Query 030641
Match_columns 174
No_of_seqs 113 out of 603
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 16:49:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030641.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030641hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00160 RanBD Ran-binding d 100.0 5.9E-41 1.3E-45 257.2 15.8 125 26-150 1-126 (130)
2 cd00835 RanBD Ran-binding doma 100.0 2.2E-38 4.8E-43 239.8 15.8 116 35-150 1-116 (122)
3 PF00638 Ran_BP1: RanBP1 domai 100.0 2.2E-37 4.7E-42 233.3 16.0 114 36-149 1-114 (122)
4 COG5171 YRB1 Ran GTPase-activa 100.0 1E-37 2.2E-42 247.5 5.2 140 18-157 63-205 (211)
5 KOG0864 Ran-binding protein RA 99.8 1.3E-22 2.8E-27 167.5 -1.2 130 19-148 31-164 (215)
6 KOG2724 Nuclear pore complex c 99.6 3.7E-16 7.9E-21 138.4 7.5 111 33-150 370-481 (487)
7 KOG0866 Ran-binding protein RA 99.4 9.7E-14 2.1E-18 119.6 1.9 109 31-143 143-255 (327)
8 cd00837 EVH1 EVH1 (Enabled, Va 99.4 2.2E-11 4.8E-16 90.0 14.0 96 44-149 1-98 (104)
9 PF00568 WH1: WH1 domain; Int 98.9 8.6E-08 1.9E-12 71.4 14.1 96 44-149 8-105 (111)
10 cd01207 Ena-Vasp Enabled-VASP- 98.8 5E-08 1.1E-12 73.2 11.0 98 44-151 1-103 (111)
11 cd01206 Homer Homer type EVH1 98.7 1.2E-07 2.6E-12 70.8 8.9 96 44-149 3-101 (111)
12 smart00461 WH1 WASP homology r 98.0 0.00029 6.3E-09 52.2 12.5 95 44-149 3-100 (106)
13 PF08553 VID27: VID27 cytoplas 96.9 0.035 7.6E-07 54.1 14.4 104 39-149 242-346 (794)
14 cd01205 WASP WASP-type EVH1 do 95.6 0.67 1.5E-05 34.5 13.7 93 45-149 5-99 (105)
15 PF06058 DCP1: Dcp1-like decap 92.4 3.7 8.1E-05 31.1 11.5 90 49-150 26-117 (122)
16 KOG4590 Signal transduction pr 91.1 0.23 5E-06 45.0 3.5 84 56-149 2-91 (409)
17 KOG3671 Actin regulatory prote 88.5 0.67 1.4E-05 43.1 4.4 86 52-149 45-133 (569)
18 COG5167 VID27 Protein involved 82.6 7 0.00015 37.1 8.0 98 45-149 229-326 (776)
19 PF07933 DUF1681: Protein of u 71.5 50 0.0011 26.4 9.2 103 44-149 3-116 (160)
20 KOG0866 Ran-binding protein RA 64.5 1.6 3.6E-05 38.4 -0.8 55 44-98 242-296 (327)
21 PF07576 BRAP2: BRCA1-associat 35.8 49 0.0011 24.6 3.3 28 130-157 53-81 (110)
22 PF10577 UPF0560: Uncharacteri 30.6 36 0.00078 33.7 2.2 28 48-75 205-232 (807)
23 cd01215 Dab Disabled (Dab) Pho 27.3 2.7E+02 0.0058 21.7 6.2 55 89-148 68-122 (139)
24 PF11531 CARM1: Coactivator-as 26.4 2.9E+02 0.0063 20.9 9.8 59 91-159 49-107 (114)
25 PHA02085 hypothetical protein 25.1 49 0.0011 23.6 1.6 16 135-150 2-17 (87)
26 PF14242 DUF4342: Domain of un 22.3 1.2E+02 0.0026 21.5 3.1 24 80-105 29-52 (84)
No 1
>smart00160 RanBD Ran-binding domain. Domain of apporximately 150 residues that stabilises the GTP-bound form of Ran (the Ras-like nuclear small GTPase).
Probab=100.00 E-value=5.9e-41 Score=257.23 Aligned_cols=125 Identities=45% Similarity=0.781 Sum_probs=120.0
Q ss_pred cceeeeceeeeeeccCccceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCC-CeEEEEEEeCCcceeEeeeeecCC
Q 030641 26 VAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVT-GKVRLVMRQSKTLKICANHLVLPM 104 (174)
Q Consensus 26 f~piv~L~~ve~~tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t-~k~RIvmR~d~~~kvlLN~~I~~~ 104 (174)
|+|+++|++|++.||||+|+++|++|||||+|++++++|++||+|+||||+++++ +++|||||++++++|+|||+|+++
T Consensus 1 ~~~~~~l~~ve~~tgEE~E~~lf~~r~KL~~~~~~~~~WkerG~G~lki~~~~~~~~~~RivmR~~~~~kv~lN~~i~~~ 80 (130)
T smart00160 1 FKPVVPLPDVEVKTGEEDEEVIFSARAKLYRFANDKKEWKERGVGDLKILKSKDNGGKVRIVMRRDGVLKVCANHPIFKS 80 (130)
T ss_pred CCCcccCccccccCCCcCeEEEEEEEeEEEEEcCCCCCCeeccEEEEEEEEcCCCCCeEEEEEEECCCceEEeccEecCC
Confidence 7899999999999999999999999999999998889999999999999999998 999999999999999999999999
Q ss_pred ceeeecCCCCeeEEEEeeecCCCCceeeEEEEEeCCHHHHHHhhch
Q 030641 105 MSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFI 150 (174)
Q Consensus 105 m~~~~~~~~~k~~~~~~~d~~dg~~k~~~~liRfks~e~A~eF~~i 150 (174)
|+++++.++.++++|++.|+++++.++++|+|||+++++|++|..+
T Consensus 81 ~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~irfk~~e~a~~f~~~ 126 (130)
T smart00160 81 MTLKPLAGSNRALKWTPEDFADDIPKLVLYAVRFKTKEEADSFKNI 126 (130)
T ss_pred cEEeecCCCcceEEEeeeecCCCCCceEEEEEEeCCHHHHHHHHHH
Confidence 9999887778899999999999988999999999999999999964
No 2
>cd00835 RanBD Ran-binding domain. Ran-binding domain; This domain of approximately 150 residues shares structural similarity to the PH domain, but lacks detectable sequence similarity. Ran is a Ras-like nuclear small GTPase, which regulates receptor-mediated transport between the nucleus and the cytoplasm. RanGTP hydrolysis is stimulated by RanGAP together with the Ran-binding domain containing acessory proteins RanBP1 and RanBP2. These accessory proteins stabilize the active GTP-bound form of Ran . The Ran-binding domain is found in multiple copies in Nuclear pore complex proteins.
Probab=100.00 E-value=2.2e-38 Score=239.79 Aligned_cols=116 Identities=51% Similarity=0.836 Sum_probs=110.2
Q ss_pred eeeeccCccceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCC
Q 030641 35 VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGND 114 (174)
Q Consensus 35 ve~~tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~ 114 (174)
|++.||||+|++||+.|||||+|++++++|++||+|+|||+++++++++|||||++++++|+||++|+++|+++++.+++
T Consensus 1 v~v~tGEE~E~~if~~r~KLy~~~~~~~~WkerG~G~lki~~~k~~~~~RivmR~d~~~kv~lN~~i~~~~~~~~~~~~~ 80 (122)
T cd00835 1 VEVKTGEEDEEVIFSVRAKLYRFDDETKEWKERGVGELKILKHKDTGKYRLLMRRDQVLKLCLNHKLVPGMKLQPMGNSD 80 (122)
T ss_pred CCcccCCcCcEEEEEEEeEEEEEcCCCCCCeeceEEEEEEEEcCCCCcEEEEEEeCCccEEEEeeEecCCcEEeecCCCC
Confidence 57899999999999999999999988899999999999999999999999999999999999999999999999987678
Q ss_pred eeEEEEeeecCCCCceeeEEEEEeCCHHHHHHhhch
Q 030641 115 KSCVWHAADYADGELKDELFCIRFGSVESEYFFSFI 150 (174)
Q Consensus 115 k~~~~~~~d~~dg~~k~~~~liRfks~e~A~eF~~i 150 (174)
++++|++.|++++++++++|+|||++++.|++|...
T Consensus 81 k~~~~~~~d~~~~~~~~~~~~lrfk~~~~a~~f~~~ 116 (122)
T cd00835 81 KSIVWAAMDFSDDEPKPETFAIRFKTEEIADEFKEA 116 (122)
T ss_pred cEEEEEeeecCCCCCcEEEEEEEECCHHHHHHHHHH
Confidence 999999999988778899999999999999999963
No 3
>PF00638 Ran_BP1: RanBP1 domain; InterPro: IPR000156 Ran is an evolutionary conserved member of the Ras superfamily that regulates all receptor-mediated transport between the nucleus and the cytoplasm. Ran Binding Protein 1 (RanBP1) has guanine nucleotide dissociation inhibitory activity, specific for the GTP form of Ran and also functions to stimulate Ran GTPase activating protein(GAP)-mediated GTP hydrolysis by Ran. RanBP1 contributes to maintaining the gradient of RanGTP across the nuclear envelope high (GDI activity) or the cytoplasmic levels of RanGTP low (GAP cofactor) []. All RanBP1 proteins contain an approx 150 amino acid residue Ran binding domain. Ran BP1 binds directly to RanGTP with high affinity. There are four sites of contact between Ran and the Ran binding domain. One of these involves binding of the C-terminal segment of Ran to a groove on the Ran binding domain that is analogous to the surface utilised in the EVH1-peptide interaction []. Nup358 contains four Ran binding domains. The structure of the first of these is known [].; GO: 0046907 intracellular transport; PDB: 2Y8F_A 2Y8G_B 2CRF_A 1XKE_A 1RRP_D 2EC1_A 3M1I_B 1K5D_E 3OAN_A 3N7C_A ....
Probab=100.00 E-value=2.2e-37 Score=233.31 Aligned_cols=114 Identities=52% Similarity=0.802 Sum_probs=105.6
Q ss_pred eeeccCccceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCe
Q 030641 36 AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDK 115 (174)
Q Consensus 36 e~~tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k 115 (174)
+++||||+|++||+.|||||+|++++++|++||+|+|||+++++++++|||||++++++|+|||+|+++|++++..++.+
T Consensus 1 ev~tgEE~E~~l~~~r~Kl~~~~~~~~~W~erG~G~l~i~~~k~~~~~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~~~~ 80 (122)
T PF00638_consen 1 EVKTGEEDEEILFEVRAKLYRFDKEDKEWKERGVGTLKILKHKETGKYRLVMRRDGTGKVLLNHPIFKGMKLKPMKGSEK 80 (122)
T ss_dssp CCCHSSSSEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSCEEEEEEEETTTTEEEEEEE--TTC-EEESTTTTT
T ss_pred CCcccccCcEEEEEEEEEEEEEeCCCCCccccceeEEEEEEccCCcceEEEEEEcccCceeEEEEecCCceecccccCCc
Confidence 57899999999999999999999888999999999999999999999999999999999999999999999999888889
Q ss_pred eEEEEeeecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641 116 SCVWHAADYADGELKDELFCIRFGSVESEYFFSF 149 (174)
Q Consensus 116 ~~~~~~~d~~dg~~k~~~~liRfks~e~A~eF~~ 149 (174)
+++|++.|++++.+++.+|+|||++++.|++|+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~irf~~~e~a~~f~~ 114 (122)
T PF00638_consen 81 SLVWTAIDYADEEGKPETYLIRFKSAEDADEFKK 114 (122)
T ss_dssp EEEEEEEECTTSSSEEEEEEEE-SSHHHHHHHHH
T ss_pred EEEEEeccccCCCCceEEEEEEECCHHHHHHHHH
Confidence 9999999999988899999999999999999996
No 4
>COG5171 YRB1 Ran GTPase-activating protein (Ran-binding protein) [Intracellular trafficking and secretion]
Probab=100.00 E-value=1e-37 Score=247.50 Aligned_cols=140 Identities=42% Similarity=0.727 Sum_probs=132.3
Q ss_pred CCCCCCCccceeeeceeeeeeccCccceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeCCcceeEe
Q 030641 18 EDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICA 97 (174)
Q Consensus 18 ~e~~~~~~f~piv~L~~ve~~tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d~~~kvlL 97 (174)
.++.++.+|+|+|.|+.+.+++-||||.++|.+|||||+|+.+.+.|++||.|+++|++|+.|++.||+||+|++++||+
T Consensus 63 ~pesp~ihfepvV~l~~v~~ktneedE~vlfK~RaKLfrFd~~akewkERgtGd~~~lkhkktnk~ri~MrRDktlklca 142 (211)
T COG5171 63 GPESPNIHFEPVVELQRVHLKTNEEDETVLFKARAKLFRFDEEAKEWKERGTGDMIILKHKKTNKARITMRRDKTLKLCA 142 (211)
T ss_pred CCCCCCcchHHHHHHHhhhhhccccchhhhhhhhhhheeehHHHHHHHhcCCCcEEEEeccccCceEEEEeechhhhhhh
Confidence 45778899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeecCCceeeecCCCCeeEEEE-eeecCCCCceeeEEEEEeCCHHHHHHhhc--hhhhcccc
Q 030641 98 NHLVLPMMSVQEHAGNDKSCVWH-AADYADGELKDELFCIRFGSVESEYFFSF--IDSSKLNH 157 (174)
Q Consensus 98 N~~I~~~m~~~~~~~~~k~~~~~-~~d~~dg~~k~~~~liRfks~e~A~eF~~--i~~~k~n~ 157 (174)
||.|.|.|+++|+.+++++|+|. ..|.++|+.+.++|+|||-+.++|+.|+. ..+|..|.
T Consensus 143 NH~i~Pe~kl~PnvgsdrsWvw~~taD~~Egea~a~tFairF~s~Ena~~FkEefek~qe~N~ 205 (211)
T COG5171 143 NHFINPEFKLQPNVGSDRSWVWMSTADTVEGEAKAQTFAIRFYSEENAKRFKEEFEKGQEHNE 205 (211)
T ss_pred hhccCcceeccCCCCcccceEEEeecccccCcceeeEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999 46999999999999999999999999994 46777764
No 5
>KOG0864 consensus Ran-binding protein RANBP1 and related RanBD domain proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.84 E-value=1.3e-22 Score=167.53 Aligned_cols=130 Identities=46% Similarity=0.753 Sum_probs=121.8
Q ss_pred CCCCCCccceeeeceeeeeeccCccceeEEEeee-eEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeCCc-ceeE
Q 030641 19 DEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKA-KLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKT-LKIC 96 (174)
Q Consensus 19 e~~~~~~f~piv~L~~ve~~tGEEdE~~lf~~ra-KLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d~~-~kvl 96 (174)
++++..+++|++.+..+.+.+|+++|.++|..++ +||.|+.+.++|++||.|.++|++|++++..|++||+|++ +++|
T Consensus 31 ~~~~~~~~~~~~~~~~~~v~t~e~~e~~~~~~~s~~l~~f~~~~kq~kerG~g~~~~~kn~~~g~~r~~m~rdst~~~v~ 110 (215)
T KOG0864|consen 31 EESPAKQVEPQEELEKVEVKTGEEDEEIIFDQRSEKLYVFDNETKQWKERGTGKVKLLKNKDTGSTRDLMRRDSTKLKVC 110 (215)
T ss_pred ccCccccccccccccchhhhccchhhhhhhhhhhhhHHhhhhhhhhhhccCCcceEeeecCCCCcceeeeeecccchhhc
Confidence 4777789999999999999999999999999996 9999999999999999999999999999999999999999 7999
Q ss_pred eeeeecCCceeeecCCCCeeEEE-EeeecCCCCceeeEEEEEeCCHHH-HHHhh
Q 030641 97 ANHLVLPMMSVQEHAGNDKSCVW-HAADYADGELKDELFCIRFGSVES-EYFFS 148 (174)
Q Consensus 97 LN~~I~~~m~~~~~~~~~k~~~~-~~~d~~dg~~k~~~~liRfks~e~-A~eF~ 148 (174)
.||+|.++|++.++....++++| ++.|++++.....+|.|||.+.+. ..-|.
T Consensus 111 sn~~~~~~~~~~p~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~~~e~s~~~f~ 164 (215)
T KOG0864|consen 111 SNHFIGPSFKLEPPAWEEDSGKWNSLADFSETQPKAEKLAIRFAKVESSGKAFK 164 (215)
T ss_pred ccccccCcccccCCcccCcchhhhhhhhhcccccchhHHHHHhhhhcccchhhH
Confidence 99999999999999888888998 578999999999999999999988 66776
No 6
>KOG2724 consensus Nuclear pore complex component NPAP60L/NUP50 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=3.7e-16 Score=138.43 Aligned_cols=111 Identities=20% Similarity=0.269 Sum_probs=89.0
Q ss_pred eeeeeeccCccceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeC-CcceeEeeeeecCCceeeecC
Q 030641 33 EEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQS-KTLKICANHLVLPMMSVQEHA 111 (174)
Q Consensus 33 ~~ve~~tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d-~~~kvlLN~~I~~~m~~~~~~ 111 (174)
++|+...--| ++.+|+.|||+|++.. +.+.++|+|+|||..... ++..|++|.+ ++|+|+||..|+++|+++++.
T Consensus 370 pkve~~ev~e-dda~ysKkckvfykKd--KEf~dkGvgtl~lkp~~~-~k~qlLvradtnlGnilLN~Ll~kgMkctr~g 445 (487)
T KOG2724|consen 370 PKVETVEVQE-DDAVYSKKCKVFYKKD--KEFTDKGVGTLHLKPNDR-GKFQLLVRADTNLGNILLNSLLNKGMKCTRVG 445 (487)
T ss_pred CeeEeecccC-ccchhccccceEEEec--ccccccccceeecccccc-cceeeeehhccchhHHHHHHhhcCCCcceecc
Confidence 3444444333 4889999999999965 799999999999987765 9999999986 478999999999999999986
Q ss_pred CCCeeEEEEeeecCCCCceeeEEEEEeCCHHHHHHhhch
Q 030641 112 GNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFI 150 (174)
Q Consensus 112 ~~~k~~~~~~~d~~dg~~k~~~~liRfks~e~A~eF~~i 150 (174)
++...|+ |.. ..+...|+++|||||+++.|++|..+
T Consensus 446 knnvlIv--cvp-~~e~t~p~TmLIRvktad~aD~L~~k 481 (487)
T KOG2724|consen 446 KNNVLIV--CVP-PSESTEPATMLIRVKTADGADKLTDK 481 (487)
T ss_pred CCceEEE--EeC-CcccccceeEEEEecccchHHHHHHH
Confidence 5543333 333 33446899999999999999999963
No 7
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=9.7e-14 Score=119.63 Aligned_cols=109 Identities=35% Similarity=0.493 Sum_probs=93.9
Q ss_pred eceeeeeeccCccceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCC----eEEEEEEeCCcceeEeeeeecCCce
Q 030641 31 KLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTG----KVRLVMRQSKTLKICANHLVLPMMS 106 (174)
Q Consensus 31 ~L~~ve~~tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~----k~RIvmR~d~~~kvlLN~~I~~~m~ 106 (174)
.+..|++.+|||+|.++|++.||+|.|++-...|.++|.|.+|++....++ ..|+|||..++++|++|..||..|.
T Consensus 143 ~~~aVE~~tgee~e~n~~d~~ck~f~f~k~~~sw~e~g~~~lr~n~~as~~~~~~~~r~vfrt~~slrv~~n~kv~~~m~ 222 (327)
T KOG0866|consen 143 GLSAVEVITGEEDESNKLDMPCKLFAFDKPSQSWVERGRSNLRDNDMASTGDGTTQSRLVFRTSSSLRVILNTKVWAAMQ 222 (327)
T ss_pred cceeeeeecCccCccceeccchhhhhccccchhhhhhccccccchhhhhccCCcccceeEEeccCcceeecchHHHHHHH
Confidence 356899999999999999999999999997789999999999999877543 4899999999999999999999999
Q ss_pred eeecCCCCeeEEEEeeecCCCCceeeEEEEEeCCHHH
Q 030641 107 VQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVES 143 (174)
Q Consensus 107 ~~~~~~~~k~~~~~~~d~~dg~~k~~~~liRfks~e~ 143 (174)
.++. +.++++.+++|.++.. ...|+++++....
T Consensus 223 ~ek~--sq~~ir~~a~~~e~~~--v~vFl~~~~~~rt 255 (327)
T KOG0866|consen 223 IEKA--SQKSIRITAMDTEGQG--VKVFLISASSKRT 255 (327)
T ss_pred Hhhh--cccceeeccccccCCc--ceEEEeeccccch
Confidence 9874 5678999999976543 3478888876544
No 8
>cd00837 EVH1 EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. EVH1 (Enabled, Vasp-Homology) or WASP Homology (WH1) domain. The EVH1 domain binds to other proteins at proline rich sequences in either FPPPP or PPXXF motifs. It is found in the cytoskeletal reorganization proteins Enabled VASP, and WASP, and in the synaptic scaffolding protein Homer. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=99.38 E-value=2.2e-11 Score=89.96 Aligned_cols=96 Identities=20% Similarity=0.293 Sum_probs=83.7
Q ss_pred ceeEEEeeeeEEEEccCCCCceee--eeEEEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEEe
Q 030641 44 EDAILDLKAKLYRFDKDGNQWKER--GAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121 (174)
Q Consensus 44 E~~lf~~raKLy~~~~~~~~WkeR--G~G~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~ 121 (174)
+.+|+.++|.||.+++++++|..+ |.|.+.+.++...+.+||++++-+..++++|+.|+++|.+.+. .+....|..
T Consensus 1 ~~~l~~~~a~v~~~~~~~~~W~~~~~~~g~v~~~~d~~~~~y~i~~~~~~~~~vv~~~~l~~~~~y~~~--~~~Fh~w~~ 78 (104)
T cd00837 1 EQIISTAVAQVYTADPSTGKWVPASGGTGAVSLVKDSTRNTYRIRGVDIQDQKVIWNQEIYKGLKYTQA--TPFFHQWED 78 (104)
T ss_pred CceEEEEEEEEEEECCCCCceEECCCCeEEEEEEEECCCCEEEEEEEecCCCeEEEEEEecCCcEEeec--CCeEEEEEc
Confidence 367899999999999988999999 9999999999888889999999889999999999999999763 455666653
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641 122 ADYADGELKDELFCIRFGSVESEYFFSF 149 (174)
Q Consensus 122 ~d~~dg~~k~~~~liRfks~e~A~eF~~ 149 (174)
. + ..|-+.|.+.++|++|..
T Consensus 79 ~---~-----~~~GL~F~se~eA~~F~~ 98 (104)
T cd00837 79 D---N-----CVYGLNFASEEEAAQFRK 98 (104)
T ss_pred C---C-----cEEEEeeCCHHHHHHHHH
Confidence 2 1 279999999999999985
No 9
>PF00568 WH1: WH1 domain; InterPro: IPR000697 The EVH1 (WH1, RanBP1-WASP) domain is found in multi-domain proteins implicated in a diverse range of signalling, nuclear transport and cytoskeletal events. This domain of around 115 amino acids is present in species ranging from yeast to mammals. Many EVH1-containing proteins associate with actin-based structures and play a role in cytoskeletal organisation. EVH1 domains recognise and bind the proline-rich motif FPPPP with low-affinity, further interactions then form between flanking residues [][]. WASP family proteins contain a EVH1 (WH1) in their N-terminals which bind proline-rich sequences in the WASP interacting protein. Proteins of the RanBP1 family contain a WH1 domain in their N-terminal region, which seems to bind a different sequence motif present in the C-terminal part of RanGTP protein [,]. Tertiary structure of the WH1 domain of the Mena protein revealed structure similarities with the pleckstrin homology (PH) domain. The overall fold consists of a compact parallel beta-sandwich, closed along one edge by a long alpha-helix. A highly conserved cluster of three surface-exposed aromatic side-chains forms the recognition site for the molecules target ligands. [].; GO: 0005515 protein binding; PDB: 1I2H_A 1DDV_A 1DDW_A 1EGX_A 3SYX_A 1TJ6_B 1XOD_B 1EVH_A 1I7A_B 2JP2_A ....
Probab=98.91 E-value=8.6e-08 Score=71.38 Aligned_cols=96 Identities=18% Similarity=0.250 Sum_probs=81.0
Q ss_pred ceeEEEeeeeEEEEccCCCC-cee-eeeEEEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEEe
Q 030641 44 EDAILDLKAKLYRFDKDGNQ-WKE-RGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA 121 (174)
Q Consensus 44 E~~lf~~raKLy~~~~~~~~-Wke-RG~G~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~ 121 (174)
..++..++|.||..++.+++ |.. .|.|.+.+.++.....+||.++.-+.+++++|+.|+++|.+... .+....|..
T Consensus 8 ~~~i~~~vA~v~~~~p~~~~~W~~~~~~g~v~~v~d~~~~~y~I~~~~~~~~~~v~e~~l~~~~~Y~~~--~~~Fh~f~~ 85 (111)
T PF00568_consen 8 CQSIATAVAQVYQADPDTKRQWSPVKGTGVVCFVKDNSRRSYFIRLYDLQDGKVVWEQELYPGFVYTKA--RPFFHQFED 85 (111)
T ss_dssp EEEEEEEEEEEEEEETTTSESEEESSSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESTT-EEEEE--SSSEEEEEE
T ss_pred ceEEEEEEEEEEEEEcCCCCcEeeCCeEEEEEEEEECCCCEEEEEEEEccccEEEEEeEecCCCEEEeC--CCcEEEEEe
Confidence 37899999999999887666 999 99999999998877889999999668999999999999999874 445566652
Q ss_pred eecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641 122 ADYADGELKDELFCIRFGSVESEYFFSF 149 (174)
Q Consensus 122 ~d~~dg~~k~~~~liRfks~e~A~eF~~ 149 (174)
.+ ..|-|.|.+.++|..|..
T Consensus 86 ~~--------~~~GLnF~se~eA~~F~~ 105 (111)
T PF00568_consen 86 DD--------CVYGLNFASEEEADQFYK 105 (111)
T ss_dssp TT--------CEEEEEESSHHHHHHHHH
T ss_pred CC--------eEEEEecCCHHHHHHHHH
Confidence 11 189999999999999985
No 10
>cd01207 Ena-Vasp Enabled-VASP-type homology (EVH1) domain. Enabled-VASP-type homology (EVH1) domain. The EVH1 domain binds to other proteins at proline rich sequences. It is found in proteins involved in cytoskeletal reorganization such as Enabled and VASP. Ena-VASP type EVH1 domains specifically recognize FPPPP motifs in the focal adhesion proteins zyxin and vinculin, and the ActA surface protein of Listeria monocytogenes. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.85 E-value=5e-08 Score=73.24 Aligned_cols=98 Identities=20% Similarity=0.431 Sum_probs=81.7
Q ss_pred ceeEEEeeeeEEEEccCCCCceeeeeE-----EEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEE
Q 030641 44 EDAILDLKAKLYRFDKDGNQWKERGAG-----TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCV 118 (174)
Q Consensus 44 E~~lf~~raKLy~~~~~~~~WkeRG~G-----~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~ 118 (174)
|..|+++||..|.+|+.++.|..-|-| .+.|.+++..+.+||+=|+..-.++++|..|+++|++.+. .+..-.
T Consensus 1 e~~i~~~rA~Vm~~d~~tk~W~P~~~~~~~ls~V~~~~~~~~~~yrIvg~~~~~~~~v~e~~l~~~l~y~k~--~p~Fh~ 78 (111)
T cd01207 1 EQSICQARASVMVYDDSNKKWVPAGGGSQGFSRVQIYHHPRNNTFRVVGRKLQDHQVVINCAIVKGLKYNQA--TPTFHQ 78 (111)
T ss_pred CCceEEEEEEeeEEcCCCCcEEcCCCCCCCcceEEEEEcCCCCEEEEEEeecCCCcEEEEEEecCCceeeec--CCccee
Confidence 568999999999999999999987775 7888888877889999998777899999999999999873 444555
Q ss_pred EEeeecCCCCceeeEEEEEeCCHHHHHHhhchh
Q 030641 119 WHAADYADGELKDELFCIRFGSVESEYFFSFID 151 (174)
Q Consensus 119 ~~~~d~~dg~~k~~~~liRfks~e~A~eF~~i~ 151 (174)
|. ++ ...|=|-|.+.++|..|...-
T Consensus 79 w~-----~~---~~v~GLnF~Se~eA~~F~~~v 103 (111)
T cd01207 79 WR-----DA---RQVYGLNFGSKEDATMFASAM 103 (111)
T ss_pred ee-----cC---CeEEeeccCCHHHHHHHHHHH
Confidence 54 22 148999999999999999643
No 11
>cd01206 Homer Homer type EVH1 domain. Homer type EVH1 domain. Homer is a synaptic scaffolding protein, involved in neuronal signaling. It contains an EVH1 domain, which binds to both neurotransmitter receptors, such as the metabotropic glutamate receptor (mGluR) and to other scaffolding proteins via PPXXF motifs, in order to target them to the synaptic junction. It has a PH-like fold, despite having minimal sequence similarity to PH or PTB domains.
Probab=98.70 E-value=1.2e-07 Score=70.78 Aligned_cols=96 Identities=18% Similarity=0.333 Sum_probs=76.5
Q ss_pred ceeEEEeeeeEEEEccCC-CCceeeeeEEE--EEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEE
Q 030641 44 EDAILDLKAKLYRFDKDG-NQWKERGAGTV--KLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120 (174)
Q Consensus 44 E~~lf~~raKLy~~~~~~-~~WkeRG~G~L--kl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~ 120 (174)
|..||+.||..|.||+.+ +.|..-|-|.. ++..+.....+|||=+.+ .+++||..|.++|++.+. +++.-.|.
T Consensus 3 E~~I~~arA~V~~yd~~tKk~WvPs~~~~~~V~~y~~~~~ntfRIi~~~~--~~~iINc~i~~~~~y~ka--s~~FhQWr 78 (111)
T cd01206 3 EQPIFSTRAHVFQIDPKTKKNWIPASKHAVTVSYFYDSTRNVYRIISVGG--TKAIINSTITPNMTFTKT--SQKFGQWA 78 (111)
T ss_pred ccccceeeeEEEEECCCCcceeEeCCCCceeEEEEecCCCcEEEEEEecC--cEEEEeccccCCcceeec--cccccccc
Confidence 788999999999999975 59998887744 445676678899999875 499999999999999874 44455554
Q ss_pred eeecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641 121 AADYADGELKDELFCIRFGSVESEYFFSF 149 (174)
Q Consensus 121 ~~d~~dg~~k~~~~liRfks~e~A~eF~~ 149 (174)
|.. .-+.|=|-|.+.++|+.|..
T Consensus 79 -----D~R-~~tVyGLnF~Sk~ea~~F~~ 101 (111)
T cd01206 79 -----DSR-ANTVYGLGFSSEQQLTKFAE 101 (111)
T ss_pred -----ccc-cceeeecccCCHHHHHHHHH
Confidence 321 23689999999999999984
No 12
>smart00461 WH1 WASP homology region 1. Region of the Wiskott-Aldrich syndrome protein (WASp) that contains point mutations in the majority of patients with WAS. Unknown function. Ena-like WH1 domains bind polyproline-containing peptides, and that Homer contains a WH1 domain.
Probab=97.99 E-value=0.00029 Score=52.16 Aligned_cols=95 Identities=19% Similarity=0.289 Sum_probs=73.5
Q ss_pred ceeEEEeeeeEEEEccCCCCceeeeeE-EEEEEEeC--CCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEE
Q 030641 44 EDAILDLKAKLYRFDKDGNQWKERGAG-TVKLLKHK--VTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWH 120 (174)
Q Consensus 44 E~~lf~~raKLy~~~~~~~~WkeRG~G-~Lkl~~~~--~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~ 120 (174)
+.++...+|-.+.|+..++.|...|.| .+.+.... .+.-+||+=+..+. ++++|+.|+++|.+.+. .+..-.|.
T Consensus 3 ~~~~~~~~avV~~y~~~~~~W~~~~~gg~~~~~~~~~~~~~~~ri~~~~~~~-~vv~e~ely~~~~y~~~--~~~Fh~f~ 79 (106)
T smart00461 3 SQCIILARAVVQLYDADTKKWVPTGEGGAANLVIDKNQRSYFFRIVGIKGQD-KVIWNQELYKNFKYNQA--TPTFHQWA 79 (106)
T ss_pred CCCEEEEEEEEEEEeCCCCCeEECCCCCEEEEEEEecCCeEEEEEEEecCCC-eEEEEEeccCCCEEeec--CCceEEEE
Confidence 567888999999998877889999999 77776543 33457888887544 99999999999999863 34344443
Q ss_pred eeecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641 121 AADYADGELKDELFCIRFGSVESEYFFSF 149 (174)
Q Consensus 121 ~~d~~dg~~k~~~~liRfks~e~A~eF~~ 149 (174)
. + -..|=+-|.+.++|+.|..
T Consensus 80 ~-----~---~~~~GLnF~se~EA~~F~~ 100 (106)
T smart00461 80 D-----D---KCVYGLNFASEEEAKKFRK 100 (106)
T ss_pred e-----C---CeEEEeecCCHHHHHHHHH
Confidence 2 1 1379999999999999985
No 13
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.85 E-value=0.035 Score=54.09 Aligned_cols=104 Identities=17% Similarity=0.152 Sum_probs=75.7
Q ss_pred ccCccceeEEEeeeeEEEEccCCCCceeeeeE-EEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeE
Q 030641 39 TGEEDEDAILDLKAKLYRFDKDGNQWKERGAG-TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC 117 (174)
Q Consensus 39 tGEEdE~~lf~~raKLy~~~~~~~~WkeRG~G-~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~ 117 (174)
...+....++...|+||.|+..++.|.-.+.. .++|.+. |+.-..+...+..+.+|++.|.+.|++.-. ....++
T Consensus 242 ~~p~~~~~~~~~~~~L~l~d~~~~~f~lq~~~v~~~i~~~---~~~~y~l~i~~~~~~~l~~~v~s~mNp~F~-~e~lSF 317 (794)
T PF08553_consen 242 APPEAGEILASESAELYLYDPPTGKFVLQDSSVTAKIIET---GKWEYWLQIEGKDKIWLGQPVSSDMNPVFN-FEHLSF 317 (794)
T ss_pred cCCCccceeeeeeEEEEEEcCCCceEEEecCcEEEEEEEc---CCeEEEEEEecCCceEEeeeccCCcCeEEE-cceeEE
Confidence 33444558999999999999988999877643 3555554 454444555556678899999999997754 234577
Q ss_pred EEEeeecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641 118 VWHAADYADGELKDELFCIRFGSVESEYFFSF 149 (174)
Q Consensus 118 ~~~~~d~~dg~~k~~~~liRfks~e~A~eF~~ 149 (174)
+|..... + +...+|+|||++.+.-..|..
T Consensus 318 iFN~~~~-~--~~~~sw~lkF~~~~~~~~F~~ 346 (794)
T PF08553_consen 318 IFNYYTE-D--GSAYSWLLKFKDQEDYERFQE 346 (794)
T ss_pred EEEeEcC-C--CceEEEEEEeCCHHHHHHHHH
Confidence 8875431 2 267799999999999999994
No 14
>cd01205 WASP WASP-type EVH1 domain. WASP-type EVH1 domain. Wiskott-Aldrich syndrome (WAS) is an X-linked recessive disease, characterized by eczema, immunodeficiency, and thrombocytopenia. The majority of patients with WAS, or a milder version of the disorder, X-linked thrombocytopenia (XLT), have point mutations in the EVH1 domain of WASP (Wiskott-Aldrich syndrome protein). WASP is an actin regulatory protein consisting of an N-terminal EVH1 domain, a basic region, a GTP binding domain, a proline rich region and a WH2 acidic region. Yeast members lack the GTP binding domain. WASP binds a 25 residue proline rich motif from the WASP Interacting Protein (WIP) via its N-terminal EVH1 domain.
Probab=95.56 E-value=0.67 Score=34.50 Aligned_cols=93 Identities=18% Similarity=0.234 Sum_probs=68.2
Q ss_pred eeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeE--EEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEEee
Q 030641 45 DAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKV--RLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAA 122 (174)
Q Consensus 45 ~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~--RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~ 122 (174)
.++..+=+.||.-.++.+.|.-...|.+-+-+......+ ||+=.. .++++..+-|+.+|.+... +..- +..
T Consensus 5 ~il~~aVvqlY~a~p~~~~W~~~~~Gvl~~vkD~~~~sy~lrl~D~~--~~~v~weqElY~~f~y~~~----r~fF-htF 77 (105)
T cd01205 5 KILATAVVQLYKAYPDPGRWTKTLTGAVCLVKDNVQKSYFIRLFDIK--ANRIIWEQELYDNFEYQQP----RPFF-HTF 77 (105)
T ss_pred eEEEEEEEEEEEecCCCCeeEEEeEEEEEEEEECCCCEEEEEEEEcc--CCcEEEEEEcccCcEEccC----CCcE-EEE
Confidence 456667789999877778999999999999887644443 554444 4899999999999998753 2222 222
Q ss_pred ecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641 123 DYADGELKDELFCIRFGSVESEYFFSF 149 (174)
Q Consensus 123 d~~dg~~k~~~~liRfks~e~A~eF~~ 149 (174)
.-.+ -++-+.|.+.++|+.|..
T Consensus 78 e~d~-----c~~GL~Fade~EA~~F~k 99 (105)
T cd01205 78 EGDD-----CVVGLNFADETEAAEFRK 99 (105)
T ss_pred eccC-----cEEEEEECCHHHHHHHHH
Confidence 2112 268899999999999985
No 15
>PF06058 DCP1: Dcp1-like decapping family; InterPro: IPR010334 An essential step in mRNA turnover is decapping. In yeast, two proteins have been identified that are essential for decapping, Dcp1 (this family) and Dcp2 (IPR007722 from INTERPRO). The precise role of these proteins in the decapping reaction has not been established. Evidence suggests that the Dcp1 may enhance the function of Dcp2 [].; PDB: 1Q67_A 2QKM_C 2QKL_A.
Probab=92.44 E-value=3.7 Score=31.08 Aligned_cols=90 Identities=18% Similarity=0.381 Sum_probs=60.0
Q ss_pred EeeeeEEEEccCCCCceeeee-EEEEEEEeCCCCeEEEE-EEeCCcceeEeeeeecCCceeeecCCCCeeEEEEeeecCC
Q 030641 49 DLKAKLYRFDKDGNQWKERGA-GTVKLLKHKVTGKVRLV-MRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYAD 126 (174)
Q Consensus 49 ~~raKLy~~~~~~~~WkeRG~-G~Lkl~~~~~t~k~RIv-mR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~d~~d 126 (174)
...|-||.|+..+++|...|+ |+|-|-+.....+++++ |=+.+...++.. |.+++.++.. +..+.+. +
T Consensus 26 a~~v~vY~f~~~~~~W~K~~iEG~LFv~~r~~~p~~~~~vlNR~~~~n~~~~--i~~~~~~e~~---~~~l~~r--~--- 95 (122)
T PF06058_consen 26 ASHVVVYKFDHETNEWEKTDIEGTLFVYKRSSSPRYGLIVLNRRSTENFVEP--ITPDLDFELQ---DPYLIYR--N--- 95 (122)
T ss_dssp EEEEEEEEEETTTTEEEEEEEEEEEEEEEEETTS-ECEEEEESSSS--EEEE--E-SGGGEEEE---TTEEEEE--E---
T ss_pred CCeEEEEeecCCCCcEeecCcEeeEEEEEeecccceEEEEecCCCCCceeee--cCCCcEEEEe---CCEEEEE--c---
Confidence 367999999998999998886 89998765545566644 444445555544 7888888764 2245554 1
Q ss_pred CCceeeEEEEEeCCHHHHHHhhch
Q 030641 127 GELKDELFCIRFGSVESEYFFSFI 150 (174)
Q Consensus 127 g~~k~~~~liRfks~e~A~eF~~i 150 (174)
+. ..-|-|=|=+++++++....
T Consensus 96 ~~--~~I~GiWf~~~~d~~ri~~~ 117 (122)
T PF06058_consen 96 DN--QEIYGIWFYDDEDRQRIYNL 117 (122)
T ss_dssp TT--TEEEEEEESSHHHHHHHHHH
T ss_pred CC--ceEEEEEEEeHHHHHHHHHH
Confidence 11 14688999999998887654
No 16
>KOG4590 consensus Signal transduction protein Enabled, contains WH1 domain [Signal transduction mechanisms]
Probab=91.05 E-value=0.23 Score=45.05 Aligned_cols=84 Identities=21% Similarity=0.441 Sum_probs=61.7
Q ss_pred EEccCCCCceeeeeE-----EEEEEEeCCCCeEEEEEEeCCc-ceeEeeeeecCCceeeecCCCCeeEEEEeeecCCCCc
Q 030641 56 RFDKDGNQWKERGAG-----TVKLLKHKVTGKVRLVMRQSKT-LKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGEL 129 (174)
Q Consensus 56 ~~~~~~~~WkeRG~G-----~Lkl~~~~~t~k~RIvmR~d~~-~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~d~~dg~~ 129 (174)
.+|...+.|.--|.| .++|..|....-+|||-|.-+- ..|+||..|.++++|.+.... .-.|- +.
T Consensus 2 ~ydd~~k~W~p~g~g~~~~s~V~~~~h~~~n~frVvg~k~qdd~~vVlnC~I~kGlkYnkatpt--FHqWR-----~a-- 72 (409)
T KOG4590|consen 2 TYDDSQKGWLPAGGGGAALSKVRIYHHTSGNTFRVVGRKSQDDQQVVLNCLILKGLKYNKATPT--FHQWR-----DA-- 72 (409)
T ss_pred cccccccccccccccCcccceeEEEeeccCCceeEEeeecccCcccccccccccCcceeecccc--hhhhh-----hh--
Confidence 466667889877743 3556566666789999998665 889999999999999764322 22232 22
Q ss_pred eeeEEEEEeCCHHHHHHhhc
Q 030641 130 KDELFCIRFGSVESEYFFSF 149 (174)
Q Consensus 130 k~~~~liRfks~e~A~eF~~ 149 (174)
.+.|-+.|.+.++|.-|..
T Consensus 73 -rqvyGLnFqs~~DA~~Fa~ 91 (409)
T KOG4590|consen 73 -RQVYGLTFQSEQDARAFAR 91 (409)
T ss_pred -hhhhcccccChhhhhhhhh
Confidence 3579999999999999985
No 17
>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]
Probab=88.46 E-value=0.67 Score=43.13 Aligned_cols=86 Identities=21% Similarity=0.301 Sum_probs=59.4
Q ss_pred eeEEEEccCCCCceeeee-EEEEEEEeCCCC--eEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEEeeecCCCC
Q 030641 52 AKLYRFDKDGNQWKERGA-GTVKLLKHKVTG--KVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGE 128 (174)
Q Consensus 52 aKLy~~~~~~~~WkeRG~-G~Lkl~~~~~t~--k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~d~~dg~ 128 (174)
++||+-+.+...|..+|. |-|-|-+..... -.||+-..+ ++||..+.|+.+|.|.. ++.+. +.+.-.|+
T Consensus 45 VqLY~a~p~~~~W~~~~~~Gal~lVkD~~~rsyFlrl~di~~--~rliWdqELY~nf~y~q----~r~ff-htFegddc- 116 (569)
T KOG3671|consen 45 VQLYKAYPDPNHWNKTGLCGALCLVKDNAQRSYFLRLVDIVN--NRLIWDQELYQNFEYRQ----PRTFF-HTFEGDDC- 116 (569)
T ss_pred HHHHhhcCChhhhccccCceeEEEeeccccceeeeEEeeecC--ceeeehHHhhhhceecc----Cccce-eeeccccc-
Confidence 356666666679999999 999987664222 236665554 56999999999999864 33322 22221122
Q ss_pred ceeeEEEEEeCCHHHHHHhhc
Q 030641 129 LKDELFCIRFGSVESEYFFSF 149 (174)
Q Consensus 129 ~k~~~~liRfks~e~A~eF~~ 149 (174)
+.-+-|-+.++|++|..
T Consensus 117 ----~aGLnF~~E~EA~~F~k 133 (569)
T KOG3671|consen 117 ----QAGLNFASEEEAQKFRK 133 (569)
T ss_pred ----eeeecccCHHHHHHHHH
Confidence 57788999999999995
No 18
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=82.61 E-value=7 Score=37.13 Aligned_cols=98 Identities=15% Similarity=0.125 Sum_probs=67.9
Q ss_pred eeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCCCCeeEEEEeeec
Q 030641 45 DAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADY 124 (174)
Q Consensus 45 ~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~d~ 124 (174)
+.++...+-||+|++-...+...- -.+++-.- ++|++-..+|-++--+++|-..|.++|.+.-... .-+++|+-++.
T Consensus 229 e~~~~~~~~l~~yd~~~e~Filq~-p~Vkv~i~-d~G~~~fw~~Iet~d~~~l~~~V~~~~np~f~~~-~~tFvwny~~~ 305 (776)
T COG5167 229 ETLYSKNGVLSRYDTATERFILQK-PHVKVVIV-DDGKEVFWIRIETRDDVILFEEVRTETNPYFDQK-NTTFVWNYMED 305 (776)
T ss_pred ceeeeecceEEeecchhheeeecC-CceEEEEE-ecCCeEEEEEEecccceeehheeccccCcceecc-cceeeeeeecc
Confidence 567999999999987432211100 00111111 4688888888887778899999999988765333 34788986652
Q ss_pred CCCCceeeEEEEEeCCHHHHHHhhc
Q 030641 125 ADGELKDELFCIRFGSVESEYFFSF 149 (174)
Q Consensus 125 ~dg~~k~~~~liRfks~e~A~eF~~ 149 (174)
+ ...+|++||++-....+|.+
T Consensus 306 --n--~~~s~~LrF~d~~~~~qF~~ 326 (776)
T COG5167 306 --N--VFHSFSLRFLDNLDFLQFLS 326 (776)
T ss_pred --c--chheeeeeecchhHHHHHHH
Confidence 2 46799999999999999985
No 19
>PF07933 DUF1681: Protein of unknown function (DUF1681); InterPro: IPR012466 NECAP 1 localises to clathrin-coated pits and direct binding to the globular ear domain of the alpha-adaptin subunit (alpha-ear) of the adaptor protein 2 (AP-2) complex. This interaction is mediated by a specific motif, WVQF, that uses a distinct alpha-ear interface relative to known alpha-ear-binding partners. Disruption of this interaction blocks clathrin-mediated endocytosis [].; GO: 0006897 endocytosis, 0016020 membrane; PDB: 1TQZ_A.
Probab=71.49 E-value=50 Score=26.35 Aligned_cols=103 Identities=14% Similarity=0.220 Sum_probs=56.7
Q ss_pred ceeEEE-eeeeEEEEccC-------CCCce---eeeeEEEEEEEeCCCCeEEEEEEeCCcceeEeeeeecCCceeeecCC
Q 030641 44 EDAILD-LKAKLYRFDKD-------GNQWK---ERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAG 112 (174)
Q Consensus 44 E~~lf~-~raKLy~~~~~-------~~~Wk---eRG~G~Lkl~~~~~t~k~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~ 112 (174)
|.+||. ..|-+|+.-|- ...|. ..=.|-|||....+..++.|++-...+|.+-..+++.....+++...
T Consensus 3 e~vL~~~~ev~VY~IPP~~s~~GyrAadW~~~~~iwtGrlrV~~~g~~~~v~i~leD~~tgeLFA~~P~~~~~~VE~v~D 82 (160)
T PF07933_consen 3 ERVLFVIPEVHVYKIPPRTSNKGYRAADWTLDKPIWTGRLRVVEKGDKCKVDIRLEDPSTGELFAQCPYDDYAAVEPVID 82 (160)
T ss_dssp S---B--SSEEEEE--S--SSSS--HHHH--SSS-EEEEEEEE--SSSE--EEEEE-SS--SS-EEEEE-SS--EEE-TT
T ss_pred eEEEEEcCcEEEEECCCCCCCCCeecccCCCCCceeeeEEEEEEcCCeeEEEEEecCCCCcceEEECcccCCCceEEeec
Confidence 455565 33677776441 12343 34478899987765555688877878999999999999878888778
Q ss_pred CCeeEEEEeeecCCCCceeeEEEEEeCCHHHHHHhhc
Q 030641 113 NDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSF 149 (174)
Q Consensus 113 ~~k~~~~~~~d~~dg~~k~~~~liRfks~e~A~eF~~ 149 (174)
|.|.+++...|. .++-..+=|-|.+=.+|=.|..
T Consensus 83 SSRYFvlRv~d~---~Gr~AfiGiGF~eRsdAFDF~v 116 (160)
T PF07933_consen 83 SSRYFVLRVQDP---SGRHAFIGIGFRERSDAFDFNV 116 (160)
T ss_dssp --S-EEEEEEET---TTEEEEEEEE-S-HHHHHHHHH
T ss_pred ccceEEEEEEcC---CCcEEEEEEeeccccccccHHH
Confidence 888888887774 3466778899999888888883
No 20
>KOG0866 consensus Ran-binding protein RANBP3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.52 E-value=1.6 Score=38.42 Aligned_cols=55 Identities=11% Similarity=0.053 Sum_probs=51.3
Q ss_pred ceeEEEeeeeEEEEccCCCCceeeeeEEEEEEEeCCCCeEEEEEEeCCcceeEee
Q 030641 44 EDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICAN 98 (174)
Q Consensus 44 E~~lf~~raKLy~~~~~~~~WkeRG~G~Lkl~~~~~t~k~RIvmR~d~~~kvlLN 98 (174)
+.-+|-.+++.++++--.+.+..||++.+++...++.++.|+..+.++.+.++.|
T Consensus 242 ~v~vFl~~~~~~rtd~i~~s~~~~~i~~~~~~~~r~~~kak~~~~~e~s~~~l~~ 296 (327)
T KOG0866|consen 242 GVKVFLISASSKRTDQIYKSLSHRSIAALKSRVERECLKAKMPAPEEGSAPLLKE 296 (327)
T ss_pred cceEEEeeccccchhhhhhhhhhhhhhhhhcccchhhhhcccCCCcccccccccc
Confidence 7889999999999987778999999999999988888899999999999999988
No 21
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=35.79 E-value=49 Score=24.58 Aligned_cols=28 Identities=21% Similarity=0.195 Sum_probs=20.4
Q ss_pred eeeEEEEEeCCHHHHHHhhch-hhhcccc
Q 030641 130 KDELFCIRFGSVESEYFFSFI-DSSKLNH 157 (174)
Q Consensus 130 k~~~~liRfks~e~A~eF~~i-~~~k~n~ 157 (174)
..-..||+|++.+.|++|... -++.=|.
T Consensus 53 nrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 53 NRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred ceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344778999999999999965 3444443
No 22
>PF10577 UPF0560: Uncharacterised protein family UPF0560; InterPro: IPR018890 This family of proteins has no known function.
Probab=30.60 E-value=36 Score=33.67 Aligned_cols=28 Identities=29% Similarity=0.471 Sum_probs=23.4
Q ss_pred EEeeeeEEEEccCCCCceeeeeEEEEEE
Q 030641 48 LDLKAKLYRFDKDGNQWKERGAGTVKLL 75 (174)
Q Consensus 48 f~~raKLy~~~~~~~~WkeRG~G~Lkl~ 75 (174)
+..+.=+++||+..+.|++.|+|.+|-.
T Consensus 205 ~gd~IPAW~FD~ktG~Wv~~G~G~Vk~~ 232 (807)
T PF10577_consen 205 HGDSIPAWRFDEKTGAWVKSGLGMVKRE 232 (807)
T ss_pred CCCeeeeeEecCCcceeEecceEEEEee
Confidence 4456678999999999999999988763
No 23
>cd01215 Dab Disabled (Dab) Phosphotyrosine-binding domain. Disabled (Dab) Phosphotyrosine-binding domain. Dab is a cystosolic adaptor protein, which binds to the cytoplasmic tails of lipoprotein receptors, such as ApoER2 and VLDLR, via its PTB domain. The dab PTB domain has a preference for unphosphorylated tyrosine within an NPxY motif. Additionally, the Dab PTB domain, which is structurally similar to PH domains, binds to phosphatidlyinositol phosphate 4,5 bisphosphate in a manner characteristic of phosphoinositide binding PH domains.
Probab=27.34 E-value=2.7e+02 Score=21.71 Aligned_cols=55 Identities=11% Similarity=0.112 Sum_probs=35.3
Q ss_pred eCCcceeEeeeeecCCceeeecCCCCeeEEEEeeecCCCCceeeEEEEEeCCHHHHHHhh
Q 030641 89 QSKTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFS 148 (174)
Q Consensus 89 ~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~d~~dg~~k~~~~liRfks~e~A~eF~ 148 (174)
.+.++.++.||+|..=--+.+...++|.+.+.+-+. ++ .-. .+-+|++..|++..
T Consensus 68 D~~T~~ll~~~~i~rISfca~D~~d~r~FsyI~~~~-~~--~H~--f~~~k~~k~A~~i~ 122 (139)
T cd01215 68 DEKTGAVLHHHPVHRISFIARDSTDARAFGYVYGEP-GG--KHR--FYGIKTAQAADQVV 122 (139)
T ss_pred cCCCCcEEEeeceeeEEEEecCCCCCeEEEEEEEcC-CC--cEE--EEEEEhHHcchhhh
Confidence 345789999999998444555556778888887762 33 323 33455666666544
No 24
>PF11531 CARM1: Coactivator-associated arginine methyltransferase 1 N terminal; InterPro: IPR020989 Histone-arginine methyltransferase CARM1 (also known as coactivator-associated arginine methyltransferase 1) methylates arginine residues in several proteins involved in DNA packaging, transcription regulation, and mRNA stability []. CARM1 is recruited by several transcription factors and plays a critical role in gene expression as a positive regulator. This entry represents the N-terminal domain of CARM1. Structurally this domain adopts a PH domain-like fold, a common structural scaffold found in a broad range proteins with diverse activities, which is frequently found to regulate protein-protein interactions []. ; GO: 0009405 pathogenesis; PDB: 2OQB_B 2Y1W_C 2Y1X_D.
Probab=26.35 E-value=2.9e+02 Score=20.91 Aligned_cols=59 Identities=12% Similarity=-0.041 Sum_probs=39.2
Q ss_pred CcceeEeeeeecCCceeeecCCCCeeEEEEeeecCCCCceeeEEEEEeCCHHHHHHhhchhhhcccccc
Q 030641 91 KTLKICANHLVLPMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFIDSSKLNHVT 159 (174)
Q Consensus 91 ~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~~d~~dg~~k~~~~liRfks~e~A~eF~~i~~~k~n~~~ 159 (174)
+..-.++-..|+++..+.+.. ..++.++. ++ .+.||+|++..+-..|+.+....-|..+
T Consensus 49 ~~~~cvfkc~VsreTEccRVG--~~SfliTl-g~-------nSlLl~F~s~~df~~F~n~lk~cr~~~~ 107 (114)
T PF11531_consen 49 GECVCVFKCTVSRETECCRVG--KQSFLITL-GC-------NSLLLQFASPADFSSFHNILKRCRNQKN 107 (114)
T ss_dssp TT--EEEEEEEETTSEEEEET--TTEEEEEE-TT-------EEEEEE-SSHHHHHHHHHHHCCCTT---
T ss_pred CCCEEEEEEEEcCCcceeEec--ceEEEEEe-cC-------CeEEEEecCHHHHHHHHHHHHHHhCCCC
Confidence 345567778888888887753 34677664 31 2799999999999999987666555544
No 25
>PHA02085 hypothetical protein
Probab=25.15 E-value=49 Score=23.55 Aligned_cols=16 Identities=38% Similarity=0.389 Sum_probs=14.3
Q ss_pred EEEeCCHHHHHHhhch
Q 030641 135 CIRFGSVESEYFFSFI 150 (174)
Q Consensus 135 liRfks~e~A~eF~~i 150 (174)
-|||||++....|..+
T Consensus 2 kIrFKS~e~R~~Fa~~ 17 (87)
T PHA02085 2 KIRFKSEEHKAMFARR 17 (87)
T ss_pred ceeecCHhHHHHHHhh
Confidence 4899999999999876
No 26
>PF14242 DUF4342: Domain of unknown function (DUF4342)
Probab=22.28 E-value=1.2e+02 Score=21.53 Aligned_cols=24 Identities=8% Similarity=0.174 Sum_probs=20.3
Q ss_pred CCeEEEEEEeCCcceeEeeeeecCCc
Q 030641 80 TGKVRLVMRQSKTLKICANHLVLPMM 105 (174)
Q Consensus 80 t~k~RIvmR~d~~~kvlLN~~I~~~m 105 (174)
....||+++.+. +++||.+++-+.
T Consensus 29 GNv~Ri~Ikk~~--~tll~iPlt~gv 52 (84)
T PF14242_consen 29 GNVTRIIIKKDD--KTLLDIPLTAGV 52 (84)
T ss_pred cCeEEEEEEcCC--eEEEEeeeehHH
Confidence 467899999986 999999998853
Done!