Query 030645
Match_columns 174
No_of_seqs 81 out of 83
Neff 3.0
Searched_HMMs 46136
Date Fri Mar 29 02:27:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030645.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030645hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF08694 UFC1: Ubiquitin-fold 100.0 6E-102 1E-106 625.2 11.1 161 6-167 1-161 (161)
2 KOG3357 Uncharacterized conser 100.0 7E-100 1E-104 611.9 10.7 166 3-169 1-166 (167)
3 COG5078 Ubiquitin-protein liga 99.7 4.9E-18 1.1E-22 136.7 9.0 93 31-131 7-105 (153)
4 KOG0417 Ubiquitin-protein liga 99.7 3E-17 6.6E-22 132.5 7.0 93 32-132 4-101 (148)
5 PLN00172 ubiquitin conjugating 99.6 1.2E-15 2.7E-20 119.5 9.5 103 31-141 3-110 (147)
6 PTZ00390 ubiquitin-conjugating 99.6 2.1E-15 4.5E-20 119.2 9.5 92 31-130 4-100 (152)
7 PF00179 UQ_con: Ubiquitin-con 99.6 1E-14 2.2E-19 110.5 7.7 91 33-131 1-98 (140)
8 cd00195 UBCc Ubiquitin-conjuga 99.5 6.4E-14 1.4E-18 106.6 8.8 90 32-129 2-97 (141)
9 KOG0418 Ubiquitin-protein liga 99.4 9E-13 2E-17 110.9 6.5 95 31-129 5-104 (200)
10 smart00212 UBCc Ubiquitin-conj 99.3 1.9E-11 4E-16 93.4 8.4 88 32-127 1-95 (145)
11 KOG0419 Ubiquitin-protein liga 99.1 3.3E-10 7.1E-15 91.9 6.7 91 31-129 6-101 (152)
12 KOG0424 Ubiquitin-protein liga 99.0 9.8E-10 2.1E-14 89.9 7.5 103 31-141 6-120 (158)
13 KOG0421 Ubiquitin-protein liga 99.0 8.3E-10 1.8E-14 90.9 6.4 99 26-132 26-129 (175)
14 KOG0422 Ubiquitin-protein liga 99.0 6.5E-10 1.4E-14 90.6 5.7 89 31-127 4-98 (153)
15 KOG0426 Ubiquitin-protein liga 98.9 2.2E-09 4.8E-14 87.6 6.7 83 31-121 6-91 (165)
16 KOG0427 Ubiquitin conjugating 98.9 1.1E-08 2.3E-13 83.5 8.4 95 30-132 16-115 (161)
17 KOG0416 Ubiquitin-protein liga 98.5 2.9E-07 6.3E-12 77.3 5.7 69 62-130 26-99 (189)
18 KOG0425 Ubiquitin-protein liga 98.4 7.9E-07 1.7E-11 73.8 6.9 80 34-121 10-92 (171)
19 KOG0894 Ubiquitin-protein liga 98.3 2.6E-06 5.6E-11 73.8 7.5 90 30-131 6-105 (244)
20 KOG0428 Non-canonical ubiquiti 98.1 8E-06 1.7E-10 72.4 6.0 92 30-132 12-111 (314)
21 KOG0420 Ubiquitin-protein liga 97.9 6.6E-06 1.4E-10 69.1 3.0 61 80-141 75-138 (184)
22 KOG0895 Ubiquitin-conjugating 97.1 0.0017 3.6E-08 66.0 8.2 108 20-134 273-387 (1101)
23 KOG0423 Ubiquitin-protein liga 97.1 0.0007 1.5E-08 57.8 4.3 85 49-142 23-113 (223)
24 PF14461 Prok-E2_B: Prokaryoti 96.8 0.0031 6.7E-08 48.5 5.3 59 79-138 34-94 (133)
25 KOG0429 Ubiquitin-conjugating 95.8 0.047 1E-06 48.1 8.0 98 33-132 17-117 (258)
26 KOG0895 Ubiquitin-conjugating 95.0 0.023 5.1E-07 58.1 3.8 83 29-121 851-939 (1101)
27 PF05773 RWD: RWD domain; Int 95.0 0.087 1.9E-06 37.2 5.7 65 31-103 3-71 (113)
28 COG3449 DNA gyrase inhibitor [ 93.6 0.17 3.6E-06 41.8 5.4 71 30-111 21-95 (154)
29 KOG0896 Ubiquitin-conjugating 92.8 0.1 2.2E-06 42.6 3.0 56 63-118 36-93 (138)
30 smart00591 RWD domain in RING 92.0 0.16 3.5E-06 35.7 2.8 24 80-103 40-63 (107)
31 PF05743 UEV: UEV domain; Int 87.3 2 4.3E-05 33.2 5.8 62 63-126 25-99 (121)
32 PF14462 Prok-E2_E: Prokaryoti 52.2 12 0.00026 29.8 2.2 29 78-106 39-69 (122)
33 PF06113 BRE: Brain and reprod 42.9 25 0.00054 32.4 3.1 29 75-103 300-328 (333)
34 KOG0897 Predicted ubiquitin-co 42.1 16 0.00035 29.5 1.6 61 82-144 11-78 (122)
35 PF00339 Arrestin_N: Arrestin 31.9 32 0.0007 24.9 1.7 14 80-93 94-107 (149)
36 KOG4018 Uncharacterized conser 30.2 44 0.00096 29.2 2.5 22 82-103 50-71 (215)
37 PF09606 Med15: ARC105 or Med1 28.4 19 0.00042 36.5 0.0 87 16-102 641-735 (799)
38 PF08872 KGK: KGK domain; Int 26.0 1.6E+02 0.0034 23.1 4.7 22 63-92 74-96 (114)
39 PF09765 WD-3: WD-repeat regio 24.5 55 0.0012 29.1 2.1 22 82-103 138-159 (291)
40 PF10981 DUF2788: Protein of u 24.4 34 0.00073 24.0 0.6 20 127-146 18-38 (52)
41 COG4957 Predicted transcriptio 24.3 35 0.00076 28.4 0.8 46 53-102 74-123 (148)
42 PRK10016 DNA gyrase inhibitor; 23.6 1.6E+02 0.0034 22.4 4.2 67 11-95 7-77 (156)
43 PF03920 TLE_N: Groucho/TLE N- 22.2 76 0.0017 26.1 2.4 19 30-48 24-42 (135)
44 PRK11727 23S rRNA mA1618 methy 20.7 29 0.00063 31.1 -0.4 58 32-98 29-87 (321)
45 PF09654 DUF2396: Protein of u 20.1 1.9E+02 0.004 24.5 4.2 54 34-95 91-156 (161)
No 1
>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes. Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.
Probab=100.00 E-value=6.4e-102 Score=625.23 Aligned_cols=161 Identities=76% Similarity=1.364 Sum_probs=134.7
Q ss_pred chhhhhhccccceeccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeeeeecccceeEEE
Q 030645 6 PNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDL 85 (174)
Q Consensus 6 ~~~~~~~~~ipl~~~~agprd~~~w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~~~~~~kyeF~l 85 (174)
++||++|++||||+|||||||+++|++||||||++||+||++||++|||||+|+| |++||||+|+|||+|++.+|||+|
T Consensus 1 ~~tk~t~~~IPll~~~AGPrd~~~W~~RLKEEy~aLI~Yv~~nK~~DndWF~les-n~~GT~W~GkCW~~h~l~kYEF~~ 79 (161)
T PF08694_consen 1 EATKSTVEKIPLLKTKAGPRDGDLWVQRLKEEYQALIKYVENNKENDNDWFRLES-NKEGTRWFGKCWYIHNLLKYEFDL 79 (161)
T ss_dssp -HHHHHHHCS---SS---TTSCHHHHHHHHHHHHHHHHHHHHHHHTT---EEEEE--TTSSEEEEEEEEEETTEEEEEEE
T ss_pred CchHHHHHhCccccccCCCCCHHHHHHHHHHHHHHHHHHHHhcccccCCeEEecc-CCCCCccccEEEEEeeeeeEEEee
Confidence 4799999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred EEecCCCCCCCCCeeecCCCCCcccccccCceeeccCCCcccccccCCchhHHHHHhhcccchhhhhhhhhHhhCccccc
Q 030645 86 QFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMIKHR 165 (174)
Q Consensus 86 efdIP~tYP~tpPeI~fPeldgkt~kmYrgGkICLddHf~PlW~~n~p~fgiaha~algl~pwla~eip~lv~~g~i~~~ 165 (174)
|||||+|||+|||||++|||||||+|||||||||||+||+|||+|||||||||||||||||||||||||+||++|+|+|+
T Consensus 80 eFdIP~tYP~t~pEi~lPeLdGKTaKMYRGGkIClt~HFkPLWakN~PkfGIaHalaLGL~PWLA~EiP~Lv~~g~i~~k 159 (161)
T PF08694_consen 80 EFDIPVTYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWAKNVPKFGIAHALALGLGPWLAVEIPDLVEKGVIKHK 159 (161)
T ss_dssp EEE--TTTTTS----B-GGGTTT-SSBCCCCBB---TTHHHHHHCTTTT--HHHHHHHTHHHHHHHHHHHHHHTTSSS-S
T ss_pred ecCCCccCCCCCcceeccccCCchhhhhcCceEeeecccchhhhhcCCchhHHHHHHhccchhhhhhhHHHHHcCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cC
Q 030645 166 DD 167 (174)
Q Consensus 166 ~~ 167 (174)
++
T Consensus 160 ~~ 161 (161)
T PF08694_consen 160 ED 161 (161)
T ss_dssp EC
T ss_pred CC
Confidence 75
No 2
>KOG3357 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=6.7e-100 Score=611.88 Aligned_cols=166 Identities=73% Similarity=1.351 Sum_probs=164.4
Q ss_pred CCCchhhhhhccccceeccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeeeeeccccee
Q 030645 3 GWDPNTKSTLTQIPLLSTKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYE 82 (174)
Q Consensus 3 ~~d~~~~~~~~~ipl~~~~agprd~~~w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~~~~~~kye 82 (174)
|||++||++|+.||||+|+|||||++.|+|||||||++||+||+|||++|||||+||| |++||||+|||||+||+++||
T Consensus 1 ~~d~~tk~tl~~ipll~tkagprd~~~wvqrlkeey~sli~yvqnnk~~d~dwfrles-n~egtrwfgkcwy~hnllkye 79 (167)
T KOG3357|consen 1 MWDDATKSTLSRIPLLKTKAGPRDGDLWVQRLKEEYQSLIAYVQNNKSNDNDWFRLES-NKEGTRWFGKCWYVHNLLKYE 79 (167)
T ss_pred CCCchhhhHhhhCcceeccCCCccchHHHHHHHHHHHHHHHHHHhCcccCCcceEecc-CccccceehhhhHhhhhhhhe
Confidence 7999999999999999999999999999999999999999999999999999999998 999999999999999999999
Q ss_pred EEEEEecCCCCCCCCCeeecCCCCCcccccccCceeeccCCCcccccccCCchhHHHHHhhcccchhhhhhhhhHhhCcc
Q 030645 83 FDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLTVHFKPLWAKNCPRFGIAHALCLGLAPWLAAEIPILVDSGMI 162 (174)
Q Consensus 83 F~lefdIP~tYP~tpPeI~fPeldgkt~kmYrgGkICLddHf~PlW~~n~p~fgiaha~algl~pwla~eip~lv~~g~i 162 (174)
||+|||||.|||.|+|||++|||||||+||||||||||++||+|||+|||||||||||||||||||||||||+||++|+|
T Consensus 80 fdvefdipityp~tapeialpeldgktakmyrggkiclt~hfkplwarn~pkfgiaha~algl~pwlaveipdliekg~i 159 (167)
T KOG3357|consen 80 FDVEFDIPITYPTTAPEIALPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGIAHAMALGLAPWLAVEIPDLIEKGAI 159 (167)
T ss_pred eeeeeccccccCCCCccccccccCchhhhhhcCceEeeccccchhhhhcCcchhHHHHHHhccchhhhhhhhHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCC
Q 030645 163 KHRDDVS 169 (174)
Q Consensus 163 ~~~~~~~ 169 (174)
+||++.+
T Consensus 160 ~~k~k~~ 166 (167)
T KOG3357|consen 160 QHKEKAA 166 (167)
T ss_pred cchhhcc
Confidence 9999865
No 3
>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=4.9e-18 Score=136.70 Aligned_cols=93 Identities=17% Similarity=0.272 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCC-CCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCC
Q 030645 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAANP-EGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDG 107 (174)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~-dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldg 107 (174)
.+||.+||+.|.+ +...-|+..|+++ |.+.|++.+-| .++|++-.|.+.+++|..||..||.|+|-.-..
T Consensus 7 ~~RL~kE~~~l~~-------~~~~~~~a~p~~d~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~ 79 (153)
T COG5078 7 LKRLLKELKKLQK-------DPPPGISAGPVDDDNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIF 79 (153)
T ss_pred HHHHHHHHHHHhc-------CCCCceEEEECCCCcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCc
Confidence 5799999999887 5578899999887 99999999999 999999999999999999999999999999999
Q ss_pred cccccccCceeecc---CCCccccccc
Q 030645 108 KTQKMYRGGKICLT---VHFKPLWAKN 131 (174)
Q Consensus 108 kt~kmYrgGkICLd---dHf~PlW~~n 131 (174)
|+|+. .+|+|||| ++|+|+|+-.
T Consensus 80 HPNV~-~~G~vCLdIL~~~WsP~~~l~ 105 (153)
T COG5078 80 HPNVD-PSGNVCLDILKDRWSPVYTLE 105 (153)
T ss_pred CCCcC-CCCCChhHHHhCCCCccccHH
Confidence 99999 99999997 9999999754
No 4
>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=3e-17 Score=132.52 Aligned_cols=93 Identities=16% Similarity=0.230 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCcc
Q 030645 32 QRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKT 109 (174)
Q Consensus 32 ~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgkt 109 (174)
+||.+||+.|.+ .+-.-.+..|+.+|...|++.+-| ++||++..|.|+|.+|..||+.||.|+|-...-|+
T Consensus 4 ~RI~kE~~~l~~-------dp~~~~~~~~~~dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHP 76 (148)
T KOG0417|consen 4 KRIIKELQDLLR-------DPPPGCSAGPVGDNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHP 76 (148)
T ss_pred HHHHHHHHHHhc-------CCCCCCccCCCCCceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccC
Confidence 499999997664 233444555767899999999999 99999999999999999999999999999889999
Q ss_pred cccccCceeecc---CCCcccccccC
Q 030645 110 QKMYRGGKICLT---VHFKPLWAKNC 132 (174)
Q Consensus 110 ~kmYrgGkICLd---dHf~PlW~~n~ 132 (174)
|+. +.|+|||| ++|+|+|+-+.
T Consensus 77 NI~-~~G~IclDILk~~WsPAl~i~~ 101 (148)
T KOG0417|consen 77 NID-SNGRICLDILKDQWSPALTISK 101 (148)
T ss_pred CcC-ccccchHHhhhccCChhhHHHH
Confidence 999 99999999 99999998664
No 5
>PLN00172 ubiquitin conjugating enzyme; Provisional
Probab=99.64 E-value=1.2e-15 Score=119.48 Aligned_cols=103 Identities=20% Similarity=0.274 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCc
Q 030645 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGK 108 (174)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgk 108 (174)
.+||.+||+.|++ +....|++.+.++|.+.|.+.+-| .++|++..|.+.|.+|..||..||.|+|-..-.|
T Consensus 3 ~~Rl~kE~~~l~~-------~~~~~~~~~~~~~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H 75 (147)
T PLN00172 3 TKRIQKEHKDLLK-------DPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYH 75 (147)
T ss_pred HHHHHHHHHHHHh-------CCCCCeEEEECCCChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCccc
Confidence 3799999999987 223457888877999999999998 8999999999999999999999999999877789
Q ss_pred ccccccCceeecc---CCCcccccccCCchhHHHHH
Q 030645 109 TQKMYRGGKICLT---VHFKPLWAKNCPRFGIAHAL 141 (174)
Q Consensus 109 t~kmYrgGkICLd---dHf~PlW~~n~p~fgiaha~ 141 (174)
+|+. .+|+|||+ +.|+|.|+-..=--+|...|
T Consensus 76 PNv~-~~G~iCl~il~~~W~p~~ti~~il~~i~~ll 110 (147)
T PLN00172 76 PNIN-SNGSICLDILRDQWSPALTVSKVLLSISSLL 110 (147)
T ss_pred ceEC-CCCEEEcccCcCCCCCcCcHHHHHHHHHHHH
Confidence 9975 68999998 78999986544444444444
No 6
>PTZ00390 ubiquitin-conjugating enzyme; Provisional
Probab=99.62 E-value=2.1e-15 Score=119.17 Aligned_cols=92 Identities=14% Similarity=0.170 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCc
Q 030645 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGK 108 (174)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgk 108 (174)
.+||.+||+.|.+ +..+.|++.++++|...|.+.+-| +++|++..|.+.|.+|.+||..||.|+|.....|
T Consensus 4 ~kRl~~E~~~l~~-------~~~~~i~~~~~~~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~H 76 (152)
T PTZ00390 4 SKRIEKETQNLAN-------DPPPGIKAEPDPGNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYH 76 (152)
T ss_pred HHHHHHHHHHHHh-------CCCCCeEEEECCCCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCee
Confidence 4799999999875 234568888878999999999998 8999999999999999999999999999888899
Q ss_pred ccccccCceeecc---CCCcccccc
Q 030645 109 TQKMYRGGKICLT---VHFKPLWAK 130 (174)
Q Consensus 109 t~kmYrgGkICLd---dHf~PlW~~ 130 (174)
+|+- .+|+|||+ +.|+|.|+-
T Consensus 77 PNV~-~~G~iCl~iL~~~W~p~~ti 100 (152)
T PTZ00390 77 PNID-KLGRICLDILKDKWSPALQI 100 (152)
T ss_pred ceEC-CCCeEECccCcccCCCCCcH
Confidence 9984 68999998 779998743
No 7
>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]. Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....
Probab=99.56 E-value=1e-14 Score=110.52 Aligned_cols=91 Identities=19% Similarity=0.302 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCceEEeeCCC-CCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCcc
Q 030645 33 RLKEEYKALIAYTQMNKSNDNDWFRISAANP-EGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKT 109 (174)
Q Consensus 33 RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~-dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgkt 109 (174)
||.+||+.|.+ +....|.+.+.++ +...|.+.+-+ +++|++..|.+++.+|.+||..||.|.|-....|+
T Consensus 1 Rl~~E~~~l~~-------~~~~~~~~~~~~~~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HP 73 (140)
T PF00179_consen 1 RLQKELKELQK-------NPPPGISVQPSEDDNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHP 73 (140)
T ss_dssp HHHHHHHHHHH-------SHTTTEEEEEESTTETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBT
T ss_pred CHHHHHHHHhh-------CCCCCEEEEECCCCChheEEEEEeccCccceecccccccccccccccccccccccccccccc
Confidence 99999998776 3457787777664 89999999998 99999999999999999999999999999878999
Q ss_pred cccccCceeecc----CCCccccccc
Q 030645 110 QKMYRGGKICLT----VHFKPLWAKN 131 (174)
Q Consensus 110 ~kmYrgGkICLd----dHf~PlW~~n 131 (174)
|+. .+|+|||+ ++|+|.+.-.
T Consensus 74 ni~-~~G~icl~~l~~~~W~p~~~i~ 98 (140)
T PF00179_consen 74 NID-ENGRICLDILNPESWSPSYTIE 98 (140)
T ss_dssp TB--TTSBBGHGGGTTTTC-TTSHHH
T ss_pred ccc-ccccchhhhhhcccCCcccccc
Confidence 999 99999996 4677765543
No 8
>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain. This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.
Probab=99.52 E-value=6.4e-14 Score=106.55 Aligned_cols=90 Identities=22% Similarity=0.358 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCcc
Q 030645 32 QRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKT 109 (174)
Q Consensus 32 ~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgkt 109 (174)
+||.+||+.|.+.. ...|++.+.+.+.++|.+.+.+ .++|.+-.|.+++.+|..||.+||.|+|...--|+
T Consensus 2 ~Rl~~E~~~l~~~~-------~~~~~v~~~~~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~Hp 74 (141)
T cd00195 2 KRLQKELKDLKKDP-------PSGISAEPVEENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHP 74 (141)
T ss_pred chHHHHHHHHHhCC-------CCCeEEEECCCChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccC
Confidence 69999999987522 2557888877899999999998 89999999999999999999999999997666899
Q ss_pred cccccCceeecc---CC-Cccccc
Q 030645 110 QKMYRGGKICLT---VH-FKPLWA 129 (174)
Q Consensus 110 ~kmYrgGkICLd---dH-f~PlW~ 129 (174)
++- .+|+|||+ .+ |+|.++
T Consensus 75 nV~-~~G~icl~~l~~~~W~p~~~ 97 (141)
T cd00195 75 NVD-ENGKICLSILKTHGWSPAYT 97 (141)
T ss_pred CCC-CCCCCchhhcCCCCcCCcCc
Confidence 998 99999998 44 777554
No 9
>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=9e-13 Score=110.86 Aligned_cols=95 Identities=17% Similarity=0.216 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCc
Q 030645 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGK 108 (174)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgk 108 (174)
.+|+++|.+...+ +.+--..-+.++.+|.+.++=.|.+-| ++||++-.|.|.|+||.+||..||++.|-.-.=|
T Consensus 5 ~~ri~~e~k~v~~----~~eisq~~I~ve~vn~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~F~TkIwH 80 (200)
T KOG0418|consen 5 FKRINREQKEVLD----DPEISQAGIIVEMVNENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVKFITKIWH 80 (200)
T ss_pred HHHHHHHHHHhcc----ChhhhhcceEEEEccCChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCceeeeeeeec
Confidence 5799999887443 322225678999999999999999999 9999999999999999999999999999888889
Q ss_pred ccccccCceeecc---CCCccccc
Q 030645 109 TQKMYRGGKICLT---VHFKPLWA 129 (174)
Q Consensus 109 t~kmYrgGkICLd---dHf~PlW~ 129 (174)
+|+--.+|.|||| +||+|...
T Consensus 81 PnVSs~tGaICLDilkd~Wa~slT 104 (200)
T KOG0418|consen 81 PNVSSQTGAICLDILKDQWAASLT 104 (200)
T ss_pred CCCCcccccchhhhhhcccchhhh
Confidence 9999999999997 99999754
No 10
>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues. Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.
Probab=99.27 E-value=1.9e-11 Score=93.44 Aligned_cols=88 Identities=22% Similarity=0.305 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEeeCC-CCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCc
Q 030645 32 QRLKEEYKALIAYTQMNKSNDNDWFRISAAN-PEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGK 108 (174)
Q Consensus 32 ~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n-~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgk 108 (174)
+||.+||+.|.+-. ..-|++.++. ++...|.+.+-| .++|.+..|.+.+.+|..||.+||.|.|-..--|
T Consensus 1 ~Rl~~E~~~~~~~~-------~~~~~v~~~~~~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~H 73 (145)
T smart00212 1 KRLLKELKELLKDP-------PPGISAYPVDEDNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYH 73 (145)
T ss_pred ChHHHHHHHHHhCC-------CCCeEEEECCCCChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceE
Confidence 49999999987632 2346555544 489999999987 8999999999999999999999999999766679
Q ss_pred ccccccCceeecc----CCCccc
Q 030645 109 TQKMYRGGKICLT----VHFKPL 127 (174)
Q Consensus 109 t~kmYrgGkICLd----dHf~Pl 127 (174)
+++. .+|+|||+ +.|+|.
T Consensus 74 p~i~-~~G~icl~~l~~~~W~p~ 95 (145)
T smart00212 74 PNVD-SSGEICLDILKQEKWSPA 95 (145)
T ss_pred eeEC-CCCCEehhhcCCCCCCCC
Confidence 9986 59999997 355554
No 11
>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.3e-10 Score=91.94 Aligned_cols=91 Identities=18% Similarity=0.343 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCc
Q 030645 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGK 108 (174)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgk 108 (174)
..||.+.++.|++ +..--++-+|++.+--.|.+.+-| .+|+++-.|+|.++.+++||..||-++|-....|
T Consensus 6 rrrLmrDfkrlqe-------dpp~gisa~P~~~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs~mFH 78 (152)
T KOG0419|consen 6 RRRLMRDFKRLQE-------DPPAGISAAPVENNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVSKMFH 78 (152)
T ss_pred HHHHHHHHHHhhc-------CCCCCccCCCCccceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeeeeccC
Confidence 3578888877664 556777888988999999999999 9999999999999999999999999999999999
Q ss_pred ccccccCceeecc---CCCccccc
Q 030645 109 TQKMYRGGKICLT---VHFKPLWA 129 (174)
Q Consensus 109 t~kmYrgGkICLd---dHf~PlW~ 129 (174)
+|+ |-.|+|||| ..|+|.|+
T Consensus 79 PNv-ya~G~iClDiLqNrWsp~Yd 101 (152)
T KOG0419|consen 79 PNV-YADGSICLDILQNRWSPTYD 101 (152)
T ss_pred CCc-CCCCcchHHHHhcCCCCchh
Confidence 987 666999998 67777665
No 12
>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=9.8e-10 Score=89.89 Aligned_cols=103 Identities=19% Similarity=0.246 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCC-----CCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecC
Q 030645 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAAN-----PEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELP 103 (174)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n-----~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fP 103 (174)
.+||+||=++++| +-.--|.-.|+- .++++|++.+=| ++++++-.|.|..+.|..||.+||.++|+
T Consensus 6 ~~rl~eErk~wrk-------~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~ 78 (158)
T KOG0424|consen 6 LNRLAEERKKWRK-------DHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK 78 (158)
T ss_pred HHHHHHHHHHHhh-------cCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence 6899999999887 222223222322 234566666655 66666669999999999999999999998
Q ss_pred CCCCcccccccCceeecc----CC-CcccccccCCchhHHHHH
Q 030645 104 QLDGKTQKMYRGGKICLT----VH-FKPLWAKNCPRFGIAHAL 141 (174)
Q Consensus 104 eldgkt~kmYrgGkICLd----dH-f~PlW~~n~p~fgiaha~ 141 (174)
.---|+|| |-.|.|||+ +| |+|.-+.-.=--||..+|
T Consensus 79 ~pl~HPNV-ypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL 120 (158)
T KOG0424|consen 79 PPLFHPNV-YPSGTVCLSILNEEKDWRPAITIKQILLGIQDLL 120 (158)
T ss_pred CCCcCCCc-CCCCcEehhhhccccCCCchhhHHHHHHHHHHHh
Confidence 76679887 778999997 55 999877554445555444
No 13
>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=8.3e-10 Score=90.95 Aligned_cols=99 Identities=18% Similarity=0.307 Sum_probs=83.9
Q ss_pred ChhHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecC
Q 030645 26 DGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELP 103 (174)
Q Consensus 26 d~~~w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fP 103 (174)
|+..=.+||..|.+.|.- ++..-|+--|.++++++|.|.+=| ++.|++-+|+|.++.|..||-.||.|.|-
T Consensus 26 ~~~~V~KRLq~ELm~Lmm-------s~~~gISAFP~~dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFl 98 (175)
T KOG0421|consen 26 DGHSVTKRLQSELMGLMM-------SNTPGISAFPESDNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFL 98 (175)
T ss_pred cCchHHHHHHHHHHHHHh-------cCCCCcccCcCcCceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEee
Confidence 445567899999999875 555666555766899999999999 99999999999999999999999999997
Q ss_pred CCCCcccccccCceeecc---CCCcccccccC
Q 030645 104 QLDGKTQKMYRGGKICLT---VHFKPLWAKNC 132 (174)
Q Consensus 104 eldgkt~kmYrgGkICLd---dHf~PlW~~n~ 132 (174)
.---|+|+.-. |.|||| |.|+-+++-..
T Consensus 99 tpc~HPNVD~~-GnIcLDILkdKWSa~YdVrT 129 (175)
T KOG0421|consen 99 TPCFHPNVDLS-GNICLDILKDKWSAVYDVRT 129 (175)
T ss_pred ccccCCCcccc-ccchHHHHHHHHHHHHhHHH
Confidence 66678888765 789999 99999987543
No 14
>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=6.5e-10 Score=90.55 Aligned_cols=89 Identities=28% Similarity=0.488 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCce-EEeeCCCCCCeeeeeeee-eecccceeEEEEEecCCCCCCCCCeeecCCCCCc
Q 030645 31 TQRLKEEYKALIAYTQMNKSNDNDWF-RISAANPEGTRWTGKCWY-VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGK 108 (174)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf-~Lep~n~dgT~W~gkcw~-~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgk 108 (174)
.+||.+|..-|.+ ||. ..| .|++.+...-+|+|.+-. .-||.+--|+|+|+.|+.||.-||.|.|-...=|
T Consensus 4 ~~Rl~kEL~dl~~----~~~---~~~rn~~~~e~nll~wt~llipd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYH 76 (153)
T KOG0422|consen 4 PRRLRKELADLQK----NKM---KFFRNIEVDEANLLKWTGLLIPDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYH 76 (153)
T ss_pred hHHHHHHHHHHHh----ccH---HHHhhhhcccccceeEEeEecCCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeecc
Confidence 3699999988776 333 355 666656889999999988 7899999999999999999999999999887788
Q ss_pred ccccccCceeecc----CCCccc
Q 030645 109 TQKMYRGGKICLT----VHFKPL 127 (174)
Q Consensus 109 t~kmYrgGkICLd----dHf~Pl 127 (174)
+|+.=+ |++||- +||+|.
T Consensus 77 pNVDe~-gqvClPiis~EnWkP~ 98 (153)
T KOG0422|consen 77 PNVDEK-GQVCLPIISAENWKPA 98 (153)
T ss_pred CCCCCC-CceeeeeeecccccCc
Confidence 888888 999995 999996
No 15
>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.93 E-value=2.2e-09 Score=87.62 Aligned_cols=83 Identities=20% Similarity=0.323 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCC-CCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCC
Q 030645 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAAN-PEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDG 107 (174)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n-~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldg 107 (174)
..||.+||+.|++ +..+-|.-.|+| ++-..|++-+.| +++|++-.|--.+..|..||.+||.++|.--..
T Consensus 6 lkRLm~EykqLt~-------~~P~GIvAgP~~EdnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc~~f 78 (165)
T KOG0426|consen 6 LKRLMAEYKQLTL-------NPPEGIVAGPINEDNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTCEMF 78 (165)
T ss_pred HHHHHHHHHHHcc-------CCCCcceeCCCCccceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeecccc
Confidence 5799999999987 567788777877 677899999999 999999999999999999999999999976667
Q ss_pred cccccccCceeecc
Q 030645 108 KTQKMYRGGKICLT 121 (174)
Q Consensus 108 kt~kmYrgGkICLd 121 (174)
|+|+ |.+|++|..
T Consensus 79 HPNi-y~dG~VCIS 91 (165)
T KOG0426|consen 79 HPNI-YPDGRVCIS 91 (165)
T ss_pred cCcc-cCCCeEEEE
Confidence 8874 999999985
No 16
>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.1e-08 Score=83.49 Aligned_cols=95 Identities=20% Similarity=0.322 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCC
Q 030645 30 WTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDG 107 (174)
Q Consensus 30 w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldg 107 (174)
=..||.+|+..++. +-..-|+.. +.+++++|.=.-=| ++=|.+=.|.|+|+.|..||+..|++-|---.+
T Consensus 16 at~RLqKEl~e~q~-------~pP~G~~~~-v~dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P 87 (161)
T KOG0427|consen 16 ATNRLQKELSEWQN-------NPPTGFKHR-VTDNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAP 87 (161)
T ss_pred HHHHHHHHHHHHhc-------CCCCcceee-cccchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCC
Confidence 47899999998763 345566654 35788888755555 777888899999999999999999999944343
Q ss_pred cccccccCceeecc---CCCcccccccC
Q 030645 108 KTQKMYRGGKICLT---VHFKPLWAKNC 132 (174)
Q Consensus 108 kt~kmYrgGkICLd---dHf~PlW~~n~ 132 (174)
--.-.|.+|-|||| |.|+|+-.-+.
T Consensus 88 ~HPHiYSNGHICL~iL~d~WsPAmsv~S 115 (161)
T KOG0427|consen 88 LHPHIYSNGHICLDILYDSWSPAMSVQS 115 (161)
T ss_pred CCCceecCCeEEEEeecccCCcchhhHH
Confidence 33346999999998 99999876543
No 17
>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.46 E-value=2.9e-07 Score=77.28 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=60.2
Q ss_pred CCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCcccccccCceeecc---CCCcccccc
Q 030645 62 NPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLT---VHFKPLWAK 130 (174)
Q Consensus 62 n~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgkt~kmYrgGkICLd---dHf~PlW~~ 130 (174)
|+..+...-++-| +++|++-.|++++++|..||...|-|.|-.-.-|+|+..-.|.|||| ..|+|+++-
T Consensus 26 nd~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPNIDe~SGsVCLDViNQtWSp~yDL 99 (189)
T KOG0416|consen 26 NDGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPNIDEASGSVCLDVINQTWSPLYDL 99 (189)
T ss_pred cCcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCCchhccCccHHHHHhhhhhHHHHH
Confidence 5556666666555 78888889999999999999999999999999999999999999998 899999863
No 18
>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.40 E-value=7.9e-07 Score=73.79 Aligned_cols=80 Identities=16% Similarity=0.294 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHhcCCCCCCceEEeeCC-CCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCccc
Q 030645 34 LKEEYKALIAYTQMNKSNDNDWFRISAAN-PEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQ 110 (174)
Q Consensus 34 LkeEY~aLikyv~~nk~~d~dwf~Lep~n-~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgkt~ 110 (174)
|.++|+.|++ .-.+-|+...++ .|...|+=-+-+ ++-|++-=|.-....|..||.+||.++|-.=.=|+|
T Consensus 10 l~~qlk~L~~-------~pv~gf~~glvd~~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s~mwHPN 82 (171)
T KOG0425|consen 10 LLKQLKELQE-------EPVEGFSVGLVDDSDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTSKMWHPN 82 (171)
T ss_pred HHHHHHHHhc-------CCCCccccccccCCceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeehhhcCCC
Confidence 4566666554 347888777766 699999988777 999999999999999999999999999977667887
Q ss_pred ccccCceeecc
Q 030645 111 KMYRGGKICLT 121 (174)
Q Consensus 111 kmYrgGkICLd 121 (174)
+ |++|++|..
T Consensus 83 v-y~~G~vCIS 92 (171)
T KOG0425|consen 83 V-YEDGDVCIS 92 (171)
T ss_pred c-CCCCCEEEE
Confidence 5 899999984
No 19
>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=2.6e-06 Score=73.84 Aligned_cols=90 Identities=20% Similarity=0.339 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeec--CCC
Q 030645 30 WTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELEL--PQL 105 (174)
Q Consensus 30 w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~f--Pel 105 (174)
=++||.+||++|.| +--+.+.-.|.-.|--.|.=..-| ++||.+--|-=.+..|..||-.||-|.. |+=
T Consensus 6 a~kRl~keY~~l~k-------~Pv~~i~A~P~p~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiTPNG 78 (244)
T KOG0894|consen 6 AVKRLQKEYRALCK-------DPVPYIVARPNPNNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMITPNG 78 (244)
T ss_pred HHHHHHHHHHHHHh-------CCchhhccCCCccceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEECCCC
Confidence 47899999999987 334555555633666777777777 7888887887788899999999999987 333
Q ss_pred CCcccccccCceeecc------CCCccccccc
Q 030645 106 DGKTQKMYRGGKICLT------VHFKPLWAKN 131 (174)
Q Consensus 106 dgkt~kmYrgGkICLd------dHf~PlW~~n 131 (174)
-.+|| -+|||. |.|.|.|.-.
T Consensus 79 RFktn-----tRLCLSiSDfHPdsWNP~WsVS 105 (244)
T KOG0894|consen 79 RFKTN-----TRLCLSISDFHPDSWNPGWSVS 105 (244)
T ss_pred ceecC-----ceEEEeccccCcCcCCCcccHH
Confidence 36776 489996 8999999854
No 20
>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.05 E-value=8e-06 Score=72.41 Aligned_cols=92 Identities=20% Similarity=0.344 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCC
Q 030645 30 WTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDG 107 (174)
Q Consensus 30 w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldg 107 (174)
=++||.+|-+.|. +-+|-|.-.|..+++..|.=.+.| +++|++--|-=+|.+|+.||+-||.|-+=.-.|
T Consensus 12 aVkRlmkEa~El~--------~Ptd~yha~plEdNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNG 83 (314)
T KOG0428|consen 12 AVKRLMKEAAELK--------DPTDHYHAQPLEDNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNG 83 (314)
T ss_pred HHHHHHHHHHHhc--------CchhhhhhccchhceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCC
Confidence 4789999887764 334555444667899999999998 999999999999999999999999998744343
Q ss_pred cccccccCceeecc------CCCcccccccC
Q 030645 108 KTQKMYRGGKICLT------VHFKPLWAKNC 132 (174)
Q Consensus 108 kt~kmYrgGkICLd------dHf~PlW~~n~ 132 (174)
.-.+ +-||||. +||-|-|+...
T Consensus 84 RFE~---nkKiCLSISgyHPEtWqPSWSiRT 111 (314)
T KOG0428|consen 84 RFEV---NKKICLSISGYHPETWQPSWSIRT 111 (314)
T ss_pred ceee---CceEEEEecCCCccccCcchhHHH
Confidence 3211 3489997 89999998653
No 21
>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.93 E-value=6.6e-06 Score=69.10 Aligned_cols=61 Identities=20% Similarity=0.463 Sum_probs=49.8
Q ss_pred ceeEEEEEecCCCCCCCCCeeecCCCCCcccccccCceeecc---CCCcccccccCCchhHHHHH
Q 030645 80 KYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLT---VHFKPLWAKNCPRFGIAHAL 141 (174)
Q Consensus 80 kyeF~lefdIP~tYP~tpPeI~fPeldgkt~kmYrgGkICLd---dHf~PlW~~n~p~fgiaha~ 141 (174)
+-.|.++|+||..||..||++.--.---|+|+.- .|.|||+ ++|+|.-+-|.=.+|+-|.+
T Consensus 75 gGkf~F~~~v~~~Yp~~PPKVkCltkV~HPNId~-~GnVCLnILRedW~P~lnL~sIi~GL~~LF 138 (184)
T KOG0420|consen 75 GGKFRFKFKVPNAYPHEPPKVKCLTKVYHPNIDL-DGNVCLNILREDWRPVLNLNSIIYGLQFLF 138 (184)
T ss_pred CceEEEEEECCCCCCCCCCeeeeeeccccCCcCC-cchHHHHHHHhcCccccchHHHHHHHHHHh
Confidence 3368888999999999999997633334555553 4899998 99999999999999998876
No 22
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=97.12 E-value=0.0017 Score=66.05 Aligned_cols=108 Identities=18% Similarity=0.246 Sum_probs=75.1
Q ss_pred ccCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee--eecccceeEEEEEecCCCCCCCC
Q 030645 20 TKAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATA 97 (174)
Q Consensus 20 ~~agprd~~~w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tp 97 (174)
.++++.-...|.+|+++|.+.|=+-+ -+.+...|-....+.=...+=+ ++||..--|.++|.-|.+||..|
T Consensus 273 ~~~~k~hs~~~skrv~ke~~llskdl-------pEgifvrp~e~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~p 345 (1101)
T KOG0895|consen 273 GKSSKPHSKNWSKKVAKELKLLSKDL-------PEGIFVRPDEGRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVP 345 (1101)
T ss_pred CCCCCccchhhHHHHHHHhhhhcccC-------CCCccccccccccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCC
Confidence 34556666889999999999865422 1223333423455566666555 77777778889999999999999
Q ss_pred CeeecCCC-CCccc-ccccCceeecc--CCCcc-cccccCCc
Q 030645 98 PELELPQL-DGKTQ-KMYRGGKICLT--VHFKP-LWAKNCPR 134 (174)
Q Consensus 98 PeI~fPel-dgkt~-kmYrgGkICLd--dHf~P-lW~~n~p~ 134 (174)
|.+.+-.. ..+.| --||.|||||+ ..|+= .|.+-.|+
T Consensus 346 p~v~~lt~~~~R~nPNlYn~GKVcLslLgTwtg~~~e~wtp~ 387 (1101)
T KOG0895|consen 346 PHVKYLTGGGVRLNPNLYNDGKVCLSLLGTWTGSRREKWTPN 387 (1101)
T ss_pred ceeEEeeccceeecCCcccCceEEeeeeeecccccccCCCcc
Confidence 99999766 44443 46999999998 44544 55555555
No 23
>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.0007 Score=57.84 Aligned_cols=85 Identities=16% Similarity=0.242 Sum_probs=68.5
Q ss_pred CCCCCCceEEeeCC-CCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCcccccccCceeecc---C
Q 030645 49 KSNDNDWFRISAAN-PEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKICLT---V 122 (174)
Q Consensus 49 k~~d~dwf~Lep~n-~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgkt~kmYrgGkICLd---d 122 (174)
.++-.|-|.+-+ | .|.|.-...+=+ ++||..--|++.+-+--.||.+||+=-|-.-..|+|+. .+|+||.+ -
T Consensus 23 ~~~PPdGIKV~~-NeeD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPNVa-aNGEICVNtLKk 100 (223)
T KOG0423|consen 23 DESPPDGIKVVV-NEEDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPNVA-ANGEICVNTLKK 100 (223)
T ss_pred ccCCCCceEEec-ChHHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCCcc-cCceehhhhhhc
Confidence 345578886666 5 677777777766 88888889999999999999999999887777888886 46999987 6
Q ss_pred CCcccccccCCchhHHHHHh
Q 030645 123 HFKPLWAKNCPRFGIAHALC 142 (174)
Q Consensus 123 Hf~PlW~~n~p~fgiaha~a 142 (174)
.|+ |-.||-|.|.
T Consensus 101 DW~-------p~LGirHvLl 113 (223)
T KOG0423|consen 101 DWN-------PSLGIRHVLL 113 (223)
T ss_pred ccC-------cccchhhHhh
Confidence 676 4689999873
No 24
>PF14461 Prok-E2_B: Prokaryotic E2 family B
Probab=96.77 E-value=0.0031 Score=48.54 Aligned_cols=59 Identities=22% Similarity=0.238 Sum_probs=45.9
Q ss_pred cceeEEEEEecCCCCCCCCCeeecCCCCC--cccccccCceeeccCCCcccccccCCchhHH
Q 030645 79 LKYEFDLQFDIPVTYPATAPELELPQLDG--KTQKMYRGGKICLTVHFKPLWAKNCPRFGIA 138 (174)
Q Consensus 79 ~kyeF~lefdIP~tYP~tpPeI~fPeldg--kt~kmYrgGkICLddHf~PlW~~n~p~fgia 138 (174)
.+.+|.|.+.+|..||..||.|.+.+... .-.-.+.+|+|||-+. .=.|+.+-|.==++
T Consensus 34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~-~~~~D~~~P~~~~~ 94 (133)
T PF14461_consen 34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDE-ELVLDPWDPEGIIA 94 (133)
T ss_pred CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecC-CcccCccCHHHHHH
Confidence 67799999999999999999998865442 3334455999999877 78888888853333
No 25
>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]
Probab=95.83 E-value=0.047 Score=48.13 Aligned_cols=98 Identities=16% Similarity=0.234 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeeeee-cccceeEEEEEecCCCCCCCC--CeeecCCCCCcc
Q 030645 33 RLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVH-NLLKYEFDLQFDIPVTYPATA--PELELPQLDGKT 109 (174)
Q Consensus 33 RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~~~-~~~kyeF~lefdIP~tYP~tp--PeI~fPeldgkt 109 (174)
-++.||.-|-.|+.--++ .-+-+..-|+-..+--|||.+..-+ =|.+--|++.|-||..||..- |.+-|-+---|+
T Consensus 17 ~i~qey~llAEf~lV~~e-kL~gIyviPSyan~l~WFGViFvr~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP 95 (258)
T KOG0429|consen 17 NILQEYALLAEFVLVCRE-KLDGIYVIPSYANKLLWFGVIFVRKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHP 95 (258)
T ss_pred HHHHHHHHHHHHHHHHhc-cCCceEEcccccccceEEEEEEEecccccCceEEEEEEcCccCCCcCCCCeEEeecccccc
Confidence 367888888877755433 3455555565689999999998844 467889999999999999543 998885444677
Q ss_pred cccccCceeeccCCCcccccccC
Q 030645 110 QKMYRGGKICLTVHFKPLWAKNC 132 (174)
Q Consensus 110 ~kmYrgGkICLddHf~PlW~~n~ 132 (174)
.+-=.+++.||+ |+-|-|.|+-
T Consensus 96 ~icp~skeLdl~-raf~eWRk~e 117 (258)
T KOG0429|consen 96 LICPKSKELDLN-RAFPEWRKEE 117 (258)
T ss_pred ccCCCccceeHh-hhhhhhhccc
Confidence 666677999986 5557798874
No 26
>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.023 Score=58.06 Aligned_cols=83 Identities=23% Similarity=0.493 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcC-----CCCCCceEEeeCCCCCCeeeeeeeeeecccceeEEEEEecCCCCCCCCCeeecC
Q 030645 29 AWTQRLKEEYKALIAYTQMNK-----SNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPATAPELELP 103 (174)
Q Consensus 29 ~w~~RLkeEY~aLikyv~~nk-----~~d~dwf~Lep~n~dgT~W~gkcw~~~~~~kyeF~lefdIP~tYP~tpPeI~fP 103 (174)
+|.+....||+.|..-+-+.- +.--|.++.-=++..||.+... -|-+.|..|.+||..||-+-.-
T Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~vr~~e~r~d~~~~~~~g~~~tpy~~~----------~f~fd~~~~~~yp~~pp~~~~~ 920 (1101)
T KOG0895|consen 851 QWAKKVQTEWKILPLSLPSGIFVRAYEDRMDLLRAVIVGAAGTPYQDG----------LFFFDFQFPQDYPSSPPLVHYH 920 (1101)
T ss_pred HHHHHHHHHHHhhhccCCCceEEEechHHHHHHHHHhhCCCCCccccc----------eEEEEeecCCCCCCCCCceEee
Confidence 688888888877654221110 0002222111223555555544 5666667899999999988663
Q ss_pred CCC-CcccccccCceeecc
Q 030645 104 QLD-GKTQKMYRGGKICLT 121 (174)
Q Consensus 104 eld-gkt~kmYrgGkICLd 121 (174)
.-- --..-.|.+||+||.
T Consensus 921 s~~~r~npnly~~g~vc~s 939 (1101)
T KOG0895|consen 921 SGGVRLNPNLYEDGKVCLS 939 (1101)
T ss_pred cCceeeCcccccccceehh
Confidence 222 112346999999995
No 27
>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO). ; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.
Probab=94.98 E-value=0.087 Score=37.17 Aligned_cols=65 Identities=20% Similarity=0.233 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeee----eeecccceeEEEEEecCCCCCCCCCeeecC
Q 030645 31 TQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCW----YVHNLLKYEFDLQFDIPVTYPATAPELELP 103 (174)
Q Consensus 31 ~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw----~~~~~~kyeF~lefdIP~tYP~tpPeI~fP 103 (174)
.++..+|..+|..--.+.. ++..........-++- ....-....+.|.|.+|.+||.++|.|.+-
T Consensus 3 ~e~~~~EieaL~sIy~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~ 71 (113)
T PF05773_consen 3 EEQQEEEIEALQSIYPDDF--------IEIESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLE 71 (113)
T ss_dssp HHHHHHHHHHHHHHSSSSE--------SSSTSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEE
T ss_pred HHHHHHHHHHHHHHcCCCc--------cccccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEE
Confidence 4678899999877543332 1110011111222220 122334458999999999999999999873
No 28
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=93.64 E-value=0.17 Score=41.75 Aligned_cols=71 Identities=20% Similarity=0.251 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee---eecccceeEEEEEecCCCCCCCCCeeecCCCC
Q 030645 30 WTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY---VHNLLKYEFDLQFDIPVTYPATAPELELPQLD 106 (174)
Q Consensus 30 w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~---~~~~~kyeF~lefdIP~tYP~tpPeI~fPeld 106 (174)
|...+++=..+|++++..| +|-| +.|.|.|+||. +++=++|.||+...+|..-+...+.|.+-++.
T Consensus 21 ~~~~~~~~~~~l~~W~~~~--------~l~p---~~S~~~gI~~ddP~~Tp~e~~R~D~cv~v~~~~~~n~~~v~~~~i~ 89 (154)
T COG3449 21 DPATLKQTFEQLIAWRREN--------GLLP---EQSETLGIYQDDPDTTPAEKCRYDACVVVPEPIPENSEGVQLGEIP 89 (154)
T ss_pred cHHHHHHHHHHHHHHHHHc--------CCCC---CCceEEEEecCCCCCCCHHHceeeEEEEcCCccCCCCCceeEeeec
Confidence 8889999999999999999 5644 48899999998 88999999999999998877777888887777
Q ss_pred -Ccccc
Q 030645 107 -GKTQK 111 (174)
Q Consensus 107 -gkt~k 111 (174)
|+.++
T Consensus 90 GG~YAV 95 (154)
T COG3449 90 GGLYAV 95 (154)
T ss_pred CCceEE
Confidence 55443
No 29
>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.1 Score=42.64 Aligned_cols=56 Identities=18% Similarity=0.214 Sum_probs=44.4
Q ss_pred CCCCeeeeeeee--eecccceeEEEEEecCCCCCCCCCeeecCCCCCcccccccCcee
Q 030645 63 PEGTRWTGKCWY--VHNLLKYEFDLQFDIPVTYPATAPELELPQLDGKTQKMYRGGKI 118 (174)
Q Consensus 63 ~dgT~W~gkcw~--~~~~~kyeF~lefdIP~tYP~tpPeI~fPeldgkt~kmYrgGkI 118 (174)
-.+++|.|.+-+ -+.|++--|.|.|+.-..||.+||.++|-.-+-..-+.-.+|.+
T Consensus 36 mtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~gvn~~~g~V 93 (138)
T KOG0896|consen 36 MTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMNGVNSSNGVV 93 (138)
T ss_pred ceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeecccccCCCcc
Confidence 568999999999 88899999999999999999999999996555333344444543
No 30
>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain.
Probab=91.98 E-value=0.16 Score=35.66 Aligned_cols=24 Identities=33% Similarity=0.618 Sum_probs=21.1
Q ss_pred ceeEEEEEecCCCCCCCCCeeecC
Q 030645 80 KYEFDLQFDIPVTYPATAPELELP 103 (174)
Q Consensus 80 kyeF~lefdIP~tYP~tpPeI~fP 103 (174)
.-.+.|.|..|.+||.++|.|.+-
T Consensus 40 ~~~~~l~~~~p~~YP~~~P~i~~~ 63 (107)
T smart00591 40 YVSLTLQVKLPENYPDEAPPISLL 63 (107)
T ss_pred ceEEEEEEECCCCCCCCCCCeEEE
Confidence 346899999999999999999874
No 31
>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub). Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....
Probab=87.32 E-value=2 Score=33.17 Aligned_cols=62 Identities=19% Similarity=0.397 Sum_probs=38.1
Q ss_pred CCCCeeeeeeee-----eecccceeEEEEEecCCCCCCCCCeeec-CCCC-----CcccccccCceeecc--CCCcc
Q 030645 63 PEGTRWTGKCWY-----VHNLLKYEFDLQFDIPVTYPATAPELEL-PQLD-----GKTQKMYRGGKICLT--VHFKP 126 (174)
Q Consensus 63 ~dgT~W~gkcw~-----~~~~~kyeF~lefdIP~tYP~tpPeI~f-Peld-----gkt~kmYrgGkICLd--dHf~P 126 (174)
.||+.=.=.|-+ .+.-..|..-+.|-||.+||.+||-|-+ |+.+ +| .+.- .|+|.+. +.|.+
T Consensus 25 ~~G~~~~LL~L~Gtipi~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~-~Vd~-~G~v~~pyL~~W~~ 99 (121)
T PF05743_consen 25 NDGSSKLLLCLYGTIPITYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSH-HVDS-NGRVYLPYLQNWNP 99 (121)
T ss_dssp TTSTEEEEEEEEEEEEECCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCC-CB-T-TSBB-SHHHHT--T
T ss_pred CCCChheEEEEecCcccccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCC-eECC-CCCEeCchhccCCC
Confidence 455543333333 3334468999999999999999999876 3333 44 5554 4788876 77776
No 32
>PF14462 Prok-E2_E: Prokaryotic E2 family E
Probab=52.21 E-value=12 Score=29.82 Aligned_cols=29 Identities=28% Similarity=0.446 Sum_probs=22.7
Q ss_pred ccceeEEEEEecCCCCCCCCCeeec--CCCC
Q 030645 78 LLKYEFDLQFDIPVTYPATAPELEL--PQLD 106 (174)
Q Consensus 78 ~~kyeF~lefdIP~tYP~tpPeI~f--Peld 106 (174)
|..-+=+|-|.||..||.++|.+-. |.|.
T Consensus 39 y~~~~~dili~iP~gYP~~~~DmfY~~P~L~ 69 (122)
T PF14462_consen 39 YNHNEVDILILIPPGYPDAPLDMFYVYPPLK 69 (122)
T ss_pred cCccceEEEEECCCCCCCCCCCcEEECCceE
Confidence 4444678999999999999998854 5553
No 33
>PF06113 BRE: Brain and reproductive organ-expressed protein (BRE); InterPro: IPR010358 This family consists of several eukaryotic brain and reproductive organ-expressed (BRE) proteins. BRE is a putative stress-modulating gene, found able to down-regulate TNF-alpha-induced-NF-kappaB activation upon over expression. A total of six isoforms are produced by alternative splicing predominantly at either end of the gene. Compared to normal cells, immortalised human cell lines uniformly express higher levels of BRE. Peripheral blood monocytes respond to LPS by down-regulating the expression of all the BRE isoforms. It is thought that the function of BRE and its isoforms is to regulate peroxisomal activities [].
Probab=42.85 E-value=25 Score=32.40 Aligned_cols=29 Identities=21% Similarity=0.557 Sum_probs=25.3
Q ss_pred eecccceeEEEEEecCCCCCCCCCeeecC
Q 030645 75 VHNLLKYEFDLQFDIPVTYPATAPELELP 103 (174)
Q Consensus 75 ~~~~~kyeF~lefdIP~tYP~tpPeI~fP 103 (174)
......|.|-+.|+||..+|...|.+.|-
T Consensus 300 L~~~~~F~flvHi~Lp~~FP~~qP~ltlq 328 (333)
T PF06113_consen 300 LLESGDFTFLVHISLPIQFPKDQPSLTLQ 328 (333)
T ss_pred HhhcCCeEEEEEEeccCCCCCcCCeEEEE
Confidence 44567789999999999999999999875
No 34
>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]
Probab=42.09 E-value=16 Score=29.52 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=41.1
Q ss_pred eEEE-EEecCCCCCCCCCeeec--CCCCCcccccccCceeecc----CCCcccccccCCchhHHHHHhhc
Q 030645 82 EFDL-QFDIPVTYPATAPELEL--PQLDGKTQKMYRGGKICLT----VHFKPLWAKNCPRFGIAHALCLG 144 (174)
Q Consensus 82 eF~l-efdIP~tYP~tpPeI~f--Peldgkt~kmYrgGkICLd----dHf~PlW~~n~p~fgiaha~alg 144 (174)
+|.| .+.-|.+||-.||+++. |-+|+-+ --.||-||.. .-|+-.+.-..=.-|||-.+-=|
T Consensus 11 e~ill~~~f~~~fp~~ppf~rvv~p~~~~Gy--vl~ggAIcmellt~qgwssay~Ve~vi~qiaatlVkG 78 (122)
T KOG0897|consen 11 ENILLLDIFDDNFPFMPPFPRVVKPLEDEGY--VLEGGAICMELLTKQGWSSAYEVERVIMQIAATLVKG 78 (122)
T ss_pred ceeEeeeecccCCCCCCCcceeeeecccCCE--EecchhhHHHHHccccccchhhHHHHHHHHHHHhhcc
Confidence 4544 44557999999999887 5455333 3479999984 77777776666666666554444
No 35
>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli. The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....
Probab=31.87 E-value=32 Score=24.86 Aligned_cols=14 Identities=36% Similarity=0.961 Sum_probs=8.8
Q ss_pred ceeEEEEEecCCCC
Q 030645 80 KYEFDLQFDIPVTY 93 (174)
Q Consensus 80 kyeF~lefdIP~tY 93 (174)
.|+|.++|.||..-
T Consensus 94 ~~~fpF~f~LP~~l 107 (149)
T PF00339_consen 94 EYEFPFEFQLPSNL 107 (149)
T ss_dssp TTEEEEEE---TTS
T ss_pred CEEEEEEEECCCCC
Confidence 58999999999555
No 36
>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=30.25 E-value=44 Score=29.22 Aligned_cols=22 Identities=36% Similarity=0.584 Sum_probs=19.8
Q ss_pred eEEEEEecCCCCCCCCCeeecC
Q 030645 82 EFDLQFDIPVTYPATAPELELP 103 (174)
Q Consensus 82 eF~lefdIP~tYP~tpPeI~fP 103 (174)
.|.|.|..+.+||..||-|.+-
T Consensus 50 ~~~l~~s~tEnYPDe~Pli~~~ 71 (215)
T KOG4018|consen 50 SFILVFSLTENYPDEAPLIEAF 71 (215)
T ss_pred cEEEEEEccCCCCCCCcceecc
Confidence 7999999999999999999553
No 37
>PF09606 Med15: ARC105 or Med15 subunit of Mediator complex non-fungal; InterPro: IPR019087 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. The proteins in this entry represent subunit Med15 of the Mediator complex. They contain a single copy of the approximately 70 residue ARC105 domain. The ARC105 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, ARC105 is a critical transducer of gene activation signals that control early metazoan development []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2GUT_A.
Probab=28.39 E-value=19 Score=36.47 Aligned_cols=87 Identities=16% Similarity=0.209 Sum_probs=0.0
Q ss_pred cceeccCCCCC--hhHHHHHHHHHHHH---HHHHHHhcC-CCCCCce-EEeeCCCCC-CeeeeeeeeeecccceeEEEEE
Q 030645 16 PLLSTKAGPRD--GAAWTQRLKEEYKA---LIAYTQMNK-SNDNDWF-RISAANPEG-TRWTGKCWYVHNLLKYEFDLQF 87 (174)
Q Consensus 16 pl~~~~agprd--~~~w~~RLkeEY~a---Likyv~~nk-~~d~dwf-~Lep~n~dg-T~W~gkcw~~~~~~kyeF~lef 87 (174)
|.|++--||-- .....+|.|=|+.. |...|+-.- .-|..|. .|+|..-.+ ..=.=+||-+..++--.=-|++
T Consensus 641 p~~~~~~g~~~~~~~~~~k~~~~~~~~~~~ip~~lqgEva~Ld~kF~v~ldp~~~~~~~~v~Lic~Ldd~~LP~VPPl~l 720 (799)
T PF09606_consen 641 PAMTALHGPPIKAPPPPPKKRRLEEDERQSIPNVLQGEVARLDPKFKVNLDPSHCSGNGSVHLICKLDDKNLPSVPPLRL 720 (799)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHhhccCCCCCCCCCcchhcccchhhhhhhHHHHHHHHHHhcccceeecChhccCCCCeEEEEEEeCCCCCCCCCCeeE
Confidence 66777777632 34466666655533 222222221 1233333 777733222 2333567777666667777899
Q ss_pred ecCCCCCCCCCeeec
Q 030645 88 DIPVTYPATAPELEL 102 (174)
Q Consensus 88 dIP~tYP~tpPeI~f 102 (174)
.||.+||.++|.+.+
T Consensus 721 ~vP~~YP~~sp~~~~ 735 (799)
T PF09606_consen 721 TVPADYPRQSPQCSV 735 (799)
T ss_dssp ---------------
T ss_pred eCCCCCCccCCcCcc
Confidence 999999999999877
No 38
>PF08872 KGK: KGK domain; InterPro: IPR014971 This protein is found in one or two copies in cyanobacterial proteins. It is named after a short sequence motif.
Probab=26.02 E-value=1.6e+02 Score=23.10 Aligned_cols=22 Identities=32% Similarity=0.667 Sum_probs=14.4
Q ss_pred CCCCeee-eeeeeeecccceeEEEEEecCCC
Q 030645 63 PEGTRWT-GKCWYVHNLLKYEFDLQFDIPVT 92 (174)
Q Consensus 63 ~dgT~W~-gkcw~~~~~~kyeF~lefdIP~t 92 (174)
.....|. ||. +.++.||| +|++
T Consensus 74 ~g~~~W~kGK~-------ri~~~leF-~pde 96 (114)
T PF08872_consen 74 FGSKGWQKGKV-------RIKVSLEF-IPDE 96 (114)
T ss_pred cCCCCCccceE-------EEEEEEEE-ecCC
Confidence 3445887 774 44668888 6664
No 39
>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL. FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.
Probab=24.50 E-value=55 Score=29.07 Aligned_cols=22 Identities=27% Similarity=0.606 Sum_probs=18.8
Q ss_pred eEEEEEecCCCCCCCCCeeecC
Q 030645 82 EFDLQFDIPVTYPATAPELELP 103 (174)
Q Consensus 82 eF~lefdIP~tYP~tpPeI~fP 103 (174)
+..|++.+|..||..+|++..|
T Consensus 138 ~H~l~l~l~~~yp~~~p~~~~~ 159 (291)
T PF09765_consen 138 QHYLELKLPSNYPFEPPSCSLD 159 (291)
T ss_dssp EEEEEEETTTTTTTSEEEECS-
T ss_pred eEEEEEEECCCCCCCCceeeCC
Confidence 5678889999999999999876
No 40
>PF10981 DUF2788: Protein of unknown function (DUF2788); InterPro: IPR021249 This bacterial family of proteins have no known function.
Probab=24.40 E-value=34 Score=23.95 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=13.3
Q ss_pred cccccCCchhHHH-HHhhccc
Q 030645 127 LWAKNCPRFGIAH-ALCLGLA 146 (174)
Q Consensus 127 lW~~n~p~fgiah-a~algl~ 146 (174)
++..|+||||-.= -++||||
T Consensus 18 ~kks~agkfG~~ilf~vLglG 38 (52)
T PF10981_consen 18 AKKSKAGKFGTFILFLVLGLG 38 (52)
T ss_pred HHhcCCCCcchhHHHHHHHHH
Confidence 5778999999653 2344444
No 41
>COG4957 Predicted transcriptional regulator [Transcription]
Probab=24.31 E-value=35 Score=28.41 Aligned_cols=46 Identities=20% Similarity=0.417 Sum_probs=28.8
Q ss_pred CCce-EEeeCCCCCCeeeeeeee---eecccceeEEEEEecCCCCCCCCCeeec
Q 030645 53 NDWF-RISAANPEGTRWTGKCWY---VHNLLKYEFDLQFDIPVTYPATAPELEL 102 (174)
Q Consensus 53 ~dwf-~Lep~n~dgT~W~gkcw~---~~~~~kyeF~lefdIP~tYP~tpPeI~f 102 (174)
.|+| .| .||-+...-=.+ .|.|--=+|+=--++|..|||++|..+-
T Consensus 74 pD~IicL----EDGkkfKSLKRHL~t~~gmTPd~YR~KW~LP~dYPMvAPnYAa 123 (148)
T COG4957 74 PDYIICL----EDGKKFKSLKRHLTTHYGLTPDEYRAKWGLPPDYPMVAPNYAA 123 (148)
T ss_pred CCeEEEe----ccCcchHHHHHHHhcccCCCHHHHHHhcCCCCCCCccchHHHH
Confidence 4555 55 355555543333 3455444566667899999999997653
No 42
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=23.65 E-value=1.6e+02 Score=22.38 Aligned_cols=67 Identities=13% Similarity=0.278 Sum_probs=38.4
Q ss_pred hhccccceec-cCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeee---eecccceeEEEE
Q 030645 11 TLTQIPLLST-KAGPRDGAAWTQRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWY---VHNLLKYEFDLQ 86 (174)
Q Consensus 11 ~~~~ipl~~~-~agprd~~~w~~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~---~~~~~kyeF~le 86 (174)
.+..+.++.. ..||...+ +.+=+..|.++++.| .|.+ +.+.|.++. +++-.++.|+++
T Consensus 7 ~~~~~~va~ir~~g~~~~~-----~~~~~~~L~~~~~~~--------~l~~-----~~~~~i~~D~p~~~~~~~~R~d~~ 68 (156)
T PRK10016 7 QEQKRTIAGFHLVGPWEQT-----VKQGFEQLMMWVDSH--------NIVP-----KEWVAVYYDNPDEVPAEKLRCDTV 68 (156)
T ss_pred EccCceEEEEEeecCchhH-----HHHHHHHHHHHHHHc--------CCCC-----CcEEEEECCCCCCCChHHceeeEE
Confidence 3444455444 45777421 233345566677666 2212 135665544 345557789999
Q ss_pred EecCCCCCC
Q 030645 87 FDIPVTYPA 95 (174)
Q Consensus 87 fdIP~tYP~ 95 (174)
+.||+.-+.
T Consensus 69 i~v~~~~~~ 77 (156)
T PRK10016 69 VTVPDDFVL 77 (156)
T ss_pred EEeCCCccc
Confidence 999998754
No 43
>PF03920 TLE_N: Groucho/TLE N-terminal Q-rich domain; InterPro: IPR005617 The N-terminal domain of the Grouch/TLE co-repressor proteins are involved in oligomerisation.; GO: 0005515 protein binding
Probab=22.17 E-value=76 Score=26.06 Aligned_cols=19 Identities=32% Similarity=0.300 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHhc
Q 030645 30 WTQRLKEEYKALIAYTQMN 48 (174)
Q Consensus 30 w~~RLkeEY~aLikyv~~n 48 (174)
=.+|||+||.-|.+...+.
T Consensus 24 s~drIKeEf~~lqaq~hsl 42 (135)
T PF03920_consen 24 SCDRIKEEFQFLQAQYHSL 42 (135)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 4689999999999988666
No 44
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=20.66 E-value=29 Score=31.12 Aligned_cols=58 Identities=19% Similarity=0.198 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEeeCCCCCCeeeeeeeeeecccceeEEEEE-ecCCCCCCCCC
Q 030645 32 QRLKEEYKALIAYTQMNKSNDNDWFRISAANPEGTRWTGKCWYVHNLLKYEFDLQF-DIPVTYPATAP 98 (174)
Q Consensus 32 ~RLkeEY~aLikyv~~nk~~d~dwf~Lep~n~dgT~W~gkcw~~~~~~kyeF~lef-dIP~tYP~tpP 98 (174)
..|.+.|-.|-+||..|+... .+| |=+...+..-...-+++..|.|++ |||..| .-||
T Consensus 29 ~~L~~~~p~l~~~v~~~~~g~---~~i-----dF~~~~Av~~LnkalL~~~ygl~~wdip~~~-LcPp 87 (321)
T PRK11727 29 AALIQSHPELKPFVILNPYGE---QSI-----DFANPLAVKALNKALLAHFYGVAHWDIPAGY-LCPP 87 (321)
T ss_pred HHHHHhChhHHHHhccCCCCC---eee-----eCCCHHHHHHHHHHHHHHhcCCCcccCCCCC-cCCC
Confidence 579999999999998874322 122 222234444445568889999996 999999 5555
No 45
>PF09654 DUF2396: Protein of unknown function (DUF2396); InterPro: IPR013472 These conserved hypothetical proteins have so far been found only in the Cyanobacteria. They are about 170 amino acids long and contain a CxxCx(14)CxxH motif near the N terminus.
Probab=20.09 E-value=1.9e+02 Score=24.46 Aligned_cols=54 Identities=17% Similarity=0.527 Sum_probs=29.3
Q ss_pred HHHHHHHHHH-HHHhcC----CCCCC---ce----EEeeCCCCCCeeeeeeeeeecccceeEEEEEecCCCCCC
Q 030645 34 LKEEYKALIA-YTQMNK----SNDND---WF----RISAANPEGTRWTGKCWYVHNLLKYEFDLQFDIPVTYPA 95 (174)
Q Consensus 34 LkeEY~aLik-yv~~nk----~~d~d---wf----~Lep~n~dgT~W~gkcw~~~~~~kyeF~lefdIP~tYP~ 95 (174)
|.+-|+.|+. |++.+. +.+.. .. ...|.-++..+|.-+ +|+++-|..+|..||-
T Consensus 91 iA~RYr~L~~~yLer~~~wr~~~~~~~prLYGLPveFsp~~~~d~~W~VI--------NFdlekEpG~p~ryPy 156 (161)
T PF09654_consen 91 IAQRYRELVSPYLERSTPWRGQSESGRPRLYGLPVEFSPDPDEDPCWQVI--------NFDLEKEPGVPARYPY 156 (161)
T ss_pred hHHHHHHHHHHHHhccCCcCCCCCCCCcceeccceecCCCCCCCCceeEE--------EeeeccCCCCcccCcc
Confidence 4567888875 887652 22211 11 122322556666655 3445556778888874
Done!