BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030642
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HBD|A Chain A, Class Iv Chitinase Structure From Picea Abies At 1.8a
pdb|3HBE|X Chain X, Class Iv Chitinase Structure From Picea Abies At 1.55a
pdb|3HBH|A Chain A, Class Iv Chitinase Structure From Picea Abies At 2.25a
Length = 204
Score = 154 bits (389), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 76/143 (53%), Positives = 99/143 (69%), Gaps = 5/143 (3%)
Query: 36 SVTDLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDTN----REVAAFF 91
SV +++ FF+G+ A ++CEGKGFYT +AFI A N+Y FG T +N RE+AAFF
Sbjct: 1 SVGGIISQSFFNGLAGGAASSCEGKGFYTYNAFIAAANAYSGFGTTGSNDVKKRELAAFF 60
Query: 92 AHVTHETTDFCYIEEKNKADPHC-TSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGF 150
A+V HET CYI EKN +C +S +PC +GK Y+GRGP+QL+ N NY AG++IGF
Sbjct: 61 ANVMHETGGLCYINEKNPPINYCQSSSTWPCTSGKSYHGRGPLQLSWNYNYGAAGKSIGF 120
Query: 151 DGLNSPETVARDRVISFKTLCGF 173
DGLN+PE V +D ISFKT F
Sbjct: 121 DGLNNPEKVGQDSTISFKTAVWF 143
>pdb|1DXJ|A Chain A, Structure Of The Chitinase From Jack Bean
Length = 242
Score = 128 bits (321), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 74/155 (47%), Positives = 97/155 (62%), Gaps = 19/155 (12%)
Query: 37 VTDLVTPEFFDGI-KNQAPATCEGKGFYTRDAFITALNSYPEFGRT-DTN---REVAAFF 91
V ++ FD + K++ CEGKGFY+ +AF+TA S+ FG T DTN REVAAF
Sbjct: 2 VGSVIDASLFDQLLKHRNDPACEGKGFYSYNAFVTAARSFGGFGTTGDTNTRKREVAAFL 61
Query: 92 AHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGN 138
A +HETT +C++ E++K++ +C P PC GK YYGRGPIQLT N
Sbjct: 62 AQTSHETTGGAAGSPDGPYAWGYCFVTERDKSNKYC-DPGTPCPAGKSYYGRGPIQLTHN 120
Query: 139 GNYIEAGRAIGFDGLNSPETVARDRVISFKTLCGF 173
NY +AGRA+G D +N+P+ VARD VISFKT F
Sbjct: 121 YNYAQAGRALGVDLINNPDLVARDAVISFKTAIWF 155
>pdb|3W3E|A Chain A, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
pdb|3W3E|B Chain B, Structure Of Vigna Unguiculata Chitinase With Regulation
Activity Of The Plant Cell Wall
Length = 242
Score = 125 bits (313), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 72/155 (46%), Positives = 96/155 (61%), Gaps = 19/155 (12%)
Query: 37 VTDLVTPEFFDGI-KNQAPATCEGKGFYTRDAFITALNSYPEFGRT-DTN---REVAAFF 91
V ++ FD + K++ CEGKGFY+ +AFITA S+ FG T D+N REVAAF
Sbjct: 3 VGSVIGASLFDQLLKHRNDQACEGKGFYSYNAFITAARSFAAFGTTGDSNTRKREVAAFL 62
Query: 92 AHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGN 138
A +HETT +C++ E++K++ +C PC+ GK YYGRGPIQLT N
Sbjct: 63 AQTSHETTGGAATSPDGPYAWGYCFVTERDKSNRYCDGSG-PCSAGKSYYGRGPIQLTHN 121
Query: 139 GNYIEAGRAIGFDGLNSPETVARDRVISFKTLCGF 173
NY AGRA+G D +N+P+ VARD V+SFKT F
Sbjct: 122 YNYNAAGRALGVDLINNPDLVARDAVVSFKTALWF 156
>pdb|4DWX|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DWX|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds
pdb|4DYG|A Chain A, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
pdb|4DYG|B Chain B, Crystal Structure Of A Family Gh-19 Chitinase From Rye
Seeds In Complex With (Glcnac)4
Length = 244
Score = 122 bits (307), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 70/157 (44%), Positives = 94/157 (59%), Gaps = 19/157 (12%)
Query: 36 SVTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----NREVAAF 90
SV+ +++ FD + ++ C+ KGFYT DAF+ A N++P FG T + R+VAAF
Sbjct: 2 SVSSIISHAQFDRMLLHRNDGACQAKGFYTYDAFVAAANAFPGFGATGSTDARKRDVAAF 61
Query: 91 FAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLT 136
A +HETT +C+ +E+ A +CT S Q+PCA GK YYGRGPIQL+
Sbjct: 62 LAQTSHETTGGWATAPDGAFAWGYCFKQERGAAADYCTPSAQWPCAPGKRYYGRGPIQLS 121
Query: 137 GNGNYIEAGRAIGFDGLNSPETVARDRVISFKTLCGF 173
N NY AGRAIG D L +P+ VA D +SFKT F
Sbjct: 122 HNYNYGPAGRAIGVDLLRNPDLVATDPTVSFKTALWF 158
>pdb|3CQL|A Chain A, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
pdb|3CQL|B Chain B, Crystal Structure Of Gh Family 19 Chitinase From Carica
Papaya
Length = 243
Score = 120 bits (300), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 67/156 (42%), Positives = 91/156 (58%), Gaps = 19/156 (12%)
Query: 37 VTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----NREVAAFF 91
+ +++ FD +K++ C KGFYT DAFI A S+P FG T + RE+AAF
Sbjct: 2 IEKIISRSMFDQMLKHRNNPACPAKGFYTYDAFIAAAKSFPSFGTTGSTDVRKREIAAFL 61
Query: 92 AHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTG 137
+HETT +C+++E+N + +C SP+YPCA GK YYGRGPIQL+
Sbjct: 62 GQTSHETTGGWPSAPDGPYAWGYCFLKERNPSSNYCAPSPRYPCAPGKSYYGRGPIQLSW 121
Query: 138 NGNYIEAGRAIGFDGLNSPETVARDRVISFKTLCGF 173
N NY G A+ + L +P+ VA DRVISFKT F
Sbjct: 122 NYNYGPCGEALRVNLLGNPDLVATDRVISFKTALWF 157
>pdb|2Z37|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|C Chain C, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
pdb|2Z37|D Chain D, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module (Bjchi3)
Length = 244
Score = 119 bits (299), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 86/149 (57%), Gaps = 19/149 (12%)
Query: 44 EFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----NREVAAFFAHVTHETT 99
+F+ +K+ C GF+T DAFITA S+P FG T +E+AAFF +HETT
Sbjct: 10 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETT 69
Query: 100 D-------------FCYIEEKNKADPHCTS--PQYPCANGKFYYGRGPIQLTGNGNYIEA 144
+CY EE +K+DPHC S ++PCA GKFYYGRGP+ L+ N NY
Sbjct: 70 GGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPC 129
Query: 145 GRAIGFDGLNSPETVARDRVISFKTLCGF 173
GR +G + L +P+ + D VI+FKT F
Sbjct: 130 GRDLGLELLKNPDVASSDPVIAFKTAIWF 158
>pdb|2Z38|A Chain A, Crystal Structure Of Chloride Bound Brassica Juncea
Chitinase Catalytic Module (Bjchi3)
Length = 247
Score = 119 bits (298), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 64/149 (42%), Positives = 86/149 (57%), Gaps = 19/149 (12%)
Query: 44 EFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----NREVAAFFAHVTHETT 99
+F+ +K+ C GF+T DAFITA S+P FG T +E+AAFF +HETT
Sbjct: 13 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETT 72
Query: 100 D-------------FCYIEEKNKADPHCTS--PQYPCANGKFYYGRGPIQLTGNGNYIEA 144
+CY EE +K+DPHC S ++PCA GKFYYGRGP+ L+ N NY
Sbjct: 73 GGWSGAPDGANTWGYCYKEEIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPC 132
Query: 145 GRAIGFDGLNSPETVARDRVISFKTLCGF 173
GR +G + L +P+ + D VI+FKT F
Sbjct: 133 GRDLGLELLKNPDVASSDPVIAFKTAIWF 161
>pdb|2Z39|A Chain A, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
pdb|2Z39|B Chain B, Crystal Structure Of Brassica Juncea Chitinase Catalytic
Module Glu234ala Mutant (bjchi3-e234a)
Length = 246
Score = 117 bits (293), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 85/149 (57%), Gaps = 19/149 (12%)
Query: 44 EFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----NREVAAFFAHVTHETT 99
+F+ +K+ C GF+T DAFITA S+P FG T +E+AAFF +HETT
Sbjct: 12 QFYKMLKHMNDNDCHAVGFFTYDAFITAAKSFPSFGNTGDLAMRKKEIAAFFGQTSHETT 71
Query: 100 D-------------FCYIEEKNKADPHCTS--PQYPCANGKFYYGRGPIQLTGNGNYIEA 144
+CY E +K+DPHC S ++PCA GKFYYGRGP+ L+ N NY
Sbjct: 72 GGWSGAPDGANTWGYCYKEAIDKSDPHCDSNNLEWPCAPGKFYYGRGPMMLSWNYNYGPC 131
Query: 145 GRAIGFDGLNSPETVARDRVISFKTLCGF 173
GR +G + L +P+ + D VI+FKT F
Sbjct: 132 GRDLGLELLKNPDVASSDPVIAFKTAIWF 160
>pdb|2BAA|A Chain A, The Refined Crystal Structure Of An Endochitinase From
Hordeum Vulgare L. Seeds To 1.8 Angstroms Resolution
Length = 243
Score = 109 bits (272), Expect = 8e-25, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 92/157 (58%), Gaps = 19/157 (12%)
Query: 36 SVTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----NREVAAF 90
SV+ +V+ FD + ++ C+ KGFYT DAF+ A ++P FG T + REVAAF
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFPGFGTTGSADAQKREVAAF 60
Query: 91 FAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLT 136
A +HETT +C+ +E+ + +CT S Q+PCA GK YYGRGPIQL+
Sbjct: 61 LAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLS 120
Query: 137 GNGNYIEAGRAIGFDGLNSPETVARDRVISFKTLCGF 173
N NY AGRAIG D L +P+ VA D + FKT F
Sbjct: 121 HNYNYGPAGRAIGVDLLANPDLVATDATVGFKTAIWF 157
>pdb|1CNS|A Chain A, Crystal Structure Of Chitinase At 1.91a Resolution
pdb|1CNS|B Chain B, Crystal Structure Of Chitinase At 1.91a Resolution
Length = 243
Score = 108 bits (269), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 69/157 (43%), Positives = 92/157 (58%), Gaps = 19/157 (12%)
Query: 36 SVTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----NREVAAF 90
SV+ +V+ FD + ++ C+ KGFYT DAF+ A ++ FG T + REVAAF
Sbjct: 1 SVSSIVSRAQFDRMLLHRNDGACQAKGFYTYDAFVAAAAAFSGFGTTGSADVQKREVAAF 60
Query: 91 FAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLT 136
A +HETT +C+ +E+ + +CT S Q+PCA GK YYGRGPIQL+
Sbjct: 61 LAQTSHETTGGWATAPDGAFAWGYCFKQERGASSDYCTPSAQWPCAPGKRYYGRGPIQLS 120
Query: 137 GNGNYIEAGRAIGFDGLNSPETVARDRVISFKTLCGF 173
N NY AGRAIG D L +P+ VA D +SFKT F
Sbjct: 121 HNYNYGPAGRAIGVDLLANPDLVATDATVSFKTAMWF 157
>pdb|2DKV|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|A Chain A, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
pdb|3IWR|B Chain B, Crystal Structure Of Class I Chitinase From Oryza Sativa
L. Japonica
Length = 309
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/158 (40%), Positives = 90/158 (56%), Gaps = 19/158 (12%)
Query: 35 NSVTDLVTPEFFDGIK-NQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----NREVAA 89
+ V +V + F+ + ++ C +GFYT +AF+ A ++P FG T REVAA
Sbjct: 56 DGVGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAA 115
Query: 90 FFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQL 135
F +HETT +C+ +E+N +C SP++PCA G+ YYGRGPIQL
Sbjct: 116 FLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQL 175
Query: 136 TGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTLCGF 173
+ N NY AGRAIG D L++P+ VA D +SFKT F
Sbjct: 176 SFNFNYGPAGRAIGVDLLSNPDLVATDATVSFKTALWF 213
>pdb|2CJL|A Chain A, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
pdb|2CJL|B Chain B, Crystal Structure And Enzymatic Properties Of A Bacterial
Family 19 Chitinase Reveal Differences With Plant
Enzymes
Length = 204
Score = 90.1 bits (222), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 70/116 (60%), Gaps = 8/116 (6%)
Query: 62 FYTRDAFITALNSYPEFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKAD-PH-CT 115
FYT AL++YP F T ++ +E AAF A+V HET Y+ E+N A+ PH C
Sbjct: 18 FYTYSGLTAALSAYPGFSNTGSDTVKKQEAAAFLANVGHETGGLVYVVEQNTANYPHYCD 77
Query: 116 SPQ-YPCANGK-FYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKT 169
+ Q Y C G YYGRGP+QL+ N NY AG A+G D LN+P+ V D +++KT
Sbjct: 78 ASQPYGCPAGNDKYYGRGPVQLSWNFNYKAAGDALGIDLLNNPDLVQNDSAVAWKT 133
>pdb|1WVU|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|1WVU|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|A Chain A, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|B Chain B, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
pdb|2DBT|C Chain C, Crystal Structure Of Chitinase C From Streptomyces Griseus
Hut6037
Length = 265
Score = 89.7 bits (221), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 53/116 (45%), Positives = 73/116 (62%), Gaps = 8/116 (6%)
Query: 62 FYTRDAFITALNSYPEFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKAD-PH-C- 114
FYT AL++YP F +T ++ RE AAF A+V+HET YI+E N+A+ PH C
Sbjct: 79 FYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHETGGLFYIKEVNEANYPHYCD 138
Query: 115 TSPQYPCANGKF-YYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKT 169
T+ Y C G+ YYGRGPIQL+ N NY AG A+G + L +P V +D +++KT
Sbjct: 139 TTQSYGCPAGQAAYYGRGPIQLSWNFNYKAAGDALGINLLANPYLVEQDPAVAWKT 194
>pdb|1WVV|A Chain A, Crystal Structure Of Chitinase C Mutant E147q
pdb|1WVV|B Chain B, Crystal Structure Of Chitinase C Mutant E147q
Length = 265
Score = 88.6 bits (218), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 73/116 (62%), Gaps = 8/116 (6%)
Query: 62 FYTRDAFITALNSYPEFGRTDTN----REVAAFFAHVTHETTDFCYIEEKNKAD-PH-C- 114
FYT AL++YP F +T ++ RE AAF A+V+H+T YI+E N+A+ PH C
Sbjct: 79 FYTYKGLTDALSAYPAFAKTGSDEVKKREAAAFLANVSHQTGGLFYIKEVNEANYPHYCD 138
Query: 115 TSPQYPCANGKF-YYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKT 169
T+ Y C G+ YYGRGPIQL+ N NY AG A+G + L +P V +D +++KT
Sbjct: 139 TTQSYGCPAGQAAYYGRGPIQLSWNFNYKAAGDALGINLLANPYLVEQDPAVAWKT 194
>pdb|4DEJ|A Chain A, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|B Chain B, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|C Chain C, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|D Chain D, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|E Chain E, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|F Chain F, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|G Chain G, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|H Chain H, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|I Chain I, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|J Chain J, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|K Chain K, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
pdb|4DEJ|L Chain L, Crystal Structure Of Glutathione Transferase-Like Protein
Il0419 (Target Efi-501089) From Idiomarina Loihiensis
L2tr
Length = 231
Score = 29.3 bits (64), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 7/56 (12%)
Query: 69 ITALNSYPEFGRTDTNREVAAFFAHVTHETTDFCYIEEKNKADPHCTSPQYPCANG 124
+ LN YPE T +RE+ + A + E Y++E+ P P YP A G
Sbjct: 52 LLQLNPYPEAKPTLVDRELVLYNAQIIME-----YLDERFPHPPLM--PVYPVARG 100
>pdb|4FNV|A Chain A, Crystal Structure Of Heparinase Iii
Length = 702
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 39 DLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDTN 84
D+V P+ F+ I P + K FY A N+ E+ RT TN
Sbjct: 43 DVVDPQVFEAINLNYPGLEKVKEFYEAGEHYYAANALLEYYRTRTN 88
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 27.3 bits (59), Expect = 4.2, Method: Composition-based stats.
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 5/50 (10%)
Query: 113 HCTSPQYPCANGKFYYG-----RGPIQLTGNGNYIEAGRAIGFDGLNSPE 157
HC +P GK++ G I L G + G + +G+N+PE
Sbjct: 165 HCAPVTWPIGXGKYFKGIYHLIEDAIYLYQPGKHERVGESERIEGINNPE 214
>pdb|3RVA|A Chain A, Crystal Structure Of Organophosphorus Acid Anhydrolase
From Alteromonas Macleodii
Length = 451
Score = 26.9 bits (58), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 6/29 (20%)
Query: 139 GNYIEAGRAIGFDGLNSPETVARDRVISF 167
G YIE +A+GFD +N DRV+ +
Sbjct: 130 GEYIEVAKALGFDNVNP------DRVLHY 152
>pdb|2A9V|A Chain A, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|B Chain B, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|C Chain C, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
pdb|2A9V|D Chain D, Crystal Structure Of A Putative Gmp Synthase Subunit A
Protein (Ta0944m) From Thermoplasma Acidophilum At 2.45
A Resolution
Length = 212
Score = 26.6 bits (57), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 53 APATCEGKGFYTRDAFITALNSYPEFGRTDTNREV 87
+ ATC+ +GFY + I A +PE T R++
Sbjct: 157 SSATCQVQGFYHKTRPIYATQFHPEVEHTQYGRDI 191
>pdb|4E1F|A Chain A, Structure Of A Vgrg Vibrio Cholerae Toxin Acd Domain
Glu16gln Mutant In Complex With Adp And Mn++
Length = 396
Score = 26.2 bits (56), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 40 LVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYP----EFGRTDTNREVAAFFAHVT 95
++T + G + P+ +GK + L SYP + +T ++ + A T
Sbjct: 59 MLTKDMNQGSYQRPPSLQDGKNYQNWQTHTVELVSYPCEMDDKAAVETRKQAMLWLA--T 116
Query: 96 HETTDFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDG 152
H TT +I++ N P A + GR I++T + I AG I +
Sbjct: 117 HFTT---HIDQSN---------HQPLAPIQSEDGRFVIEITNAKHVIAAGNGISAES 161
>pdb|4DTF|A Chain A, Structure Of A Vgrg Vibrio Cholerae Toxin Acd Domain In
Complex With Amp-Pnp And Mg++
pdb|4DTH|A Chain A, Structure Of A Vgrg Vibrio Cholerae Toxin Acd Domain In
Complex With Atp And Mg++
pdb|4E1C|A Chain A, Structure Of A Vgrg Vibrio Cholerae Toxin Acd Domain In
Complex With Adp And Mg++
pdb|4E1D|A Chain A, Structure Of A Vgrg Vibrio Cholerae Toxin Acd Domain In
Complex With Adp And Mn++
Length = 396
Score = 26.2 bits (56), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 18/117 (15%)
Query: 40 LVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYP----EFGRTDTNREVAAFFAHVT 95
++T + G + P+ +GK + L SYP + +T ++ + A T
Sbjct: 59 MLTKDMNQGSYQRPPSLQDGKNYQNWQTHTVELVSYPCEMDDKAAVETRKQAMLWLA--T 116
Query: 96 HETTDFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDG 152
H TT +I++ N P A + GR I++T + I AG I +
Sbjct: 117 HFTT---HIDQSN---------HQPLAPIQSEDGRFVIEITNAKHVIAAGNGISAES 161
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.433
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,322,741
Number of Sequences: 62578
Number of extensions: 225263
Number of successful extensions: 550
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 503
Number of HSP's gapped (non-prelim): 22
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)