BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030645
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2K07|A Chain A, Solution Nmr Structure Of Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 240 bits (613), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 104/162 (64%), Positives = 132/162 (81%), Gaps = 1/162 (0%)
Query: 5 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPE 64
D T+ +++IP+L T AGPRD W QRLKEEY++LI Y + NK+ DNDWFR+ + N E
Sbjct: 3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKE 61
Query: 65 GTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHF 124
GTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT KMYRGGKICLT HF
Sbjct: 62 GTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHF 121
Query: 125 KPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHRD 166
KPLWA+N P+FG+AH + LGL PWLA EIP L+ G+I+H++
Sbjct: 122 KPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKE 163
>pdb|2Z6O|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 240 bits (612), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 104/162 (64%), Positives = 132/162 (81%), Gaps = 1/162 (0%)
Query: 5 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPE 64
D T+ +++IP+L T AGPRD W QRLKEEY++LI Y + NK+ DNDWFR+ + N E
Sbjct: 8 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKE 66
Query: 65 GTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHF 124
GTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT KMYRGGKICLT HF
Sbjct: 67 GTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKMYRGGKICLTDHF 126
Query: 125 KPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHRD 166
KPLWA+N P+FG+AH + LGL PWLA EIP L+ G+I+H++
Sbjct: 127 KPLWARNVPKFGLAHLMALGLGPWLAVEIPDLIQKGVIQHKE 168
>pdb|3EVX|A Chain A, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|B Chain B, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|C Chain C, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
pdb|3EVX|D Chain D, Crystal Structure Of The Human E2-Like Ubiquitin-Fold
Modifier Conjugating Enzyme 1 (Ufc1). Northeast
Structural Genomics Consortium Target Hr41
Length = 175
Score = 236 bits (602), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 103/162 (63%), Positives = 130/162 (80%), Gaps = 1/162 (0%)
Query: 5 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPE 64
D T+ +++IP+L T AGPRD W QRLKEEY++LI Y + NK+ DNDWFR+ + N E
Sbjct: 3 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKE 61
Query: 65 GTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHF 124
GTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT K YRGGKICLT HF
Sbjct: 62 GTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKXYRGGKICLTDHF 121
Query: 125 KPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHRD 166
KPLWA+N P+FG+AH LGL PWLA EIP L+ G+I+H++
Sbjct: 122 KPLWARNVPKFGLAHLXALGLGPWLAVEIPDLIQKGVIQHKE 163
>pdb|2Z6P|A Chain A, Crystal Structure Of The Ufc1, Ufm1 Conjugating Enzyme 1
Length = 172
Score = 236 bits (601), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 103/162 (63%), Positives = 130/162 (80%), Gaps = 1/162 (0%)
Query: 5 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPE 64
D T+ +++IP+L T AGPRD W QRLKEEY++LI Y + NK+ DNDWFR+ + N E
Sbjct: 8 DEATRRVVSEIPVLKTNAGPRDRELWVQRLKEEYQSLIRYVENNKNADNDWFRLES-NKE 66
Query: 65 GTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHF 124
GTRW GKCWY+H+LLKYEFD++FDIP+TYP TAPE+ +P+LDGKT K YRGGKICLT HF
Sbjct: 67 GTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIAVPELDGKTAKXYRGGKICLTDHF 126
Query: 125 KPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHRD 166
KPLWA+N P+FG+AH LGL PWLA EIP L+ G+I+H++
Sbjct: 127 KPLWARNVPKFGLAHLXALGLGPWLAVEIPDLIQKGVIQHKE 168
>pdb|3KPA|A Chain A, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
pdb|3KPA|B Chain B, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
pdb|3KPA|C Chain C, Ubiquitin Fold Modifier Conjugating Enzyme From Leishmania
Major (Probable)
Length = 168
Score = 206 bits (525), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 92/159 (57%), Positives = 117/159 (73%), Gaps = 1/159 (0%)
Query: 5 DPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPE 64
+P+ K ++++IPLL TKAGPRDG WT RLKEEY +LI Y + NK++D+ WF + + NP+
Sbjct: 10 EPSVKESVSRIPLLKTKAGPRDGDKWTARLKEEYASLITYVEHNKASDSHWFHLES-NPQ 68
Query: 65 GTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHF 124
GTRW G CW + KYEF+ FDIPVTYP PE+ LP+L+GKT K YRGGKIC T HF
Sbjct: 69 GTRWYGTCWTYYKNEKYEFEXNFDIPVTYPQAPPEIALPELEGKTVKXYRGGKICXTTHF 128
Query: 125 KPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIK 163
PLWA+N P FGI+H L LGL PWL+ E+P V+ G +K
Sbjct: 129 FPLWARNVPYFGISHVLALGLGPWLSIEVPAXVEEGYLK 167
>pdb|1SPP|A Chain A, The Crystal Structures Of Two Members Of The
Spermadhesin Family Reveal The Folding Of The Cub
Domain
Length = 109
Score = 27.7 bits (60), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/52 (25%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Query: 20 TKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGK 71
T GP+ WT ++ +YK L++ +N + ++ + P G++ GK
Sbjct: 19 TYKGPKTECVWTLQVDPKYKLLVSIPTLNLTCGKEYVEVLEGAP-GSKSLGK 69
>pdb|2QT3|A Chain A, Crystal Structure Of N-Isopropylammelide
Isopropylaminohydrolase Atzc From Pseudomonas Sp. Strain
Adp Complexed With Zn
pdb|2QT3|B Chain B, Crystal Structure Of N-Isopropylammelide
Isopropylaminohydrolase Atzc From Pseudomonas Sp. Strain
Adp Complexed With Zn
Length = 403
Score = 26.9 bits (58), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 33/86 (38%), Gaps = 21/86 (24%)
Query: 79 LKYEFDLQFDIPVTYPATAPELELPQLDGKT-QKMYRGGKICLTVHFKPLWAKNCPRFGI 137
L E+D+ D + T + +L KT + Y+G R
Sbjct: 206 LAKEYDVDIDYHIHDIGTVGVYSINRLAQKTIENGYKG------------------RVTT 247
Query: 138 AHALCLGLAP--WLAAEIPILVDSGM 161
+HA C AP WL IP+ DSGM
Sbjct: 248 SHAWCFADAPSEWLDEAIPLYKDSGM 273
>pdb|1UKX|A Chain A, Solution Structure Of The Rwd Domain Of Mouse Gcn2
Length = 137
Score = 26.6 bits (57), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 82 EFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPR---FGIA 138
+ +L+ P TYP PE++L G + + L H + L K C F +A
Sbjct: 64 QVELRVKCPPTYPDVVPEIDLKNAKGLSNESVN----LLKSHLEELAKKQCGEVMIFELA 119
Query: 139 H 139
H
Sbjct: 120 H 120
>pdb|3HDC|A Chain A, The Crystal Structure Of Thioredoxin Protein From
Geobacter Metallireducens
Length = 158
Score = 26.2 bits (56), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 24/41 (58%), Gaps = 7/41 (17%)
Query: 95 ATAPELELPQLDGKTQKM--YRGGKICLTVHFKPLWAKNCP 133
A AP +LP L G+ + + YR GKI L V+F WA CP
Sbjct: 19 ALAPNFKLPTLSGENKSLAQYR-GKIVL-VNF---WASWCP 54
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,812,214
Number of Sequences: 62578
Number of extensions: 249071
Number of successful extensions: 440
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 12
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)