BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030641
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P92985|RBP1C_ARATH Ran-binding protein 1 homolog c OS=Arabidopsis thaliana GN=RANBP1C
PE=2 SV=1
Length = 219
Score = 246 bits (628), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 117/148 (79%), Positives = 133/148 (89%), Gaps = 1/148 (0%)
Query: 1 MAST-TEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDK 59
MAST E ++RE+E NEDEDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+K+YRFDK
Sbjct: 1 MASTEPERENREDETEVNEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDK 60
Query: 60 DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119
+GNQWKERGAGTVKLLKHK TGKVRLVMRQSKTLKICANHL+ MSVQEH+GN+KSC+W
Sbjct: 61 EGNQWKERGAGTVKLLKHKETGKVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLW 120
Query: 120 HAADYADGELKDELFCIRFGSVESEYFF 147
HA D++DGELKDELFCIRF S+E+ F
Sbjct: 121 HATDFSDGELKDELFCIRFASIENCKTF 148
>sp|Q8RWG8|RBP1B_ARATH Ran-binding protein 1 homolog b OS=Arabidopsis thaliana GN=RANBP1B
PE=1 SV=2
Length = 217
Score = 243 bits (621), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 119/151 (78%), Positives = 129/151 (85%), Gaps = 4/151 (2%)
Query: 1 MASTTEGDHRE----EEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYR 56
MAS + RE EE NEDEDTGAQVAPIV+LEEVAVTTGEEDED ILDLK+KLYR
Sbjct: 1 MASISNEPERENRDEEETGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYR 60
Query: 57 FDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKS 116
FDKDG+QWKERGAGTVK LKH+V+GK+RLVMRQSKTLKICANHLV MSVQEHAGNDKS
Sbjct: 61 FDKDGSQWKERGAGTVKFLKHRVSGKIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKS 120
Query: 117 CVWHAADYADGELKDELFCIRFGSVESEYFF 147
CVWHA D++DGELKDELFCIRF SVE+ F
Sbjct: 121 CVWHARDFSDGELKDELFCIRFASVENCKAF 151
>sp|Q9LMK7|RBP1A_ARATH Ran-binding protein 1 homolog a OS=Arabidopsis thaliana GN=RANBP1A
PE=1 SV=1
Length = 228
Score = 239 bits (611), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 115/139 (82%), Positives = 124/139 (89%), Gaps = 1/139 (0%)
Query: 6 EGDHR-EEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQW 64
E +HR EEE NEDEDTGAQVAPIV+LEEVAVTTGEEDEDA+LDLK+KLYRFDKD NQW
Sbjct: 7 EHEHRDEEEAGANEDEDTGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQW 66
Query: 65 KERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADY 124
KERGAGTVK LKHK TGK+RLVMRQSKTLKICANH V MSVQEH GN+KSCVWHA D+
Sbjct: 67 KERGAGTVKFLKHKNTGKIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDF 126
Query: 125 ADGELKDELFCIRFGSVES 143
ADGELKDELFCIRF S+E+
Sbjct: 127 ADGELKDELFCIRFASIEN 145
>sp|Q9ERU9|RBP2_MOUSE E3 SUMO-protein ligase RanBP2 OS=Mus musculus GN=Ranbp2 PE=1 SV=2
Length = 3053
Score = 139 bits (351), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 65/133 (48%), Positives = 89/133 (66%), Gaps = 1/133 (0%)
Query: 16 HNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKL 74
H ++ED G P+V L +++ V TGEEDE+ +AKL+RFD + +WKERG G VK+
Sbjct: 1156 HGDEEDDGPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDGESKEWKERGIGNVKI 1215
Query: 75 LKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELF 134
L+HK +GK+RL+MR+ + LKICANH + P M + +AG+D+S VWHA DYAD K E
Sbjct: 1216 LRHKTSGKIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQL 1275
Query: 135 CIRFGSVESEYFF 147
IRF + E F
Sbjct: 1276 AIRFKTPEEAALF 1288
Score = 119 bits (299), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 8 DHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKER 67
D +E+V HNED PIV L EV V +GEEDE+ + +AKLYR+D+D +QWKER
Sbjct: 2727 DGSDEDVVHNED----IHFEPIVSLPEVEVKSGEEDEEVLFKERAKLYRWDRDVSQWKER 2782
Query: 68 GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADG 127
G G +K+L H + R++MR+ + K+CANH++ M ++ ++ + VW A+DYADG
Sbjct: 2783 GIGDIKILWHTMKKYYRILMRRDQVFKVCANHVITKAMELKPLNVSNNALVWTASDYADG 2842
Query: 128 ELKDELFCIRFGSVE 142
E K E +RF + E
Sbjct: 2843 EAKVEQLAVRFKTKE 2857
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 59/133 (44%), Positives = 85/133 (63%), Gaps = 2/133 (1%)
Query: 7 GDHREEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWK 65
G E +V E+ D G P+V L + V V++GEE+E + +AKLYR+DKD QWK
Sbjct: 2129 GTDEESDVTQEEERD-GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWK 2187
Query: 66 ERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYA 125
ERG G +K+L++ +VR+VMR+ + LK+CANH + P M++Q G ++ VW A D+A
Sbjct: 2188 ERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQTMKGTERVWVWTACDFA 2247
Query: 126 DGELKDELFCIRF 138
DGE K E +RF
Sbjct: 2248 DGERKIEHLAVRF 2260
Score = 112 bits (281), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 95/142 (66%), Gaps = 2/142 (1%)
Query: 2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKD 60
A+T+ ++++ ED D P+V++ E+V + TGEEDE + + KL+RFD +
Sbjct: 1827 ANTSSDLEKDDDAYKTEDSDD-IHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAE 1885
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
+QWKERG G +K+LK++V GK+R++MR+ + LK+CANH + M+++ +G+D++ +W
Sbjct: 1886 ISQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWL 1945
Query: 121 AADYADGELKDELFCIRFGSVE 142
A+D++DG+ K E +F + E
Sbjct: 1946 ASDFSDGDAKLEQLAAKFKTPE 1967
>sp|P49792|RBP2_HUMAN E3 SUMO-protein ligase RanBP2 OS=Homo sapiens GN=RANBP2 PE=1 SV=2
Length = 3224
Score = 130 bits (328), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 64/137 (46%), Positives = 88/137 (64%), Gaps = 5/137 (3%)
Query: 28 PIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLV 86
P+V L +++ V TGEEDE+ +AKL+RFD + +WKERG G VK+L+HK +GK+RL+
Sbjct: 1174 PVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLL 1233
Query: 87 MRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYF 146
MR+ + LKICANH + P M + +AG+D+S VWHA DYAD K E IRF + E
Sbjct: 1234 MRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAAL 1293
Query: 147 FSFIDSSKLNHVTSVLR 163
F K S+L+
Sbjct: 1294 F----KCKFEEAQSILK 1306
Score = 121 bits (304), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 60/135 (44%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 8 DHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKER 67
D +EEV HNED PIV L EV V +GEEDE+ + +AKLYR+D+D +QWKER
Sbjct: 2898 DGSDEEVVHNED----IHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKER 2953
Query: 68 GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADG 127
G G +K+L H + R++MR+ + K+CANH++ M ++ ++ + VW A+DYADG
Sbjct: 2954 GVGDIKILWHTMKNYYRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADG 3013
Query: 128 ELKDELFCIRFGSVE 142
E K E +RF + E
Sbjct: 3014 EAKVEQLAVRFKTKE 3028
Score = 119 bits (299), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 88/139 (63%), Gaps = 2/139 (1%)
Query: 1 MASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDK 59
+ T+ G E +V E+ D G P+V L + V V++GEE+E + +AKLYR+DK
Sbjct: 2286 QSGTSVGTDEESDVTQEEERD-GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDK 2344
Query: 60 DGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVW 119
D QWKERG G +K+L++ +VR+VMR+ + LK+CANH + P M++Q G ++ +W
Sbjct: 2345 DVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLW 2404
Query: 120 HAADYADGELKDELFCIRF 138
A D+ADGE K E +RF
Sbjct: 2405 TACDFADGERKVEHLAVRF 2423
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 52/141 (36%), Positives = 94/141 (66%), Gaps = 1/141 (0%)
Query: 3 STTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 61
+ T GD +++ + ++ P+V++ E+V + TGEEDE + + KL+RFD +
Sbjct: 1990 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEV 2049
Query: 62 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121
+QWKERG G +K+LK++V GK+R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 2050 SQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLA 2109
Query: 122 ADYADGELKDELFCIRFGSVE 142
+D++DG+ K E +F + E
Sbjct: 2110 SDFSDGDAKLEQLAAKFKTPE 2130
>sp|Q3T0M7|RANG_BOVIN Ran-specific GTPase-activating protein OS=Bos taurus GN=RANBP1 PE=2
SV=1
Length = 206
Score = 128 bits (321), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 89/135 (65%), Gaps = 4/135 (2%)
Query: 17 NEDEDT-GAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVK 73
N DE Q PIV L E + T EEDE+ + ++AKL+RF + D +WKERG G VK
Sbjct: 17 NADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVK 76
Query: 74 LLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDE 132
LLKHK G +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+ AD+AD K E
Sbjct: 77 LLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKQE 136
Query: 133 LFCIRFGSVESEYFF 147
L IRF + E+ F
Sbjct: 137 LLAIRFLNAENAQKF 151
>sp|P34022|RANG_MOUSE Ran-specific GTPase-activating protein OS=Mus musculus GN=Ranbp1
PE=1 SV=2
Length = 203
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 67/135 (49%), Positives = 89/135 (65%), Gaps = 4/135 (2%)
Query: 17 NEDEDT-GAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVK 73
N DE Q PIV L E + T EEDE+ + ++AKL+RF + D +WKERG G VK
Sbjct: 17 NADESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVK 76
Query: 74 LLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDE 132
LLKHK G +RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+ AD+AD K E
Sbjct: 77 LLKHKEKGTIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPE 136
Query: 133 LFCIRFGSVESEYFF 147
L IRF + E+ F
Sbjct: 137 LLAIRFLNAENAQKF 151
>sp|P43487|RANG_HUMAN Ran-specific GTPase-activating protein OS=Homo sapiens GN=RANBP1
PE=1 SV=1
Length = 201
Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 64/127 (50%), Positives = 86/127 (67%), Gaps = 3/127 (2%)
Query: 24 AQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKHKVTG 81
Q PIV L E + T EEDE+ + ++AKL+RF + D +WKERG G VKLLKHK G
Sbjct: 25 PQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKG 84
Query: 82 KVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGS 140
+RL+MR+ KTLKICANH + PMM ++ +AG+D++ VW+ AD+AD K EL IRF +
Sbjct: 85 AIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLN 144
Query: 141 VESEYFF 147
E+ F
Sbjct: 145 AENAQKF 151
>sp|P41920|YRB1_YEAST Ran-specific GTPase-activating protein 1 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB1 PE=1
SV=1
Length = 201
Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/141 (46%), Positives = 92/141 (65%), Gaps = 3/141 (2%)
Query: 6 EGDHREEEVPHNED--EDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQ 63
E D +EE +D E P+V LE+V V T EEDE+ + ++AKL+RFD D +
Sbjct: 43 EEDTKEETKKEGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKE 102
Query: 64 WKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AA 122
WKERG G K LK+K T KVR++MR+ KTLKICANH++ P +++ + G+D+S V+ A
Sbjct: 103 WKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTA 162
Query: 123 DYADGELKDELFCIRFGSVES 143
D A+GE + F IRFGS E+
Sbjct: 163 DIAEGEAEAFTFAIRFGSKEN 183
>sp|Q09717|RANG_SCHPO Ran-specific GTPase-activating protein 1 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sbp1 PE=1 SV=1
Length = 215
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 64/121 (52%), Positives = 83/121 (68%), Gaps = 1/121 (0%)
Query: 28 PIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVM 87
PIVKL V T EE+E ++AKL+RFDK ++WKERG G +LLKHK TGK RLVM
Sbjct: 77 PIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAASEWKERGTGDARLLKHKETGKTRLVM 136
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVESEYF 146
R+ KTLK+CANHL++P M + + G+D+S VW AAD ++GE E F IRF + E+
Sbjct: 137 RRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAADVSEGEPTAETFAIRFANSENANL 196
Query: 147 F 147
F
Sbjct: 197 F 197
>sp|P48820|RBP2_BOVIN E3 SUMO-protein ligase RanBP2 (Fragment) OS=Bos taurus GN=RANBP2
PE=2 SV=2
Length = 1085
Score = 121 bits (303), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 59/135 (43%), Positives = 86/135 (63%), Gaps = 4/135 (2%)
Query: 8 DHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKER 67
D +EEV HNED PIV L EV V +GEEDE+ + +AKLYR+D++ +QWK+R
Sbjct: 759 DGSDEEVVHNED----IHFEPIVSLPEVEVKSGEEDEEILFKERAKLYRWDREASQWKDR 814
Query: 68 GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADG 127
G G +K+L H V R++MR+ + K+CANH++ M ++ ++ + VW A+DYADG
Sbjct: 815 GVGDIKILWHTVKNYFRILMRRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADG 874
Query: 128 ELKDELFCIRFGSVE 142
E K E +RF + E
Sbjct: 875 EAKVEQLAVRFKTKE 889
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 56/122 (45%), Positives = 81/122 (66%), Gaps = 1/122 (0%)
Query: 18 EDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLK 76
E+E G P+V L + V V++GEE+E + +AKLYR+DKD QWKERG G +K+L+
Sbjct: 167 EEERDGQHFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDAGQWKERGIGDIKILQ 226
Query: 77 HKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCI 136
+ +VR+VMR+ + LK+CANH + P M++Q G ++ VW A D+ADGE K E +
Sbjct: 227 NYENKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWVWTACDFADGERKIEHLAV 286
Query: 137 RF 138
RF
Sbjct: 287 RF 288
>sp|Q7Z3J3|RGPD4_HUMAN RanBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens
GN=RGPD4 PE=2 SV=3
Length = 1758
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 88/138 (63%), Gaps = 2/138 (1%)
Query: 2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T+ G E +V E+ D G P+V L + V V++GEE+E + +A+LYR+DKD
Sbjct: 1312 SGTSVGTDEESDVTQEEERD-GQYFEPVVPLPDLVEVSSGEENEKVVFSHRAELYRYDKD 1370
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
QWKERG G +K+L++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW
Sbjct: 1371 VGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHTITPDMSLQNMKGTERVWVWT 1430
Query: 121 AADYADGELKDELFCIRF 138
A D+ADGE K E +RF
Sbjct: 1431 ACDFADGERKVEHLAVRF 1448
Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/141 (35%), Positives = 89/141 (63%), Gaps = 1/141 (0%)
Query: 3 STTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 61
+ T GD +++ + ++ P+V++ E+V + GEE E + KL+RFD +
Sbjct: 1015 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVIGEEGEKVLYSQGVKLFRFDAEV 1074
Query: 62 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121
QWKERG G +K+LK++V GK R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1075 RQWKERGLGNLKILKNEVNGKPRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSA 1134
Query: 122 ADYADGELKDELFCIRFGSVE 142
+D++DG+ K E +F + E
Sbjct: 1135 SDFSDGDAKLERLAAKFKTPE 1155
>sp|P0DJD0|RGPD1_HUMAN RANBP2-like and GRIP domain-containing protein 1 OS=Homo sapiens
GN=RGPD1 PE=2 SV=1
Length = 1748
Score = 120 bits (302), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 88/138 (63%), Gaps = 2/138 (1%)
Query: 2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T+ G E +V E+ D G P+V L + V V++GEE+E + +A+LYR+DKD
Sbjct: 1296 SGTSVGTDEESDVTQEEERD-GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAELYRYDKD 1354
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
QWKERG G +K+L++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW
Sbjct: 1355 VGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWT 1414
Query: 121 AADYADGELKDELFCIRF 138
A D+ADGE K E +RF
Sbjct: 1415 ACDFADGERKVEHLAVRF 1432
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 92/142 (64%), Gaps = 3/142 (2%)
Query: 3 STTEGD-HREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T GD ++++ ED D P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 999 ANTSGDFEKDDDACKTEDSD-DIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAE 1057
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
+QWKERG G +K+LK++V GK R++MR+ + LK+CANH + M+++ +G+D++ +W
Sbjct: 1058 ISQWKERGLGNLKILKNEVNGKPRMLMRRDQVLKVCANHWITTTMNLKPLSGSDRAWMWL 1117
Query: 121 AADYADGELKDELFCIRFGSVE 142
A+D++DG+ K E +F + E
Sbjct: 1118 ASDFSDGDAKLERLAAQFKTPE 1139
>sp|Q99666|RGPD5_HUMAN RANBP2-like and GRIP domain-containing protein 5/6 OS=Homo sapiens
GN=RGPD5 PE=1 SV=3
Length = 1765
Score = 120 bits (302), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 84/129 (65%), Gaps = 1/129 (0%)
Query: 11 EEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGA 69
EE V E+E G P+V L + V V++GEE+E + +A++YR+DKD QWKERG
Sbjct: 1319 EESVVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGI 1378
Query: 70 GTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGEL 129
G +K+L++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW A D+ADGE
Sbjct: 1379 GDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGER 1438
Query: 130 KDELFCIRF 138
K E +RF
Sbjct: 1439 KVEHLAVRF 1447
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Query: 3 STTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 61
+ T GD +++ + ++ P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 1014 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEV 1073
Query: 62 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121
QWKERG G +K+LK++V GK+R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1074 RQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSA 1133
Query: 122 ADYADGELKDELFCIRFGSVE 142
+D++DG+ K E +F + E
Sbjct: 1134 SDFSDGDAKLERLAAKFKTPE 1154
>sp|O14715|RGPD8_HUMAN RANBP2-like and GRIP domain-containing protein 8 OS=Homo sapiens
GN=RGPD8 PE=1 SV=2
Length = 1765
Score = 120 bits (301), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/129 (44%), Positives = 84/129 (65%), Gaps = 1/129 (0%)
Query: 11 EEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGA 69
EE V E+E G P+V L + V V++GEE+E + +A++YR+DKD QWKERG
Sbjct: 1319 EESVVTQEEERDGQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGI 1378
Query: 70 GTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGEL 129
G +K+L++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW A D+ADGE
Sbjct: 1379 GDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGER 1438
Query: 130 KDELFCIRF 138
K E +RF
Sbjct: 1439 KVEHLAVRF 1447
Score = 112 bits (280), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 91/141 (64%), Gaps = 1/141 (0%)
Query: 3 STTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 61
+ T GD +++ + ++ P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 1014 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEV 1073
Query: 62 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121
QWKERG G +K+LK++V GK+R++MR+ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1074 RQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSA 1133
Query: 122 ADYADGELKDELFCIRFGSVE 142
+D++DG+ K E +F + E
Sbjct: 1134 SDFSDGDAKLERLAAKFKTPE 1154
>sp|P0DJD1|RGPD2_HUMAN RANBP2-like and GRIP domain-containing protein 2 OS=Homo sapiens
GN=RGPD2 PE=2 SV=1
Length = 1756
Score = 119 bits (298), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 60/138 (43%), Positives = 87/138 (63%), Gaps = 2/138 (1%)
Query: 2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T+ G E +V E+ D G P+V L + V V++GEE+E + A+LYR+DKD
Sbjct: 1304 SGTSVGTDEESDVTQEEERD-GQYFEPVVPLPDLVEVSSGEENEQVVFSHMAELYRYDKD 1362
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
QWKERG G +K+L++ +VR+VMR+ + LK+CANH + P MS+Q G ++ VW
Sbjct: 1363 VGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWT 1422
Query: 121 AADYADGELKDELFCIRF 138
A D+ADGE K E +RF
Sbjct: 1423 ACDFADGERKVEHLAVRF 1440
Score = 108 bits (270), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 54/142 (38%), Positives = 92/142 (64%), Gaps = 3/142 (2%)
Query: 3 STTEGD-HREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T GD ++++ ED D P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 1007 ANTSGDFEKDDDACKTEDSD-DIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAE 1065
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
+QWKERG G +K+LK++V GK R++MR+ + LK+CANH + M+++ +G+D++ +W
Sbjct: 1066 ISQWKERGLGNLKILKNEVNGKPRMLMRRDQVLKVCANHWITTTMNLKPLSGSDRAWMWL 1125
Query: 121 AADYADGELKDELFCIRFGSVE 142
A+D++DG+ K E +F + E
Sbjct: 1126 ASDFSDGDAKLERLAAQFKTPE 1147
>sp|A6NKT7|RGPD3_HUMAN RanBP2-like and GRIP domain-containing protein 3 OS=Homo sapiens
GN=RGPD3 PE=2 SV=2
Length = 1758
Score = 117 bits (293), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 58/138 (42%), Positives = 86/138 (62%), Gaps = 2/138 (1%)
Query: 2 ASTTEGDHREEEVPHNEDEDTGAQVAPIVKLEE-VAVTTGEEDEDAILDLKAKLYRFDKD 60
+ T+ G E +V E+ D G P+V L + V V++GEE+E + +A+ YR+DKD
Sbjct: 1312 SGTSVGTDEESDVTQEEERD-GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEFYRYDKD 1370
Query: 61 GNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120
QWKERG G +K+L++ VR++MR+ + LK+CANH + P MS+Q G ++ VW
Sbjct: 1371 VGQWKERGIGDIKILQNYDNKHVRILMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWT 1430
Query: 121 AADYADGELKDELFCIRF 138
A D+ADGE K E +RF
Sbjct: 1431 ACDFADGERKVEHLAVRF 1448
Score = 112 bits (279), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 51/141 (36%), Positives = 92/141 (65%), Gaps = 1/141 (0%)
Query: 3 STTEGDHREEEVPHNEDEDTGAQVAPIVKL-EEVAVTTGEEDEDAILDLKAKLYRFDKDG 61
+ T GD +++ + ++ P+V++ E+V + TGEE E + KL+RFD +
Sbjct: 1015 ANTSGDFEKDDDAYKTEDSDDIHFEPVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEV 1074
Query: 62 NQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121
+QWKERG G +K+LK++V GKVR++M++ + LK+CANH + M+++ +G+D++ +W A
Sbjct: 1075 SQWKERGLGNLKILKNEVNGKVRMLMQREQVLKVCANHWITTTMNLKPLSGSDRAWMWSA 1134
Query: 122 ADYADGELKDELFCIRFGSVE 142
+D++DG+ K E +F + E
Sbjct: 1135 SDFSDGDAKLERLAAKFKTPE 1155
>sp|Q54KD9|RANG_DICDI Ran-specific GTPase-activating protein homolog OS=Dictyostelium
discoideum GN=ranbp1 PE=1 SV=1
Length = 194
Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 63/145 (43%), Positives = 89/145 (61%), Gaps = 11/145 (7%)
Query: 14 VPHNEDEDTGAQVAPIVKLEE------VAVTTGEEDEDAILDLKAKLYRFDKDGN-QWKE 66
P E ++ A V P V+ E V V T EE+ED + +++AKLYRFD D + QWKE
Sbjct: 31 APAAEIKEYAADVEPNVEYEATLKRDVVEVKTNEENEDTLFEIRAKLYRFDTDPSPQWKE 90
Query: 67 RGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAA-DYA 125
RG G V+ L+ K + ++R+VMR+ KTLK+C NH + P +S+ E G+DKS VW D++
Sbjct: 91 RGTGNVRFLEDKDSKRIRVVMRRDKTLKVCLNHHISPALSLGEMTGSDKSWVWKCPKDFS 150
Query: 126 DGELK---DELFCIRFGSVESEYFF 147
D E +ELF IRF + E+ F
Sbjct: 151 DEEKPEGVEELFAIRFATPENAGLF 175
>sp|Q86VV4|RNB3L_HUMAN Ran-binding protein 3-like OS=Homo sapiens GN=RANBP3L PE=2 SV=2
Length = 465
Score = 60.8 bits (146), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
LE++ V TGEE E +L + KL+ F+K W ERG GT++L T + RL+M
Sbjct: 284 LEKIDVITGEETEHNVLKINCKLFIFNKTTQSWIERGRGTLRLNDTASTDCGTLQSRLIM 343
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFF 147
R +L++ N + M +Q N K+ A D D +K +F I+ + ++ Y +
Sbjct: 344 RNQGSLRLILNSKLWAQMKIQR--ANHKNVRITATDLEDYSIK--IFLIQASAQDTAYLY 399
Query: 148 SFI 150
+ I
Sbjct: 400 AAI 402
>sp|P40517|YRB2_YEAST Ran-specific GTPase-activating protein 2 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=YRB2 PE=1
SV=1
Length = 327
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 38/102 (37%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 9 HREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERG 68
H E N EDT + P+ KL++ V +GEE E+ I + AKLY+ WKERG
Sbjct: 178 HSGSEQLANASEDTKDKPKPL-KLQKQEVKSGEESEECIYQVNAKLYQLSNIKEGWKERG 236
Query: 69 AGTVKLLKHK-VTGKVRLVMRQSKTLKICANHLVLPMMSVQE 109
G +K+ K K K R+VMR LK+ N ++ +VQ+
Sbjct: 237 VGIIKINKSKDDVEKTRIVMRSRGILKVILNIQLVKGFTVQK 278
>sp|Q9H6Z4|RANB3_HUMAN Ran-binding protein 3 OS=Homo sapiens GN=RANBP3 PE=1 SV=1
Length = 567
Score = 55.1 bits (131), Expect = 3e-07, Method: Composition-based stats.
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 6/103 (5%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 445
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELK 130
R +L++ N + M + + ++KS A D D +K
Sbjct: 446 RTQGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK 486
>sp|Q6PDH4|RNB3L_MOUSE Ran-binding protein 3-like OS=Mus musculus GN=Ranbp3l PE=2 SV=1
Length = 491
Score = 54.3 bits (129), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 63/123 (51%), Gaps = 8/123 (6%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLL----KHKVTGKVRLVM 87
LE++ V TGEE E +L + K++ F+K W ERG G ++L + T + RL+M
Sbjct: 309 LEKIDVITGEETEHNVLKINCKIFVFNKATESWSERGQGILRLNDTAGRECGTLQSRLIM 368
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFF 147
R +L++ N + M +Q + K+ A D D +K +F I+ + ++ + +
Sbjct: 369 RNQGSLRLVLNSRLWAQMKIQR--ASQKNLRITATDLEDDGIK--IFLIQASAKDTGFLY 424
Query: 148 SFI 150
+ I
Sbjct: 425 AAI 427
>sp|Q4R4T9|RANB3_MACFA Ran-binding protein 3 OS=Macaca fascicularis GN=RANBP3 PE=2 SV=1
Length = 499
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 318 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 377
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFF 147
R +L++ N + M + + ++KS A D D +K +F I S ++ +
Sbjct: 378 RTQGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQGVK--VFLISASSKDTGQLY 433
Query: 148 SFI 150
+ +
Sbjct: 434 AAL 436
>sp|Q9CT10|RANB3_MOUSE Ran-binding protein 3 OS=Mus musculus GN=Ranbp3 PE=1 SV=2
Length = 491
Score = 53.9 bits (128), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 310 LEKVEVITGEEAESNVLQIQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 369
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFF 147
R +L++ N + M Q ++KS A D D +K +F I S ++ +
Sbjct: 370 RTQGSLRLILNTKLWAQM--QMDKASEKSIRITATDAEDQGVK--VFLISASSKDTGQLY 425
Query: 148 SFI 150
+ +
Sbjct: 426 AAL 428
>sp|Q5R4Y2|RANB3_PONAB Ran-binding protein 3 OS=Pongo abelii GN=RANBP3 PE=2 SV=1
Length = 494
Score = 53.5 bits (127), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 62/123 (50%), Gaps = 8/123 (6%)
Query: 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVM 87
LE+V V TGEE E +L ++ KL+ FDK W ERG G ++L T + RLVM
Sbjct: 313 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 372
Query: 88 RQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFF 147
R +L++ N + M + + ++KS A D D +K +F I S ++ +
Sbjct: 373 RTQGSLRLILNTKLWAQMQIDK--ASEKSIRITAMDTEDQVVK--VFLISASSKDTGQLY 428
Query: 148 SFI 150
+ +
Sbjct: 429 AAL 431
>sp|P32499|NUP2_YEAST Nucleoporin NUP2 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=NUP2 PE=1 SV=2
Length = 720
Score = 53.5 bits (127), Expect = 7e-07, Method: Composition-based stats.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 2 ASTTEGDHREE---EVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFD 58
+ TT D +EE E NE +D A + + + + GEEDE A+ KAKL F+
Sbjct: 561 SQTTTNDSKEESTTEATGNESQDATKVDATPEESKPINLQNGEEDEVALFSQKAKLMTFN 620
Query: 59 KDGNQWKERGAGTVKLLKHKVT-GKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC 117
+ + RG G +KLLK K KVRL+ R + N V+ + A + +
Sbjct: 621 AETKSYDSRGVGEMKLLKKKDDPSKVRLLCRSDGMGNVLLNATVVDSFKYEPLAPGNDNL 680
Query: 118 VWHAADYADGEL 129
+ ADG+L
Sbjct: 681 IKAPTVAADGKL 692
>sp|Q9USL4|NUP61_SCHPO Nucleoporin nup61 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nup61 PE=1 SV=2
Length = 549
Score = 47.4 bits (111), Expect = 5e-05, Method: Composition-based stats.
Identities = 26/95 (27%), Positives = 50/95 (52%), Gaps = 5/95 (5%)
Query: 4 TTEGDHREEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQ 63
T+ G+ E+E N +++T + + + GEE+ED++ + +AK+YRFD
Sbjct: 401 TSNGNKSEQEEKENGNDETRSNDSLVS-----GKGKGEENEDSVFETRAKIYRFDATSKS 455
Query: 64 WKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 98
+ + G G +K+ + TG R++ R + K+ N
Sbjct: 456 YSDIGIGPLKINVDRDTGSARILARVEGSGKLLLN 490
>sp|Q09146|HBA1_SCHPO Brefeldin A resistance protein OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hba1 PE=1 SV=1
Length = 399
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 15 PHNEDEDTGAQVAPIV-KLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVK 73
P D+ +G + +L + + TGEE+E++I ++A+LY + WKERG G +K
Sbjct: 245 PKEADKGSGDSTKSTMHQLSDSEIITGEEEEESIFSVRARLYVVADEKKTWKERGQGILK 304
Query: 74 --LLKHKVTGKVRLVMRQSKTLKICANHLVLPMMS 106
+ K + +G RL+MR ++ N + MS
Sbjct: 305 VNVPKQRGSGSGRLLMRNDAVHRVIMNVPLFQGMS 339
>sp|O08587|NUP50_RAT Nuclear pore complex protein Nup50 OS=Rattus norvegicus GN=Nup50
PE=2 SV=2
Length = 467
Score = 38.9 bits (89), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 37 VTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTL-KI 95
V T ++EDA K KL+ + KD N++KE+G GT+ LK T K +L++R L I
Sbjct: 347 VVTEVKEEDAFYSKKCKLF-YKKD-NEFKEKGVGTLH-LKPTATQKTQLLVRADTNLGNI 403
Query: 96 CANHLVLPMMSVQEHAGND 114
N L+ P M N+
Sbjct: 404 LLNVLIPPNMPCTRTGKNN 422
>sp|Q9JIH2|NUP50_MOUSE Nuclear pore complex protein Nup50 OS=Mus musculus GN=Nup50 PE=1
SV=3
Length = 466
Score = 38.5 bits (88), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 42/79 (53%), Gaps = 4/79 (5%)
Query: 37 VTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTL-KI 95
V T ++EDA K KL+ + KD N++KE+G GT+ LK T K +L++R L I
Sbjct: 346 VVTEVKEEDAFYSKKCKLF-YKKD-NEFKEKGVGTLH-LKPTATQKTQLLVRADTNLGNI 402
Query: 96 CANHLVLPMMSVQEHAGND 114
N L+ P M N+
Sbjct: 403 LLNVLIAPNMPCTRTGKNN 421
>sp|Q8SSI6|YRB1_ENCCU Ran-specific GTPase-activating protein 1 OS=Encephalitozoon
cuniculi (strain GB-M1) GN=YRB1 PE=1 SV=1
Length = 219
Score = 37.0 bits (84), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 12/139 (8%)
Query: 14 VPHNEDEDTGAQ------VAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKER 67
VP +DE G + A +V+ + + + DE + + KLY F ++ +ER
Sbjct: 56 VPR-KDEGKGGEERDNIDAAEVVEKQRKHLEENQSDE-ILFKARCKLYYFSEETKALEER 113
Query: 68 GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAA-DYAD 126
GT+ + H + ++ M + + ++ NH + P Q H +W + D +
Sbjct: 114 AEGTMIIEMHSKSNLAKITMFRDQIGRLGCNHFINPRFKAQPHGKVSNGWMWMSTEDTVE 173
Query: 127 GEL---KDELFCIRFGSVE 142
+ K +LF ++F S E
Sbjct: 174 TDALRKKIQLFVVKFYSEE 192
>sp|Q9UKX7|NUP50_HUMAN Nuclear pore complex protein Nup50 OS=Homo sapiens GN=NUP50 PE=1
SV=2
Length = 468
Score = 35.8 bits (81), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 37 VTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTL-KI 95
V T ++EDA K KL+ + KD N++KE+G GT+ LK K +L++R L I
Sbjct: 348 VVTEVKEEDAFYSKKCKLF-YKKD-NEFKEKGIGTLH-LKPTANQKTQLLVRADTNLGNI 404
Query: 96 CANHLVLPMMSVQEHAGND 114
N L+ P M N+
Sbjct: 405 LLNVLIPPNMPCTRTGKNN 423
>sp|P19030|ENV_FIVSD Envelope glycoprotein gp150 OS=Feline immunodeficiency virus
(strain San Diego) GN=env PE=3 SV=1
Length = 854
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
Query: 79 VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGEL 129
+TG L R +K L C + L +P+++ G +++C+W+ + D E+
Sbjct: 303 LTGGKMLYNRDTKQLSYCTDPLQIPLINYT--FGPNQTCMWNTSQIQDPEI 351
>sp|Q9LQ68|GH34_ARATH Indole-3-acetic acid-amido synthetase GH3.4 OS=Arabidopsis thaliana
GN=GH3.4 PE=1 SV=1
Length = 597
Score = 30.0 bits (66), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Query: 12 EEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF 57
E +PHN D D G + +V+L +V V G+E E ++ A LYR+
Sbjct: 368 EFLPHNHDGDGGVEATSLVELADVEV--GKEYE-LVITTYAGLYRY 410
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 66,400,072
Number of Sequences: 539616
Number of extensions: 2665407
Number of successful extensions: 7042
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 6964
Number of HSP's gapped (non-prelim): 64
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)