BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030647
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AWL|B Chain B, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 153 bits (387), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 84/93 (90%)
Query: 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKR 83
+ REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSEAS++C +EKR
Sbjct: 2 SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKR 61
Query: 84 KTINGDDLLWAMATLGFEDYIDPLKIYLTRYRE 116
KTING+D+L+AM+TLGF+ Y++PLK+YL ++RE
Sbjct: 62 KTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 94
>pdb|1N1J|A Chain A, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 93
Score = 153 bits (386), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 67/93 (72%), Positives = 84/93 (90%)
Query: 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKR 83
+ REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSEAS++C +EKR
Sbjct: 1 SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKR 60
Query: 84 KTINGDDLLWAMATLGFEDYIDPLKIYLTRYRE 116
KTING+D+L+AM+TLGF+ Y++PLK+YL ++RE
Sbjct: 61 KTINGEDILFAMSTLGFDSYVEPLKLYLQKFRE 93
>pdb|4G91|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|B Chain B, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 92
Score = 152 bits (385), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 67/92 (72%), Positives = 85/92 (92%)
Query: 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 84
++EQDR+LPIAN++RIMK ALP N KIAK+AKE +QECVSEFISFITSEAS+KCQ+EKRK
Sbjct: 1 MKEQDRWLPIANVARIMKLALPENAKIAKEAKECMQECVSEFISFITSEASEKCQQEKRK 60
Query: 85 TINGDDLLWAMATLGFEDYIDPLKIYLTRYRE 116
T+NG+D+L+AM +LGFE+Y + LKIYL++YRE
Sbjct: 61 TVNGEDILFAMTSLGFENYAEALKIYLSKYRE 92
>pdb|1JFI|B Chain B, Crystal Structure Of The Nc2-Tbp-Dna Ternary Complex
Length = 179
Score = 69.3 bits (168), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D +P A I++++K+ LP N ++A DA+E V C +EFI I+SEA++ C + ++KTI+
Sbjct: 13 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 71
Query: 89 DDLLWAMATLGFEDYIDPLKIYL 111
+ ++ A+ +LGF YI +K L
Sbjct: 72 EHVIQALESLGFGSYISEVKEVL 94
>pdb|2BYK|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYK|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|B Chain B, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
pdb|2BYM|D Chain D, Histone Fold Heterodimer Of The Chromatin Accessibility
Complex
Length = 128
Score = 55.8 bits (133), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
R +D LP A I R++K+ALP + ++K+A+ + S F F+TS ++ ++ KT
Sbjct: 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKT 63
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
I D+L + L FE ++ L L YR
Sbjct: 64 ITAKDILQTLTELDFESFVPSLTQDLEVYR 93
>pdb|1BFM|A Chain A, Histone B From Methanothermus Fervidus
pdb|1BFM|B Chain B, Histone B From Methanothermus Fervidus
pdb|1A7W|A Chain A, Crystal Structure Of The Histone Hmfb From
Methanothermus Fervidus
Length = 69
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LPIA I RI+K A +++ DA+ T+ + + E I SEA + RKTI +D+
Sbjct: 3 LPIAPIGRIIKDA--GAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDI 60
Query: 92 LWAM 95
A+
Sbjct: 61 ELAV 64
>pdb|1B6W|A Chain A, Crystal Structure Of The Selenomethionine Variant Of
Histone Hmfb From Methanothermus Fervidus
Length = 69
Score = 33.1 bits (74), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LPIA I RI+K A +++ DA+ T+ + + E I SEA + RKTI +D+
Sbjct: 3 LPIAPIGRIIKDA--GAERVSDDARITLAKILEEXGRDIASEAIKLARHAGRKTIKAEDI 60
Query: 92 LWAM 95
A+
Sbjct: 61 ELAV 64
>pdb|1HTA|A Chain A, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
Length = 69
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LPIA I RI+K A +++ DA+ + + + E I SEA + RKTI +D+
Sbjct: 4 LPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 61
Query: 92 LWA 94
A
Sbjct: 62 ELA 64
>pdb|1B67|A Chain A, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
pdb|1B67|B Chain B, Crystal Structure Of The Histone Hmfa From
Methanothermus Fervidus
Length = 68
Score = 33.1 bits (74), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LPIA I RI+K A +++ DA+ + + + E I SEA + RKTI +D+
Sbjct: 3 LPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDI 60
Query: 92 LWA 94
A
Sbjct: 61 ELA 63
>pdb|3ID5|A Chain A, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3ID5|E Chain E, Crystal Structure Of Sulfolobus Solfataricus CD RNP
ASSEMBLED WITH Nop5, Fibrillarin, L7ae And A Split Half
CD RNA
pdb|3PLA|A Chain A, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|B Chain B, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
pdb|3PLA|K Chain K, Crystal Structure Of A Catalytically Active
Substrate-Bound Box CD Rnp From Sulfolobus Solfataricus
Length = 388
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDD 90
Y P + +SRI +++LP K+A D K E ++ +F+ + + +R+ R D
Sbjct: 83 YEPYSKVSRIFRESLP---KVAIDIKFASNE--EDYYNFLHELSLEYTRRKLRSAAQKRD 137
Query: 91 LLWAMATLGFEDYIDPLKIYLTRYRE 116
LL A +D + ++ R RE
Sbjct: 138 LLAIQAVRAMDDIDKTINLFSERLRE 163
>pdb|3ID6|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Nop5 (1-262)
And Fibrillarin Complex
Length = 268
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
Query: 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDD 90
Y P + +SRI +++LP K+A D K E ++ +F+ + + +R+ R D
Sbjct: 83 YEPYSKVSRIFRESLP---KVAIDIKFASNE--EDYYNFLHELSLEYTRRKLRSAAQKRD 137
Query: 91 LLWAMATLGFEDYIDPLKIYLTRYRE 116
LL A +D + ++ R RE
Sbjct: 138 LLAIQAVRAMDDIDKTINLFSERLRE 163
>pdb|3B0C|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form I
pdb|3B0D|T Chain T, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form Ii
pdb|3B0D|B Chain B, Crystal Structure Of The Chicken Cenp-T Histone FoldCENP-W
Complex, Crystal Form Ii
Length = 111
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 51 IAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIY 110
+ +DA + V++C + I+S+ Q RKT+ D+ M G PL +
Sbjct: 25 VTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMPLHVL 84
Query: 111 LTRYREME 118
+ R+ +E
Sbjct: 85 VERHLPLE 92
>pdb|1BRT|A Chain A, Bromoperoxidase A2 Mutant M99t
Length = 277
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 29 DRYLPIANISRIMKKALPA 47
DR LPI N +R+ KALP+
Sbjct: 228 DRTLPIENTARVFHKALPS 246
>pdb|1F1E|A Chain A, Crystal Structure Of The Histone From Methanopyrus
Kandleri
Length = 154
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 40/76 (52%), Gaps = 6/76 (7%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP A I RI ++ + ++++DAK+T+ + V ++ + A +KT+ ++
Sbjct: 5 LPKAAIERIFRQGI-GERRLSQDAKDTIYDFVPTXAEYVANAAKSVLDASGKKTLX-EEH 62
Query: 92 LWAMATL----GFEDY 103
L A+A + G EDY
Sbjct: 63 LKALADVLXVEGVEDY 78
>pdb|1KNV|A Chain A, Bse634i Restriction Endonuclease
pdb|1KNV|B Chain B, Bse634i Restriction Endonuclease
Length = 293
Score = 28.9 bits (63), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 107 LKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLAHQGSFPQGV------NYGNSQ 160
+ + LT ++++EG K ++ K +P+ QL H+G+ + + Y N +
Sbjct: 172 IDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPK 231
Query: 161 SEAQH 165
+E ++
Sbjct: 232 AEFKY 236
>pdb|1BRO|A Chain A, Bromoperoxidase A2
pdb|1BRO|B Chain B, Bromoperoxidase A2
Length = 277
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 29 DRYLPIANISRIMKKALPA 47
DR LPI N +R+ KALP+
Sbjct: 228 DRTLPIENTARVFHKALPS 246
>pdb|1A7U|A Chain A, Chloroperoxidase T
pdb|1A7U|B Chain B, Chloroperoxidase T
pdb|1A8U|A Chain A, Chloroperoxidase TBENZOATE COMPLEX
pdb|1A8U|B Chain B, Chloroperoxidase TBENZOATE COMPLEX
Length = 277
Score = 28.9 bits (63), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 29 DRYLPIANISRIMKKALPA 47
DR LPI N +R+ KALP+
Sbjct: 228 DRTLPIENTARVFHKALPS 246
>pdb|4G91|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans
pdb|4G92|C Chain C, Ccaat-Binding Complex From Aspergillus Nidulans With Dna
Length = 119
Score = 28.5 bits (62), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP+A I ++MK A P I+ +A + FI+ +T A + KR+T+ D+
Sbjct: 42 LPLARIKKVMK-ADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDI 100
Query: 92 LWAMATLGFEDYI 104
A++ D++
Sbjct: 101 AAALSKSDMFDFL 113
>pdb|3VDX|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|3VDX|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|A Chain A, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|B Chain B, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|C Chain C, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|D Chain D, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|E Chain E, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|F Chain F, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|G Chain G, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|H Chain H, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|I Chain I, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|J Chain J, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|K Chain K, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
pdb|4D9J|L Chain L, Structure Of A 16 Nm Protein Cage Designed By Fusing
Symmetric Oligomeric Domains
Length = 456
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 29 DRYLPIANISRIMKKALPA 47
DR LPI N +R+ KALP+
Sbjct: 229 DRTLPIENTARVFHKALPS 247
>pdb|1N1J|B Chain B, Crystal Structure Of The Nf-YbNF-Yc Histone Pair
Length = 97
Score = 28.5 bits (62), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 32 LPIANISRIMKKALPANGK-IAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDD 90
LP+A I +IMK L + K I+ +A + FI+ +T A + KR+T+ +D
Sbjct: 20 LPLARIKKIMK--LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRND 77
Query: 91 LLWAMATLGFEDY 103
+ AMA F+ +
Sbjct: 78 I--AMAITKFDQF 88
>pdb|3V1Z|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V1Z|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V20|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V20|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|C Chain C, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|D Chain D, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|E Chain E, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|F Chain F, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|G Chain G, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|H Chain H, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
Length = 293
Score = 28.5 bits (62), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 32/65 (49%), Gaps = 6/65 (9%)
Query: 107 LKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLAHQGSFPQGV------NYGNSQ 160
+ + LT ++++EG K ++ K +P+ QL H+G+ + + Y N +
Sbjct: 172 IDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPK 231
Query: 161 SEAQH 165
+E ++
Sbjct: 232 AEFKY 236
>pdb|4AWL|C Chain C, The Nf-y Transcription Factor Is Structurally And
Functionally A Sequence Specific Histone
Length = 94
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 32 LPIANISRIMKKALPANGK-IAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDD 90
LP+A I +IMK L + K I+ +A + FI+ +T A + KR+T+ +D
Sbjct: 17 LPLARIKKIMK--LDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRND 74
Query: 91 LLWAMATLGFEDY 103
+ AMA F+ +
Sbjct: 75 I--AMAITKFDQF 85
>pdb|4FKC|A Chain A, Recombinant Prolidase From Thermococcus Sibiricus
Length = 377
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 22/102 (21%), Positives = 39/102 (38%), Gaps = 27/102 (26%)
Query: 15 ESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEA 74
E +P SN + P+ + R+ LP+ G + A ++ + EF
Sbjct: 32 EGALVAPGSNFYYLTGFNPLGTLERLFVLILPSEGLLTAIAPRLYEKELEEF-------- 83
Query: 75 SDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYRE 116
NG+ +LW+ D +P KI+ T+ +E
Sbjct: 84 ------------NGEVVLWS-------DSENPYKIFATKIKE 106
>pdb|2X9J|A Chain A, Structure Of The Mutant D206n Of Phycoerythrobilin
Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
Bound Substrate Biliverdin Ixa
pdb|2X9J|B Chain B, Structure Of The Mutant D206n Of Phycoerythrobilin
Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
Bound Substrate Biliverdin Ixa
Length = 233
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 103 YIDPLKIYLTRYREMEGDTK 122
Y+D K+YLT+Y+EM + K
Sbjct: 167 YLDTFKLYLTKYKEMIDNNK 186
>pdb|2X9I|A Chain A, Structure Of The Mutant D105n Of Phycoerythrobilin
Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
Bound Substrate Biliverdin Ixa
pdb|2X9I|B Chain B, Structure Of The Mutant D105n Of Phycoerythrobilin
Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
Bound Substrate Biliverdin Ixa
pdb|2X9I|C Chain C, Structure Of The Mutant D105n Of Phycoerythrobilin
Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
Bound Substrate Biliverdin Ixa
pdb|2X9I|D Chain D, Structure Of The Mutant D105n Of Phycoerythrobilin
Synthase Pebs From The Cyanophage P-Ssm2 In Complex With
Bound Substrate Biliverdin Ixa
Length = 233
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 103 YIDPLKIYLTRYREMEGDTK 122
Y+D K+YLT+Y+EM + K
Sbjct: 167 YLDTFKLYLTKYKEMIDNNK 186
>pdb|2VGR|A Chain A, Structure Of The Wt-phycoerythrobilin Synthase Pebs From
The Cyanophage P-ssm2 In Complex With The Bound
Substrate Biliverdin Ixa
pdb|2VGR|B Chain B, Structure Of The Wt-phycoerythrobilin Synthase Pebs From
The Cyanophage P-ssm2 In Complex With The Bound
Substrate Biliverdin Ixa
pdb|2VGR|C Chain C, Structure Of The Wt-phycoerythrobilin Synthase Pebs From
The Cyanophage P-ssm2 In Complex With The Bound
Substrate Biliverdin Ixa
pdb|2VGR|D Chain D, Structure Of The Wt-phycoerythrobilin Synthase Pebs From
The Cyanophage P-ssm2 In Complex With The Bound
Substrate Biliverdin Ixa
Length = 233
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 10/20 (50%), Positives = 15/20 (75%)
Query: 103 YIDPLKIYLTRYREMEGDTK 122
Y+D K+YLT+Y+EM + K
Sbjct: 167 YLDTFKLYLTKYKEMIDNNK 186
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 27.3 bits (59), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 99 GFEDYIDPLKIYLTRYREMEGDTKGNAKGGDAS--AKKDGQPNP 140
G + + PL +Y+ +E K A+G DA K DG P P
Sbjct: 701 GHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKP 744
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.128 0.366
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,924,943
Number of Sequences: 62578
Number of extensions: 197870
Number of successful extensions: 325
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 306
Number of HSP's gapped (non-prelim): 31
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 48 (23.1 bits)