Query 030644
Match_columns 174
No_of_seqs 120 out of 1109
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 03:12:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030644.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030644hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvl_A NIFU-like protein; prot 100.0 8.2E-43 2.8E-47 266.8 14.5 126 31-157 2-127 (129)
2 4eb5_C NIFU protein (NIFU-1); 100.0 3.1E-41 1.1E-45 264.9 12.5 126 32-162 1-127 (153)
3 2z7e_A ISCU protein, NIFU-like 100.0 2.3E-40 7.9E-45 261.0 11.7 128 29-159 1-129 (157)
4 2qq4_A Iron-sulfur cluster bio 100.0 1.2E-38 4E-43 246.2 14.7 119 27-150 2-138 (138)
5 1xjs_A NIFU-like protein; SR17 100.0 6.4E-39 2.2E-43 250.1 10.6 123 26-154 4-145 (147)
6 1su0_B NIFU like protein ISCU; 100.0 1.4E-37 4.7E-42 245.4 13.4 119 28-152 5-142 (159)
7 3g0m_A Cysteine desulfuration 93.3 1.7 5.8E-05 32.8 11.6 108 30-151 23-135 (141)
8 1ni7_A ER75, hypothetical prot 88.2 1.7 5.9E-05 33.3 7.2 109 30-152 30-143 (155)
9 3r07_C Putative lipoate-protei 86.2 0.91 3.1E-05 31.6 4.3 66 67-135 16-84 (91)
10 2zkr_r 60S ribosomal protein L 85.6 2.5 8.6E-05 33.4 7.0 69 92-160 20-110 (184)
11 3j21_S 50S ribosomal protein L 81.5 3.8 0.00013 31.4 6.4 61 100-160 31-110 (155)
12 1i4j_A 50S ribosomal protein L 79.2 3.8 0.00013 29.5 5.4 45 101-155 17-61 (110)
13 2ftc_M Mitochondrial ribosomal 78.7 6.2 0.00021 28.3 6.4 44 101-154 13-56 (110)
14 1wlo_A SUFE protein; structura 77.9 9.7 0.00033 28.3 7.5 106 30-152 19-129 (136)
15 3r8s_S 50S ribosomal protein L 77.7 7.4 0.00025 27.9 6.6 50 101-160 17-67 (110)
16 1vq8_R 50S ribosomal protein L 76.9 6.1 0.00021 30.2 6.2 62 98-159 26-107 (155)
17 3u5e_P L20A, YL17, 60S ribosom 70.2 7.2 0.00025 30.7 5.3 61 100-160 28-110 (184)
18 3iz5_V 60S ribosomal protein L 68.6 9.1 0.00031 29.8 5.5 61 100-160 28-111 (171)
19 4a17_Q RPL17, 60S ribosomal pr 63.7 11 0.00038 29.7 5.1 61 100-160 30-112 (183)
20 2zjr_P 50S ribosomal protein L 57.5 6.2 0.00021 29.5 2.5 49 95-153 32-80 (134)
21 2e5a_A Lipoyltransferase 1; li 55.1 17 0.00058 30.7 5.2 43 70-114 269-311 (347)
22 2z2q_B Coat protein gamma; wil 53.3 7.1 0.00024 23.7 1.8 24 5-28 6-29 (44)
23 1fs1_B SKP1, cyclin A/CDK2-ass 52.0 13 0.00045 27.2 3.6 25 97-121 110-134 (141)
24 1dd4_C 50S ribosomal protein L 48.7 24 0.00083 20.9 3.7 29 103-132 5-33 (40)
25 1nov_D Nodamura virus coat pro 48.4 10 0.00035 23.1 1.9 24 5-28 6-29 (44)
26 2ast_A S-phase kinase-associat 43.8 21 0.0007 26.6 3.6 26 96-121 114-139 (159)
27 2p1m_A SKP1-like protein 1A; F 40.1 21 0.0007 26.7 3.0 26 96-121 113-138 (160)
28 3v7d_A Suppressor of kinetocho 37.1 30 0.001 26.2 3.6 22 100-121 125-146 (169)
29 1f8v_D Mature capsid protein g 34.6 7.2 0.00025 23.3 -0.3 24 5-28 6-29 (40)
30 3bbo_U Ribosomal protein L22; 28.3 16 0.00056 29.1 0.7 49 102-160 47-96 (199)
31 2zqe_A MUTS2 protein; alpha/be 27.0 51 0.0018 22.0 3.0 53 108-161 9-63 (83)
32 1zav_U 50S ribosomal protein L 26.7 40 0.0014 18.6 2.0 24 103-127 5-28 (30)
33 1vqz_A Lipoate-protein ligase, 23.7 63 0.0021 27.1 3.6 43 68-114 268-310 (341)
34 3a7r_A Lipoate-protein ligase 23.4 64 0.0022 26.9 3.6 43 68-114 261-303 (337)
35 2k8s_A Thioredoxin; dimer, str 21.6 77 0.0026 19.7 3.0 24 88-111 6-29 (80)
No 1
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=100.00 E-value=8.2e-43 Score=266.82 Aligned_cols=126 Identities=71% Similarity=1.170 Sum_probs=118.3
Q ss_pred hhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcC
Q 030644 31 RLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKG 110 (174)
Q Consensus 31 ~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~G 110 (174)
++|+++||+||+||+|.|.+++++.++++++.+||+|||+|+|||+|+++ |+|+|++|+++||++++||+|+|+++++|
T Consensus 2 ~~Y~~~Ildh~~~P~n~g~l~~~~~~~~~~~~~np~CGD~i~l~l~v~~~-~~I~d~~f~~~GCais~ASaS~~te~i~G 80 (129)
T 3lvl_A 2 SAYSEKVIDHYENPRNVGSFDNNDENVGSGMVGAPACGDVMKLQIKVNDE-GIIEDARFKTYGCGSAIASSSLVTEWVKG 80 (129)
T ss_dssp -CCCHHHHHHHHSCSSBSCCCTTCSSEEEEEEECTTTCCEEEEEEEECSS-SCEEEEEEEEESCHHHHHHHHHHHHHHTT
T ss_pred ccHHHHHHHHHhCCCCCCCCCCCCcceeEEEecCCCCCCEEEEEEEECCC-CeEEEEEEEecCCHHHHHHHHHHHHHHcC
Confidence 58999999999999999999998876667788999999999999999832 89999999999999999999999999999
Q ss_pred CCHHHHHhhhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHhcC
Q 030644 111 KQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT 157 (174)
Q Consensus 111 Ktl~ea~~i~~~~i~e~L~~~~~R~~CA~L~~~AL~~AL~~~~~~~~ 157 (174)
||++||..|..+++.+.|++||+|++|++|+|+||++||.+|+.++.
T Consensus 81 kt~~ea~~i~~~~i~~~L~l~p~r~~Ca~La~~Al~~Al~~y~~k~~ 127 (129)
T 3lvl_A 81 KSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKRE 127 (129)
T ss_dssp CCHHHHHTCCHHHHHHHHTCCGGGGHHHHHHHHHHHHHHHHHHHSCC
T ss_pred CcHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999998753
No 2
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=100.00 E-value=3.1e-41 Score=264.88 Aligned_cols=126 Identities=48% Similarity=0.829 Sum_probs=118.1
Q ss_pred hHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCC
Q 030644 32 LYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGK 111 (174)
Q Consensus 32 lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GK 111 (174)
+|+++||+||+||+|+|.+++++. ++..+||+|||+|+|||+|++ |+|+|++|+++||+++|||+|+|+++++||
T Consensus 1 lY~e~Ildh~~nPrn~G~l~~~d~---~~~~~nP~CGD~i~l~lkv~d--~~I~D~~F~g~GCais~ASaS~mtelv~GK 75 (153)
T 4eb5_C 1 MYSDKVFDHFQNPRNVGKIEDADG---VGTVGNPVCGDLMTIYIKVKD--NRIEDIKFQTFGCAAAIATSSMATEMAKGK 75 (153)
T ss_dssp -CCHHHHHHHHSCSSBSCCSSCSE---EEEEECTTTCCEEEEEEEESS--SBEEEEEEEEESCHHHHHHHHHHHHHHTTC
T ss_pred CcHHHHHHHHhCCCCCCCCCCCCe---EEEeCCCCCCCEEEEEEEecC--CeEEEEEEEEeCcHHHHHHHHHHHHHHcCC
Confidence 699999999999999999999873 567899999999999999987 899999999999999999999999999999
Q ss_pred CHHHHHhhhHHHHHhhc-CCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCcc
Q 030644 112 QMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAA 162 (174)
Q Consensus 112 tl~ea~~i~~~~i~e~L-~~~~~R~~CA~L~~~AL~~AL~~~~~~~~~~~~~ 162 (174)
|++||..|..+++.+.| ++||+|+||++|+|+||++||.+|..++...+..
T Consensus 76 tleEA~~i~~~~i~~~L~glpp~Ri~CA~La~~AL~~Al~~y~~k~~~~~~~ 127 (153)
T 4eb5_C 76 TIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDYFRKNGKIDKI 127 (153)
T ss_dssp BHHHHTTCCHHHHHHHHTCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCCccHH
Confidence 99999999999999999 6999999999999999999999999998776554
No 3
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=100.00 E-value=2.3e-40 Score=260.95 Aligned_cols=128 Identities=48% Similarity=0.804 Sum_probs=118.1
Q ss_pred hhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHH
Q 030644 29 MPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWV 108 (174)
Q Consensus 29 ~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~ 108 (174)
+.++|+++||+||.||+|.|.+++++ ++++.+||+|||+|+|||+|++++|+|+|++|+++||+++|||+|+|++++
T Consensus 1 m~~lY~e~Ildh~~nPrn~G~l~~~d---~~~~~~np~CGD~i~l~lkvd~~~g~I~d~~F~~~GCais~ASaS~mte~v 77 (157)
T 2z7e_A 1 MSFEYNEKVLDHFLNPRNVGVLEDAN---GVGQCGNPACGAAMLFTIKVNPENDVIEDVRFKTFGCGSAIAVSSMLTEMV 77 (157)
T ss_dssp CTTHHHHHHHHHHHSCSSBSCCTTCS---EEEEEEETTTTEEEEEEEEECTTTCBEEEEEEEEESCTTHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHhCCCCCCCCCCCC---eEEEeCCCCCCCEEEEEEEEecCCCeEEEEEEEecCCHHHHHHHHHHHHHH
Confidence 35799999999999999999999887 456789999999999999995122899999999999999999999999999
Q ss_pred cCCCHHHHHhhhHHHHHhhc-CCCCchhHHHHHHHHHHHHHHHHHHHhcCCC
Q 030644 109 KGKQMQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKRTKP 159 (174)
Q Consensus 109 ~GKtl~ea~~i~~~~i~e~L-~~~~~R~~CA~L~~~AL~~AL~~~~~~~~~~ 159 (174)
+|||++||..|..+++.+.| +++|.|++|++|+|+||++||.+|..++..+
T Consensus 78 ~Gkt~~EA~~i~~~~i~e~Lg~l~p~R~~Ca~La~~Al~~Al~~y~~k~~~~ 129 (157)
T 2z7e_A 78 KGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQGRV 129 (157)
T ss_dssp TTSBHHHHHHCCHHHHHHHHTCCCCSSCCTTCCHHHHHHHHHHHHHHTTTCH
T ss_pred cCCcHHHHHHHHhccHHHHhcccCcchhHhHHHHHHHHHHHHHHHHHhcCCc
Confidence 99999999999999988889 5999999999999999999999999887665
No 4
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=100.00 E-value=1.2e-38 Score=246.18 Aligned_cols=119 Identities=32% Similarity=0.553 Sum_probs=107.2
Q ss_pred chhhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHH
Q 030644 27 AAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATE 106 (174)
Q Consensus 27 ~~~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~e 106 (174)
+++.++|+++|++||+||+|+|.+++++ ++++.+||+|||+|+|||+|++ |+|+|++|+++||+++|||+|+|++
T Consensus 2 ~~l~~lY~~~Ildh~~nP~n~G~l~~~~---~~~~~~np~CGD~i~l~l~v~~--~~I~d~~f~~~GCais~ASaS~~te 76 (138)
T 2qq4_A 2 SVLDELYREILLDHYQSPRNFGVLPQAT---KQAGGMNPSCGDQVEVMVLLEG--DTIADIRFQGQGCAISTASASLMTE 76 (138)
T ss_dssp CHHHHHHHHHHHHHHHSCTTBSCCTTCS---EEEEEECTTTCCEEEEEEEEET--TEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCCCCCCCCC---eEEeeCCCCCCCEEEEEEEECC--CEEEEEEEEecCCHHHHHHHHHHHH
Confidence 4678999999999999999999999887 3567899999999999999987 8999999999999999999999999
Q ss_pred HHcCCCHHHHHhhhHHHHH---------------hhc---CCCCchhHHHHHHHHHHHHHHH
Q 030644 107 WVKGKQMQEVLSIKNTEIA---------------KHL---SLPPVKLHCSMLAEDAIKAAVK 150 (174)
Q Consensus 107 l~~GKtl~ea~~i~~~~i~---------------e~L---~~~~~R~~CA~L~~~AL~~AL~ 150 (174)
+++|||++||.+|...++. +.| ..+|+|+||++|+|+||++||+
T Consensus 77 ~i~Gkt~~ea~~i~~~~~~ml~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~~Al~ 138 (138)
T 2qq4_A 77 AVKGKKVAEALELSRKFQAMVVEGAPPDPTLGDLLALQGVAKLPARVKCATLAWHALEEALR 138 (138)
T ss_dssp HHTTSBHHHHHHHHHHHHHHHTTCCCCCGGGGGGGGGGGGGGCGGGHHHHHHHHHHHHHHHC
T ss_pred HHcCCcHHHHHHHHHHHHHHHhCCCCchhhhhHHhhccCcccCcchhhHHHHHHHHHHHHhC
Confidence 9999999999999988632 112 2579999999999999999973
No 5
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=100.00 E-value=6.4e-39 Score=250.09 Aligned_cols=123 Identities=33% Similarity=0.557 Sum_probs=109.6
Q ss_pred CchhhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHH
Q 030644 26 VAAMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVAT 105 (174)
Q Consensus 26 ~~~~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~ 105 (174)
+++++++|+++|++||+||+|+|.+ +++ ++++.+||+|||+|+|||+|++ |+|+|++|+++||+++|||+|+|+
T Consensus 4 ~~~l~~lY~~~Ildh~~nP~n~G~l-~~~---~~~~~~np~CGD~i~l~lkv~~--~~I~d~~f~~~GCais~ASaS~mt 77 (147)
T 1xjs_A 4 NANLDTLYRQVIMDHYKNPRNKGVL-NDS---IVVDMNNPTCGDRIRLTMKLDG--DIVEDAKFEGEGCSISMASASMMT 77 (147)
T ss_dssp CTTTHHHHHHHHHHHHHSCCCCCCC-CSS---EEEEEEETTTTEEEEEEEECCS--SBCCEEEEEEESSHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCCCCCCCC-CCC---eEEeecCCCCCCEEEEEEEECC--CeEEEEEEEecCCHHHHHHHHHHH
Confidence 3568999999999999999999999 887 3567889999999999999987 899999999999999999999999
Q ss_pred HHHcCCCHHHHHhhhHHHHH----------hhc---------CCCCchhHHHHHHHHHHHHHHHHHHH
Q 030644 106 EWVKGKQMQEVLSIKNTEIA----------KHL---------SLPPVKLHCSMLAEDAIKAAVKDYEA 154 (174)
Q Consensus 106 el~~GKtl~ea~~i~~~~i~----------e~L---------~~~~~R~~CA~L~~~AL~~AL~~~~~ 154 (174)
++++|||++||..|...+.. +.| ..+|+|+||++|+|+||++||++|+.
T Consensus 78 e~v~Gkt~~Ea~~i~~~~~~ml~~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~~Al~~~e~ 145 (147)
T 1xjs_A 78 QAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCATLSWKALEKGVAKEEG 145 (147)
T ss_dssp HHHTTSBHHHHHHHHHHHHHHHHHCSCCSSCCCHHHHHHHHHTTSTTTHHHHHHHHHHHHHHSCSTTC
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhCCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHHHHHHHhhc
Confidence 99999999999999987531 112 35799999999999999999977653
No 6
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=100.00 E-value=1.4e-37 Score=245.45 Aligned_cols=119 Identities=35% Similarity=0.544 Sum_probs=106.0
Q ss_pred hhhhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHH
Q 030644 28 AMPRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEW 107 (174)
Q Consensus 28 ~~~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el 107 (174)
+++++|+++|++||+||+|+|.+ +++. +++.+||+|||+|+|||+|++ |+|+|++|+++||+++|||+|+|+++
T Consensus 5 ~l~~lY~~~Ildh~~nP~n~G~l-~~~~---~~~~~np~CGD~i~l~lkv~~--g~I~d~~F~~~GCais~ASaS~mte~ 78 (159)
T 1su0_B 5 KLNHLYMAVVADHSKRPHHHGQL-DGVE---AVQLNNPTCGDVISLTVKFDE--DKIEDIAFAGNGCTISTASSSMMTDA 78 (159)
T ss_dssp -CCHHHHHHHHHHHHSCSSBSCC-TTCC---CEEEECSSSCCEEEEEEEESS--SSEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCCCCC-CCCe---EEeecCCCCCCEEEEEEEECC--CEEEEEEEEecCCHHHHHHHHHHHHH
Confidence 57899999999999999999999 8873 457789999999999999987 89999999999999999999999999
Q ss_pred HcCCCHHHHHhhhHHHHH----------hhc---------CCCCchhHHHHHHHHHHHHHHHHH
Q 030644 108 VKGKQMQEVLSIKNTEIA----------KHL---------SLPPVKLHCSMLAEDAIKAAVKDY 152 (174)
Q Consensus 108 ~~GKtl~ea~~i~~~~i~----------e~L---------~~~~~R~~CA~L~~~AL~~AL~~~ 152 (174)
++|||++||..|...+.. +.| ..+|+|+||++|+|+||++||.++
T Consensus 79 v~Gkt~~Ea~~i~~~f~~ml~~~~~~~~~~L~~l~~l~gv~~~p~R~~Ca~La~~Al~~Al~~~ 142 (159)
T 1su0_B 79 VIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALKEAIKRS 142 (159)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHHHHHTC-
T ss_pred HcCCcHHHHHHHHHHHHHHHhcCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHHHHHHhh
Confidence 999999999999987531 223 246999999999999999999764
No 7
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=93.32 E-value=1.7 Score=32.80 Aligned_cols=108 Identities=9% Similarity=0.049 Sum_probs=71.9
Q ss_pred hhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCc-hhHHHHHHHHHHHH
Q 030644 30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGC-GSAIASSSVATEWV 108 (174)
Q Consensus 30 ~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GC-ais~ASasil~el~ 108 (174)
|+.--+.|+++.+.-.- +++... . -...-+-|-..|=|...++++ |+ +.|.++.= .|...-.+++...+
T Consensus 23 we~Ry~~LI~lgk~Lp~---lpe~~k-~--~~~~V~GCqS~VWl~~~~~~~-g~---l~f~adSDA~IvkGl~alL~~~~ 92 (141)
T 3g0m_A 23 WEEKYLYIIELGQRLAE---LNPQDR-N--PQNTIHGCQSQVWIVMRRNAN-GI---IELQGDSDAAIVKGLMAVVFILY 92 (141)
T ss_dssp HHHHHHHHHHHHHTSCC---CCGGGC-S--GGGBCCSSSSCEEEEEEECTT-SB---EEEEEEESSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCCC---CCHHHc-C--ccCcCCCCccCeeEEEEEcCC-CE---EEEEecCccHHHHHHHHHHHHHH
Confidence 44444567888876443 332211 0 012245699999888888543 64 78887654 57788899999999
Q ss_pred cCCCHHHHHhhhHHHHHhhcC----CCCchhHHHHHHHHHHHHHHHH
Q 030644 109 KGKQMQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIKAAVKD 151 (174)
Q Consensus 109 ~GKtl~ea~~i~~~~i~e~L~----~~~~R~~CA~L~~~AL~~AL~~ 151 (174)
.|+|.+|+..++..++.+.|| +.|.|..= +.++-+.++.
T Consensus 93 ~G~tp~eIl~~d~~~f~~~lGL~~~LSpsR~nG----l~am~~~ik~ 135 (141)
T 3g0m_A 93 HQMTAQDIVHFDVRPWFEKMALAQHLTPSRSQG----LEAMIRAIRA 135 (141)
T ss_dssp TTCBHHHHHHCCCHHHHHHHTCGGGSCHHHHHH----HHHHHHHHHH
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcCchHHHH----HHHHHHHHHH
Confidence 999999999999855556665 67888774 4444444443
No 8
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=88.15 E-value=1.7 Score=33.33 Aligned_cols=109 Identities=15% Similarity=0.055 Sum_probs=69.6
Q ss_pred hhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCc-hhHHHHHHHHHHHH
Q 030644 30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGC-GSAIASSSVATEWV 108 (174)
Q Consensus 30 ~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GC-ais~ASasil~el~ 108 (174)
|+---+.|+++.+.-. .+++.. .. -...-+-|-..|=|+..++++ | .+.|.++.= .|...-++++...+
T Consensus 30 wedRy~~LI~lgk~Lp---~lpe~~-k~--~~~~V~GCqS~VWl~~~~~~d-g---~l~F~adSDA~IvkGL~AlL~~~~ 99 (155)
T 1ni7_A 30 WEDKYRQLIMLGKQLP---ALPDEL-KA--QAKEIAGCENRVWLGYTVAEN-G---KMHFFGDSEGRIVRGLLAVLLTAV 99 (155)
T ss_dssp HHHHHHHHHHHHHHSC---CCCHHH-HH--HSEEECSSSSCEEEECCCCSS-S---CCCCEEEESSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCC---CCChHH-cC--ccCcCCCCccCeeEEEEEcCC-C---EEEEeeCCccHHHHHHHHHHHHHH
Confidence 4444445567766443 233221 10 012235699988777665332 5 577887654 57788899999999
Q ss_pred cCCCHHHHHhhhHHHHHhhcC----CCCchhHHHHHHHHHHHHHHHHH
Q 030644 109 KGKQMQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIKAAVKDY 152 (174)
Q Consensus 109 ~GKtl~ea~~i~~~~i~e~L~----~~~~R~~CA~L~~~AL~~AL~~~ 152 (174)
.|+|.+|+..++.+++.+.|| +.|.|..= +.++-+.++.+
T Consensus 100 ~G~tp~eIl~~d~~~f~~~lGL~~~LSpsR~NG----l~am~~~ik~~ 143 (155)
T 1ni7_A 100 EGKTAAELQAQSPLALFDELGLRAQLSASRSQG----LNALSEAIIAA 143 (155)
T ss_dssp TTCCHHHHHHSCTHHHHHHHTSSSSSCHHHHHH----HHHHHHHHHHH
T ss_pred cCCCHHHHHhCCHHHHHHHcCchhhcCchHHHH----HHHHHHHHHHH
Confidence 999999999999975556665 67888874 45554444443
No 9
>3r07_C Putative lipoate-protein ligase A subunit 2; adenylate-forming enzyme, BI-partite, ATP-binding, transferase; 2.70A {Thermoplasma acidophilum dsm 1728}
Probab=86.23 E-value=0.91 Score=31.63 Aligned_cols=66 Identities=12% Similarity=0.146 Sum_probs=45.2
Q ss_pred CCCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCCCHHHHHhhhHHHHH---hhcCCCCchh
Q 030644 67 CGDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIA---KHLSLPPVKL 135 (174)
Q Consensus 67 CGD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GKtl~ea~~i~~~~i~---e~L~~~~~R~ 135 (174)
.| .|++++.|++ |+|+++++.|+==....-.-.-+.+.++|.+.+++.+...+.+. ...|+.++.+
T Consensus 16 ~G-~v~v~l~v~~--G~I~~vki~GDFf~~p~~~i~~le~~L~G~~~~~i~~~l~~~~~~~~~~~g~~~edi 84 (91)
T 3r07_C 16 KG-LIRVTLDLDG--NRIKDIHISGDFFMFPEDSINRLEDMLRGSSIEKINDIIRDFYNQGVITPGVEPEDF 84 (91)
T ss_dssp SC-EEEEEEEEET--TEEEEEEEEEEBCCBSTTHHHHHHHHHTTSBTTSHHHHHHHHHTTTCBCTTCCTTHH
T ss_pred Cc-EEEEEEEEcC--CEEEEEEEEcccCCCcchhHHHHHHHHCCCCHHHHHHHHHhhhccCceEcCCCHHHH
Confidence 45 9999999988 99999999986332211234667888999998866666665432 1235655544
No 10
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=85.56 E-value=2.5 Score=33.39 Aligned_cols=69 Identities=9% Similarity=0.029 Sum_probs=50.7
Q ss_pred cCchhHHHHHHHHHHHHcCCCHHHHHhhhHHHHHhhcC--------------------CCC--chhHHHHHHHHHHHHHH
Q 030644 92 FGCGSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLS--------------------LPP--VKLHCSMLAEDAIKAAV 149 (174)
Q Consensus 92 ~GCais~ASasil~el~~GKtl~ea~~i~~~~i~e~L~--------------------~~~--~R~~CA~L~~~AL~~AL 149 (174)
.---++-==+-.++.+|.|+++++|..+..+.+...-- ... .-.+++....+.|+.|.
T Consensus 20 ~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~~~~~~GR~PkKaa~~ilklLksA~ 99 (184)
T 2zkr_r 20 SNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAE 99 (184)
T ss_dssp CSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSBEECCHHHHHHHHHHHHHHH
T ss_pred cCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccccccccCCCcHHHHHHHHHHHHHHH
Confidence 33344444567889999999999999999987654321 111 34588999999999999
Q ss_pred HHHHHhcCCCC
Q 030644 150 KDYEAKRTKPS 160 (174)
Q Consensus 150 ~~~~~~~~~~~ 160 (174)
.+.+.+..++|
T Consensus 100 aNAe~kglD~d 110 (184)
T 2zkr_r 100 SNAELKGLDVD 110 (184)
T ss_dssp HHHHHHTSCTT
T ss_pred HHHHHcCCChh
Confidence 99987755554
No 11
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=81.46 E-value=3.8 Score=31.39 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=45.9
Q ss_pred HHHHHHHHHcCCCHHHHHhhhHHHHHhhcCCC-----------------C--chhHHHHHHHHHHHHHHHHHHHhcCCCC
Q 030644 100 SSSVATEWVKGKQMQEVLSIKNTEIAKHLSLP-----------------P--VKLHCSMLAEDAIKAAVKDYEAKRTKPS 160 (174)
Q Consensus 100 Sasil~el~~GKtl~ea~~i~~~~i~e~L~~~-----------------~--~R~~CA~L~~~AL~~AL~~~~~~~~~~~ 160 (174)
=+-.++.+|+|+++++|..+..+.+...--.| . .-.+++....+.|+.|..+.+.+..++|
T Consensus 31 k~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~gr~PkKaa~~ilklL~sA~aNAe~kgld~d 110 (155)
T 3j21_S 31 LAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQKGLDPD 110 (155)
T ss_dssp HHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCSSSCSBEECCHHHHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccccCCCcCcCcHHHHHHHHHHHHHHHHHHHHcCCChh
Confidence 35678999999999999999998665432111 1 2357899999999999999887655443
No 12
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=79.22 E-value=3.8 Score=29.48 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=37.8
Q ss_pred HHHHHHHHcCCCHHHHHhhhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 030644 101 SSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 155 (174)
Q Consensus 101 asil~el~~GKtl~ea~~i~~~~i~e~L~~~~~R~~CA~L~~~AL~~AL~~~~~~ 155 (174)
+-.++++|.||+++||..+... ...+.+....+.|+.|..+.+.+
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~~----------~pkkaa~~v~klL~sA~aNAe~n 61 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNILRY----------TNKRGAYFVAKVLESAAANAVNN 61 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHHH----------CCCTTHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHH----------CCHHHHHHHHHHHHHHHHhHHHh
Confidence 4678999999999999998775 34567888899999999998765
No 13
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=78.68 E-value=6.2 Score=28.29 Aligned_cols=44 Identities=7% Similarity=0.042 Sum_probs=37.0
Q ss_pred HHHHHHHHcCCCHHHHHhhhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHH
Q 030644 101 SSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEA 154 (174)
Q Consensus 101 asil~el~~GKtl~ea~~i~~~~i~e~L~~~~~R~~CA~L~~~AL~~AL~~~~~ 154 (174)
+-.++++|.||+++||..+... ...+.+....+.|+.|..+.+.
T Consensus 13 ~r~va~~IrG~~v~eAl~~L~f----------~pkkaa~~v~klL~sA~aNA~~ 56 (110)
T 2ftc_M 13 MWYLAKLIRGMSIDQALAQLEF----------NDKKGAKIIKEVLLEAQDMAVR 56 (110)
T ss_pred HHHHHHHHcCCcHHHHHHHHHH----------CCHHHHHHHHHHHHHHHHhHHH
Confidence 4578999999999999988764 3467889999999999998775
No 14
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=77.90 E-value=9.7 Score=28.33 Aligned_cols=106 Identities=13% Similarity=0.145 Sum_probs=70.5
Q ss_pred hhhHHHHHHHHHhCCCCCCCCCCCCCccceeeecCCCCCCEEEEEEEEeCCCCceeeeeeeecCc-hhHHHHHHHHHHHH
Q 030644 30 PRLYHENVIDHYNNPRNVGSFEKNDATVGTGLVGAPACGDVMKLQIKVDEETGQIVDACFKTFGC-GSAIASSSVATEWV 108 (174)
Q Consensus 30 ~~lY~e~Ileh~~~Prn~g~l~~~~~~~~~g~~~npsCGD~I~l~l~v~~~~g~I~d~~F~~~GC-ais~ASasil~el~ 108 (174)
++.|+ .|+++.+.-.-. ++.. . ...-+-|-..|=|+..+++ +. ..+.|.++.= .|...-.+++...+
T Consensus 19 e~Ry~-~LI~lgk~Lp~l---pe~~-~----~~~V~GCqS~VWl~~~~~~--~g-~~l~f~~dSDA~IvkGl~alL~~~~ 86 (136)
T 1wlo_A 19 ELRSQ-VLLEYAAKVPPP---PPGV-E----LERVHECQTPFFVHADVEG--GK-VRLYFHVPDEAPTVKAFAGLLREGL 86 (136)
T ss_dssp HHHHH-HHHHHHHTCCCC---CSSC-C----CEECTTSSSCCEEEEEEET--TE-EEEEEECSSCCHHHHHHHHHHHHTT
T ss_pred HHHHH-HHHHHHhhCCCC---Chhh-h----hccCCCCccCeEEEEEEeC--Cc-eEEEEecCCccHHHHHHHHHHHHHH
Confidence 34454 557777654432 2211 0 1124559998888877666 33 2678888664 57788899999999
Q ss_pred cCCCHHHHHhhhHHHHHhhcC----CCCchhHHHHHHHHHHHHHHHHH
Q 030644 109 KGKQMQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIKAAVKDY 152 (174)
Q Consensus 109 ~GKtl~ea~~i~~~~i~e~L~----~~~~R~~CA~L~~~AL~~AL~~~ 152 (174)
.|+|.+|+..++.+ +.+.|| +.|.|..= +.++-+.++.+
T Consensus 87 ~G~tp~eIl~~d~~-~~~~lGL~~~LSpsR~nG----l~am~~~ik~~ 129 (136)
T 1wlo_A 87 EGESPEAVLEVPPG-FYRGYGLEEFFTPLRLRG----LEAALLRLQAQ 129 (136)
T ss_dssp TTCCTTTTTSSCTT-TTTTTTSHHHHTHHHHHH----HHHHHHHHHHH
T ss_pred cCCCHHHHHhCCHH-HHHHcCchhhcCchHHHH----HHHHHHHHHHH
Confidence 99999999999995 566666 57888764 44444444443
No 15
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=77.71 E-value=7.4 Score=27.88 Aligned_cols=50 Identities=14% Similarity=0.329 Sum_probs=39.4
Q ss_pred HHHHHHHHcCCCHHHHHhhhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHh-cCCCC
Q 030644 101 SSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK-RTKPS 160 (174)
Q Consensus 101 asil~el~~GKtl~ea~~i~~~~i~e~L~~~~~R~~CA~L~~~AL~~AL~~~~~~-~~~~~ 160 (174)
+-.++++|.||+++||..+..- ...+++....+.|+.|..+.+.+ ..++|
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~f----------~pkkaa~~v~k~L~sA~aNAe~~~gld~d 67 (110)
T 3r8s_S 17 VRLVADLIRGKKVSQALDILTY----------TNKKAAVLVKKVLESAIANAEHNDGADID 67 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHSSCCTT
T ss_pred HHHHHHHHcCCcHHHHHHHHhh----------CCHHHHHHHHHHHHHHHHhHHHhcCCChh
Confidence 4578999999999999988772 23567888899999999998866 33433
No 16
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=76.90 E-value=6.1 Score=30.25 Aligned_cols=62 Identities=16% Similarity=0.104 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHhhhHHHHHhhc------------------CCCC--chhHHHHHHHHHHHHHHHHHHHhcC
Q 030644 98 IASSSVATEWVKGKQMQEVLSIKNTEIAKHL------------------SLPP--VKLHCSMLAEDAIKAAVKDYEAKRT 157 (174)
Q Consensus 98 ~ASasil~el~~GKtl~ea~~i~~~~i~e~L------------------~~~~--~R~~CA~L~~~AL~~AL~~~~~~~~ 157 (174)
-==+-.++.+|+||++++|..+....+...- +... .-.+.+....+.|+.|..+.+.+..
T Consensus 26 ~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~~gr~PkKaa~~ilklL~sA~aNAe~kgl 105 (155)
T 1vq8_R 26 FKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQGF 105 (155)
T ss_dssp HHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccccccccCCCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3345778999999999999999998665321 1111 3458899999999999999887744
Q ss_pred CC
Q 030644 158 KP 159 (174)
Q Consensus 158 ~~ 159 (174)
++
T Consensus 106 d~ 107 (155)
T 1vq8_R 106 DG 107 (155)
T ss_dssp CG
T ss_pred Ch
Confidence 33
No 17
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=70.25 E-value=7.2 Score=30.72 Aligned_cols=61 Identities=8% Similarity=0.127 Sum_probs=45.6
Q ss_pred HHHHHHHHHcCCCHHHHHhhhHHHHHhhc--------------------CCCC--chhHHHHHHHHHHHHHHHHHHHhcC
Q 030644 100 SSSVATEWVKGKQMQEVLSIKNTEIAKHL--------------------SLPP--VKLHCSMLAEDAIKAAVKDYEAKRT 157 (174)
Q Consensus 100 Sasil~el~~GKtl~ea~~i~~~~i~e~L--------------------~~~~--~R~~CA~L~~~AL~~AL~~~~~~~~ 157 (174)
=+-.++.+|.|+++++|..+..+.+...- |... .-.+++....+.|++|..+.+.+..
T Consensus 28 k~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~~g~~~GR~PkKaa~~ilklLksA~aNAe~kgL 107 (184)
T 3u5e_P 28 NTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAEAKGL 107 (184)
T ss_dssp HHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGGGTCSCEECCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhccCCccCCCchHHHHHHHHHHHHHHHHHHHcCC
Confidence 45678899999999999999998654321 1112 2358899999999999999987655
Q ss_pred CCC
Q 030644 158 KPS 160 (174)
Q Consensus 158 ~~~ 160 (174)
++|
T Consensus 108 D~d 110 (184)
T 3u5e_P 108 DAT 110 (184)
T ss_dssp CTT
T ss_pred Chh
Confidence 544
No 18
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=68.61 E-value=9.1 Score=29.76 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=45.8
Q ss_pred HHHHHHHHHcCCCHHHHHhhhHHHHHhhc---------------------CCCC--chhHHHHHHHHHHHHHHHHHHHhc
Q 030644 100 SSSVATEWVKGKQMQEVLSIKNTEIAKHL---------------------SLPP--VKLHCSMLAEDAIKAAVKDYEAKR 156 (174)
Q Consensus 100 Sasil~el~~GKtl~ea~~i~~~~i~e~L---------------------~~~~--~R~~CA~L~~~AL~~AL~~~~~~~ 156 (174)
=+-.++.+|+|+++++|..+..+.+...- +... --.+++....+.|+.|..+.+.+.
T Consensus 28 k~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPf~r~~~gvg~~~q~~~~~~~~~gr~PkKaa~~ilklL~sA~aNAe~kg 107 (171)
T 3iz5_V 28 NTRETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVKG 107 (171)
T ss_dssp HHHHHHHHSCSCCSHHHHHHHHHHHHTSSCEECSSCCSSCCCCSCCBTTBSCSCEECCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccccccCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 34678899999999999999998655331 1111 145889999999999999998765
Q ss_pred CCCC
Q 030644 157 TKPS 160 (174)
Q Consensus 157 ~~~~ 160 (174)
.++|
T Consensus 108 lD~d 111 (171)
T 3iz5_V 108 LDVD 111 (171)
T ss_dssp CCSS
T ss_pred CChh
Confidence 5554
No 19
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=63.71 E-value=11 Score=29.66 Aligned_cols=61 Identities=8% Similarity=0.064 Sum_probs=44.2
Q ss_pred HHHHHHHHHcCCCHHHHHhhhHHHHHhhc--------------------CCCCc--hhHHHHHHHHHHHHHHHHHHHhcC
Q 030644 100 SSSVATEWVKGKQMQEVLSIKNTEIAKHL--------------------SLPPV--KLHCSMLAEDAIKAAVKDYEAKRT 157 (174)
Q Consensus 100 Sasil~el~~GKtl~ea~~i~~~~i~e~L--------------------~~~~~--R~~CA~L~~~AL~~AL~~~~~~~~ 157 (174)
=+-.+++.|+|+++++|..+..+.+...- |.... -.+++....+.|+.|..+.+.+..
T Consensus 30 k~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~~g~~~Gr~PkKaa~~ilklLksA~aNAe~kgL 109 (183)
T 4a17_Q 30 NTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHEFGRTQGRWPVKSVKVILGLLDNLSANAQAKSL 109 (183)
T ss_dssp HHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGGTTCSBEECCHHHHHHHHHHHHHHHHHTTTTTC
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhhcCCccCcCcHHHHHHHHHHHHHHHHHHHhcCC
Confidence 34678899999999999999998654321 11222 257899999999999999876544
Q ss_pred CCC
Q 030644 158 KPS 160 (174)
Q Consensus 158 ~~~ 160 (174)
++|
T Consensus 110 D~d 112 (183)
T 4a17_Q 110 NTA 112 (183)
T ss_dssp CST
T ss_pred Chh
Confidence 443
No 20
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=57.52 E-value=6.2 Score=29.47 Aligned_cols=49 Identities=10% Similarity=0.119 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHHHcCCCHHHHHhhhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHH
Q 030644 95 GSAIASSSVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYE 153 (174)
Q Consensus 95 ais~ASasil~el~~GKtl~ea~~i~~~~i~e~L~~~~~R~~CA~L~~~AL~~AL~~~~ 153 (174)
-+|-==+-.++++|.||+++||..+... ...+.+....+.|+.|..+.+
T Consensus 32 rvSpkK~r~Va~~IRG~~v~eAl~~L~f----------~pkKaA~~v~klL~sA~aNAe 80 (134)
T 2zjr_P 32 RMSPRKVRLVVDVIRGKSVQDAEDLLRF----------IPRSASEPVAKVLNSAKANAL 80 (134)
T ss_dssp SSCHHHHHHHHHHSTTSBHHHHHHHHHH----------CCCTTHHHHHHHHTTTHHHHT
T ss_pred cCcHHHHHHHHHHHcCCcHHHHHHHHHH----------CcHhHHHHHHHHHHHHHHhHH
Confidence 3444456789999999999999998776 335678888999999998876
No 21
>2e5a_A Lipoyltransferase 1; lipoyl-AMP, ligase; HET: LAQ; 2.10A {Bos taurus} PDB: 3a7u_A
Probab=55.08 E-value=17 Score=30.65 Aligned_cols=43 Identities=14% Similarity=0.128 Sum_probs=36.5
Q ss_pred EEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCCCHH
Q 030644 70 VMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQ 114 (174)
Q Consensus 70 ~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GKtl~ 114 (174)
.|++++.|++ |+|+++++.+.|=........-+.+.++|...+
T Consensus 269 ~v~~~~~v~~--g~I~~~~i~~~~d~~~~~~~~~l~~~L~G~~~~ 311 (347)
T 2e5a_A 269 EIKVFIDVKN--GRIEVCNIEAPDHWLPLEICDQLNSSLIGSKFS 311 (347)
T ss_dssp EEEEEEEEET--TEEEEEEEECCTTTSCHHHHHHHHHHHTTSBSC
T ss_pred EEEEEEEEcC--CEEEEEEEEecCCcCChhHHHHHHHHhCCCCCC
Confidence 7888888888 999999999888777777777788999999775
No 22
>2z2q_B Coat protein gamma; wild type, icosahedral virus, virus/RNA complex; 2.70A {Flock house virus} PDB: 2q26_B 3lob_D 2bbv_D
Probab=53.32 E-value=7.1 Score=23.74 Aligned_cols=24 Identities=38% Similarity=0.541 Sum_probs=21.4
Q ss_pred hhhhHHHHHHHhhhhCCCCccCch
Q 030644 5 GSKRLLRQATAAAVAAPRPVQVAA 28 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (174)
+-||+|.+-..++..-|-|||...
T Consensus 6 rVk~ilks~l~a~S~iPGPVG~~a 29 (44)
T 2z2q_B 6 RVKSIIKSSLAAASNIPGPIGVAA 29 (44)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHH
Confidence 568999999999999999999764
No 23
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=51.96 E-value=13 Score=27.22 Aligned_cols=25 Identities=20% Similarity=0.232 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCCHHHHHhhhH
Q 030644 97 AIASSSVATEWVKGKQMQEVLSIKN 121 (174)
Q Consensus 97 s~ASasil~el~~GKtl~ea~~i~~ 121 (174)
.-.++..++.+++|||.+|..++..
T Consensus 110 ldl~c~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 110 LDVTCKTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHTC
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 3455678899999999999887653
No 24
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=48.71 E-value=24 Score=20.89 Aligned_cols=29 Identities=7% Similarity=0.169 Sum_probs=24.4
Q ss_pred HHHHHHcCCCHHHHHhhhHHHHHhhcCCCC
Q 030644 103 VATEWVKGKQMQEVLSIKNTEIAKHLSLPP 132 (174)
Q Consensus 103 il~el~~GKtl~ea~~i~~~~i~e~L~~~~ 132 (174)
=+.+.++++|+-|+.++... +++.+|.+.
T Consensus 5 ~iie~i~~lTvlE~~eLvk~-leekfGVsa 33 (40)
T 1dd4_C 5 EIIEAIEKLTVSELAELVKK-LEDKFGVTA 33 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHHH-HHHHTCCCS
T ss_pred HHHHHHHhCcHHHHHHHHHH-HHHHHCCCc
Confidence 46789999999999999987 688888754
No 25
>1nov_D Nodamura virus coat proteins; insect virus, icosahedral VIRU; 3.50A {Nodamura virus}
Probab=48.41 E-value=10 Score=23.08 Aligned_cols=24 Identities=33% Similarity=0.457 Sum_probs=21.3
Q ss_pred hhhhHHHHHHHhhhhCCCCccCch
Q 030644 5 GSKRLLRQATAAAVAAPRPVQVAA 28 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (174)
+-||+|.+-.+++..-|-|||...
T Consensus 6 rVk~ilks~l~~aS~iPGPVG~~a 29 (44)
T 1nov_D 6 RVRSILKSGLNFASTIPGPVGVAA 29 (44)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHH
Confidence 568999999999999999999754
No 26
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=43.80 E-value=21 Score=26.58 Aligned_cols=26 Identities=19% Similarity=0.197 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHhhhH
Q 030644 96 SAIASSSVATEWVKGKQMQEVLSIKN 121 (174)
Q Consensus 96 is~ASasil~el~~GKtl~ea~~i~~ 121 (174)
+.-.++..++.+++|||.+|..++..
T Consensus 114 Lld~~c~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 114 LLDVTCKTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp HHHHHHHHHHHHHSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 44556778999999999999887754
No 27
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=40.07 E-value=21 Score=26.74 Aligned_cols=26 Identities=19% Similarity=0.222 Sum_probs=20.8
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHhhhH
Q 030644 96 SAIASSSVATEWVKGKQMQEVLSIKN 121 (174)
Q Consensus 96 is~ASasil~el~~GKtl~ea~~i~~ 121 (174)
..-.++..++.+++|||.+|..++..
T Consensus 113 Lldl~c~~vA~~ikgkt~eeir~~f~ 138 (160)
T 2p1m_A 113 LLDLTCQTVADMIKGKTPEEIRTTFN 138 (160)
T ss_dssp HHHHHHHHHHHTTTTCCHHHHHHHTT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHcC
Confidence 34456788899999999999888754
No 28
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=37.11 E-value=30 Score=26.18 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=18.1
Q ss_pred HHHHHHHHHcCCCHHHHHhhhH
Q 030644 100 SSSVATEWVKGKQMQEVLSIKN 121 (174)
Q Consensus 100 Sasil~el~~GKtl~ea~~i~~ 121 (174)
++-.++.+++|||.+|+.++..
T Consensus 125 ~c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 125 GCKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHcC
Confidence 4567788999999999988754
No 29
>1f8v_D Mature capsid protein gamma; nodavirus, coat protein, nucleoprotein, protein-RNA interactions, RNA duplex, RNA CAGE, gamma polypeptide; 3.00A {Pariacato virus} SCOP: b.121.4.4
Probab=34.62 E-value=7.2 Score=23.27 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=10.6
Q ss_pred hhhhHHHHHHHhhhhCCCCccCch
Q 030644 5 GSKRLLRQATAAAVAAPRPVQVAA 28 (174)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~ 28 (174)
+-||+|.+-.+++..-|-|||...
T Consensus 6 rVk~ilks~l~~aS~iPGPVG~~a 29 (40)
T 1f8v_D 6 GVLRVLNQISGTLSVIPGPVGTIS 29 (40)
T ss_dssp HHHHHHHHTCCC------------
T ss_pred HHHHHHHHHHHHHhcCCCchhHHH
Confidence 468999999999999999998754
No 30
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=28.30 E-value=16 Score=29.09 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=36.8
Q ss_pred HHHHHHHcCCCHHHHHhhhHHHHHhhcCCCCchhHHHHHHHHHHHHHHHHHHHh-cCCCC
Q 030644 102 SVATEWVKGKQMQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK-RTKPS 160 (174)
Q Consensus 102 sil~el~~GKtl~ea~~i~~~~i~e~L~~~~~R~~CA~L~~~AL~~AL~~~~~~-~~~~~ 160 (174)
-.++++|.||++++|..+... .| .+.+....+.|+.|..+.+.. ..+++
T Consensus 47 R~Vad~IRG~~V~eAl~iL~f--------~P--kKaA~~V~KlLkSA~ANAe~n~GLD~d 96 (199)
T 3bbo_U 47 RRVIDQIRGRSYAETLMILEL--------MP--YRACYPIFKLIYSAAANASHNKQFNKA 96 (199)
T ss_dssp STTHHHHTTCBTTTTTTTGGG--------CC--CTTHHHHHHHHHHHTTHHHHTSSCCSS
T ss_pred HHHHHHHCCCcHHHHHHHHHH--------CC--HhHHHHHHHHHHHHHHhHHhccCCChh
Confidence 456889999999999988764 23 336777889999999998763 34443
No 31
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=27.01 E-value=51 Score=21.99 Aligned_cols=53 Identities=13% Similarity=0.267 Sum_probs=34.2
Q ss_pred HcCCCHHHHHhhhHHHHHhhc--CCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCc
Q 030644 108 VKGKQMQEVLSIKNTEIAKHL--SLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSA 161 (174)
Q Consensus 108 ~~GKtl~ea~~i~~~~i~e~L--~~~~~R~~CA~L~~~AL~~AL~~~~~~~~~~~~ 161 (174)
+.|++++||......+|.+.. ++..-++-.-. +--+|++++.+|..+.+.+.+
T Consensus 9 LhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIHGk-G~GvLr~~V~~~L~~~~~V~~ 63 (83)
T 2zqe_A 9 LRGLTVAEALLEVDQALEEARALGLSTLRLLHGK-GTGALRQAIREALRRDKRVES 63 (83)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECCS-TTSHHHHHHHHHHHHCTTEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECC-CchHHHHHHHHHHhcCCceeE
Confidence 459999999999999987654 22111100000 004899999999998765543
No 32
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=26.74 E-value=40 Score=18.65 Aligned_cols=24 Identities=8% Similarity=0.140 Sum_probs=18.5
Q ss_pred HHHHHHcCCCHHHHHhhhHHHHHhh
Q 030644 103 VATEWVKGKQMQEVLSIKNTEIAKH 127 (174)
Q Consensus 103 il~el~~GKtl~ea~~i~~~~i~e~ 127 (174)
=+.+.++++|+-|+.++... +++.
T Consensus 5 ~iie~i~~lTvlEl~eLvk~-lEe~ 28 (30)
T 1zav_U 5 EIIEAIEKLTVSELAELVKK-LEDK 28 (30)
T ss_dssp HHHHHHHHSBHHHHHHHHHH-HHHH
T ss_pred HHHHHHHhCcHHHHHHHHHH-HHHH
Confidence 36788999999999998876 3443
No 33
>1vqz_A Lipoate-protein ligase, putative; class II AARS and biotin synthetases fold, SUFE/NIFU fold, S genomics; HET: MSE; 1.99A {Streptococcus pneumoniae} SCOP: d.224.1.3 d.104.1.3
Probab=23.71 E-value=63 Score=27.13 Aligned_cols=43 Identities=16% Similarity=0.191 Sum_probs=31.6
Q ss_pred CCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCCCHH
Q 030644 68 GDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQ 114 (174)
Q Consensus 68 GD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GKtl~ 114 (174)
+-.|++++.|++ |+|+++++.|+-=. ..-..-+.+.++|...+
T Consensus 268 ~G~v~~~~~v~~--g~I~~~~i~gDf~~--~~~~~~l~~~L~G~~~~ 310 (341)
T 1vqz_A 268 SGKVEVFANVTE--SKIQDIKIYGDFFG--IEDVAAVEDVLRGVKYE 310 (341)
T ss_dssp TEEEEEEEEEET--TEEEEEEEEESCCC--SSCTHHHHHHHTTCBSS
T ss_pred CCcEEEEEEEeC--CEEEEEEEECCcCC--cchHHHHHHHhCCCCCC
Confidence 568999999998 99999999886211 12124567888998765
No 34
>3a7r_A Lipoate-protein ligase A; adenylate-forming enzyme, lipoic acid, ATP-binding, cytoplasm, nucleotide-binding, transferase, lipoyl; HET: LAQ; 2.05A {Escherichia coli} PDB: 1x2h_A* 3a7a_A* 1x2g_A*
Probab=23.44 E-value=64 Score=26.91 Aligned_cols=43 Identities=19% Similarity=0.132 Sum_probs=32.3
Q ss_pred CCEEEEEEEEeCCCCceeeeeeeecCchhHHHHHHHHHHHHcCCCHH
Q 030644 68 GDVMKLQIKVDEETGQIVDACFKTFGCGSAIASSSVATEWVKGKQMQ 114 (174)
Q Consensus 68 GD~I~l~l~v~~~~g~I~d~~F~~~GCais~ASasil~el~~GKtl~ 114 (174)
+-.|++++.|++ |+|+++++.|+-= ......-+.+.++|...+
T Consensus 261 ~g~v~~~~~v~~--g~I~~~~i~gD~~--~~~~~~~l~~~L~G~~~~ 303 (337)
T 3a7r_A 261 WGGVELHFDVEK--GHITRAQVFTDSL--NPAPLEALAGRLQGCLYR 303 (337)
T ss_dssp TEEEEEEEEEET--TEEEEEEEEECCS--CCHHHHHHHHHTTTCBSS
T ss_pred CCcEEEEEEEcC--CEEEEEEEECCCC--CchHHHHHHHHhCCCCCC
Confidence 457999999988 9999999988521 123335678889999775
No 35
>2k8s_A Thioredoxin; dimer, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Nitrosomonas europaea}
Probab=21.65 E-value=77 Score=19.66 Aligned_cols=24 Identities=13% Similarity=0.322 Sum_probs=19.6
Q ss_pred eeeecCchhHHHHHHHHHHHHcCC
Q 030644 88 CFKTFGCGSAIASSSVATEWVKGK 111 (174)
Q Consensus 88 ~F~~~GCais~ASasil~el~~GK 111 (174)
-|.+.+|+.|.....++-+++...
T Consensus 6 ~f~~~~C~~C~~~~~~l~~~~~~~ 29 (80)
T 2k8s_A 6 IFYHAGCPVCVSAEQAVANAIDPS 29 (80)
T ss_dssp EEEECSCHHHHHHHHHHHHHSCTT
T ss_pred EEeCCCCCchHHHHHHHHHHHHhc
Confidence 478899999999999887776544
Done!