Query 030641
Match_columns 174
No_of_seqs 112 out of 603
Neff 6.2
Searched_HMMs 29240
Date Tue Mar 26 18:26:59 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/030641.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2342-2346//hhsearch_pdb/030641hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1k5d_B RAN-specific GTPase-act 1.0 1 1 285.7 14.9 150 1-150 1-154 (201)
2 3m1i_B RAN-specific GTPase-act 1.0 1 1 284.5 15.2 144 14-157 43-189 (191)
3 4hat_B RAN-specific GTPase-act 1.0 1 1 275.8 15.2 135 23-157 1-138 (140)
4 1rrp_B Nuclear pore complex pr 1.0 1 1 260.2 14.9 126 25-150 1-127 (134)
5 1xke_A RAN-binding protein 2; 1.0 1 1 237.8 16.0 119 38-156 1-121 (130)
6 2crf_A RAN binding protein 3; 1.0 1 1 226.9 14.1 122 27-152 9-134 (150)
7 2y8g_A Ranbp3-B, RAN-binding p 1.0 1 1 226.6 12.1 116 32-151 2-121 (138)
8 3n7c_A ABR034WP; nuclear pore 1.0 1 1 223.5 13.4 119 35-156 1-122 (130)
9 2ec1_A Nucleoporin 50 kDa; ran 1.0 1 1 205.6 12.6 110 36-150 4-118 (125)
10 1qc6_A EVH1 domain from ENA/VA 1.0 1 1 97.5 12.2 98 43-150 2-104 (130)
No 1
>1k5d_B RAN-specific GTPase-activating protein; ranbp1, rangap, GAP, signal transduction, nuclear transport, GTP hydrolysis, ground state; HET: GNP; 2.70A {Homo sapiens} SCOP: b.55.1.3 PDB: 1k5g_B*
Probab=1.00 E-value=1 Score=285.67 Aligned_cols=150 Identities=44% Similarity=0.764 Sum_probs=137.0
Q ss_pred CCCCCCCCC-CCCCCCCCCCCCCCCCCCEEEECEEEEEECCCCCCEEEEEEEEEEEEE--CCCCCCCEEEEEEEEEEEEE
Q ss_conf 988889998-655799998878899522136500135541676611599963269987--05899962543499999872
Q 030641 1 MASTTEGDH-REEEVPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRF--DKDGNQWKERGAGTVKLLKH 77 (174)
Q Consensus 1 ~~~~~~~~~-~~~~~~~~~e~~~~~~f~p~v~L~~v~~~tGEE~E~~lf~~raKLy~~--~~e~~~WkerG~G~LkI~k~ 77 (174)
|+...+..+ +++++.+.+|++++++|+||++|+++++++|||+|++||++|||||+| +++.++|++||+|+||||+|
T Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~f~Piv~L~~vev~TGEEdEe~lf~~RaKLf~f~~d~~~~~WKERGvG~lkIlk~ 80 (201)
T 1k5d_B 1 MAAAKDTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKH 80 (201)
T ss_dssp ---------------------CCCCCCCCSCCCCCCCCCCSCSSCCCSEEEEEEEEEECCTTSSCCEEEEEEEEEEEEEC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEC
T ss_conf 99732244444443345665677876123210663135678756168888764688861356678761000688999870
Q ss_pred CCCCEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCEEEEEEE-EECCCCCCEEEEEEEEECCHHHHHHHHCH
Q ss_conf 89993999998279400685223328844554179970599983-00599981136999990998888774605
Q 030641 78 KVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVESEYFFSFI 150 (174)
Q Consensus 78 ~~t~~~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~~~~~-~d~~dg~~k~~~~lirfks~e~A~eF~~~ 150 (174)
+.++++|||||+++++||||||+|+++|+++++.+++++|+|++ .|++|+.+++++|+|||++++.|++|+..
T Consensus 81 k~t~k~RlvMR~d~~~kV~LN~~I~~~m~~~~~~~s~ks~v~~~~~d~ad~~~k~e~~~iRfks~e~A~~f~~~ 154 (201)
T 1k5d_B 81 KEKGAIRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTK 154 (201)
T ss_dssp SSSCCEEEEEEETTTCCEEEEEECCSSCCCCBCSSCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHH
T ss_pred CCCCCEEEEEEECCCCEEEEEEEECCCCEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHH
T ss_conf 89984899999778644998448268945646589970599971454678887408999997999999999999
No 2
>3m1i_B RAN-specific GTPase-activating protein 1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=284.47 Aligned_cols=144 Identities=44% Similarity=0.741 Sum_probs=133.5
Q ss_pred CCCCCCCCCCCCCCEEEECEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEECCCC
Q ss_conf 99998878899522136500135541676611599963269987058999625434999998728999399999827940
Q 030641 14 VPHNEDEDTGAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTL 93 (174)
Q Consensus 14 ~~~~~e~~~~~~f~p~v~L~~v~~~tGEE~E~~lf~~raKLy~~~~e~~~WkerG~G~LkI~k~~~t~~~RIvmR~d~~~ 93 (174)
..+.+|++++++|+||++|++|++++|||+|++||++|||||+|+++.++|++||+|+||||+|++++++|||||+++++
T Consensus 43 ~~~~~ee~~~~~f~Pvv~L~~vev~tGEEdEe~lf~~RaKLf~f~~~~~~WKERGvG~lkilk~ket~k~RllMR~d~~~ 122 (191)
T 3m1i_B 43 EGDDAPESPDIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTL 122 (191)
T ss_dssp ------------------CCCCCCCCSCTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTC
T ss_pred CCCCCCCCCCCCCCCCEECCCCCCCCCCCCEEEEEEEEEEEEEEECCCCCCCCEEEEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 44566668898701510455023667876603566776578997068887421337889989818999699999946863
Q ss_pred EEEEEEEECCCCEEEECCCCCEEEEEEE-EECCCCCCEEEEEEEEECCHHHHHHHHC-H-HHHCCCC
Q ss_conf 0685223328844554179970599983-0059998113699999099888877460-5-4101026
Q 030641 94 KICANHLVLPMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVESEYFFSF-I-DSSKLNH 157 (174)
Q Consensus 94 kvlLN~~I~~~m~~~~~~~~~k~~~~~~-~d~~dg~~k~~~~lirfks~e~A~eF~~-~-~~~k~n~ 157 (174)
+|||||+|+++|+++++.+++++|+|++ .|+++|.+++++|+|||++++.|++|+. + ++++.|.
T Consensus 123 kV~LN~~I~~~m~~~~~~~sdks~v~~~~~D~sdge~k~e~~aIRFk~~E~A~eF~~~~eeaq~~nk 189 (191)
T 3m1i_B 123 KICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINK 189 (191)
T ss_dssp CEEEEEECCTTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCCEEEECCCCCCEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_conf 5998532388868857789983299973675789985318999997999999999999999999851
No 3
>4hat_B RAN-specific GTPase-activating protein 1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_B* 4hav_B* 4haw_B* 4hax_B* 4hay_B* 4haz_B* 4hb0_B* 4hb2_B* 4hb3_B* 4hb4_B* 4gmx_B* 4gpt_B*
Probab=1.00 E-value=1 Score=275.83 Aligned_cols=135 Identities=47% Similarity=0.784 Sum_probs=127.1
Q ss_pred CCCCCEEEECEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEEC
Q ss_conf 99522136500135541676611599963269987058999625434999998728999399999827940068522332
Q 030641 23 GAQVAPIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVL 102 (174)
Q Consensus 23 ~~~f~p~v~L~~v~~~tGEE~E~~lf~~raKLy~~~~e~~~WkerG~G~LkI~k~~~t~~~RIvmR~d~~~kvlLN~~I~ 102 (174)
+++|+||++|++|+++||||+|+++|++|||||+|+++.++|++||+|+|||++|++++++|||||+|++++|||||+|+
T Consensus 1 ~~~f~pvv~l~~vev~tGEE~E~~lf~~raKLf~f~~~~~~WkerG~G~lkilk~k~~~k~RllmR~d~~~kv~lN~~i~ 80 (140)
T 4hat_B 1 DIHFEPVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDKDAKEWKERGTGDCKFLKNKKTNKVRILMRRDKTLKICANHIIA 80 (140)
T ss_dssp ------------------CTTEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTTCCEEEEEECTTTCCEEEEEECC
T ss_pred CCCCCCEEECCEECCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEC
T ss_conf 98402504766062668875706888886789998278887633117999999808999599999936863699873744
Q ss_pred CCCEEEECCCCCEEEEEEE-EECCCCCCEEEEEEEEECCHHHHHHHHCH--HHHCCCC
Q ss_conf 8844554179970599983-00599981136999990998888774605--4101026
Q 030641 103 PMMSVQEHAGNDKSCVWHA-ADYADGELKDELFCIRFGSVESEYFFSFI--DSSKLNH 157 (174)
Q Consensus 103 ~~m~~~~~~~~~k~~~~~~-~d~~dg~~k~~~~lirfks~e~A~eF~~~--~~~k~n~ 157 (174)
|+|+++++.+++++|+|++ .|++||.+++++|+|||++++.|++|+.. ++++.|.
T Consensus 81 ~~m~~~~~~~s~k~~v~~~~~D~sdg~~~~~~~~iRfk~~e~A~~f~~~~ee~~~~n~ 138 (140)
T 4hat_B 81 PEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQEINK 138 (140)
T ss_dssp TTCCCBCCTTCSSEEEEEEEEECTTSSCEEEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCEEEEECCCCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHHC
T ss_conf 8818857689983499972665788987318999998999999999999999999751
No 4
>1rrp_B Nuclear pore complex protein NUP358; complex (small GTPase/nuclear protein), small GTPase, nuclear transport; HET: GNP; 2.96A {Homo sapiens} SCOP: b.55.1.3
Probab=1.00 E-value=1 Score=260.17 Aligned_cols=126 Identities=48% Similarity=0.853 Sum_probs=121.0
Q ss_pred CCCEEEECE-EEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEECC
Q ss_conf 522136500-1355416766115999632699870589996254349999987289993999998279400685223328
Q 030641 25 QVAPIVKLE-EVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLP 103 (174)
Q Consensus 25 ~f~p~v~L~-~v~~~tGEE~E~~lf~~raKLy~~~~e~~~WkerG~G~LkI~k~~~t~~~RIvmR~d~~~kvlLN~~I~~ 103 (174)
||+||++|+ +|++.+|||+|+++|+.|||||+|+++.++|++||+|+|||++|++++++|||||++++++|+|||+|++
T Consensus 1 ~~~pi~~l~~~vev~tGEE~E~~lf~~raKL~~~~~~~~~WkerG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~ 80 (134)
T 1rrp_B 1 HFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSGKIRLLMRREQVLKICANHYISP 80 (134)
T ss_dssp CCCCSSCCCCCCCCCCSCCSEEEEEEEEEEEEEECSSSSCEEEEEEEEEEEEEESSSCCCEEEEECTTTCCEEECCBCCS
T ss_pred CCCCCEECCCEEEECCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCEEEEEEECC
T ss_conf 96562578860751378867079999988999982667886147479999879779984899999868771999807068
Q ss_pred CCEEEECCCCCEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHCH
Q ss_conf 84455417997059998300599981136999990998888774605
Q 030641 104 MMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFI 150 (174)
Q Consensus 104 ~m~~~~~~~~~k~~~~~~~d~~dg~~k~~~~lirfks~e~A~eF~~~ 150 (174)
+|+++++.+++++|+|++.|++|+++++++|++||++++.|++|+..
T Consensus 81 ~m~~~~~~~s~~~~~~~~~d~~d~~~k~~~~~irfk~~e~A~~f~~~ 127 (134)
T 1rrp_B 81 DMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCK 127 (134)
T ss_dssp SCCCBCSTTCTTEEEEEEEECTTSSCEEEEEEEECSSHHHHHHHHHH
T ss_pred CCEEEECCCCCEEEEEECCCCCCCCCCEEEEEEEECCHHHHHHHHHH
T ss_conf 95673558998389997456667888508999998999999999999
No 5
>1xke_A RAN-binding protein 2; beta barrel, pleckstrin-homology (PH) domain, phosphotyrosine-binding (PTB) domain, protein transport; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=1.00 E-value=1 Score=237.81 Aligned_cols=119 Identities=39% Similarity=0.750 Sum_probs=111.1
Q ss_pred ECCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCEEE
Q ss_conf 41676611599963269987058999625434999998728999399999827940068522332884455417997059
Q 030641 38 TTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC 117 (174)
Q Consensus 38 ~tGEE~E~~lf~~raKLy~~~~e~~~WkerG~G~LkI~k~~~t~~~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~ 117 (174)
.+|||+|+++|++|||||+|+++.++|+|||+|+|||++|++++++|||||+|++++|||||+|+++|+++++.+++++|
T Consensus 1 gtGEE~E~~l~~~raKL~~~~~~~~~WkERG~G~lkil~~k~~~k~RlvmR~d~~~kv~lN~~i~~~m~~~~~~~s~~~~ 80 (130)
T 1xke_A 1 GSGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRMLMRREQVLKVCANHWITTTMNLKPLSGSDRAW 80 (130)
T ss_dssp CCSSSCEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEETTSSCEEEEEEETTTTEEEEEEECCTTSCEEECTTCSSCE
T ss_pred CCCCCCEEEEEEEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEEEEEEECCCCEEEEECEECCCCEEEECCCCCEEE
T ss_conf 98876627999998799998278898604747989998818998699999986877699925907895772358997079
Q ss_pred EEEEEECCCCCCEEEEEEEEECCHHHHHHHHC-H-HHHCCC
Q ss_conf 99830059998113699999099888877460-5-410102
Q 030641 118 VWHAADYADGELKDELFCIRFGSVESEYFFSF-I-DSSKLN 156 (174)
Q Consensus 118 ~~~~~d~~dg~~k~~~~lirfks~e~A~eF~~-~-~~~k~n 156 (174)
+|++.|++|+++++++|+|||+++++|++|+. + ++++.+
T Consensus 81 ~~~~~d~~d~~~~~~~~~irfks~e~a~~f~~~~ee~k~~~ 121 (130)
T 1xke_A 81 MWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEECQRLL 121 (130)
T ss_dssp EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCCCCEEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 99823467898742999999799999999999999999986
No 6
>2crf_A RAN binding protein 3; RAN_BP1 domain, ranbp3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.3
Probab=1.00 E-value=1 Score=226.94 Aligned_cols=122 Identities=32% Similarity=0.475 Sum_probs=109.0
Q ss_pred CEEEECEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEEC----CCCEEEEEEEECCCCEEEEEEEEC
Q ss_conf 2136500135541676611599963269987058999625434999998728----999399999827940068522332
Q 030641 27 APIVKLEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHK----VTGKVRLVMRQSKTLKICANHLVL 102 (174)
Q Consensus 27 ~p~v~L~~v~~~tGEE~E~~lf~~raKLy~~~~e~~~WkerG~G~LkI~k~~----~t~~~RIvmR~d~~~kvlLN~~I~ 102 (174)
.|+..|++|++.+|||+|+++|++|||||+|+++.++|+|||+|+||||+++ .++++|||||++++++|||||+|+
T Consensus 9 ~~~~~l~~vev~tGEE~E~~l~~~raKL~~fd~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~ 88 (150)
T 2crf_A 9 ARKCLLEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLW 88 (150)
T ss_dssp SCCSCSSCTTTSCCCCCCEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECSSSCSEEEEEEEEESSSCCEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEECCCCEEEEEEECC
T ss_conf 65267654033578767089999876899982788885002167799976046678874089999972765698611506
Q ss_pred CCCEEEECCCCCEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHCHHH
Q ss_conf 88445541799705999830059998113699999099888877460541
Q 030641 103 PMMSVQEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFIDS 152 (174)
Q Consensus 103 ~~m~~~~~~~~~k~~~~~~~d~~dg~~k~~~~lirfks~e~A~eF~~~~~ 152 (174)
++|++.+ .++++++|++.|++++ .+++|+|||++++.|+.|..+..
T Consensus 89 ~~m~~~~--~~~k~~~~~~~d~~d~--~~~~~lirfk~~e~a~lf~~~~e 134 (150)
T 2crf_A 89 AQMQIDK--ASEKSIHITAMDTEDQ--GVKVFLISASSKDTGQLYAALHH 134 (150)
T ss_dssp TTCCEEC--CSSSEEEEEEEBSSSC--CEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCEEEC--CCCCEEEEEEECCCCC--CEEEEEEEECCHHHHHHHHHHHH
T ss_conf 7865631--8998899996548898--52899999799999999999999
No 7
>2y8g_A Ranbp3-B, RAN-binding protein 3; protein transport, CRM1-mediated nuclear export; 1.61A {Homo sapiens} PDB: 2y8f_A
Probab=1.00 E-value=1 Score=226.62 Aligned_cols=116 Identities=29% Similarity=0.450 Sum_probs=105.7
Q ss_pred CEEEEEECCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECC----CCEEEEEEEECCCCEEEEEEEECCCCEE
Q ss_conf 001355416766115999632699870589996254349999987289----9939999982794006852233288445
Q 030641 32 LEEVAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKV----TGKVRLVMRQSKTLKICANHLVLPMMSV 107 (174)
Q Consensus 32 L~~v~~~tGEE~E~~lf~~raKLy~~~~e~~~WkerG~G~LkI~k~~~----t~~~RIvmR~d~~~kvlLN~~I~~~m~~ 107 (174)
|++|++.+|||+|+++|++|||||+|++++++|++||+|+|||++|+. ++++|||||++++++|||||+|+|+|++
T Consensus 2 l~~v~v~tGEE~E~~~~~~raKL~~f~~~~~~WkERG~G~lkil~~k~~~~~t~k~RlvmR~d~~~kv~lN~~i~~~m~~ 81 (138)
T 2y8g_A 2 AMKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVAVGRGLLRLNDMASTDDGTLQSRLVMRTQGSLRLILNTKLWAQMQI 81 (138)
T ss_dssp ------------CEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEECTTTCCEEEEEEEEETTTCCEEEEEECCTTCCE
T ss_pred CCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCHHCEEEEEEEEEECCCCCCCCCEEEEEEECCCCEEEEEEEECCCCEE
T ss_conf 97332547876717999997679999268898412417889998714677778528999997686569982381679646
Q ss_pred EECCCCCEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHCHH
Q ss_conf 54179970599983005999811369999909988887746054
Q 030641 108 QEHAGNDKSCVWHAADYADGELKDELFCIRFGSVESEYFFSFID 151 (174)
Q Consensus 108 ~~~~~~~k~~~~~~~d~~dg~~k~~~~lirfks~e~A~eF~~~~ 151 (174)
.+. ++++++|++.|++++ .+.+|+|||++++.|+.|..+.
T Consensus 82 ~~~--~~k~~~~~~~d~~d~--~~~~~lirfk~~e~a~lf~~~~ 121 (138)
T 2y8g_A 82 DKA--SEKSIRITAMDTEDQ--GVKVFLISASSKDTGQLYAALH 121 (138)
T ss_dssp EEE--ETTEEEEECCC--CC--CCCEEEEECCHHHHHHHHHHHH
T ss_pred ECC--CCCEEEEEEECCCCC--CEEEEEEEECCHHHHHHHHHHH
T ss_conf 308--998799997637899--5389999989999999999999
No 8
>3n7c_A ABR034WP; nuclear pore complex, NUP2, RAN-binding domain, nucleoporin, structural genomics, PSI-2, protein structure initiative; 2.26A {Ashbya gossypii} PDB: 3oan_A
Probab=1.00 E-value=1 Score=223.55 Aligned_cols=119 Identities=29% Similarity=0.393 Sum_probs=105.3
Q ss_pred EEEECCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECC-CCEEEEEEEECCCCEEEEEEEECCCCEEEECCCC
Q ss_conf 355416766115999632699870589996254349999987289-9939999982794006852233288445541799
Q 030641 35 VAVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKV-TGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGN 113 (174)
Q Consensus 35 v~~~tGEE~E~~lf~~raKLy~~~~e~~~WkerG~G~LkI~k~~~-t~~~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~ 113 (174)
|+++||||+|+++|++|||||+|+++.++|++||+|+||||++++ ++++|||||++++++|+||++|+|+|+++++.++
T Consensus 1 iev~tGEE~E~~lf~~raKL~~f~~~~~~WkerG~G~lkil~~k~~~~k~RllmR~d~~~kv~lN~~i~~~m~~~~~~~~ 80 (130)
T 3n7c_A 1 MSLTNGEENEEVLFCEKAKLLIFDSDTKGYTSRGVGELKLLRKKDDKGKVRVLCRSEGMGHVLLNTSVVKSFKYQPIDAD 80 (130)
T ss_dssp ---------CEEEEEEEEEEEEECC---CEEEEEEEEEEEEEETTEEEEEEEEEEC-CCCCEEEEEECCTTBCCEESCTT
T ss_pred CCCCCCCCCEEEEEEEEEEEEEEECCCCCCHHCCEEEEEEEEECCCCCEEEEEEEECCCCEEEEECCCCCCCEEEECCCC
T ss_conf 96657874703899988799999378898401455889999946889889999993677507761111378588676899
Q ss_pred CEEEEEEEEECCCCCCEEEEEEEEECCHHHHHHHHC-H-HHHCCC
Q ss_conf 705999830059998113699999099888877460-5-410102
Q 030641 114 DKSCVWHAADYADGELKDELFCIRFGSVESEYFFSF-I-DSSKLN 156 (174)
Q Consensus 114 ~k~~~~~~~d~~dg~~k~~~~lirfks~e~A~eF~~-~-~~~k~n 156 (174)
+++++|.+.. +|| ++++|++||+++++|++|.. + ++++.+
T Consensus 81 ~~~~v~~~~~-~dg--k~~~~~lrfks~e~A~~f~~~iee~~~~~ 122 (130)
T 3n7c_A 81 NENLIKWPII-TDG--KLETFIIKVKQKADGRRLVGAVADAQQAM 122 (130)
T ss_dssp CTTEEEEEEE-ETT--EEEEEEEECSSHHHHHHHHHHHHHHHHHC
T ss_pred CCCEEEEEEC-CCC--CEEEEEEEECCHHHHHHHHHHHHHHHHHH
T ss_conf 8519999735-899--42999999899999999999999998660
No 9
>2ec1_A Nucleoporin 50 kDa; ranbp domain, nuclear pore-associated protein 60 kDa-like, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=205.61 Aligned_cols=110 Identities=25% Similarity=0.311 Sum_probs=97.0
Q ss_pred EEECCCCCCEEEEEEEEEEEEECCCCCCCEEEEEEEEEEEEECCCCEEEEEEEECCC-CEEEEEEEECCCCEEEECCCCC
Q ss_conf 554167661159996326998705899962543499999872899939999982794-0068522332884455417997
Q 030641 36 AVTTGEEDEDAILDLKAKLYRFDKDGNQWKERGAGTVKLLKHKVTGKVRLVMRQSKT-LKICANHLVLPMMSVQEHAGND 114 (174)
Q Consensus 36 ~~~tGEE~E~~lf~~raKLy~~~~e~~~WkerG~G~LkI~k~~~t~~~RIvmR~d~~-~kvlLN~~I~~~m~~~~~~~~~ 114 (174)
...||||+|+++|+.|||||+|+. ++|+|||+|+|||++++ ++++|||||+|++ ++|||||+|+++|+++++ +++
T Consensus 4 ~~~tgEE~E~~lf~~raKLf~~~~--~~WkERGvG~lki~~~k-~~k~RllmR~d~~~~kv~lN~~i~~~m~~~~~-g~~ 79 (125)
T 2ec1_A 4 GSSGEVKEEDAFYSKKCKLFYKKD--NEFKEKGIGTLHLKPTA-NQKTQLLVRADTNLGNILLNVLIPPNMPCTRT-GKN 79 (125)
T ss_dssp ----CCCCCSCSEEEEEEEEEECS--SSEEEEEEEEEEEEECS-SSSEEEEEEESSSSCCBSCCEECCSSCCEECC-TTT
T ss_pred CCCCCCCCCEEEEEEEEEEEEECC--CCCCCCCEEEEEEEECC-CCCEEEEEEECCCCCEEEEEEEECCCCEEEEC-CCC
T ss_conf 976886174258988668999659--98234607889966669-98389999925878779992587589737866-998
Q ss_pred EEEEEEEEEC--CCCC--CEEEEEEEEECCHHHHHHHHCH
Q ss_conf 0599983005--9998--1136999990998888774605
Q 030641 115 KSCVWHAADY--ADGE--LKDELFCIRFGSVESEYFFSFI 150 (174)
Q Consensus 115 k~~~~~~~d~--~dg~--~k~~~~lirfks~e~A~eF~~~ 150 (174)
+.++|+ .++ +|+. +++++|+|||+++++|++|+..
T Consensus 80 ~~~~~~-~~~~~~d~~~~~~~~~~~lrfk~~e~a~~f~~~ 118 (125)
T 2ec1_A 80 NVLIVC-VPNPPIDEKNATMPVTMLIRVKTSEDADELHKI 118 (125)
T ss_dssp EEEEEE-CCSSCSCSSSSSSCEEEEEECSSHHHHHHHHHH
T ss_pred CEEEEE-CCCCCCCCCCCCCEEEEEEEECCHHHHHHHHHH
T ss_conf 199998-568765678877138999997999999999999
No 10
>1qc6_A EVH1 domain from ENA/VAsp-like protein; AN incomplete seven stranded anti-parallel beta barrel closed by AN alpha helix, EVH1 domain; 2.60A {Mus musculus} SCOP: b.55.1.4
Probab=1.00 E-value=1 Score=97.47 Aligned_cols=98 Identities=16% Similarity=0.344 Sum_probs=85.8
Q ss_pred CCEEEEEEEEEEEEECCCCCCCEEEEEE-----EEEEEEECCCCEEEEEEEECCCCEEEEEEEECCCCEEEECCCCCEEE
Q ss_conf 6115999632699870589996254349-----99998728999399999827940068522332884455417997059
Q 030641 43 DEDAILDLKAKLYRFDKDGNQWKERGAG-----TVKLLKHKVTGKVRLVMRQSKTLKICANHLVLPMMSVQEHAGNDKSC 117 (174)
Q Consensus 43 ~E~~lf~~raKLy~~~~e~~~WkerG~G-----~LkI~k~~~t~~~RIvmR~d~~~kvlLN~~I~~~m~~~~~~~~~k~~ 117 (174)
.|++|++++|+||.++++.+.|..+|.| .++|+++..+..+||++|+.+..++++|+.|+++|.+.+. +++..
T Consensus 2 ~E~~i~~~~A~V~~~d~~~~~W~~~g~G~~~l~~V~i~~~~~~~~~Riv~~~~~~~~vi~n~~i~~~~~y~~~--~~~Fh 79 (130)
T 1qc6_A 2 SEQSICQARASVMVYDDTSKKWVPIKPGQQGFSRINIYHNTASSTFRVVGVKLQDQQVVINYSIVKGLKYNQA--TPTFH 79 (130)
T ss_dssp CCEEEEEEEEEEEEEETTTTEEEECC-----CEEEEEEEETTTTEEEEEEECTTTCCEEEEEECCTTCEEEEE--ETTEE
T ss_pred CCEEEEEEEEEEEEECCCCCCEEECCCCCEEEEEEEEEECCCCCEEEEEEEECCCCEEEEEEEEECCCEEECC--CCEEE
T ss_conf 8514899999999887999956587998403568889856998599999985799859995688089589016--88058
Q ss_pred EEEEEECCCCCCEEEEEEEEECCHHHHHHHHCH
Q ss_conf 998300599981136999990998888774605
Q 030641 118 VWHAADYADGELKDELFCIRFGSVESEYFFSFI 150 (174)
Q Consensus 118 ~~~~~d~~dg~~k~~~~lirfks~e~A~eF~~~ 150 (174)
.|. ++. ..|-+.|.++++|..|...
T Consensus 80 ~w~-----~~~---~~~GL~F~se~eA~~F~~~ 104 (130)
T 1qc6_A 80 QWR-----DAR---QVYGLNFASKEEATTFSNA 104 (130)
T ss_dssp EEE-----CSS---CEEEEEESCHHHHHHHHHH
T ss_pred EEE-----CCC---EEEEEECCCHHHHHHHHHH
T ss_conf 997-----387---8999953998999999999
Done!