Query 030643
Match_columns 174
No_of_seqs 105 out of 1404
Neff 10.0
Searched_HMMs 29240
Date Tue Mar 26 18:35:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/030643.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_2342-2346//hhsearch_pdb/030643hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lxx_A GTPase IMAP family memb 1.0 1 1 135.2 14.5 145 16-164 25-169 (239)
2 3lxw_A GTPase IMAP family memb 1.0 1 1 129.8 12.6 143 17-164 18-162 (247)
3 2xtp_A GTPase IMAP family memb 1.0 1 1 121.6 16.0 141 16-161 18-159 (260)
4 3def_A T7I23.11 protein; chlor 1.0 1 1 116.8 16.8 144 17-164 33-177 (262)
5 1h65_A Chloroplast outer envel 1.0 1 1 115.4 16.3 142 18-163 37-179 (270)
6 3iev_A GTP-binding protein ERA 1.0 1 1 114.1 14.0 131 14-152 4-136 (308)
7 4dcu_A GTP-binding protein ENG 1.0 1 1 112.9 6.4 131 18-159 193-327 (456)
8 1mky_A Probable GTP-binding pr 1.0 1 1 111.8 13.0 59 21-81 181-239 (439)
9 1wf3_A GTP-binding protein; GT 1.0 1 1 110.9 16.7 128 19-154 6-133 (301)
10 2hjg_A GTP-binding protein ENG 1.0 1 1 110.5 8.3 130 19-159 174-307 (436)
No 1
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=1.00 E-value=1 Score=135.19 Aligned_cols=145 Identities=41% Similarity=0.732 Sum_probs=113.2
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 99983389998499998889999873886432346898742256778999748957999938999999999088999999
Q 030643 16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~iiDtpg~~~~~~~~~~~~~~~~ 95 (174)
+.....+|+++|.+|+|||||+|+|++...+..+....+.|..+......+ .+..+.++||||+.+..........++.
T Consensus 25 ~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~liDTpG~~~~~~~~~~~~~~~~ 103 (239)
T 3lxx_A 25 PRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSW-KETELVVVDTPGIFDTEVPNAETSKEII 103 (239)
T ss_dssp ---CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEE-TTEEEEEEECCSCC-----CHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEEEE-CCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 999965999988999989999999829986765899885303688888886-7966999979985578888799999999
Q ss_pred HHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 998740699319999996899889889999999999870400082899995767889980108998502
Q 030643 96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 164 (174)
Q Consensus 96 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 164 (174)
+++..+.+.+|++++|+|.+ +++..+..+++.+...++.....|+++|+||+|.+... .+++++..
T Consensus 104 ~~~~~~~~~~~~~l~v~d~~-~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~--~~~~~i~~ 169 (239)
T 3lxx_A 104 RCILLTSPGPHALLLVVPLG-RYTEEEHKATEKILKMFGERARSFMILIFTRKDDLGDT--NLHDYLRE 169 (239)
T ss_dssp HHHHHTTTCCSEEEEEEETT-CCSSHHHHHHHHHHHHHHHHHGGGEEEEEECGGGC-------------
T ss_pred HHHHHCCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC--CHHHHHHH
T ss_conf 99984699980999992289-99999999999999885230346099999677668864--59999986
No 2
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=1.00 E-value=1 Score=129.76 Aligned_cols=143 Identities=35% Similarity=0.554 Sum_probs=105.2
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCH-HHHHHHHH
Q ss_conf 99833899984999988899998738864323468987422567789997489579999389999999990-88999999
Q 030643 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGS-EFVGKEIV 95 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~iiDtpg~~~~~~~~-~~~~~~~~ 95 (174)
..+..+|+++|.+|+|||||+|+|++...+.......+.|..+......+ .+..+.++||||+.+..... +....++.
T Consensus 18 ~~~~l~I~lvG~~g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~-~~~~i~liDTPG~~~~~~~~~~~~~~~i~ 96 (247)
T 3lxw_A 18 GESTRRLILVGRTGAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRW-DKCHVEVVDTPDIFSSQVSKTDPGCEERG 96 (247)
T ss_dssp --CEEEEEEESSTTSSHHHHHHHHHTSCCC---------CCSCEEEEEEE-TTEEEEEEECCSCSSTTHHHHSTTSHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEE-CCCEEEEEECCCCCCCCCCCHHHHHHHHH
T ss_conf 79950899989999819999999839987655689998066179999997-89579999897977777771889999999
Q ss_pred HHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH-CCCEEEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 998740699319999996899889889999999999870400-082899995767889980108998502
Q 030643 96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKI-FDYMIVVFTGGDELEDNDETLEDYLGR 164 (174)
Q Consensus 96 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~iv~tk~D~~~~~~~~~~~~~~~ 164 (174)
+++..+...+|++++|+|++ +++..+..+++.+...++... ..++++++||.|+... .+++++..
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~~---~~~~~l~~ 162 (247)
T 3lxw_A 97 HCYLLSAPGPHALLLVTQLG-RFTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAGG---SLHDYVSN 162 (247)
T ss_dssp HHHHHHTTCCSEEEEEEETT-BCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHHHHH
T ss_pred HHHHHCCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHCHHHHCCEEEEEECHHHCCCC---CHHHHHHH
T ss_conf 99984277887899997679-78889999999999984813226679999835753899---79999861
No 3
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=1.00 E-value=1 Score=121.64 Aligned_cols=141 Identities=34% Similarity=0.597 Sum_probs=104.7
Q ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHH
Q ss_conf 99983389998499998889999873886432346898742256778999748957999938999999999088999999
Q 030643 16 PSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIV 95 (174)
Q Consensus 16 ~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~iiDtpg~~~~~~~~~~~~~~~~ 95 (174)
+..+..+|+++|.+|+|||||+|.+++...+.......+.|..+......+ .+..+.++||||+.++....+...+.+.
T Consensus 18 ~~~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~~i~iiDTpG~~~~~~~~~~~~~~i~ 96 (260)
T 2xtp_A 18 ASRSELRIILVGKTGTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSW-GNREIVIIDTPDMFSWKDHCEALYKEVQ 96 (260)
T ss_dssp ---CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEE-TTEEEEEEECCGGGGSSCCCHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEE-CCCEEEEEECCCCCCCCCCHHHHHHHHH
T ss_conf 999954999988999988999999849987655778885005667877886-8988999989199998777799999999
Q ss_pred HHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEE-CCCCCCCCHHHHHHH
Q ss_conf 998740699319999996899889889999999999870400082899995-767889980108998
Q 030643 96 KCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFT-GGDELEDNDETLEDY 161 (174)
Q Consensus 96 ~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~t-k~D~~~~~~~~~~~~ 161 (174)
+.+..++..+|++++|+|++ +++..+..+++.+...++.....|.++++| |+|.... .+.++
T Consensus 97 ~~~~~~~~~~d~il~V~d~~-~~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~---~~~~~ 159 (260)
T 2xtp_A 97 RCYLLSAPGPHVLLLVTQLG-RYTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGG---SLMDY 159 (260)
T ss_dssp HHHHHHTTCCSEEEEEEETT-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTC---CHHHH
T ss_pred HHHHHCCCCCCEEEEEEECC-CCCHHHHHHHHHHHHHHCCHHHCCEEEEEECCCCCCCC---CHHHH
T ss_conf 99985599985899997188-78989999999999982811023479999846436875---59999
No 4
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=1.00 E-value=1 Score=116.79 Aligned_cols=144 Identities=22% Similarity=0.313 Sum_probs=104.3
Q ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHH
Q ss_conf 99833899984999988899998738864323468987422567789997489579999389999999990889999999
Q 030643 17 SNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVK 96 (174)
Q Consensus 17 ~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~iiDtpg~~~~~~~~~~~~~~~~~ 96 (174)
..+..+|+++|.+|+|||||+|++++....... ...+.|.........+ .+..+.++||||+.++....+...+.+.+
T Consensus 33 ~~~~~~I~lvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~liDTpG~~~~~~~~~~~~~~i~~ 110 (262)
T 3def_A 33 DMNSMTVLVLGKGGVGKSSTVNSLIGEQVVRVS-PFQAEGLRPVMVSRTM-GGFTINIIDTPGLVEAGYVNHQALELIKG 110 (262)
T ss_dssp TCCEEEEEEEECTTSSHHHHHHHHHTSCCSCCC-SSCC-CCCCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCCCCEEEEEEEEEE-CCEEEEEEECCCCCCCCCCHHHHHHHHHH
T ss_conf 688758999899999999999998299874237-8898502369999987-89469999898988753116999999999
Q ss_pred HHHHCCCCCEEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHCC
Q ss_conf 98740699319999996899-889889999999999870400082899995767889980108998502
Q 030643 97 CIGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLGR 164 (174)
Q Consensus 97 ~~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~~ 164 (174)
++ ...++|++++|++.+. .++..+..+++.+...++.....++++++||+|....+...+++++..
T Consensus 111 ~l--~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~~~~~~e~~~~~ 177 (262)
T 3def_A 111 FL--VNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPPDELSYETFSSK 177 (262)
T ss_dssp HT--TTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCSTTCCHHHHHHH
T ss_pred HH--HCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCHHHHCCEEEEEECCCCCCCCCCCHHHHHHH
T ss_conf 98--53798989999748877899899999999999856352437899996733479877659999986
No 5
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=1.00 E-value=1 Score=115.37 Aligned_cols=142 Identities=23% Similarity=0.326 Sum_probs=97.2
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 98338999849999888999987388643234689874225677899974895799993899999999908899999999
Q 030643 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKC 97 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~iiDtpg~~~~~~~~~~~~~~~~~~ 97 (174)
....+|+++|.+|+|||||+|++++....... ...+.+.......... ....+.++||||+.++..........+.++
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~~~~~~~-~~~~~t~~~~~~~~~~-~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~ 114 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGERVVSIS-PFQSEGPRPVMVSRSR-AGFTLNIIDTPGLIEGGYINDMALNIIKSF 114 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTSCCSCCC-SSSCCCSSCEEEEEEE-TTEEEEEEECCCSEETTEECHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCCCCEEEEEEEEEE-CCEEEEEEECCCCCCCCCCHHHHHHHHHHH
T ss_conf 99759999889999899999999599863226-8898632268999864-996799998988888752569999999998
Q ss_pred HHHCCCCCEEEEEEEECCC-CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHC
Q ss_conf 8740699319999996899-88988999999999987040008289999576788998010899850
Q 030643 98 IGMAKDGIHAVLVVFSVRS-RFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLEDYLG 163 (174)
Q Consensus 98 ~~~~~~~~~~ii~v~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~~~~~ 163 (174)
+ ...++|++++|++.+. .++..+..+++.+...++.....++++|+||+|...++...++++++
T Consensus 115 ~--~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~~~~~~~~~~ 179 (270)
T 1h65_A 115 L--LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLPYDEFFS 179 (270)
T ss_dssp T--TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCCHHHHHH
T ss_pred H--HCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHH
T ss_conf 6--3379999999984888868889999999999872700226789999786667867888999999
No 6
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=1.00 E-value=1 Score=114.05 Aligned_cols=131 Identities=19% Similarity=0.291 Sum_probs=92.6
Q ss_pred CCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEEC-CCEEEEEECCCCCCCCCCHHHHHH
Q ss_conf 8999983389998499998889999873886432346898742256778999748-957999938999999999088999
Q 030643 14 TSPSNGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKD-GQVVNVIDTPGLFDFSAGSEFVGK 92 (174)
Q Consensus 14 ~~~~~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~-~~~~~iiDtpg~~~~~~~~~~~~~ 92 (174)
..++.+...++++|.+|+|||||+|.+++....... ...+.|.......... . +..+.++||||+.++. ....+..
T Consensus 4 ~~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~i~s-~~~~tT~~~~~~~~~~-~~~~~i~lvDTPG~~~~~-~~~~l~~ 80 (308)
T 3iev_A 4 HHHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVSIIS-PKAGTTRMRVLGVKNI-PNEAQIIFLDTPGIYEPK-KSDVLGH 80 (308)
T ss_dssp ---CCEEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTTEEEEEEECCCCCCCC-TTCHHHH
T ss_pred CCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCCCEEEEEEEEEEC-CCCCEEEEEECCCCCCCC-CCHHHHH
T ss_conf 999999978999999999699999999689854568-9998306678999933-899819999892998644-3206889
Q ss_pred HHHHHHHHCCCCCEEEEEEEECCCCCCHHHHHH-HHHHHHHHHHHHCCCEEEEEECCCCCC
Q ss_conf 999998740699319999996899889889999-999999870400082899995767889
Q 030643 93 EIVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAA-LHSLQTLFGKKIFDYMIVVFTGGDELE 152 (174)
Q Consensus 93 ~~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~iv~tk~D~~~ 152 (174)
.+...+..++..+|++++|+|+++..+..+... ++.+... ..|+++++||+|...
T Consensus 81 ~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l~~~-----~~pvilV~NK~Dl~~ 136 (308)
T 3iev_A 81 SMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFIKPL-----NKPVIVVINKIDKIG 136 (308)
T ss_dssp HHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHTGGG-----CCCEEEEEECGGGSS
T ss_pred HHHHHHHHHHHCCCEEEEEEECCCCCCCHHHHHHHHHHHHC-----CCCEEEEEECCCCCC
T ss_conf 99999998761298999999688789802389999998755-----998899997900789
No 7
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=1.00 E-value=1 Score=112.90 Aligned_cols=131 Identities=18% Similarity=0.254 Sum_probs=74.6
Q ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCC----CHHHHHHH
Q ss_conf 98338999849999888999987388643234689874225677899974895799993899999999----90889999
Q 030643 18 NGERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSA----GSEFVGKE 93 (174)
Q Consensus 18 ~~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~iiDtpg~~~~~~----~~~~~~~~ 93 (174)
....+++++|.+|+|||||+|.+++....... ...+.|.........+ .+..+.++||||+.+... ........
T Consensus 193 ~~~~ki~ivG~~~vGKSslin~l~~~~~~~~~-~~~gtt~~~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~ 270 (456)
T 4dcu_A 193 EEVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLR 270 (456)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHTSTTEEEC-C------CTTSEEEEE-TTEEEEETTGGGTTTBTTBCCCCSHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCCEEEEEEEEEEEE-CCCEEEEEECCCCCCCCCCCHHHHHHHHHH
T ss_conf 55514677328999878999998577850257-9997488779999998-996399998999986766423788999999
Q ss_pred HHHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 999987406993199999968998898899999999998704000828999957678899801089
Q 030643 94 IVKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE 159 (174)
Q Consensus 94 ~~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~ 159 (174)
....+ ..+|++++|+|+++++...+..+...+.+. . .++++|+||+|+...+....+
T Consensus 271 ~~~~~----~~ad~~llviD~~~~~~~~~~~~~~~~~~~---~--~~~ilv~NK~Dl~~~~~~~~~ 327 (456)
T 4dcu_A 271 ALKAI----DRSEVVAVVLDGEEGIIEQDKRIAGYAHEA---G--KAVVIVVNKWDAVDKDESTMK 327 (456)
T ss_dssp HHHHH----HHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSCCCSSHHH
T ss_pred HHHHH----HHCCEEEEEEECCCCCCHHHHHHHHHHHHC---C--CCEEEEEECHHCCCCCHHHHH
T ss_conf 99988----539999999958877679999999999983---9--987999997444897468999
No 8
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=1.00 E-value=1 Score=111.85 Aligned_cols=59 Identities=31% Similarity=0.359 Sum_probs=23.7
Q ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCC
Q ss_conf 3899984999988899998738864323468987422567789997489579999389999
Q 030643 21 RTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLF 81 (174)
Q Consensus 21 ~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~iiDtpg~~ 81 (174)
.+++++|++|+|||||+|.+++....... ...+.|.........+ .+..+.++||||+.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~~~~~i~~-~g~~~~l~Dt~G~~ 239 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVS-PIPGTTRDPVDDEVFI-DGRKYVFVDTAGLR 239 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEEC-CCC------CCEEEEE-TTEEEEESSCSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCC-CCCCCCCCCEEEEEEE-CCEEEEEEECCCCC
T ss_conf 16999788999879999998387652468-9999748735799999-99789999998976
No 9
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=1.00 E-value=1 Score=110.86 Aligned_cols=128 Identities=21% Similarity=0.185 Sum_probs=89.9
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHH
Q ss_conf 83389998499998889999873886432346898742256778999748957999938999999999088999999998
Q 030643 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAGSEFVGKEIVKCI 98 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~iiDtpg~~~~~~~~~~~~~~~~~~~ 98 (174)
+...++++|.+|+|||||+|++++....... ...+.|.........+ .+..+.++||||+.+.. ..+...+....
T Consensus 6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~ivs-~~~~tTr~~i~~i~~~-~~~~l~l~DTpG~~~~~---~~l~~~~~~~~ 80 (301)
T 1wf3_A 6 YSGFVAIVGKPNVGKSTLLNNLLGVKVAPIS-PRPQTTRKRLRGILTE-GRRQIVFVDTPGLHKPM---DALGEFMDQEV 80 (301)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHTSCCSCCC-SSSCCCCSCEEEEEEE-TTEEEEEEECCCCCCCC---SHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCEEEEC-CCCCCEEEEEEEEEEE-CCCEEEEECCCCCCCHH---HHHHHHHHHHH
T ss_conf 1788999999999899999999589356535-9998126899999970-89579995275302400---57899999999
Q ss_pred HHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC
Q ss_conf 74069931999999689988988999999999987040008289999576788998
Q 030643 99 GMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDN 154 (174)
Q Consensus 99 ~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~ 154 (174)
..++..+|++++|+|++++++..+..+++.+.... . ..|+++++||+|+....
T Consensus 81 ~~~l~~ad~il~VvD~~~~~~~~~~~i~~~l~~~~-~--~~p~ilV~NK~Dl~~~~ 133 (301)
T 1wf3_A 81 YEALADVNAVVWVVDLRHPPTPEDELVARALKPLV-G--KVPILLVGNKLDAAKYP 133 (301)
T ss_dssp HHHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGT-T--TSCEEEEEECGGGCSSH
T ss_pred HHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHC-C--CCCEEEEEECCCCCCCH
T ss_conf 99985499999999799999867999999998645-8--99889999871247736
No 10
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=110.52 Aligned_cols=130 Identities=18% Similarity=0.232 Sum_probs=85.0
Q ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCC----HHHHHHHH
Q ss_conf 83389998499998889999873886432346898742256778999748957999938999999999----08899999
Q 030643 19 GERTVVLVGRTGNGKSATGNSILGRRAFKSRASSSGVTSTCEMQRTVLKDGQVVNVIDTPGLFDFSAG----SEFVGKEI 94 (174)
Q Consensus 19 ~~~~i~i~G~~g~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~iiDtpg~~~~~~~----~~~~~~~~ 94 (174)
...+++++|.+|+|||||+|.+++....... ...+.|.........+ .+..+.++||||+.+.... ........
T Consensus 174 ~~~ki~lvG~~nvGKSSLin~l~~~~~~~~~-~~~gtT~d~~~~~~~~-~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~ 251 (436)
T 2hjg_A 174 EVIQFCLIGRPNVGKSSLVNAMLGEERVIVS-NVAGTTRDAVDTSFTY-NQQEFVIVDTAGMRKKGKVYETTEKYSVLRA 251 (436)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHTSTTEEEC----------CCEEEEE-TTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEC-CCCCCEEEEEEEEEEE-CCEEEEEEECCCCCCCCCCCCHHHHHHHHHH
T ss_conf 6727999757998877999997287742314-8999616136899998-9918999979884707554421789999999
Q ss_pred HHHHHHCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHH
Q ss_conf 99987406993199999968998898899999999998704000828999957678899801089
Q 030643 95 VKCIGMAKDGIHAVLVVFSVRSRFSQEEEAALHSLQTLFGKKIFDYMIVVFTGGDELEDNDETLE 159 (174)
Q Consensus 95 ~~~~~~~~~~~~~ii~v~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iv~tk~D~~~~~~~~~~ 159 (174)
... +..+|++++|+|++++.+..+..++..+.+. . .++++++||+|+........+
T Consensus 252 ~~~----~~~ad~~llv~D~~~~~s~~~~~~~~~~~~~---~--~~iiiv~NK~Dl~~~~~~~~~ 307 (436)
T 2hjg_A 252 LKA----IDRSEVVAVVLDGEEGIIEQDKRIAGYAHEA---G--KAVVIVVNKWDAVDKDESTMK 307 (436)
T ss_dssp HHH----HHHCSEEEEEEETTTCCCHHHHHHHHHHHHT---T--CEEEEEEECGGGSCCCTTHHH
T ss_pred HHH----HHHCCEEEEEECCCCCCCHHHHHHHHHHHHC---C--CCEEEEEECCCCCCCCHHHHH
T ss_conf 998----8759999999828767768999999999983---9--967999989127886367899
Done!