 MEAVKVRVQTQPG--------FARGLADGLPKLVKSEGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMMYKHAIPKPK 72 (174)
Q Consensus 1 le~ik~rlq~~~~--------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~ 72 (174)
+|++|+|+|++.. .|++.++++++|+++||+++||+|+.+++++.++..+++|.+||.+|+.+.....
T Consensus 28 ld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~---- 103 (297)
T 1okc_A 28 IERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVD---- 103 (297)
T ss_dssp HHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC----
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCHHHEECCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC----
T ss_conf 9999999970655455566656344999999998614612032666799999977889999999999999611457----
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC------------CCHHHHHHHHCCCCCCCCCCCHHHHHH
Q ss_conf 22466631267877677776757540353999999883278------------606999999408110002584047899
Q 030640 73 EQCSKSLQLGVSFAGGYVAGIFCALVSHPADNLVSFLNNSK------------GASVGDAVKKLGMWGLFTRGLPLRIVM 140 (174)
Q Consensus 73 ~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~ik~r~q~~~------------~~~~~~i~~~~G~~gly~rG~~~~~~~ 140 (174)
.+..........+++|+++|+++.++++|+|+||+|+|.+. .+++++|+++||+++|| ||+.+++++
T Consensus 104 ~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~gly-rG~~~~l~~ 182 (297)
T 1okc_A 104 RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLY-QGFNVSVQG 182 (297)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHT-TTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHC-CCCHHHHHH
T ss_conf 6530378999999999999999999909499999998301357886757898999999999841388840-786188887
Q ss_pred HHHHHHHHHHHHHHHHHHHCC
Q ss_conf 986446799989999986489
Q 030640 141 IGTLTGAQWGLYDASKVFFGL 161 (174)
Q Consensus 141 ~~~~~~~~~~~y~~~~~~~~~ 161 (174)
.+|.++++|.+||.+|+.+..
T Consensus 183 ~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 183 IIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHHHHHHHHHHHHHHHHSSCG
T ss_pred HHHHHHHHHHHHHHHHHHHCC
T ss_conf 999999999999999998546
No 3
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=201.73 Aligned_cols=153 Identities=20% Similarity=0.355 Sum_probs=137.4
Q ss_pred CCEEEEEHHCCCC-----------CCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9332220311899-----------99996648999998426012356603568766443467997999999999711599
Q 030640 1 MEAVKVRVQTQPG-----------FARGLADGLPKLVKSEGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMMYKHAIP 69 (174)
Q Consensus 1 le~ik~rlq~~~~-----------~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~ 69 (174)
||++|+|+|++.. .|++.++++++|+++||+++||+|+.+++++.++..+++|.+||.+|+.+.+.
T Consensus 22 ld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~--- 98 (303)
T 2lck_A 22 LDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG--- 98 (303)
T ss_dssp HHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCC---
T ss_conf 99999999962002454323567778889999999998628899986878999999999889998899999998537---
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCC-----------CHHHHHHHHCCCCCCCCCCCHHHH
Q ss_conf 995224666312678776777767575403539999998832786-----------069999994081100025840478
Q 030640 70 KPKEQCSKSLQLGVSFAGGYVAGIFCALVSHPADNLVSFLNNSKG-----------ASVGDAVKKLGMWGLFTRGLPLRI 138 (174)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~ik~r~q~~~~-----------~~~~~i~~~~G~~gly~rG~~~~~ 138 (174)
. ...+....+++|+++|+++.++++|+|+||+|+|.+.. +++++|+++||+++|| ||+.+++
T Consensus 99 --~----~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~gly-rG~~~~l 171 (303)
T 2lck_A 99 --S----EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLW-KGTSPNV 171 (303)
T ss_dssp --C----SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHH-HHHHHHH
T ss_pred --C----CCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHH-CCCCHHH
T ss_conf --7----67767999999999999999992909999999962666577777887999999999842844501-7763899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 9998644679998999998648999
Q 030640 139 VMIGTLTGAQWGLYDASKVFFGLPT 163 (174)
Q Consensus 139 ~~~~~~~~~~~~~y~~~~~~~~~~~ 163 (174)
++.+|..+++|.+||.+|+.+....
T Consensus 172 ~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 172 ARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 9999999899999999999997546
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=1.00 E-value=1 Score=200.66 Aligned_cols=147 Identities=22% Similarity=0.246 Sum_probs=129.7
Q ss_pred CCEEEEEHHCCC------CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
Q ss_conf 933222031189------99999664899999842601235660356876644346799799999999971159999522
Q 030640 1 MEAVKVRVQTQP------GFARGLADGLPKLVKSEGALGLYKGIVPLWGRQIPYTMMKFASFETIVEMMYKHAIPKPKEQ 74 (174)
Q Consensus 1 le~ik~rlq~~~------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~ 74 (174)
+|++|+|+|++. ..|++.++++++|+++||+++||+|+.+++++.+|..+++|.+||.+|+.+.+.
T Consensus 133 ld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-------- 204 (297)
T 1okc_A 133 LDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-------- 204 (297)
T ss_dssp HHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG--------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC--------
T ss_conf 999999983013578867578989999999998413888407861888879999999999999999985467--------
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC------------CCHHHHHHHHCCCCCCCCCCCHHHHHHHH
Q ss_conf 466631267877677776757540353999999883278------------60699999940811000258404789998
Q 030640 75 CSKSLQLGVSFAGGYVAGIFCALVSHPADNLVSFLNNSK------------GASVGDAVKKLGMWGLFTRGLPLRIVMIG 142 (174)
Q Consensus 75 ~~~~~~~~~~~~~g~~ag~~~~~~~~P~d~ik~r~q~~~------------~~~~~~i~~~~G~~gly~rG~~~~~~~~~ 142 (174)
...+....+++|.++|++++++++|+|+||+|+|.+. .+|+++|+++||++||| ||+.++++|.
T Consensus 205 --~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~gly-rG~~~~~~r~- 280 (297)
T 1okc_A 205 --KNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFF-KGAWSNVLRG- 280 (297)
T ss_dssp --GCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGG-TTHHHHHHHH-
T ss_pred --CCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEE-CCHHHHHHHH-
T ss_conf --775389999999999999999659199999999416777887777788999999999972957574-5657898731-
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 64467999899999864
Q 030640 143 TLTGAQWGLYDASKVFF 159 (174)
Q Consensus 143 ~~~~~~~~~y~~~~~~~ 159 (174)
+.++++|.+||.+|+++
T Consensus 281 ~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 281 MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp HHHHHHHHHHHTC----
T ss_pred CCCEEEEHHHHHHHHHC
T ss_conf 32304641799897439
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=1.00 E-value=1 Score=13.34 Aligned_cols=25 Identities=4% Similarity=-0.104 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3568766443467997999999999
Q 030640 39 VPLWGRQIPYTMMKFASFETIVEMM 63 (174)
Q Consensus 39 ~~~~~~~~~~~~~~~~~~~~~k~~~ 63 (174)
...++..+|--++.+.+|++.++.-
T Consensus 42 ~~q~l~v~pPfi~~Y~i~~Wa~~~n 66 (81)
T 3tgu_G 42 SSQVFKVAPPFLGAYLLYSWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8751675578999999999999999
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=13.04 Aligned_cols=22 Identities=23% Similarity=0.194 Sum_probs=13.0
Q ss_pred HHCCCCCHHHHHHHHCCCCCCC
Q ss_conf 8327860699999940811000
Q 030640 109 LNNSKGASVGDAVKKLGMWGLF 130 (174)
Q Consensus 109 ~q~~~~~~~~~i~~~~G~~gly 130 (174)
+|.+-.+.+.+||+++++.|++
T Consensus 38 Lqr~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 38 LQRDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEE
T ss_conf 9988999999998158831366
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=1.00 E-value=1 Score=12.65 Aligned_cols=28 Identities=18% Similarity=0.070 Sum_probs=11.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 5840478999864467999899999864
Q 030640 132 RGLPLRIVMIGTLTGAQWGLYDASKVFF 159 (174)
Q Consensus 132 rG~~~~~~~~~~~~~~~~~~y~~~~~~~ 159 (174)
|-+...++..+|..++.+.+|++.++..
T Consensus 39 RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~ 66 (81)
T 1pp9_G 39 RRTRACILRVAPPFVAFYLVYTWGTQEF 66 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCEEEEHHHHHHHHHHHHHHHHH
T ss_conf 9988502366216879999999989999
No 8
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=1.00 E-value=1 Score=11.89 Aligned_cols=16 Identities=25% Similarity=0.463 Sum_probs=5.6
Q ss_pred EEEEHHCCCCCCCCHH
Q ss_conf 2220311899999966
Q 030640 4 VKVRVQTQPGFARGLA 19 (174)
Q Consensus 4 ik~rlq~~~~~~~~~~ 19 (174)
||.|.|.++..|..+.
T Consensus 17 VK~rF~~~p~~Y~~FL 32 (85)
T 1e91_A 17 IKTRFLDHPEIYRSFL 32 (85)
T ss_dssp HHHHTSSCHHHHHHHH
T ss_pred HHHHHHCCHHHHHHHH
T ss_conf 9999804969999999
No 9
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=1.00 E-value=1 Score=11.84 Aligned_cols=36 Identities=11% Similarity=0.291 Sum_probs=0.0
Q ss_pred HCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 4081100025840478999864467999899999864
Q 030640 123 KLGMWGLFTRGLPLRIVMIGTLTGAQWGLYDASKVFF 159 (174)
Q Consensus 123 ~~G~~gly~rG~~~~~~~~~~~~~~~~~~y~~~~~~~ 159 (174)
+.|+...+ |-+...++..+|..++.+.+|++.++..
T Consensus 41 ~~~i~N~~-RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~ 76 (93)
T 3cx5_H 41 HNAVFNSF-RRFKSQFLYVLIPAGIYWYWWKNGNEYN 76 (93)
T ss_dssp TTTSSSCS-HHHHTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCHHHH-HHHHHCCEEEECHHHHHHHHHHHHHHHH
T ss_conf 65104889-9987424477524868899999888999
No 10
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=1.00 E-value=1 Score=11.81 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=0.0
Q ss_pred CCEEEEEHHCCCCCCCCHHHHHHHHHHHH
Q ss_conf 93322203118999999664899999842
Q 030640 1 MEAVKVRVQTQPGFARGLADGLPKLVKSE 29 (174)
Q Consensus 1 le~ik~rlq~~~~~~~~~~~~~~~i~~~~ 29 (174)
+..||.|.|.++..|+.+...++..-++.
T Consensus 17 vnkVK~rF~~~p~~Y~~FL~IL~~y~~~~ 45 (89)
T 1g1e_B 17 VNKIKNRFQGQPDIYKAFLEILHTYQKEQ 45 (89)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_conf 99999998559399999999999998656
Done!