Query 030642
Match_columns 174
No_of_seqs 184 out of 877
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 16:50:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030642.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030642hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00182 Glyco_hydro_19: Chiti 100.0 2.7E-47 6E-52 319.8 8.3 134 40-173 1-153 (232)
2 cd00325 chitinase_glyco_hydro_ 100.0 4.2E-46 9.2E-51 312.2 10.9 133 41-173 1-151 (230)
3 KOG4742 Predicted chitinase [G 100.0 3.5E-42 7.5E-47 294.2 9.5 139 35-173 60-220 (286)
4 COG3179 Predicted chitinase [G 100.0 2.1E-31 4.6E-36 216.4 7.1 125 39-173 2-161 (206)
5 cd00442 lysozyme_like lysozyme 99.4 3.4E-14 7.4E-19 105.0 1.4 77 88-173 1-77 (105)
6 PF09447 Cnl2_NKP2: Cnl2/NKP2 49.0 17 0.00036 25.3 2.3 19 35-53 14-32 (67)
7 PF11127 DUF2892: Protein of u 46.3 26 0.00057 23.3 3.0 27 3-29 2-28 (66)
8 PF12451 VPS11_C: Vacuolar pro 38.2 13 0.00029 24.0 0.5 17 90-106 24-40 (49)
9 PF13623 SurA_N_2: SurA N-term 37.1 37 0.00081 26.6 3.0 86 5-91 3-115 (145)
10 cd08327 CARD_RAIDD Caspase act 27.2 47 0.001 24.3 1.9 38 39-76 34-80 (94)
11 KOG3866 DNA-binding protein of 26.6 67 0.0014 29.2 3.1 60 12-73 3-62 (442)
12 KOG3109 Haloacid dehalogenase- 23.1 38 0.00083 29.1 0.8 25 4-28 97-124 (244)
13 PRK01617 hypothetical protein; 20.0 52 0.0011 26.2 1.0 32 94-128 110-149 (154)
No 1
>PF00182 Glyco_hydro_19: Chitinase class I; InterPro: IPR000726 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 19 GH19 from CAZY comprises enzymes with only one known activity; chitinase (3.2.1.14 from EC). Chitinases [] are enzymes that catalyse the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Chitinases belong to glycoside hydrolase families 18 or 19 []. Chitinases of family 19 (also known as classes IA or I and IB or II) are enzymes from plants that function in the defence against fungal and insect pathogens by destroying their chitin-containing cell wall. Class IA/I and IB/II enzymes differ in the presence (IA/I) or absence (IB/II) of a N-terminal chitin-binding domain. The catalytic domain of these enzymes consist of about 220 to 230 amino acid residues.; GO: 0004568 chitinase activity, 0006032 chitin catabolic process, 0016998 cell wall macromolecule catabolic process; PDB: 3IWR_A 2DKV_A 3CQL_A 2Z38_A 2Z37_D 2Z39_B 1DXJ_A 1WVU_B 1WVV_B 2DBT_C ....
Probab=100.00 E-value=2.7e-47 Score=319.83 Aligned_cols=134 Identities=51% Similarity=0.862 Sum_probs=114.8
Q ss_pred CCCHHHHHHhhhcCC-CCCcCCCcccHHHHHHHhhcCCccCCC----CCHHHHHHHhhhhcccCCCceeccccCCC----
Q 030642 40 LVTPEFFDGIKNQAP-ATCEGKGFYTRDAFITALNSYPEFGRT----DTNREVAAFFAHVTHETTDFCYIEEKNKA---- 110 (174)
Q Consensus 40 iiT~~~f~~i~~~~~-~~~~~~~fyty~~fi~aln~~~~fgi~----~t~~~lA~FlAq~~hETggf~~~~E~~~~---- 110 (174)
|||+++|++|||+++ ..|++++||||++||+|+++||+|+.+ +++|||||||||++|||+++++++|....
T Consensus 1 ivt~~~F~~~~~~~n~~~c~~~~FYTY~~Fi~Aa~~fp~F~~tG~~~~~krElAAFLA~~~hET~g~~~~~e~~~~~~gy 80 (232)
T PF00182_consen 1 IVTESFFNQMFPHRNDNGCPGKGFYTYDAFIAAAKSFPAFGNTGDDEDRKRELAAFLAQVSHETGGFWYIEEIGPYAWGY 80 (232)
T ss_dssp TS-HHHHHHHTTTTTSTTSTTTTTS-HHHHHHHHTTSTTTTTSSSHHHHHHHHHHHHHHHHHHTTTTTTTBTTSGGGGTT
T ss_pred CCCHHHHHHHHhcCCccCCCCCCcccHHHHHHHhhcCchhccCccHHHHHHHHHhhhcccchhccccccccccccccccc
Confidence 799999999999996 689999999999999999999999987 68999999999999999999998887532
Q ss_pred ---------CCCCC-CCCCCCCCCCccccCcccccccchhHHHHHHHhCCCCCCChhhhhcChHHHHHhhccC
Q 030642 111 ---------DPHCT-SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTLCGF 173 (174)
Q Consensus 111 ---------~~Y~~-n~~~~~gdG~~Y~GRG~iQLTg~~NY~~~~~~lg~dl~~nPdlva~dp~~A~~sA~WF 173 (174)
..||. ++++||+||++|||||+||||||+||+++++++|.||++|||+|++||.+||++|+||
T Consensus 81 c~~~e~~~~~~y~~~~~~~p~~~g~~Y~GRG~iQLT~~~NY~~~g~~lg~dl~~nP~lv~~d~~~a~~sA~wf 153 (232)
T PF00182_consen 81 CYKREKGANSDYCNRNGNYPCGDGKKYYGRGPIQLTWNYNYGAFGEALGLDLLNNPDLVATDPWLAFKSAIWF 153 (232)
T ss_dssp S-SB-SS-SSGG--TTSSS--TTTTGGS-BTTTTB-SHHHHHHHHHHHTS-TTT-TTHHHH-HHHHHHHHHHH
T ss_pred ccccccCCccccccCccCccCCCCCeEecccccccchhhhHHHHHHHhCCccccChHHHHhhHHHHHHhhhhh
Confidence 14666 6788999999999999999999999999999999999999999999999999999998
No 2
>cd00325 chitinase_glyco_hydro_19 Glycoside hydrolase family 19 chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases but they are smaller in size due to certain deletions. Despite any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different en
Probab=100.00 E-value=4.2e-46 Score=312.25 Aligned_cols=133 Identities=56% Similarity=0.909 Sum_probs=123.6
Q ss_pred CCHHHHHHhhhcC-CCCCcCCCcccHHHHHHHhhcCCccCCC----CCHHHHHHHhhhhcccCCCceeccccCCCC-CCC
Q 030642 41 VTPEFFDGIKNQA-PATCEGKGFYTRDAFITALNSYPEFGRT----DTNREVAAFFAHVTHETTDFCYIEEKNKAD-PHC 114 (174)
Q Consensus 41 iT~~~f~~i~~~~-~~~~~~~~fyty~~fi~aln~~~~fgi~----~t~~~lA~FlAq~~hETggf~~~~E~~~~~-~Y~ 114 (174)
||+++|++||+++ +..|++++||||++||.|+++||+|+.+ ++|+|+||||||++|||++|++++|+..+. .||
T Consensus 1 ~t~~~f~~~~~~~~~~~c~~~~fYTy~~fi~Aa~~fp~f~~~g~~~~~krElAaFlAq~~hETgg~~~~~e~~~~~~g~c 80 (230)
T cd00325 1 VTESLFEGIFSHRNDSGCPAKGFYTYDAFITAANSFPGFGTTGDDDTRKREIAAFFAHTSHETGGGCYIAPDGPYAWGYC 80 (230)
T ss_pred CCHHHHHHHhhcCCCCCCCCCCCCcHHHHHHHHHhccccccCCCchhhHHHHHHHHhhhcccCCCCccccccccccCCcc
Confidence 7999999999998 5679999999999999999999999986 699999999999999999999999976543 455
Q ss_pred C------------CCCCCCCCCCccccCcccccccchhHHHHHHHhCCCCCCChhhhhcChHHHHHhhccC
Q 030642 115 T------------SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTLCGF 173 (174)
Q Consensus 115 ~------------n~~~~~gdG~~Y~GRG~iQLTg~~NY~~~~~~lg~dl~~nPdlva~dp~~A~~sA~WF 173 (174)
. .+++||+||++|||||+||||||+||+++++++|.|||+|||+|++||++||++|+||
T Consensus 81 ~~~e~~~~~~~~~~~~~pc~dG~~Y~GRG~iQLT~~~NY~~~g~~lg~dll~~Pdlva~dp~~a~~sA~Wf 151 (230)
T cd00325 81 DKSETGPPSSYCDPAQWPCAPGKKYYGRGPIQLSWNYNYGPAGKALGFDLLNNPDLVATDPVVSFKTAIWF 151 (230)
T ss_pred ccccCCCcccccccCCCCCCcccccccCCceeeeehhhHHHHHHHhCCccccCHHHHhcCchhhhhhhhhh
Confidence 4 2578999999999999999999999999999999999999999999999999999998
No 3
>KOG4742 consensus Predicted chitinase [General function prediction only]
Probab=100.00 E-value=3.5e-42 Score=294.17 Aligned_cols=139 Identities=53% Similarity=0.892 Sum_probs=132.2
Q ss_pred CCcccCCCHHHHHHhhhcCCCC-CcCCCcccHHHHHHHhhcCCccCCC----CCHHHHHHHhhhhcccC---------C-
Q 030642 35 NSVTDLVTPEFFDGIKNQAPAT-CEGKGFYTRDAFITALNSYPEFGRT----DTNREVAAFFAHVTHET---------T- 99 (174)
Q Consensus 35 ~~v~~iiT~~~f~~i~~~~~~~-~~~~~fyty~~fi~aln~~~~fgi~----~t~~~lA~FlAq~~hET---------g- 99 (174)
+.++++||+++|+.||++++.+ |++++||||++|+.|.+.|++||.+ +.+||+|+||||+.||| |
T Consensus 60 ~~i~~~~T~~~F~~i~~~~~~g~c~~~gfyty~aFi~Aa~sfp~fg~t~~~~~~kreiAaf~ah~~~ETs~g~~~~~~G~ 139 (286)
T KOG4742|consen 60 SKIESSVTPELFEDIFSKVGSGWCPAKGFYTYDAFIIAARSFPEFGGTGNKNTAKREIAAFFAHVTHETSGGSNCAPRGP 139 (286)
T ss_pred ccccccccHHHHHHHhccccCCCCCCCCCccccHHHHHHHhcccccccCcccccchhhhhhhhhheecccCcccccCCCc
Confidence 4599999999999999999887 9999999999999999999999998 89999999999999999 6
Q ss_pred ---CceeccccCC-CCCCCC--CCC-CCCCCCCccccCcccccccchhHHHHHHHhCCCCCCChhhhhcChHHHHHhhcc
Q 030642 100 ---DFCYIEEKNK-ADPHCT--SPQ-YPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISFKTLCG 172 (174)
Q Consensus 100 ---gf~~~~E~~~-~~~Y~~--n~~-~~~gdG~~Y~GRG~iQLTg~~NY~~~~~~lg~dl~~nPdlva~dp~~A~~sA~W 172 (174)
+||+.+|+.. ...||+ +.. |||..|+.|+|||+|||+|||||++++++||+||++|||+|+.||.+||++|+|
T Consensus 140 ~~~~fc~~~e~s~~~~~YC~~s~~~~yPCs~gk~Y~GRG~iQlsWNyNYG~ag~alg~dLL~~Pe~V~~np~lAf~~alW 219 (286)
T KOG4742|consen 140 FYWGFCYKEEISPSSGRYCDASNQITYPCSPGKSYYGRGPIQLSWNYNYGAAGKALGLDLLRNPELVAMNPVLAFKAALW 219 (286)
T ss_pred cccCcccccccChhhhccCCcccceEeecCCCCcccccCcccccccccccHhHhhcCchhhcCcchhccCchhhhheeee
Confidence 8999999988 568999 344 999999999999999999999999999999999999999999999999999999
Q ss_pred C
Q 030642 173 F 173 (174)
Q Consensus 173 F 173 (174)
|
T Consensus 220 f 220 (286)
T KOG4742|consen 220 F 220 (286)
T ss_pred e
Confidence 8
No 4
>COG3179 Predicted chitinase [General function prediction only]
Probab=99.97 E-value=2.1e-31 Score=216.37 Aligned_cols=125 Identities=30% Similarity=0.368 Sum_probs=108.3
Q ss_pred cCCCHHHHHHhhhcCCCCCcCCCcccHHHHHHHhhc-CCccCCCCCHHHHHHHhhhhcccCCCceeccccCCCC------
Q 030642 39 DLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNS-YPEFGRTDTNREVAAFFAHVTHETTDFCYIEEKNKAD------ 111 (174)
Q Consensus 39 ~iiT~~~f~~i~~~~~~~~~~~~fyty~~fi~aln~-~~~fgi~~t~~~lA~FlAq~~hETggf~~~~E~~~~~------ 111 (174)
..||+.+|.+|+|++ .+. ...++.++.. +.+||| ++|.|+||||||+.||||||..+.|+.+||
T Consensus 2 ~~i~e~~~~ki~p~a-----~k~---~~~v~~al~~~l~~~gi-~~p~r~AmFlAQ~~HESggf~rl~EnlnYSaq~L~~ 72 (206)
T COG3179 2 KTITEVDLRKIFPKA-----RKE---FVDVIVALQPALDEAGI-TTPLRQAMFLAQVMHESGGFTRLDENLNYSAQGLLQ 72 (206)
T ss_pred cchhHHHHHHhcchh-----hhh---hHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHhhhcCCceeehhhcchHHHHHHH
Confidence 468999999999985 233 3556777774 999999 999999999999999999999999999986
Q ss_pred -------------------------CCCC---CCCCCCCCCCccccCcccccccchhHHHHHHHhCCCCCCChhhhhcCh
Q 030642 112 -------------------------PHCT---SPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDR 163 (174)
Q Consensus 112 -------------------------~Y~~---n~~~~~gdG~~Y~GRG~iQLTg~~NY~~~~~~lg~dl~~nPdlva~dp 163 (174)
.|.. |++...+|||+|||||.|||||++||..+++++|.||+.||+++..+
T Consensus 73 tf~~r~~~~~~a~~~~g~p~aian~~y~~RlGN~~e~sgDGw~yRgrg~iQiTGrdNY~~~g~alg~dlv~~P~~~~~~- 151 (206)
T COG3179 73 TFPKRFPDFRYAREIAGNPPAIANRVYGTRLGNGPEKSGDGWLYRGRGLIQITGRDNYRRCGRALGLDLVANPGQLELD- 151 (206)
T ss_pred hccccCCchhhhhhhccChHHHHhhhhcccccCCCCCCCCceeeccCcceeeecchHHHHHHHhhCCCccCChhhhccC-
Confidence 0332 44456899999999999999999999999999999999999999995
Q ss_pred HHHHHhhccC
Q 030642 164 VISFKTLCGF 173 (174)
Q Consensus 164 ~~A~~sA~WF 173 (174)
.++.++|+||
T Consensus 152 ~~~a~~a~wy 161 (206)
T COG3179 152 PHAARVAAWY 161 (206)
T ss_pred hHhhhhHHHH
Confidence 5689999997
No 5
>cd00442 lysozyme_like lysozyme_like domain. This contains several members including Soluble Lytic Transglycosylases (SLT), Goose Egg-White Lysozymes (GEWL), Hen Egg-White Lysozymes (HEWL), chitinases, bacteriophage lambda lysozymes, endolysins, autolysins, and chitosanases. All the members are involved in the hydrolysis of beta-1,4- linked polysaccharides.
Probab=99.43 E-value=3.4e-14 Score=105.04 Aligned_cols=77 Identities=22% Similarity=0.126 Sum_probs=69.8
Q ss_pred HHHhhhhcccCCCceeccccCCCCCCCCCCCCCCCCCCccccCcccccccchhHHHHHHHhCCCCCCChhhhhcChHHHH
Q 030642 88 AAFFAHVTHETTDFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNYIEAGRAIGFDGLNSPETVARDRVISF 167 (174)
Q Consensus 88 A~FlAq~~hETggf~~~~E~~~~~~Y~~n~~~~~gdG~~Y~GRG~iQLTg~~NY~~~~~~lg~dl~~nPdlva~dp~~A~ 167 (174)
|.|.++.+||+.+++..++.+ || ||..|..|+|||++|+||++||...++.+++|++++|++++.+|.+++
T Consensus 1 a~~~~i~~~E~~~~~~~~~~G----y~-----~~~~~~~~~~~G~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (105)
T cd00442 1 AIIDMLASSEGTDLKAYKDRG----HG-----TLNPGERGYGIGLYQLTSRWSDAYRARGIGLKLLAQLILKLFNPKVQD 71 (105)
T ss_pred ChhhhhhhcccCCCcccccCC----CC-----CCCCCCcccccCceeeeeccCccccccccCcchhcCcchhccCchHHH
Confidence 568899999999998887742 65 677788999999999999999999999999999999999999999999
Q ss_pred HhhccC
Q 030642 168 KTLCGF 173 (174)
Q Consensus 168 ~sA~WF 173 (174)
+.+.||
T Consensus 72 ~~a~~~ 77 (105)
T cd00442 72 KQALQQ 77 (105)
T ss_pred HHHHHH
Confidence 999996
No 6
>PF09447 Cnl2_NKP2: Cnl2/NKP2 family protein; InterPro: IPR018565 This entry includes the Cnl2 kinetochore protein [].
Probab=49.00 E-value=17 Score=25.29 Aligned_cols=19 Identities=21% Similarity=0.368 Sum_probs=17.5
Q ss_pred CCcccCCCHHHHHHhhhcC
Q 030642 35 NSVTDLVTPEFFDGIKNQA 53 (174)
Q Consensus 35 ~~v~~iiT~~~f~~i~~~~ 53 (174)
+.+.++||-++|.++||.+
T Consensus 14 s~L~~iisl~qF~~LFPr~ 32 (67)
T PF09447_consen 14 SSLPDIISLEQFRKLFPRR 32 (67)
T ss_pred CccccccCHHHHHHHcccc
Confidence 6889999999999999975
No 7
>PF11127 DUF2892: Protein of unknown function (DUF2892); InterPro: IPR021309 This family is conserved in bacteria. The function is not known.
Probab=46.35 E-value=26 Score=23.26 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=23.2
Q ss_pred CCCCChHHHHHHHHHHHHHHHhhcCCc
Q 030642 3 NQNISPKMALLNVFLGLFLLALANIPR 29 (174)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 29 (174)
.+|+++.-|.+++++|++++...+...
T Consensus 2 ~~Nvg~~dR~~R~~~G~~l~~~~~~~~ 28 (66)
T PF11127_consen 2 KKNVGTTDRIVRIIIGIVLLALGLLGL 28 (66)
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHhc
Confidence 589999999999999999988766653
No 8
>PF12451 VPS11_C: Vacuolar protein sorting protein 11 C terminal; InterPro: IPR024763 Vps 11 is one of the evolutionarily conserved class C vacuolar protein sorting genes (c-vps: vps11, vps16, vps18, and vps33), whose products physically associate to form the c-vps protein complex required for vesicle docking and fusion. This entry represents the C-terminal domain of vps11.
Probab=38.19 E-value=13 Score=23.98 Aligned_cols=17 Identities=29% Similarity=0.595 Sum_probs=7.7
Q ss_pred HhhhhcccCCCceeccc
Q 030642 90 FFAHVTHETTDFCYIEE 106 (174)
Q Consensus 90 FlAq~~hETggf~~~~E 106 (174)
|..++...+++|..+.|
T Consensus 24 F~~~L~~s~D~F~vIae 40 (49)
T PF12451_consen 24 FFKQLEESEDRFSVIAE 40 (49)
T ss_pred HHHHHHhCCCCchhHHH
Confidence 44444334444554444
No 9
>PF13623 SurA_N_2: SurA N-terminal domain
Probab=37.06 E-value=37 Score=26.60 Aligned_cols=86 Identities=15% Similarity=0.176 Sum_probs=51.8
Q ss_pred CCChHHHHHHHHHHHHHHHhhcCCcccccCCC-----------cccCCCHHHHHHhhhcCC------CCCcCCC------
Q 030642 5 NISPKMALLNVFLGLFLLALANIPRNVVCQNS-----------VTDLVTPEFFDGIKNQAP------ATCEGKG------ 61 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------v~~iiT~~~f~~i~~~~~------~~~~~~~------ 61 (174)
.|--+-++|-+||||.+++|.+..... |+.. -++-||.++|++...... .+-....
T Consensus 3 kIR~r~~lLi~vIglAL~aFIv~d~~~-~~~~~~~~~~~VG~VnGe~Is~~ef~~~v~~~~~~~k~~~g~~~~~~~~~q~ 81 (145)
T PF13623_consen 3 KIRQRGGLLIIVIGLALFAFIVGDFRS-GSGFFGSSQNVVGEVNGEKISYQEFQQRVEQATENYKQQNGRSPTEQEQNQI 81 (145)
T ss_pred hHhhcchHHHHHHHHHHHHHHHHHHhc-cCCCcCCCCCeeEeECCEEcCHHHHHHHHHHHHHHHHHHcCCCCChHHHHHH
Confidence 455577899999999999988754322 2211 345689999987654321 1110100
Q ss_pred -cccHHHHHHHh--h-cCCccCCCCCHHHHHHHh
Q 030642 62 -FYTRDAFITAL--N-SYPEFGRTDTNREVAAFF 91 (174)
Q Consensus 62 -fyty~~fi~al--n-~~~~fgi~~t~~~lA~Fl 91 (174)
=-.++.++... + .+.+.|++.++.|+-..+
T Consensus 82 ~~qvW~~~V~~~ll~~e~eklGi~Vs~~El~d~l 115 (145)
T PF13623_consen 82 RNQVWNQMVQNILLEQEFEKLGITVSDDELQDML 115 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCccCHHHHHHHH
Confidence 00133344332 2 278999977999998888
No 10
>cd08327 CARD_RAIDD Caspase activation and recruitment domain of RIP-associated ICH-1 homologous protein with a death domain. Caspase activation and recruitment domain (CARD) of RAIDD (RIP-associated ICH-1 homologous protein with a death domain), also known as CRADD (Caspase and RIP adaptor). RAIDD is an adaptor protein that together with the p53-inducible protein PIDD and caspase-2, forms the PIDDosome complex, which is required for caspase-2 activation and plays a role in mediating stress-induced apoptosis. RAIDD contains an N-terminal CARD, which interacts with the caspase-2 CARD, and a C-terminal Death domain (DD), which interacts with the DD of PIDD. In general, CARDs are DDs associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation and host-defense mechanisms. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodime
Probab=27.16 E-value=47 Score=24.33 Aligned_cols=38 Identities=21% Similarity=0.439 Sum_probs=25.7
Q ss_pred cCCCHHHHHHhhhcCCCC---------CcCCCcccHHHHHHHhhcCC
Q 030642 39 DLVTPEFFDGIKNQAPAT---------CEGKGFYTRDAFITALNSYP 76 (174)
Q Consensus 39 ~iiT~~~f~~i~~~~~~~---------~~~~~fyty~~fi~aln~~~ 76 (174)
.|+|+++.+.|-...... -|.+|...+..|++++..||
T Consensus 34 gIlT~~~~e~I~a~~T~~~k~~~LLdiLp~RG~~AF~~F~~aL~e~~ 80 (94)
T cd08327 34 GILTESHVEEIESQTTSRRKTMKLLDILPSRGPKAFHAFLDSLEEFP 80 (94)
T ss_pred CCCCHHHHHHHHccCChHHHHHHHHHHHHhhChhHHHHHHHHHHHHH
Confidence 488998888887543111 24556667888999887654
No 11
>KOG3866 consensus DNA-binding protein of the nucleobindin family [General function prediction only]
Probab=26.65 E-value=67 Score=29.19 Aligned_cols=60 Identities=13% Similarity=0.259 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHhhcCCcccccCCCcccCCCHHHHHHhhhcCCCCCcCCCcccHHHHHHHhh
Q 030642 12 LLNVFLGLFLLALANIPRNVVCQNSVTDLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALN 73 (174)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~iiT~~~f~~i~~~~~~~~~~~~fyty~~fi~aln 73 (174)
+..+++.+++++..++...+ |...+..--+..+-....-.....-|-.++| |..++..+.
T Consensus 3 ~~~~~l~l~~llvllll~av-~avPl~~~a~~~q~~~~~e~pate~pdtGly-Y~~YL~eVi 62 (442)
T KOG3866|consen 3 WRTMILPLVILLVLLLLDAV-CAVPLRQQAEQAQAQDVQEQPATEDPDTGLY-YTKYLEEVI 62 (442)
T ss_pred chhhHHHHHHHHHHHHHhhh-cCCcccccchhhhhcccccCCCCCCCcccch-HHHHHHHHH
Confidence 33444444443333333222 5555544434333222211122233445676 777766554
No 12
>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]
Probab=23.09 E-value=38 Score=29.12 Aligned_cols=25 Identities=28% Similarity=0.341 Sum_probs=19.2
Q ss_pred CCCChHHHHHHHHHHHHHH---HhhcCC
Q 030642 4 QNISPKMALLNVFLGLFLL---ALANIP 28 (174)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~---~~~~~~ 28 (174)
|+|+||+-|+|.+|+|=.- +|++.+
T Consensus 97 q~LkPD~~LRnlLL~l~~r~k~~FTNa~ 124 (244)
T KOG3109|consen 97 QDLKPDPVLRNLLLSLKKRRKWIFTNAY 124 (244)
T ss_pred hhcCCCHHHHHHHHhCccccEEEecCCc
Confidence 6799999999999987543 355544
No 13
>PRK01617 hypothetical protein; Provisional
Probab=20.04 E-value=52 Score=26.18 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=18.8
Q ss_pred hcccCCCceeccccCCCCCCCC--------CCCCCCCCCCccc
Q 030642 94 VTHETTDFCYIEEKNKADPHCT--------SPQYPCANGKFYY 128 (174)
Q Consensus 94 ~~hETggf~~~~E~~~~~~Y~~--------n~~~~~gdG~~Y~ 128 (174)
.-||...|....-.+ -|.+ |.+-|||.|++|+
T Consensus 110 ~~~ErS~F~r~~g~W---~Yvdg~~~~~grN~pCpCgSgkK~K 149 (154)
T PRK01617 110 AIIERSRFLKENGQW---YYIDGTRPQFGRNDPCPCGSGKKFK 149 (154)
T ss_pred eEEEeeeeEEeCCCE---EecCCCCCcCCCCCccccCCCcchh
Confidence 566766665432111 2332 5556789999986
Done!