BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030647
(174 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VYK4|NFYB8_ARATH Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana
GN=NFYB8 PE=2 SV=1
Length = 173
Score = 267 bits (682), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 139/180 (77%), Positives = 154/180 (85%), Gaps = 13/180 (7%)
Query: 1 MAAEAPASPGG-GSHESG-EQSPRS-NVREQDRYLPIANISRIMKKALPANGKIAKDAKE 57
MA SPGG GSHESG +QSPRS +VREQDR+LPIANISRIMK+ LPANGKIAKDAKE
Sbjct: 1 MAESQAKSPGGCGSHESGGDQSPRSLHVREQDRFLPIANISRIMKRGLPANGKIAKDAKE 60
Query: 58 TVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREM 117
VQECVSEFISF+TSEASDKCQREKRKTINGDDLLWAMATLGFEDY++PLK+YL RYREM
Sbjct: 61 IVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREM 120
Query: 118 EGDTKGNAKGGDASAKKDGQPNPN---TQLAHQGSFPQGVNYGNSQSEAQHMMVPMQGTE 174
EGDTKG+AKGGD +AKKDGQ + N +QLAHQG YGNSQ++ QHMMVPM GT+
Sbjct: 121 EGDTKGSAKGGDPNAKKDGQSSQNGQFSQLAHQGP------YGNSQAQ-QHMMVPMPGTD 173
>sp|Q67XJ2|NFYBA_ARATH Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana
GN=NFYB10 PE=2 SV=1
Length = 176
Score = 253 bits (645), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 126/161 (78%), Positives = 140/161 (86%), Gaps = 7/161 (4%)
Query: 18 EQSPRS-NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASD 76
+QSPRS NVREQDR+LPIANISRIMK+ LP NGKIAKDAKET+QECVSEFISF+TSEASD
Sbjct: 19 DQSPRSLNVREQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASD 78
Query: 77 KCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDG 136
KCQREKRKTINGDDLLWAMATLGFEDYIDPLK+YL RYREMEGDTKG+ KGG++SAK+DG
Sbjct: 79 KCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKGGESSAKRDG 138
Query: 137 QPNPNTQLA---HQGSFPQGVNYGNSQSEAQHMMVPMQGTE 174
QP+ +Q + QGSF QG YGNSQ +MMV M GTE
Sbjct: 139 QPSQVSQFSQVPQQGSFSQG-PYGNSQ--GSNMMVQMPGTE 176
>sp|P25209|NFYB_MAIZE Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2
SV=1
Length = 179
Score = 214 bits (546), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 103/138 (74%), Positives = 114/138 (82%), Gaps = 6/138 (4%)
Query: 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 84
VREQDR+LPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK
Sbjct: 29 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 88
Query: 85 TINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQ- 143
TINGDDLLWAMATLGFEDYI+PLK+YL +YREMEGD+K AK D S KKD +
Sbjct: 89 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDGSIKKDALGHVGASS 148
Query: 144 -----LAHQGSFPQGVNY 156
+ QG++ QG+ Y
Sbjct: 149 SAAEGMGQQGAYNQGMGY 166
>sp|Q60EQ4|NFYB3_ORYSJ Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp.
japonica GN=NFYB3 PE=1 SV=2
Length = 185
Score = 213 bits (543), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 105/142 (73%), Positives = 116/142 (81%), Gaps = 6/142 (4%)
Query: 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 84
VREQDR+LPIANISRIMKKA+PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK
Sbjct: 36 VREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 95
Query: 85 TINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKD------GQP 138
TINGDDLLWAMATLGFEDYI+PLK+YL +YREMEGD+K AK GD S KKD G
Sbjct: 96 TINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDGSVKKDVLGSHGGSS 155
Query: 139 NPNTQLAHQGSFPQGVNYGNSQ 160
+ + Q ++ QG+ Y Q
Sbjct: 156 SSAQGMGQQAAYNQGMGYMQPQ 177
>sp|Q9SLG0|NFYB1_ARATH Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana
GN=NFYB1 PE=1 SV=2
Length = 141
Score = 211 bits (538), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 102/134 (76%), Positives = 113/134 (84%), Gaps = 5/134 (3%)
Query: 3 AEAPASPGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQEC 62
A+ P+SP G ESG +VREQDRYLPIANISRIMKKALP NGKI KDAK+TVQEC
Sbjct: 2 ADTPSSPAGDGGESG-----GSVREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQEC 56
Query: 63 VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTK 122
VSEFISFITSEASDKCQ+EKRKT+NGDDLLWAMATLGFEDY++PLKIYL RYRE+EGD K
Sbjct: 57 VSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNK 116
Query: 123 GNAKGGDASAKKDG 136
G+ K GD S + G
Sbjct: 117 GSGKSGDGSNRDAG 130
>sp|Q5QMG3|NFYB2_ORYSJ Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp.
japonica GN=NFYB2 PE=2 SV=1
Length = 178
Score = 199 bits (506), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 94/124 (75%), Positives = 108/124 (87%)
Query: 12 GSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFIT 71
G ESG VREQDR+LPIANISRIMKKA+PANGKIAKDAKET+QECVSEFISF+T
Sbjct: 19 GHDESGSPPRSGGVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVT 78
Query: 72 SEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDAS 131
SEASDKCQ+EKRKTING+DLL+AM TLGFE+Y+DPLKIYL +YRE+ GD+K ++K GD S
Sbjct: 79 SEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGDSKLSSKAGDGS 138
Query: 132 AKKD 135
KKD
Sbjct: 139 VKKD 142
>sp|O23310|NFYB3_ARATH Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana
GN=NFYB3 PE=2 SV=1
Length = 161
Score = 186 bits (472), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 85/109 (77%), Positives = 97/109 (88%), Gaps = 3/109 (2%)
Query: 12 GSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFIT 71
G H+ G ++ REQDR+LPIAN+SRIMKKALPAN KI+KDAKETVQECVSEFISFIT
Sbjct: 9 GGHKDG---GNASTREQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFIT 65
Query: 72 SEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGD 120
EASDKCQREKRKTINGDDLLWAM TLGFEDY++PLK+YL +YRE+EG+
Sbjct: 66 GEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGE 114
>sp|Q9FGJ3|NFYB2_ARATH Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana
GN=NFYB2 PE=2 SV=1
Length = 190
Score = 181 bits (459), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 80/98 (81%), Positives = 92/98 (93%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
REQDR+LPIAN+SRIMKKALPAN KI+KDAKET+QECVSEFISF+T EASDKCQ+EKRKT
Sbjct: 26 REQDRFLPIANVSRIMKKALPANAKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKT 85
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKG 123
INGDDLLWAM TLGFEDY++PLK+YL R+RE+EG+ G
Sbjct: 86 INGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTG 123
>sp|Q65XK1|NFYB4_ORYSJ Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp.
japonica GN=NFYB4 PE=2 SV=2
Length = 143
Score = 178 bits (452), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 83/123 (67%), Positives = 102/123 (82%), Gaps = 1/123 (0%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
+EQDR+LPIANI RIM++A+P NGKIAKD+KE+VQECVSEFISFITSEASDKC +EKRKT
Sbjct: 21 KEQDRFLPIANIGRIMRRAVPENGKIAKDSKESVQECVSEFISFITSEASDKCLKEKRKT 80
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLA 145
INGDDL+W+M TLGFEDY++PLK+YL YRE EGDTKG ++ + KKD N + +
Sbjct: 81 INGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGDTKG-SRASELPVKKDVVLNGDPGSS 139
Query: 146 HQG 148
+G
Sbjct: 140 FEG 142
>sp|Q9SIT9|NFYB7_ARATH Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana
GN=NFYB7 PE=2 SV=1
Length = 215
Score = 174 bits (441), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/135 (62%), Positives = 100/135 (74%), Gaps = 9/135 (6%)
Query: 1 MAAEAPASPGG--GSHESGEQSPRSNV-------REQDRYLPIANISRIMKKALPANGKI 51
M E+P G G E+ SP S +EQDR+LPIAN+ RIMKK LP NGKI
Sbjct: 1 MTEESPEEDHGSPGVAETNPGSPSSKTNNNNNNNKEQDRFLPIANVGRIMKKVLPGNGKI 60
Query: 52 AKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYL 111
+KDAKETVQECVSEFISF+T EASDKCQREKRKTINGDD++WA+ TLGFEDY+ PLK+YL
Sbjct: 61 SKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYL 120
Query: 112 TRYREMEGDTKGNAK 126
+YR+ EG+ + K
Sbjct: 121 CKYRDTEGEKVNSPK 135
>sp|Q54WV0|NFYB_DICDI Nuclear transcription factor Y subunit beta OS=Dictyostelium
discoideum GN=nfyB PE=3 SV=1
Length = 490
Score = 167 bits (422), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 74/98 (75%), Positives = 88/98 (89%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
REQDRYLPIANI RIMKKALP N K+AKDAKETVQ+CVSEFISFITSEASDKCQ+EKRKT
Sbjct: 47 REQDRYLPIANIIRIMKKALPNNAKVAKDAKETVQDCVSEFISFITSEASDKCQQEKRKT 106
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKG 123
ING+D++ AM +LGFE+Y++PLK+YL +YRE E ++
Sbjct: 107 INGEDIIAAMVSLGFENYVEPLKVYLLKYRETEKNSNN 144
>sp|P63140|NFYB_RAT Nuclear transcription factor Y subunit beta OS=Rattus norvegicus
GN=Nfyb PE=1 SV=1
Length = 207
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 105/147 (71%), Gaps = 5/147 (3%)
Query: 22 RSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQRE 81
+ + REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSEAS++C +E
Sbjct: 49 KESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQE 108
Query: 82 KRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPN 141
KRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE KG G A + DG
Sbjct: 109 KRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA---MKGEKGIGGAVSATDGLSEEL 165
Query: 142 TQLAHQGSFPQGVNYGNSQSEAQHMMV 168
T+ A P G+ + Q Q++MV
Sbjct: 166 TEEAFTNQLPAGLITADGQQ--QNVMV 190
>sp|P63139|NFYB_MOUSE Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb
PE=1 SV=1
Length = 207
Score = 164 bits (415), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 105/147 (71%), Gaps = 5/147 (3%)
Query: 22 RSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQRE 81
+ + REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSEAS++C +E
Sbjct: 49 KESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQE 108
Query: 82 KRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPN 141
KRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE KG G A + DG
Sbjct: 109 KRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA---MKGEKGIGGAVSATDGLSEEL 165
Query: 142 TQLAHQGSFPQGVNYGNSQSEAQHMMV 168
T+ A P G+ + Q Q++MV
Sbjct: 166 TEEAFTNQLPAGLITADGQQ--QNVMV 190
>sp|P25208|NFYB_HUMAN Nuclear transcription factor Y subunit beta OS=Homo sapiens GN=NFYB
PE=1 SV=2
Length = 207
Score = 163 bits (412), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 104/147 (70%), Gaps = 5/147 (3%)
Query: 22 RSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQRE 81
+ + REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSEAS++C +E
Sbjct: 49 KESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQE 108
Query: 82 KRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPN 141
KRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE KG G A DG
Sbjct: 109 KRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA---MKGEKGIGGAVTATDGLSEEL 165
Query: 142 TQLAHQGSFPQGVNYGNSQSEAQHMMV 168
T+ A P G+ + Q Q++MV
Sbjct: 166 TEEAFTNQLPAGLITTDGQQ--QNVMV 190
>sp|Q32KW0|NFYB_BOVIN Nuclear transcription factor Y subunit beta OS=Bos taurus GN=NFYB
PE=2 SV=1
Length = 207
Score = 162 bits (411), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 81/147 (55%), Positives = 103/147 (70%), Gaps = 5/147 (3%)
Query: 22 RSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQRE 81
+ + REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSEAS++C +E
Sbjct: 49 KESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQE 108
Query: 82 KRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPN 141
KRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE KG G A DG
Sbjct: 109 KRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA---MKGEKGIGGAVTATDGLSEEL 165
Query: 142 TQLAHQGSFPQGVNYGNSQSEAQHMMV 168
T A P G+ + Q Q++MV
Sbjct: 166 TDEAFTNQLPAGLITADGQQ--QNVMV 190
>sp|Q6RG77|NFYB_HORSE Nuclear transcription factor Y subunit beta OS=Equus caballus
GN=NFYB PE=2 SV=1
Length = 207
Score = 161 bits (408), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 103/147 (70%), Gaps = 5/147 (3%)
Query: 22 RSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQRE 81
+ + REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSEAS++C +E
Sbjct: 49 KESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQE 108
Query: 82 KRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPN 141
KRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE KG G A DG
Sbjct: 109 KRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA---MKGEKGIGGAVTATDGLSEEL 165
Query: 142 TQLAHQGSFPQGVNYGNSQSEAQHMMV 168
+ A P G+ + Q Q++MV
Sbjct: 166 AEEAFTNQLPAGLITADGQQ--QNVMV 190
>sp|P25207|NFYB_CHICK Nuclear transcription factor Y subunit beta OS=Gallus gallus
GN=NFYB PE=2 SV=2
Length = 205
Score = 160 bits (406), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 80/147 (54%), Positives = 103/147 (70%), Gaps = 5/147 (3%)
Query: 22 RSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQRE 81
+ + REQD YLPIAN++RIMK A+P GKIAKDAKE VQECVSEFISFITSEAS++C +E
Sbjct: 47 KESFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQE 106
Query: 82 KRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPN 141
KRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE KG G DG
Sbjct: 107 KRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREA---MKGEKGIGGTVTTGDGLSEEL 163
Query: 142 TQLAHQGSFPQGVNYGNSQSEAQHMMV 168
T+ A P G+ + Q Q++MV
Sbjct: 164 TEEAFTNQLPAGLITTDGQQ--QNVMV 188
>sp|P25210|NFYB_PETMA Nuclear transcription factor Y subunit beta OS=Petromyzon marinus
GN=NFYB PE=2 SV=1
Length = 209
Score = 158 bits (400), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 84/167 (50%), Positives = 112/167 (67%), Gaps = 9/167 (5%)
Query: 3 AEAPASPGGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQEC 62
AE + G G + P REQD YLPIAN++RIMK ++P++GKIAKDAKE VQEC
Sbjct: 34 AEGSLASGDHDESCGSKDPY---REQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQEC 90
Query: 63 VSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYRE-MEGDT 121
VSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK YL +YRE M+G+
Sbjct: 91 VSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKQYLQKYRESMKGEK 150
Query: 122 KGNAKGGDASAKKDGQPNPNTQLAHQGSFPQGVNYGNSQSEAQHMMV 168
NA D P T+ + G P + + + Q++MV
Sbjct: 151 GINAT---VVTTTDAIPEELTEESFSG--PLATSIITADGQQQNVMV 192
>sp|Q84W66|NFYB6_ARATH Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana
GN=NFYB6 PE=1 SV=2
Length = 234
Score = 157 bits (397), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 66/107 (61%), Positives = 89/107 (83%)
Query: 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRK 84
VREQDR++PIAN+ RIM++ LPA+ KI+ D+KET+QECVSE+ISFIT EA+++CQRE+RK
Sbjct: 56 VREQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRK 115
Query: 85 TINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDAS 131
TI +D+LWAM+ LGF+DYI+PL +YL RYRE+EG+ + G S
Sbjct: 116 TITAEDVLWAMSKLGFDDYIEPLTLYLHRYRELEGERGVSCSAGSVS 162
>sp|O82248|NFYB5_ARATH Nuclear transcription factor Y subunit B-5 OS=Arabidopsis thaliana
GN=NFYB5 PE=2 SV=1
Length = 160
Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/119 (62%), Positives = 90/119 (75%), Gaps = 1/119 (0%)
Query: 15 ESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEA 74
E +Q V+EQDR LPIAN+ RIMK LPAN K++K+AKET+QECVSEFISF+T EA
Sbjct: 39 EDQQQEESMMVKEQDRLLPIANVGRIMKNILPANAKVSKEAKETMQECVSEFISFVTGEA 98
Query: 75 SDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDT-KGNAKGGDASA 132
SDKC +EKRKT+NGDD+ WAMA LGF+DY LK YL RYR +EG+ + KGG S+
Sbjct: 99 SDKCHKEKRKTVNGDDICWAMANLGFDDYAAQLKKYLHRYRVLEGEKPNHHGKGGPKSS 157
>sp|Q9SFD8|NFYB9_ARATH Nuclear transcription factor Y subunit B-9 OS=Arabidopsis thaliana
GN=NFYB9 PE=1 SV=2
Length = 238
Score = 154 bits (388), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 65/112 (58%), Positives = 93/112 (83%), Gaps = 1/112 (0%)
Query: 18 EQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDK 77
+Q P REQD+Y+PIAN+ RIM+K LP++ KI+ DAKET+QECVSE+ISF+T EA+++
Sbjct: 50 QQQPPCVAREQDQYMPIANVIRIMRKTLPSHAKISDDAKETIQECVSEYISFVTGEANER 109
Query: 78 CQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGD 129
CQRE+RKTI +D+LWAM+ LGF++Y+DPL +++ RYRE+E D +G+A G+
Sbjct: 110 CQREQRKTITAEDILWAMSKLGFDNYVDPLTVFINRYREIETD-RGSALRGE 160
>sp|P13434|HAP3_YEAST Transcriptional activator HAP3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=HAP3 PE=1 SV=1
Length = 144
Score = 141 bits (356), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 62/110 (56%), Positives = 84/110 (76%)
Query: 10 GGGSHESGEQSPRSNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISF 69
GG + SG S +REQDR+LPI N++R+MK LP + K++KDAKE +QECVSE ISF
Sbjct: 20 GGNASSSGSLQQISTLREQDRWLPINNVARLMKNTLPPSAKVSKDAKECMQECVSELISF 79
Query: 70 ITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYREMEG 119
+TSEASD+C +KRKTING+D+L ++ LGFE+Y + LKIYL +YR+ +
Sbjct: 80 VTSEASDRCAADKRKTINGEDILISLHALGFENYAEVLKIYLAKYRQQQA 129
>sp|O04027|NFYB4_ARATH Nuclear transcription factor Y subunit B-4 OS=Arabidopsis thaliana
GN=NFYB4 PE=1 SV=1
Length = 139
Score = 139 bits (351), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 65/136 (47%), Positives = 97/136 (71%), Gaps = 2/136 (1%)
Query: 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTI 86
++DR LPIAN+ R+MK+ LP+N KI+K+AK+TVQEC +EFISF+T EAS+KC RE RKT+
Sbjct: 3 DEDRLLPIANVGRLMKQILPSNAKISKEAKQTVQECATEFISFVTCEASEKCHRENRKTV 62
Query: 87 NGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGDASAKKDGQPNPNTQLAH 146
NGDD+ WA++TLG ++Y D + +L +YRE E + + KG + S + + N + + +
Sbjct: 63 NGDDIWWALSTLGLDNYADAVGRHLHKYREAERERTEHNKGSNDSG-NEKETNTRSDVQN 121
Query: 147 QGS-FPQGVNYGNSQS 161
Q + F + V G+S S
Sbjct: 122 QSTKFIRVVEKGSSSS 137
>sp|P40914|HAP3_KLULA Transcriptional activator HAP3 OS=Kluyveromyces lactis (strain ATCC
8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 /
WM37) GN=HAP3 PE=3 SV=1
Length = 205
Score = 134 bits (337), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 57/93 (61%), Positives = 75/93 (80%)
Query: 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTI 86
EQDR+LPI N++R+MK LPA K++KDAKE +QECVSEFISF+TSEA D+C KRKTI
Sbjct: 22 EQDRWLPINNVARLMKNTLPATTKVSKDAKECMQECVSEFISFVTSEACDRCTSGKRKTI 81
Query: 87 NGDDLLWAMATLGFEDYIDPLKIYLTRYREMEG 119
NG+D+L ++ LGFE+Y + LKIYL +YR+ +
Sbjct: 82 NGEDILLSLHALGFENYAEVLKIYLAKYRQQQA 114
>sp|P36611|HAP3_SCHPO Transcriptional activator hap3 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=hap3 PE=3 SV=1
Length = 116
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 57/88 (64%), Positives = 74/88 (84%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LPIAN++RIMK ALP N KI+K+AK+ VQ+CVSEFISF+T EAS++C +EKRKTI G+D+
Sbjct: 12 LPIANVARIMKSALPENAKISKEAKDCVQDCVSEFISFVTGEASEQCTQEKRKTITGEDV 71
Query: 92 LWAMATLGFEDYIDPLKIYLTRYREMEG 119
L A+ TLGFE+Y + LKI LT+YRE +
Sbjct: 72 LLALNTLGFENYAEVLKISLTKYREQQA 99
>sp|P25211|NFYB_XENLA Nuclear transcription factor Y subunit beta (Fragment) OS=Xenopus
laevis GN=nfyb PE=2 SV=1
Length = 122
Score = 103 bits (258), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 47/74 (63%), Positives = 62/74 (83%), Gaps = 3/74 (4%)
Query: 59 VQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYRE-M 117
VQECVSEFISFITSEAS++C +EKRKTING+D+L+AM+TLGF+ Y++PLK+YL ++RE M
Sbjct: 1 VQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPLKLYLQKFREAM 60
Query: 118 EGD--TKGNAKGGD 129
+G+ G GD
Sbjct: 61 KGEKGIGGTVTTGD 74
>sp|Q6Z348|NFYB1_ORYSJ Nuclear transcription factor Y subunit B-1 OS=Oryza sativa subsp.
japonica GN=NFYB1 PE=1 SV=2
Length = 186
Score = 88.2 bits (217), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 37/87 (42%), Positives = 54/87 (62%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP+AN+ R++KK LP KI AK +C EF+ F+ EAS+K + E R+T+ +D
Sbjct: 34 LPMANLVRLIKKVLPGKAKIGGAAKGLTHDCAVEFVGFVGDEASEKAKAEHRRTVAPEDY 93
Query: 92 LWAMATLGFEDYIDPLKIYLTRYREME 118
L + LGF+ Y+DP+ Y+ YRE E
Sbjct: 94 LGSFGDLGFDRYVDPMDAYIHGYREFE 120
>sp|P49592|NC2B_ARATH Protein Dr1 homolog OS=Arabidopsis thaliana GN=DR1 PE=2 SV=1
Length = 159
Score = 73.6 bits (179), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 30/78 (38%), Positives = 56/78 (71%)
Query: 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN 87
+D LP A +++I+K+ LP + ++A+DA++ + EC EFI+ ++SE++D C +E ++TI
Sbjct: 12 EDASLPKATMTKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNDVCNKEDKRTIA 71
Query: 88 GDDLLWAMATLGFEDYID 105
+ +L A+ LGF +YI+
Sbjct: 72 PEHVLKALQVLGFGEYIE 89
>sp|Q55DJ5|NC2B_DICDI Protein Dr1 homolog OS=Dictyostelium discoideum GN=dr1 PE=3 SV=1
Length = 178
Score = 72.0 bits (175), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 53/80 (66%)
Query: 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKR 83
N +E + LP A +S+++K+ LP + K + + ++ + EC EFI I+SEA+D C RE++
Sbjct: 5 NDKEDNLSLPKATVSKLIKEMLPQDVKCSNETRDLILECCVEFIHLISSEANDICGREQK 64
Query: 84 KTINGDDLLWAMATLGFEDY 103
+TI + ++ A+ LGF DY
Sbjct: 65 RTIAAEHVIKALTELGFSDY 84
>sp|Q9JKP7|DPOE3_MOUSE DNA polymerase epsilon subunit 3 OS=Mus musculus GN=Pole3 PE=2 SV=1
Length = 145
Score = 70.9 bits (172), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/104 (38%), Positives = 60/104 (57%), Gaps = 3/104 (2%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ + KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYREMEGDTKGNAKGGD 129
+N D+L AM + F+ +I PLK L YR D KG + +
Sbjct: 64 LNASDVLSAMEEMEFQRFITPLKEALEAYRR---DEKGKKEASE 104
>sp|Q5R4W3|DPOE3_PONAB DNA polymerase epsilon subunit 3 OS=Pongo abelii GN=POLE3 PE=2 SV=1
Length = 147
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ + KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
+N D+L AM + F+ ++ PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q9NRF9|DPOE3_HUMAN DNA polymerase epsilon subunit 3 OS=Homo sapiens GN=POLE3 PE=1 SV=1
Length = 147
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ + KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
+N D+L AM + F+ ++ PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q3SZN5|DPOE3_BOVIN DNA polymerase epsilon subunit 3 OS=Bos taurus GN=POLE3 PE=2 SV=1
Length = 147
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ + KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
+N D+L AM + F+ ++ PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q642A5|DPOE3_RAT DNA polymerase epsilon subunit 3 OS=Rattus norvegicus GN=Pole3 PE=2
SV=1
Length = 145
Score = 69.3 bits (168), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 55/90 (61%)
Query: 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKT 85
R +D LP A I+RI+K+ALP I+K+A+ + S F+ + TS A++ + KRKT
Sbjct: 4 RPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGKRKT 63
Query: 86 INGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
+N D+L AM + F+ ++ PLK L YR
Sbjct: 64 LNASDVLSAMEEMEFQRFVTPLKEALEAYR 93
>sp|Q5XI68|NC2B_RAT Protein Dr1 OS=Rattus norvegicus GN=Dr1 PE=2 SV=1
Length = 176
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D +P A I++++K+ LP N ++A DA+E V C +EFI I+SEA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 89 DDLLWAMATLGFEDYIDPLKIYL 111
+ ++ A+ +LGF YI +K L
Sbjct: 69 EHVIQALESLGFGSYISEVKEVL 91
>sp|Q91WV0|NC2B_MOUSE Protein Dr1 OS=Mus musculus GN=Dr1 PE=2 SV=1
Length = 176
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D +P A I++++K+ LP N ++A DA+E V C +EFI I+SEA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 89 DDLLWAMATLGFEDYIDPLKIYL 111
+ ++ A+ +LGF YI +K L
Sbjct: 69 EHVIQALESLGFGSYISEVKEVL 91
>sp|Q01658|NC2B_HUMAN Protein Dr1 OS=Homo sapiens GN=DR1 PE=1 SV=1
Length = 176
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D +P A I++++K+ LP N ++A DA+E V C +EFI I+SEA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 89 DDLLWAMATLGFEDYIDPLKIYL 111
+ ++ A+ +LGF YI +K L
Sbjct: 69 EHVIQALESLGFGSYISEVKEVL 91
>sp|Q5ZMV3|NC2B_CHICK Protein Dr1 OS=Gallus gallus GN=DR1 PE=2 SV=1
Length = 176
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D +P A I++++K+ LP N ++A DA+E V C +EFI I+SEA++ C + ++KTI+
Sbjct: 10 DLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISP 68
Query: 89 DDLLWAMATLGFEDYIDPLKIYL 111
+ ++ A+ +LGF YI +K L
Sbjct: 69 EHVIQALESLGFGSYISEVKEVL 91
>sp|Q9VJQ5|NC2B_DROME Protein Dr1 OS=Drosophila melanogaster GN=NC2beta PE=1 SV=1
Length = 183
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 49/72 (68%), Gaps = 1/72 (1%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP A+I++I+K+ +P ++A +++E + C SEFI I+SEA++ C +KTIN + +
Sbjct: 20 LPRASINKIIKELVP-TVRVANESRELILNCCSEFIHLISSEANEVCNMRNKKTINAEHV 78
Query: 92 LWAMATLGFEDY 103
L A+ LGF DY
Sbjct: 79 LEALERLGFHDY 90
>sp|O14348|NC2B_SCHPO Negative cofactor 2 complex subunit beta OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=ncb2 PE=3 SV=1
Length = 161
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 47/73 (64%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP A + +++ LP + K+A++ + EC EFI ++SEA++ C++E +KTI + +
Sbjct: 12 LPKATVQKMVSDILPVDLTFTKEARDLLIECCVEFIHLVSSEANEICEKEAKKTIAAEHI 71
Query: 92 LWAMATLGFEDYI 104
+ A+ L F++YI
Sbjct: 72 IKALENLEFKEYI 84
>sp|Q92317|NCB2_YEAST Negative cofactor 2 complex subunit beta OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=NCB2 PE=1
SV=1
Length = 146
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP A + +++ + L + KDA+E + EFI ++S AS+ E +KTI + +
Sbjct: 10 LPKATVQKMISEILDQDLMFTKDAREIIINSGIEFIMILSSMASEMADNEAKKTIAPEHV 69
Query: 92 LWAMATLGFEDYIDPLKIYLTRYR 115
+ A+ L + ++I L+ L ++
Sbjct: 70 IKALEELEYNEFIPFLEEILLNFK 93
>sp|P87174|DPB4_SCHPO DNA polymerase epsilon subunit D OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb4 PE=1 SV=1
Length = 210
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D LP + I R++K LP + K+A + + + F+SF+TS + + RK +
Sbjct: 14 DLALPRSIIMRLVKGVLPEKSLVQKEALKAMINSATLFVSFLTSASGEIATNNNRKILMP 73
Query: 89 DDLLWAMATLGFEDYIDPLKIYLTRY 114
D+L A+ + + ++ LK +L Y
Sbjct: 74 QDVLNALDEIEYPEFSKTLKKHLEAY 99
>sp|Q75JQ9|DPOE3_DICDI DNA polymerase epsilon subunit 3 OS=Dictyostelium discoideum
GN=pole3 PE=3 SV=1
Length = 138
Score = 41.2 bits (95), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 45/84 (53%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP A ++RI+K +LP AK+++ + + +I ++T+ + D R TI+ D+
Sbjct: 7 LPGAIVNRIIKASLPEGVLCAKESRLAIAKAAKVWIHYLTAASIDFSSHSGRSTISPKDV 66
Query: 92 LWAMATLGFEDYIDPLKIYLTRYR 115
A+ + FE++ L+ YL +
Sbjct: 67 FQAIEEIDFENFKPQLEEYLAALK 90
>sp|Q6CHS6|DPB4_YARLI DNA polymerase epsilon subunit D OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB4 PE=3 SV=1
Length = 163
Score = 39.3 bits (90), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTING 88
D P + I + K+ LP + I+KDA +Q + F+S++ S + + RK I
Sbjct: 34 DLLYPKSTIKNLAKETLPDDAIISKDALTAIQRAATLFVSYMASHGNASAEAGGRKKITP 93
Query: 89 DDLLWAMATLGFEDYI 104
D+ A+ + ++
Sbjct: 94 QDVFVALKDVDLAQFV 109
>sp|Q6BIP4|DPB4_DEBHA DNA polymerase epsilon subunit D OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB4 PE=3 SV=2
Length = 247
Score = 38.5 bits (88), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 7/91 (7%)
Query: 31 YLPIANISRIMKKALPA-------NGKIAKDAKETVQECVSEFISFITSEASDKCQREKR 83
P A + ++ K + A N +AKD+ +Q + F+S + +A + E R
Sbjct: 30 LFPRATVQKLAKNIMNASSDEGASNMILAKDSMIALQRSSTVFVSHLMFQARQISKDEGR 89
Query: 84 KTINGDDLLWAMATLGFEDYIDPLKIYLTRY 114
KTIN D+L A+ F +I +K L+ +
Sbjct: 90 KTINAQDILSALEKAEFSGFIPEVKQKLSVF 120
>sp|O29910|HAF1_ARCFU Probable archaeal histone A1-1 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-1 PE=3 SV=1
Length = 72
Score = 35.4 bits (80), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP+A + R+++KA ++++DAK + + + E+ I +A++ + RKT+ DD+
Sbjct: 8 LPLAPVERLLRKA--GASRVSEDAKVELAKAIEEYAMQIGKKAAELAKHAGRKTVKVDDI 65
Query: 92 LWAMATL 98
A+ L
Sbjct: 66 KLALREL 72
>sp|Q9Y8I1|HARA_PYRKO Archaeal histone A OS=Pyrococcus kodakaraensis (strain ATCC
BAA-918 / JCM 12380 / KOD1) GN=hpkA PE=3 SV=1
Length = 67
Score = 34.7 bits (78), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 38/64 (59%), Gaps = 2/64 (3%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LPIA + R+++KA ++++DA + + E + E+ ++ +A D + RKT+ +D+
Sbjct: 4 LPIAPVDRLIRKA--GAERVSEDAAKVLAEYLEEYAIELSKKAVDFARHAGRKTVKAEDI 61
Query: 92 LWAM 95
A+
Sbjct: 62 KLAI 65
>sp|O28779|HAF2_ARCFU Probable archaeal histone A1-2 OS=Archaeoglobus fulgidus (strain
ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=hpyA1-2 PE=3 SV=1
Length = 67
Score = 33.5 bits (75), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LP+A + R+++KA +++ DA E + E + ++ + +A + + RKT+ DD+
Sbjct: 4 LPMAPVDRLIRKA--GAERVSADAVEKMVEVLEDYAITVAKKAVEIAKHSGRKTVTADDI 61
Query: 92 LWAM 95
A+
Sbjct: 62 KLAL 65
>sp|P19267|HMFB_METFE DNA-binding protein HMf-2 OS=Methanothermus fervidus GN=hmfB PE=1
SV=1
Length = 69
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91
LPIA I RI+K A +++ DA+ T+ + + E I SEA + RKTI +D+
Sbjct: 3 LPIAPIGRIIKDA--GAERVSDDARITLAKILEEMGRDIASEAIKLARHAGRKTIKAEDI 60
Query: 92 LWAM 95
A+
Sbjct: 61 ELAV 64
>sp|Q04603|DPB4_YEAST DNA polymerase epsilon subunit D OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPB4 PE=1 SV=1
Length = 196
Score = 33.5 bits (75), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/97 (23%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 22 RSNVREQDRYLPIANISRIMKKALPANGK---IAKDAKETVQECVSEFISFITSEASDKC 78
+ N+ QD P + I + ++ +GK I KDA +Q + F++ + A +
Sbjct: 23 QENITIQDLLFPKSTIVNLAREVPQQSGKKLLINKDASLALQRGATVFVNHLLLFAREIA 82
Query: 79 QREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRYR 115
+ + +K+ + DD+L A+ +G P++ L Y+
Sbjct: 83 KSQDKKSCSVDDVLSALDHIGHSALKGPVRDKLDEYQ 119
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.310 0.127 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 68,163,030
Number of Sequences: 539616
Number of extensions: 2749158
Number of successful extensions: 5003
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 4937
Number of HSP's gapped (non-prelim): 94
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 57 (26.6 bits)