BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030641
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1RRP|B Chain B, Structure Of The Ran-Gppnhp-Ranbd1 Complex
pdb|1RRP|D Chain D, Structure Of The Ran-Gppnhp-Ranbd1 Complex
Length = 134
Score = 130 bits (326), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 61/121 (50%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 28 PIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLV 86
P+V L +++ V TGEEDE+ +AKL+RFD + +WKERG G VK+L+HK +GK+RL+
Sbjct: 4 PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLL 63
Query: 87 MRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYF 146
MR+ + LKICANH + P M + +AG+D+S VWHA DYAD K E IRF + E
Sbjct: 64 MRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAAL 123
Query: 147 F 147
F
Sbjct: 124 F 124
>pdb|4GPT|B Chain B, Crystal Structure Of Kpt251 In Complex With
Crm1-ran-ranbp1
Length = 140
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 85/117 (72%), Gaps = 1/117 (0%)
Query: 28 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
P+V LE+V V T EEDE+ + ++AKL+RFDKD +WKERG G K LK+K T KVR++M
Sbjct: 6 PVVHLEKVDVKTAEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILM 65
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVES 143
R+ KTLKICANH++ P +++ + G+D+S V+ AD A+GE + F IRFGS E+
Sbjct: 66 RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKEN 122
>pdb|1K5D|B Chain B, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|E Chain E, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|H Chain H, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5D|K Chain K, Crystal Structure Of Ran-Gppnhp-Ranbp1-Rangap Complex
pdb|1K5G|B Chain B, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|E Chain E, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|H Chain H, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
pdb|1K5G|K Chain K, Crystal Structure Of Ran-Gdp-Alfx-Ranbp1-Rangap Complex
Length = 201
Score = 127 bits (320), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 86/127 (67%), Gaps = 3/127 (2%)
Query: 24 AQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKHKVTG 81
Q PIV L E + T EEDE+ + ++AKL+RF + D +WKERG G VKLLKHK G
Sbjct: 25 PQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKG 84
Query: 82 KVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGS 140
+RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+ AD+AD K EL IRF +
Sbjct: 85 AIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLN 144
Query: 141 VESEYFF 147
E+ F
Sbjct: 145 AENAQKF 151
>pdb|4HAT|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1- Ran-ranbp1
pdb|4HAU|B Chain B, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1- Ran-ranbp1
pdb|4HAV|B Chain B, Crystal Structure Of Crm1 Inhibitor Anguinomycin A In
Complex With Crm1-ran-ranbp1
pdb|4HAW|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548a)-ran-ranbp1
pdb|4HAX|B Chain B, Crystal Structure Of Crm1 Inhibitor Ratjadone A In Complex
With Crm1(k579a)-ran-ranbp1
pdb|4HAY|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(k548e,k579q)-ran-ranbp1
pdb|4HAZ|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(r543s,k548e,k579q)-ran-ranbp1
pdb|4HB0|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With
Crm1(k541q,k542q,r543s,k545q,k548q,k579q)-ran-ranbp1
pdb|4HB2|B Chain B, Crystal Structure Of Crm1-ran-ranbp1
pdb|4HB3|B Chain B, Crystal Structure Of Crm1(t539s)-ran-ranbp1 Soaked In
Excess Crm1 Inhibitor Leptomycin B
pdb|4HB4|B Chain B, Crystal Structure Of Crm1 Inhibitor Leptomycin B In
Complex With Crm1(537dltvk541/glceq)-ran-ranbp1
Length = 140
Score = 126 bits (317), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 61/117 (52%), Positives = 85/117 (72%), Gaps = 1/117 (0%)
Query: 28 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
P+V LE+V V T EEDE+ + ++AKL+RFDKD +WKERG G K LK+K T KVR++M
Sbjct: 6 PVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILM 65
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVES 143
R+ KTLKICANH++ P +++ + G+D+S V+ AD A+GE + F IRFGS E+
Sbjct: 66 RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKEN 122
>pdb|3M1I|B Chain B, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 191
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 92/141 (65%), Gaps = 3/141 (2%)
Query: 6 EGDHREEEVPHNED--EDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQ 63
E D +EE +D E P+V LE+V V T EEDE+ + ++AKL+RFD D +
Sbjct: 33 EEDTKEETKKEGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKE 92
Query: 64 WKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AA 122
WKERG G K LK+K T KVR++MR+ KTLKICANH++ P +++ + G+D+S V+ A
Sbjct: 93 WKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTA 152
Query: 123 DYADGELKDELFCIRFGSVES 143
D A+GE + F IRFGS E+
Sbjct: 153 DIAEGEAEAFTFAIRFGSKEN 173
>pdb|4GMX|B Chain B, Crystal Structure Of Kpt185 In Complex With
Crm1-Ran-Ranbp1
Length = 141
Score = 124 bits (311), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 60/117 (51%), Positives = 84/117 (71%), Gaps = 1/117 (0%)
Query: 28 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
P+V LE+V V T EEDE+ + ++AKL+RFD D +WKERG G K LK+K T KVR++M
Sbjct: 7 PVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILM 66
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVES 143
R+ KTLKICANH++ P +++ + G+D+S V+ AD A+GE + F IRFGS E+
Sbjct: 67 RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKEN 123
>pdb|1XKE|A Chain A, Solution Structure Of The Second Ran-Binding Domain From
Human Ranbp2
Length = 130
Score = 105 bits (261), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 44/104 (42%), Positives = 75/104 (72%)
Query: 39 TGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 98
+GEEDE + + KL+RFD + +QWKERG G +K+LK++V GK+R++MR+ + LK+CAN
Sbjct: 2 SGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCAN 61
Query: 99 HLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVE 142
H + M+++ +G+D++ +W A+D++DG+ K E +F + E
Sbjct: 62 HWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPE 105
>pdb|2CRF|A Chain A, Solution Structure Of The Ran_bp1 Domain Of Ran-Binding
Protein-3
Length = 150
Score = 54.3 bits (129), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 14 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 73
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFF 147
R +L++ N + M + + ++KS A D D +K +F I S ++ +
Sbjct: 74 RTQGSLRLILNTKLWAQMQIDK--ASEKSIHITAMDTEDQGVK--VFLISASSKDTGQLY 129
Query: 148 SFI 150
+ +
Sbjct: 130 AAL 132
>pdb|2Y8F|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|B Chain B, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|C Chain C, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
pdb|2Y8F|D Chain D, Structure Of The Ran-Binding Domain From Human Ranbp3
(Wild Type)
Length = 138
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/121 (30%), Positives = 60/121 (49%), Gaps = 8/121 (6%)
Query: 34 EVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVMRQ 89
+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVMR
Sbjct: 4 KVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRT 63
Query: 90 SKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSF 149
+L++ N + M + + ++KS A D D +K +F I S ++ ++
Sbjct: 64 QGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK--VFLISASSKDTGQLYAA 119
Query: 150 I 150
+
Sbjct: 120 L 120
>pdb|2Y8G|A Chain A, Structure Of The Ran-Binding Domain From Human Ranbp3
(E352a-R353v Double Mutant)
pdb|2Y8G|B Chain B, Structure Of The Ran-Binding Domain From Human Ranbp3
(E352a-R353v Double Mutant)
Length = 138
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 8/121 (6%)
Query: 34 EVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVMRQ 89
+V V TGEE E +L ++ KL+ FDK W G G ++L T + RLVMR
Sbjct: 4 KVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRT 63
Query: 90 SKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSF 149
+L++ N + M + + ++KS A D D +K +F I S ++ ++
Sbjct: 64 QGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK--VFLISASSKDTGQLYAA 119
Query: 150 I 150
+
Sbjct: 120 L 120
>pdb|3OAN|A Chain A, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
Length = 130
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 36 AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK-VTGKVRLVMRQSKTLK 94
++T GEE+E+ + KAKL FD D + RG G +KLL+ K GKVR++ R
Sbjct: 2 SLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLXRSEGXGH 61
Query: 95 ICANHLVLPMMSVQE-HAGNDKSCVWHAADYADGELKDELFCIR 137
+ N V+ Q A N+ W DG+L E F I+
Sbjct: 62 VLLNTSVVKSFKYQPIDADNENLIKWPI--ITDGKL--ETFIIK 101
>pdb|3N7C|A Chain A, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
pdb|3N7C|B Chain B, Crystal Structure Of The Ran Binding Domain From The
Nuclear Complex Component Nup2 From Ashbya Gossypii
Length = 130
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 51/104 (49%), Gaps = 6/104 (5%)
Query: 36 AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK-VTGKVRLVMRQSKTLK 94
++T GEE+E+ + KAKL FD D + RG G +KLL+ K GKVR++ R
Sbjct: 2 SLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGXGH 61
Query: 95 ICANHLVLPMMSVQE-HAGNDKSCVWHAADYADGELKDELFCIR 137
+ N V+ Q A N+ W DG+L E F I+
Sbjct: 62 VLLNTSVVKSFKYQPIDADNENLIKWPI--ITDGKL--ETFIIK 101
>pdb|2EC1|A Chain A, Solution Structure Of The Ranbd1 Domain From Human
Nucleoporin 50 Kda
Length = 125
Score = 35.4 bits (80), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 43/79 (54%), Gaps = 5/79 (6%)
Query: 38 TTGE-EDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTL-KI 95
++GE ++EDA K KL+ + KD N++KE+G GT+ LK K +L++R L I
Sbjct: 5 SSGEVKEEDAFYSKKCKLF-YKKD-NEFKEKGIGTLH-LKPTANQKTQLLVRADTNLGNI 61
Query: 96 CANHLVLPMMSVQEHAGND 114
N L+ P M N+
Sbjct: 62 LLNVLIPPNMPCTRTGKNN 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,322,431
Number of Sequences: 62578
Number of extensions: 209777
Number of successful extensions: 552
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 532
Number of HSP's gapped (non-prelim): 21
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)