Query 030647
Match_columns 174
No_of_seqs 163 out of 608
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 03:17:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030647.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030647hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2byk_B Chrac-14; nucleosome sl 100.0 1.3E-31 4.3E-36 207.8 11.3 105 26-130 4-108 (128)
2 1jfi_B DR1 protein, transcript 100.0 9.1E-32 3.1E-36 219.3 10.8 99 24-123 8-106 (179)
3 1n1j_A NF-YB; histone-like PAI 100.0 2.1E-30 7.2E-35 189.8 10.7 93 24-116 1-93 (93)
4 3b0c_W CENP-W, centromere prot 99.9 5E-23 1.7E-27 146.0 7.7 69 29-98 2-70 (76)
5 1f1e_A Histone fold protein; a 99.8 1.6E-21 5.3E-26 155.6 7.9 75 30-105 3-77 (154)
6 1b67_A Protein (histone HMFA); 99.8 1.1E-19 3.9E-24 125.4 7.4 66 31-98 2-67 (68)
7 3b0c_T CENP-T, centromere prot 99.8 2.4E-19 8.1E-24 135.9 8.7 91 27-119 3-95 (111)
8 2byk_A Chrac-16; nucleosome sl 99.7 7.2E-19 2.4E-23 138.2 3.4 97 27-124 15-115 (140)
9 1f1e_A Histone fold protein; a 99.7 1.4E-17 4.9E-22 132.7 8.6 73 23-97 74-146 (154)
10 4g92_C HAPE; transcription fac 99.7 9.1E-17 3.1E-21 122.7 7.6 77 27-104 37-113 (119)
11 1n1j_B NF-YC; histone-like PAI 99.7 1.2E-16 4E-21 117.9 6.5 80 26-106 14-93 (97)
12 1id3_B Histone H4; nucleosome 99.6 2.9E-16 1E-20 117.3 8.0 78 24-103 21-98 (102)
13 2hue_C Histone H4; mini beta s 99.6 2.2E-16 7.4E-21 113.9 6.6 77 25-103 4-80 (84)
14 1ku5_A HPHA, archaeal histon; 99.6 2E-15 6.7E-20 105.0 7.4 64 31-96 6-69 (70)
15 1tzy_D Histone H4-VI; histone- 99.6 3.2E-15 1.1E-19 111.4 8.1 78 24-103 22-99 (103)
16 2yfw_B Histone H4, H4; cell cy 99.6 4.4E-15 1.5E-19 110.7 7.4 78 24-103 22-99 (103)
17 1jfi_A Transcription regulator 99.3 7.3E-13 2.5E-17 97.9 5.3 78 29-107 9-86 (98)
18 2hue_B Histone H3; mini beta s 99.2 1.2E-10 3.9E-15 83.3 8.4 71 29-99 1-74 (77)
19 2yfv_A Histone H3-like centrom 99.0 3.6E-10 1.2E-14 84.3 6.6 71 26-96 22-98 (100)
20 3nqj_A Histone H3-like centrom 99.0 4.5E-10 1.5E-14 81.1 6.9 70 30-99 2-76 (82)
21 3nqu_A Histone H3-like centrom 99.0 8E-10 2.7E-14 86.9 6.3 75 26-100 56-135 (140)
22 1tzy_C Histone H3; histone-fol 99.0 1.1E-09 3.9E-14 85.6 7.0 74 26-99 57-133 (136)
23 3r45_A Histone H3-like centrom 99.0 7.8E-10 2.7E-14 88.3 6.0 73 26-98 72-149 (156)
24 1taf_B TFIID TBP associated fa 98.8 2.3E-08 8E-13 70.1 8.0 65 30-96 5-69 (70)
25 4dra_A Centromere protein S; D 98.8 1.4E-08 4.8E-13 77.2 7.3 77 36-118 32-109 (113)
26 3vh5_A CENP-S; histone fold, c 98.8 1.2E-08 4.1E-13 80.1 6.8 75 36-116 24-99 (140)
27 3v9r_A MHF1, uncharacterized p 98.7 3.1E-08 1.1E-12 72.5 6.9 62 36-97 17-79 (90)
28 3b0b_B CENP-S, centromere prot 98.6 5.7E-08 1.9E-12 73.2 6.9 63 36-98 24-87 (107)
29 2nqb_C Histone H2A; nucleosome 98.5 4.7E-07 1.6E-11 69.4 7.8 69 28-97 20-88 (123)
30 1f66_C Histone H2A.Z; nucleoso 98.5 4.6E-07 1.6E-11 70.0 7.7 70 28-97 24-93 (128)
31 1tzy_A Histone H2A-IV; histone 98.4 5.8E-07 2E-11 69.5 7.7 69 28-97 22-90 (129)
32 2f8n_G Core histone macro-H2A. 98.4 7.1E-07 2.4E-11 68.2 7.8 69 28-97 19-87 (120)
33 1id3_C Histone H2A.1; nucleoso 98.4 5.9E-07 2E-11 69.6 7.2 69 28-97 22-90 (131)
34 1taf_A TFIID TBP associated fa 98.4 1.6E-06 5.3E-11 60.4 8.1 61 35-97 5-65 (68)
35 2f8n_K Histone H2A type 1; nuc 98.4 9.2E-07 3.2E-11 70.0 7.7 69 28-97 41-109 (149)
36 2ly8_A Budding yeast chaperone 98.4 6E-07 2E-11 69.0 6.4 53 50-102 64-116 (121)
37 2nqb_D Histone H2B; nucleosome 98.3 1.8E-06 6.2E-11 66.5 7.3 67 35-102 37-103 (123)
38 1tzy_B Histone H2B; histone-fo 98.3 2.4E-06 8.1E-11 66.1 7.3 67 35-102 40-106 (126)
39 2jss_A Chimera of histone H2B. 98.2 3.3E-06 1.1E-10 68.7 7.7 69 29-97 103-171 (192)
40 2l5a_A Histone H3-like centrom 98.1 3.3E-06 1.1E-10 71.2 6.5 71 29-99 9-85 (235)
41 4dra_E Centromere protein X; D 98.1 1.7E-05 5.7E-10 57.4 8.4 70 29-98 10-80 (84)
42 2l5a_A Histone H3-like centrom 98.0 3.2E-06 1.1E-10 71.3 4.3 59 39-99 169-227 (235)
43 2jss_A Chimera of histone H2B. 98.0 2.1E-05 7E-10 64.0 7.9 68 35-103 7-74 (192)
44 3b0b_C CENP-X, centromere prot 97.9 6E-05 2.1E-09 54.0 8.1 72 27-98 4-76 (81)
45 1h3o_B Transcription initiatio 97.8 0.0001 3.5E-09 52.3 8.2 67 30-97 4-70 (76)
46 1bh9_B TAFII28; histone fold, 97.5 0.00055 1.9E-08 49.7 8.0 67 31-99 16-83 (89)
47 2ly8_A Budding yeast chaperone 97.1 0.0017 5.8E-08 49.7 7.9 89 31-121 1-98 (121)
48 3v9r_B MHF2, uncharacterized p 96.7 0.0024 8.3E-08 46.4 5.4 48 32-79 2-50 (88)
49 3uk6_A RUVB-like 2; hexameric 91.2 0.41 1.4E-05 39.6 6.2 66 32-97 259-329 (368)
50 3ksy_A SOS-1, SON of sevenless 85.6 2.4 8.3E-05 41.6 8.4 66 29-96 102-167 (1049)
51 1fnn_A CDC6P, cell division co 85.3 3.5 0.00012 33.7 8.1 76 32-107 193-283 (389)
52 2c9o_A RUVB-like 1; hexameric 84.2 1.6 5.5E-05 38.1 5.9 66 32-97 366-436 (456)
53 2v1u_A Cell division control p 84.2 1.5 5E-05 35.8 5.3 67 34-100 203-278 (387)
54 3kw6_A 26S protease regulatory 79.8 1.6 5.4E-05 29.1 3.3 43 56-98 27-73 (78)
55 2qby_A CDC6 homolog 1, cell di 78.0 6.6 0.00023 31.7 7.1 74 32-105 197-279 (386)
56 1k6k_A ATP-dependent CLP prote 77.4 4.9 0.00017 29.0 5.6 33 51-95 2-34 (143)
57 2i7a_A Calpain 13; calcium-dep 77.0 21 0.00072 26.8 9.9 28 73-101 80-111 (174)
58 3k1j_A LON protease, ATP-depen 74.4 16 0.00055 33.1 9.3 49 49-97 313-374 (604)
59 1khy_A CLPB protein; alpha hel 74.3 7.5 0.00026 28.1 5.9 38 50-99 5-42 (148)
60 3fh2_A Probable ATP-dependent 72.6 4.2 0.00014 29.9 4.2 37 50-98 6-42 (146)
61 3vlf_B 26S protease regulatory 72.2 3.5 0.00012 28.3 3.5 34 67-100 40-73 (88)
62 3aji_B S6C, proteasome (prosom 72.0 3.3 0.00011 27.8 3.2 33 67-99 40-72 (83)
63 2dzn_B 26S protease regulatory 71.7 3.5 0.00012 27.8 3.3 30 70-99 40-69 (82)
64 2r44_A Uncharacterized protein 71.4 18 0.00063 29.2 8.2 51 48-98 224-297 (331)
65 2y1q_A CLPC N-domain, negative 71.0 5.8 0.0002 28.8 4.7 38 50-99 5-42 (150)
66 2krk_A 26S protease regulatory 70.0 3.9 0.00013 28.2 3.3 32 67-98 50-81 (86)
67 3fes_A ATP-dependent CLP endop 68.6 4.7 0.00016 29.7 3.7 38 50-99 7-44 (145)
68 2qby_B CDC6 homolog 3, cell di 66.7 10 0.00035 31.0 5.7 66 32-99 197-271 (384)
69 1g8p_A Magnesium-chelatase 38 66.4 13 0.00046 29.9 6.3 51 48-98 265-322 (350)
70 2chg_A Replication factor C sm 61.2 12 0.00039 27.3 4.6 63 32-96 161-224 (226)
71 1wwi_A Hypothetical protein TT 60.4 22 0.00075 27.8 6.2 59 31-91 2-60 (148)
72 3h4m_A Proteasome-activating n 55.4 18 0.00061 28.4 5.1 33 66-98 226-258 (285)
73 3fes_A ATP-dependent CLP endop 54.5 17 0.00056 26.6 4.5 39 49-99 80-118 (145)
74 1in4_A RUVB, holliday junction 54.3 35 0.0012 28.1 7.0 68 35-102 183-254 (334)
75 3zri_A CLPB protein, CLPV; cha 52.9 10 0.00035 29.4 3.2 37 50-98 24-60 (171)
76 5pal_A Parvalbumin; calcium-bi 52.7 42 0.0015 22.1 6.1 72 32-114 6-89 (109)
77 1njg_A DNA polymerase III subu 51.2 19 0.00065 26.3 4.4 63 32-95 185-248 (250)
78 3fwb_A Cell division control p 51.1 57 0.0019 22.4 8.6 39 74-112 101-139 (161)
79 1k6k_A ATP-dependent CLP prote 50.7 37 0.0013 24.1 5.9 37 49-97 78-114 (143)
80 1r4v_A Hypothetical protein AQ 50.7 23 0.00079 28.3 5.0 64 26-91 19-84 (171)
81 3fh2_A Probable ATP-dependent 49.6 45 0.0015 24.2 6.2 39 49-99 80-118 (146)
82 1uxc_A FRUR (1-57), fructose r 47.0 25 0.00084 23.0 3.9 35 31-66 11-45 (65)
83 1bh9_A TAFII18; histone fold, 46.9 46 0.0016 20.7 5.0 39 37-76 6-44 (45)
84 2f3n_A SH3 and multiple ankyri 44.6 14 0.00049 24.6 2.5 23 86-108 5-27 (76)
85 4b4t_I 26S protease regulatory 42.8 19 0.00066 32.3 3.8 67 30-97 350-422 (437)
86 1w5s_A Origin recognition comp 42.7 70 0.0024 26.1 7.0 68 32-99 215-294 (412)
87 4b4t_L 26S protease subunit RP 42.6 20 0.00068 31.9 3.8 31 67-97 391-421 (437)
88 2zbk_B Type 2 DNA topoisomeras 41.7 7.3 0.00025 35.6 0.8 57 42-98 427-485 (530)
89 3bq7_A Diacylglycerol kinase d 41.6 17 0.00057 24.6 2.5 24 85-108 9-32 (81)
90 3bos_A Putative DNA replicatio 41.4 23 0.0008 26.3 3.6 61 34-96 176-241 (242)
91 4b4t_J 26S protease regulatory 41.3 21 0.00072 31.6 3.7 32 66-97 357-388 (405)
92 3vfd_A Spastin; ATPase, microt 41.0 1.2E+02 0.004 25.4 8.2 69 33-101 283-368 (389)
93 1lv7_A FTSH; alpha/beta domain 41.0 29 0.00098 27.0 4.1 64 35-99 185-253 (257)
94 4b4t_H 26S protease regulatory 40.9 20 0.00067 32.6 3.5 32 67-98 419-450 (467)
95 1bu3_A Calcium-binding protein 40.7 75 0.0025 20.8 6.5 81 31-113 6-89 (109)
96 2y1q_A CLPC N-domain, negative 39.2 36 0.0012 24.4 4.2 37 49-97 78-114 (150)
97 4b4t_M 26S protease regulatory 39.2 21 0.00072 31.7 3.4 33 66-98 390-422 (434)
98 3b9p_A CG5977-PA, isoform A; A 39.1 65 0.0022 25.3 6.1 59 50-108 208-282 (297)
99 4b4t_K 26S protease regulatory 38.4 21 0.00073 31.6 3.3 31 67-97 383-413 (428)
100 2d8c_A Phosphatidylcholine:cer 38.1 14 0.00049 26.3 1.8 23 85-107 19-41 (97)
101 2kru_A Light-independent proto 37.6 23 0.0008 23.8 2.7 51 48-99 3-54 (63)
102 3pm8_A PFCDPK2, calcium-depend 37.4 71 0.0024 23.7 5.8 80 29-111 19-99 (197)
103 1hqc_A RUVB; extended AAA-ATPa 37.3 45 0.0016 26.4 4.9 70 32-101 168-241 (324)
104 3pxg_A Negative regulator of g 36.5 51 0.0017 28.8 5.4 38 50-99 5-42 (468)
105 2q2e_B Type 2 DNA topoisomeras 35.7 13 0.00046 34.7 1.6 67 28-97 424-492 (621)
106 3zri_A CLPB protein, CLPV; cha 35.5 44 0.0015 25.7 4.3 38 49-98 97-135 (171)
107 3d8b_A Fidgetin-like protein 1 34.5 86 0.0029 26.0 6.3 63 37-99 256-335 (357)
108 4ds7_A Calmodulin, CAM; protei 34.5 1E+02 0.0035 20.6 9.7 41 74-114 89-129 (147)
109 2gle_A Neurabin-1; SAM domain, 34.2 19 0.00065 23.6 1.8 22 86-107 7-28 (74)
110 2qz4_A Paraplegin; AAA+, SPG7, 33.9 18 0.00062 27.8 1.9 33 66-98 217-249 (262)
111 1tiz_A Calmodulin-related prot 32.6 71 0.0024 18.6 4.2 37 76-112 8-44 (67)
112 3fs7_A Parvalbumin, thymic; ca 32.4 1E+02 0.0036 20.0 7.1 72 31-113 6-89 (109)
113 3pvs_A Replication-associated 32.2 62 0.0021 28.3 5.3 67 32-99 165-245 (447)
114 1khy_A CLPB protein; alpha hel 31.8 50 0.0017 23.5 3.9 35 50-96 82-116 (148)
115 1sxj_D Activator 1 41 kDa subu 31.7 1.9E+02 0.0066 22.8 8.6 68 31-99 191-264 (353)
116 2l09_A ASR4154 protein; proto- 30.5 27 0.00093 23.4 2.1 49 49-98 3-52 (62)
117 1kw4_A Polyhomeotic; SAM domai 30.4 29 0.00099 24.1 2.3 24 85-108 16-40 (89)
118 3bow_A Calpain-2 catalytic sub 30.1 2.5E+02 0.0087 25.9 9.3 84 29-112 545-648 (714)
119 3mse_B Calcium-dependent prote 29.7 1.5E+02 0.0053 21.2 8.4 28 74-101 44-71 (180)
120 3pfi_A Holliday junction ATP-d 28.5 59 0.002 26.1 4.2 69 33-101 185-257 (338)
121 2lmt_A Calmodulin-related prot 28.3 1.4E+02 0.0046 20.8 5.7 41 73-113 87-127 (148)
122 2lv7_A Calcium-binding protein 27.2 62 0.0021 22.1 3.6 52 50-113 29-80 (100)
123 2kz2_A Calmodulin, CAM; TR2C, 27.1 94 0.0032 20.3 4.4 36 76-111 36-71 (94)
124 1ofh_A ATP-dependent HSL prote 27.0 69 0.0024 24.9 4.3 52 49-100 233-301 (310)
125 1pva_A Parvalbumin; calcium bi 26.7 86 0.0029 20.4 4.2 71 32-113 7-89 (110)
126 1ixz_A ATP-dependent metallopr 26.6 41 0.0014 26.0 2.8 58 37-95 191-253 (254)
127 1rwy_A Parvalbumin alpha; EF-h 26.6 98 0.0034 20.1 4.4 79 32-112 6-87 (109)
128 3pxi_A Negative regulator of g 26.1 90 0.0031 28.7 5.4 38 50-99 5-42 (758)
129 1jr3_A DNA polymerase III subu 26.0 52 0.0018 26.5 3.4 65 31-96 177-242 (373)
130 2ovk_C Myosin catalytic light 25.9 1.3E+02 0.0043 20.7 5.2 40 73-112 89-128 (159)
131 3h4s_E KCBP interacting Ca2+-b 25.8 75 0.0026 22.2 3.9 26 75-100 46-71 (135)
132 1wlz_A DJBP, CAP-binding prote 25.5 1.4E+02 0.0048 19.3 6.0 28 74-101 29-56 (105)
133 1mu5_A Type II DNA topoisomera 25.5 34 0.0012 30.6 2.4 36 42-77 428-463 (471)
134 3sg6_A Gcamp2, myosin light ch 25.4 2E+02 0.0069 25.5 7.4 41 74-114 390-430 (450)
135 1u5t_A Appears to BE functiona 25.4 72 0.0025 26.3 4.2 37 64-100 89-143 (233)
136 2obh_A Centrin-2; DNA repair c 25.1 1.7E+02 0.0057 20.0 6.2 81 32-112 39-122 (143)
137 2pvb_A Protein (parvalbumin); 24.6 1.5E+02 0.005 19.2 7.0 80 32-113 6-88 (108)
138 3dtp_E RLC, myosin regulatory 24.4 1.7E+02 0.0059 21.3 5.9 37 64-101 109-157 (196)
139 3f8t_A Predicted ATPase involv 24.3 2.2E+02 0.0074 26.1 7.5 66 31-96 393-481 (506)
140 3j04_B Myosin regulatory light 24.2 1.1E+02 0.0037 20.6 4.4 38 76-113 83-120 (143)
141 1iy2_A ATP-dependent metallopr 24.2 48 0.0016 26.2 2.9 59 36-95 214-277 (278)
142 3qrx_A Centrin; calcium-bindin 24.1 1.8E+02 0.0061 20.0 10.2 40 74-113 106-145 (169)
143 3ezq_B Protein FADD; apoptosis 24.1 1E+02 0.0035 22.6 4.5 36 78-114 57-92 (122)
144 1qvr_A CLPB protein; coiled co 23.9 56 0.0019 30.7 3.7 35 50-96 5-39 (854)
145 3lf9_A 4E10_D0_1IS1A_001_C (T1 23.6 1.6E+02 0.0056 22.1 5.5 65 49-113 31-105 (121)
146 3i5g_B Myosin regulatory light 23.5 2E+02 0.0068 20.5 6.0 54 46-111 5-58 (153)
147 1jr3_D DNA polymerase III, del 23.4 96 0.0033 25.1 4.6 66 31-96 141-207 (343)
148 3i5g_C Myosin catalytic light 23.0 1.4E+02 0.0049 21.5 5.1 39 73-111 89-127 (159)
149 2znd_A Programmed cell death p 22.9 1.9E+02 0.0065 20.2 5.7 74 32-111 41-116 (172)
150 3cuq_A Vacuolar-sorting protei 22.7 51 0.0018 27.2 2.8 15 84-98 113-127 (234)
151 2joj_A Centrin protein; N-term 22.7 93 0.0032 18.8 3.5 32 77-108 15-46 (77)
152 1y1x_A Leishmania major homolo 22.7 2E+02 0.0068 20.8 5.9 29 73-101 97-125 (191)
153 3ox6_A Calcium-binding protein 22.6 1.8E+02 0.006 19.4 10.2 42 73-114 92-134 (153)
154 1rro_A RAT oncomodulin; calciu 22.4 1.6E+02 0.0056 19.0 5.7 67 31-99 5-71 (108)
155 2qac_A Myosin A tail domain in 22.1 1.4E+02 0.0049 20.1 4.8 29 80-108 25-54 (146)
156 2e8o_A SAM domain and HD domai 21.9 38 0.0013 23.8 1.6 17 86-102 30-46 (103)
157 2ktg_A Calmodulin, putative; e 21.8 1E+02 0.0035 19.1 3.6 36 76-111 21-56 (85)
158 1avs_A Troponin C; muscle cont 21.7 1.4E+02 0.0047 18.8 4.3 36 76-111 27-62 (90)
159 1r6b_X CLPA protein; AAA+, N-t 21.3 63 0.0022 29.6 3.4 33 51-95 2-34 (758)
160 2kp7_A Crossover junction endo 21.1 1.8E+02 0.0062 20.0 5.1 21 99-119 65-86 (87)
161 3qrx_A Centrin; calcium-bindin 21.0 2.1E+02 0.0072 19.7 5.8 15 82-96 77-91 (169)
162 2kn2_A Calmodulin; S MAPK phos 21.0 1.5E+02 0.005 18.7 4.3 20 81-100 21-40 (92)
163 1s6j_A CDPK, calcium-dependent 20.9 97 0.0033 19.3 3.4 38 76-113 30-67 (87)
164 3omb_A Extracellular solute-bi 20.8 1E+02 0.0034 26.6 4.4 70 44-115 461-534 (535)
165 4a4j_A Pacszia, cation-transpo 20.8 43 0.0015 20.2 1.5 18 84-101 48-65 (69)
166 2ovk_B RLC, myosin regulatory 20.3 1.5E+02 0.0052 20.2 4.6 35 78-112 25-59 (153)
167 1yfs_A Alanyl-tRNA synthetase; 20.0 2E+02 0.0068 26.2 6.3 30 78-107 371-401 (465)
No 1
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.97 E-value=1.3e-31 Score=207.83 Aligned_cols=105 Identities=30% Similarity=0.511 Sum_probs=88.3
Q ss_pred ccccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchhH
Q 030647 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYID 105 (174)
Q Consensus 26 ~~~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~ 105 (174)
+++|+.||+|+|.||||+++|++.+||+||+.+|++||++||+|||++|+++|.+++||||+++||++||+.+||.+|++
T Consensus 4 ~~~d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~ 83 (128)
T 2byk_B 4 RIEDLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVP 83 (128)
T ss_dssp -------CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHH
T ss_pred ccccccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHH
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcccCCCCCCCCC
Q 030647 106 PLKIYLTRYREMEGDTKGNAKGGDA 130 (174)
Q Consensus 106 ~lk~~L~~yre~~~~kk~~~k~~~~ 130 (174)
+|+.+|+.||+....++..++.+..
T Consensus 84 ~lk~~l~~yr~~~~~kk~~~~~~~~ 108 (128)
T 2byk_B 84 SLTQDLEVYRKVVKEKKESKASKKD 108 (128)
T ss_dssp HHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccc
Confidence 9999999999999988876544443
No 2
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=9.1e-32 Score=219.26 Aligned_cols=99 Identities=33% Similarity=0.627 Sum_probs=92.3
Q ss_pred CCccccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCch
Q 030647 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDY 103 (174)
Q Consensus 24 ~~~~~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y 103 (174)
.-.++|+.||+|+|.||||++|| +++||+||+++|++||++||+|||++|+++|.+++||||+++||++||++|||++|
T Consensus 8 ~~~~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~f 86 (179)
T 1jfi_B 8 SGNDDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSY 86 (179)
T ss_dssp ----CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGG
T ss_pred CCchhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHH
Confidence 35788999999999999999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHhcccCC
Q 030647 104 IDPLKIYLTRYREMEGDTKG 123 (174)
Q Consensus 104 v~~lk~~L~~yre~~~~kk~ 123 (174)
+++|+.+|++||+....|+.
T Consensus 87 v~~lk~~L~~yre~~~~kkr 106 (179)
T 1jfi_B 87 ISEVKEVLQECKTVALKRRK 106 (179)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcc
Confidence 99999999999998877653
No 3
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.97 E-value=2.1e-30 Score=189.84 Aligned_cols=93 Identities=72% Similarity=1.209 Sum_probs=85.9
Q ss_pred CCccccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCch
Q 030647 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDY 103 (174)
Q Consensus 24 ~~~~~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y 103 (174)
.++++|+.||+|+|.||||+.+|++.+||+||+++|++|+++||.||+++|++.|.+++||||+++||++||++|||.+|
T Consensus 1 ~~~~~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~~l~F~~~ 80 (93)
T 1n1j_A 1 SFREQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSY 80 (93)
T ss_dssp ------CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTTCGGG
T ss_pred CCCcccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHhh
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHH
Q 030647 104 IDPLKIYLTRYRE 116 (174)
Q Consensus 104 v~~lk~~L~~yre 116 (174)
+++++.+|++||+
T Consensus 81 i~~~~~~l~~~r~ 93 (93)
T 1n1j_A 81 VEPLKLYLQKFRE 93 (93)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC
Confidence 9999999999984
No 4
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.88 E-value=5e-23 Score=146.00 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=64.8
Q ss_pred cccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 29 D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
...||+|+|.||||+++| +.+||+||+++|++|+++||++|+++|++.|.+++||||+++||++|++.+
T Consensus 2 ~~~LP~A~V~rI~K~~~p-~~~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~l 70 (76)
T 3b0c_W 2 RRTVPRGTLRKIIKKHKP-HLRLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKVI 70 (76)
T ss_dssp --CCCHHHHHHHHHHHCT-TCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred CCcccccHHHHHHHHhCC-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 368999999999999999 689999999999999999999999999999999999999999999999764
No 5
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.85 E-value=1.6e-21 Score=155.63 Aligned_cols=75 Identities=24% Similarity=0.354 Sum_probs=72.0
Q ss_pred ccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchhH
Q 030647 30 RYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYID 105 (174)
Q Consensus 30 ~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~ 105 (174)
..||+++|.||||+.||. .+||+||+++|++|+++|+.+|+++|++.|+++|||||+++||+|||..|||++|++
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v~d 77 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGVED 77 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTSTT
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccCCc
Confidence 379999999999999987 899999999999999999999999999999999999999999999999999999865
No 6
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.80 E-value=1.1e-19 Score=125.41 Aligned_cols=66 Identities=33% Similarity=0.448 Sum_probs=63.8
Q ss_pred cCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 31 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
.||+++|.||||+. ++.+||+||+.+|++|+++||.+|+.+|++.|.+++||||+++||.+|++.|
T Consensus 2 ~lP~a~v~Ri~k~~--~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~l 67 (68)
T 1b67_A 2 ELPIAPIGRIIKNA--GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKMF 67 (68)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGGG
T ss_pred CCCccHHHHHHhcC--CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 69999999999999 5789999999999999999999999999999999999999999999999876
No 7
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.79 E-value=2.4e-19 Score=135.87 Aligned_cols=91 Identities=21% Similarity=0.310 Sum_probs=80.3
Q ss_pred cccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchhHH
Q 030647 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDP 106 (174)
Q Consensus 27 ~~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~ 106 (174)
.+|+.||+++|.||+|.. ...+||+|+.++|.+|+.+|+..|+.+|...|++++||||+++||++||+..||..|..+
T Consensus 3 ~~d~~lP~a~I~Ri~r~~--g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 3 TREPEIASSLIKQIFSHY--VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp -------CHHHHHHHHHH--HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCCHHHHHHHHHHC--CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 367899999999999999 468999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHH--HHHhc
Q 030647 107 LKIYLTRY--REMEG 119 (174)
Q Consensus 107 lk~~L~~y--re~~~ 119 (174)
+..++++| +|...
T Consensus 81 l~~l~~~~lp~E~~~ 95 (111)
T 3b0c_T 81 LHVLVERHLPLEYRK 95 (111)
T ss_dssp HHHHHHHHSCHHHHH
T ss_pred HHHHHHHhCcHHHHH
Confidence 99999999 66544
No 8
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.73 E-value=7.2e-19 Score=138.18 Aligned_cols=97 Identities=20% Similarity=0.336 Sum_probs=62.7
Q ss_pred cccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHh-HhcCCCCcCcchHHHHHHH---cCCCc
Q 030647 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKC-QREKRKTINGDDLLWAMAT---LGFED 102 (174)
Q Consensus 27 ~~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~-~~~kRKTI~~eDVl~AL~~---LgF~~ 102 (174)
..++.||+|.|.||||.. |+..+||++|..+|++|++.||.+|+..|+..| +..+||||+++||.+|+.. ++|..
T Consensus 15 ~~~~~LPlaRIKrIMK~d-pdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 15 TAETFLPLSRVRTIMKSS-MDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp --------------CCSS-SSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred ccCCCCCHHHHHHHHhcC-cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 457899999999999998 888899999999999999999999999999999 9999999999999999984 56666
Q ss_pred hhHHHHHHHHHHHHHhcccCCC
Q 030647 103 YIDPLKIYLTRYREMEGDTKGN 124 (174)
Q Consensus 103 yv~~lk~~L~~yre~~~~kk~~ 124 (174)
++-|.+.++..|++..+.++..
T Consensus 94 divP~ki~l~~~~~~~~~~~~~ 115 (140)
T 2byk_A 94 QIVPQKIRVHQFQEMLRLNRSA 115 (140)
T ss_dssp TTSCSCC---------------
T ss_pred ccccchhhHHHHHHHHHhcccc
Confidence 6669999999999888765543
No 9
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.72 E-value=1.4e-17 Score=132.74 Aligned_cols=73 Identities=19% Similarity=0.272 Sum_probs=68.7
Q ss_pred CCCccccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 23 SNVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 23 ~~~~~~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
+.++.+|+.||+++|.||||+. ...|||+||+++|++|+++|+.+|+++|++.|++++||||+++||++||+.
T Consensus 74 ~v~d~~~l~lP~a~V~Ri~k~~--g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 74 GVEDYDGELFGRATVRRILKRA--GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp TSTTCCSCCCCHHHHHHHHHHT--TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred cCCccccccCCccHHHHHHHHc--CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 3466788999999999999999 468999999999999999999999999999999999999999999999985
No 10
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=99.67 E-value=9.1e-17 Score=122.72 Aligned_cols=77 Identities=25% Similarity=0.342 Sum_probs=69.9
Q ss_pred cccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchh
Q 030647 27 EQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYI 104 (174)
Q Consensus 27 ~~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv 104 (174)
..+..||+|.|.||||.. |+..+||+||..+|++|+++||.+|+.+|++.|+..+||||+++||..|++..+.-+|+
T Consensus 37 ~k~~~lPvaRIkrImK~d-~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~~dFL 113 (119)
T 4g92_C 37 YKIHQLPLARIKKVMKAD-PEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKRRTLQRSDIAAALSKSDMFDFL 113 (119)
T ss_dssp SSCCSSCHHHHHHHHHTS-TTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGG
T ss_pred cccCCCCHHHHHHHHhhC-CccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCccCHHHHHHHHhcCchhhHH
Confidence 345679999999999976 88899999999999999999999999999999999999999999999999876654554
No 11
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.66 E-value=1.2e-16 Score=117.92 Aligned_cols=80 Identities=24% Similarity=0.286 Sum_probs=69.9
Q ss_pred ccccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchhH
Q 030647 26 REQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYID 105 (174)
Q Consensus 26 ~~~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~ 105 (174)
...+..||+|.|.||||.. |+..+||+||..+|++|++.||.+|+.+|++.|++.+||||+++||.+|++..++.+|+.
T Consensus 14 ~~~~~~lP~arIkrImK~~-~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~Av~~~e~~~FL~ 92 (97)
T 1n1j_B 14 DFRVQELPLARIKKIMKLD-EDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQFDFLI 92 (97)
T ss_dssp ------CCHHHHHHHHTTS-TTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGGGGGGT
T ss_pred CcCCCcCCHHHHHHHHccC-ccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHhcCcHHHHHH
Confidence 3456789999999999998 667899999999999999999999999999999999999999999999999988888765
Q ss_pred H
Q 030647 106 P 106 (174)
Q Consensus 106 ~ 106 (174)
.
T Consensus 93 d 93 (97)
T 1n1j_B 93 D 93 (97)
T ss_dssp T
T ss_pred h
Confidence 3
No 12
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.65 E-value=2.9e-16 Score=117.26 Aligned_cols=78 Identities=19% Similarity=0.297 Sum_probs=71.3
Q ss_pred CCccccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCch
Q 030647 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDY 103 (174)
Q Consensus 24 ~~~~~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y 103 (174)
.+++....||+++|.||++.... .+||+|+.++|++|+++|+..|+.+|.+.|++++||||+++||.+||+.++|.-|
T Consensus 21 ~~r~~i~~ip~~~I~Rlar~~Gv--~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~g~~lY 98 (102)
T 1id3_B 21 ILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTLY 98 (102)
T ss_dssp ---CCGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCCEE
T ss_pred HHHhccCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 56777888999999999999864 6899999999999999999999999999999999999999999999999998766
No 13
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.64 E-value=2.2e-16 Score=113.87 Aligned_cols=77 Identities=19% Similarity=0.295 Sum_probs=71.8
Q ss_pred CccccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCch
Q 030647 25 VREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDY 103 (174)
Q Consensus 25 ~~~~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y 103 (174)
+++....||+++|.||++.... .+||+|+.++|++|+++|+..|+.+|...|++++||||+++||.+||+.+||.-|
T Consensus 4 ~r~~~~~ip~~~I~Riar~~Gv--~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~g~~lY 80 (84)
T 2hue_C 4 LRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 80 (84)
T ss_dssp GGGGCCSSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTTCEEEE
T ss_pred ccccCCCCCHHHHHHHHHHcCc--hhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCC
Confidence 4667778999999999999864 6899999999999999999999999999999999999999999999999998765
No 14
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.60 E-value=2e-15 Score=104.96 Aligned_cols=64 Identities=27% Similarity=0.459 Sum_probs=61.4
Q ss_pred cCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHH
Q 030647 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (174)
Q Consensus 31 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~ 96 (174)
.||+++|.||+|+. ...+||+++..+|++|+++|+..|+.+|+..|++.|||||+++||..|++
T Consensus 6 ~lp~a~v~Rl~r~~--g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~ 69 (70)
T 1ku5_A 6 ELPIAPVDRLIRKA--GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIK 69 (70)
T ss_dssp CSCHHHHHHHHHHT--TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHT
T ss_pred cCChHHHHHHHHHc--CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 79999999999997 46799999999999999999999999999999999999999999999986
No 15
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.59 E-value=3.2e-15 Score=111.38 Aligned_cols=78 Identities=19% Similarity=0.282 Sum_probs=72.8
Q ss_pred CCccccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCch
Q 030647 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDY 103 (174)
Q Consensus 24 ~~~~~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y 103 (174)
..++.+..||+++|.||++.... .+||.|+.+.|.+|+++|+..|+.+|...|++.+||||+++||.+||+.++|.-|
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g~~lY 99 (103)
T 1tzy_D 22 VLRDNIQGITKPAIRRLARRGGV--KRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQGRTLY 99 (103)
T ss_dssp CCCCGGGGSCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTCEEE
T ss_pred chhhhcccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcCCCCc
Confidence 46777788999999999999965 5899999999999999999999999999999999999999999999999998755
No 16
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.57 E-value=4.4e-15 Score=110.71 Aligned_cols=78 Identities=21% Similarity=0.305 Sum_probs=64.3
Q ss_pred CCccccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCch
Q 030647 24 NVREQDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDY 103 (174)
Q Consensus 24 ~~~~~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y 103 (174)
..++....||+++|.||++.... .+||.|+.+.|.+|+++|+..|+.+|...|++.+||||+++||.+||+.++|..|
T Consensus 22 ~~r~~~~gip~~~I~Rlar~~G~--~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g~~lY 99 (103)
T 2yfw_B 22 ILRDNIQGITKPAIRRLARRGGV--KRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQGRTLY 99 (103)
T ss_dssp --------CCHHHHHHHHHHTTC--CEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC----
T ss_pred hhhhhhccCCHHHHHHHHHHcCc--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcCCCCc
Confidence 34667778999999999999865 5899999999999999999999999999999999999999999999999998655
No 17
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.35 E-value=7.3e-13 Score=97.87 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=59.8
Q ss_pred cccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHH
Q 030647 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL 107 (174)
Q Consensus 29 D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~l 107 (174)
...||.+.|.||||.. |+..+||.||..++.++++.|+.+|+..|...|+..+||||+++||..|++.-+..+|+..+
T Consensus 9 ~~~fPvaRIkrimK~~-~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~di 86 (98)
T 1jfi_A 9 NARFPPARIKKIMQTD-EEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKAR 86 (98)
T ss_dssp -CCCCHHHHHHHHTTS-TTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----------
T ss_pred CCCCChHHHHHHHHcC-ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhc
Confidence 4789999999999974 55679999999999999999999999999999999999999999999999876665555433
No 18
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=99.16 E-value=1.2e-10 Score=83.33 Aligned_cols=71 Identities=15% Similarity=0.172 Sum_probs=64.9
Q ss_pred cccCchhHHHHHHHhhCC---CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 29 DRYLPIANISRIMKKALP---ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 29 D~~LP~A~V~RImK~~LP---~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
++.||++.+.||+|+... .+.+++.+|..+||++++.|+.-|...||..|.+.||+||.++||.-|...-|
T Consensus 1 ~lli~k~PF~RLVRei~~~~~~~~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~rirg 74 (77)
T 2hue_B 1 MALIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRIRG 74 (77)
T ss_dssp -CCSCHHHHHHHHHHHHHTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred CCccccchHHHHHHHHHHHcCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHHhC
Confidence 578999999999999943 46899999999999999999999999999999999999999999999987654
No 19
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=99.04 E-value=3.6e-10 Score=84.31 Aligned_cols=71 Identities=18% Similarity=0.157 Sum_probs=60.6
Q ss_pred ccccccCchhHHHHHHHhhCCC------CCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHH
Q 030647 26 REQDRYLPIANISRIMKKALPA------NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (174)
Q Consensus 26 ~~~D~~LP~A~V~RImK~~LP~------~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~ 96 (174)
+..++.||++.+.||+++...+ +.+++.+|..+||++++.|+.-|...||..|.+.||+||.+.||--|..
T Consensus 22 kst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~r 98 (100)
T 2yfv_A 22 RSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDMQLARR 98 (100)
T ss_dssp ------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred ccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHHHH
Confidence 4578999999999999999843 6899999999999999999999999999999999999999999998863
No 20
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=99.04 E-value=4.5e-10 Score=81.14 Aligned_cols=70 Identities=17% Similarity=0.121 Sum_probs=64.2
Q ss_pred ccCchhHHHHHHHhhCC-----CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 30 RYLPIANISRIMKKALP-----ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 30 ~~LP~A~V~RImK~~LP-----~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
+.||++.+.||+|+... .+.+++.+|..+||++++.|+.-|...||..|.+.||+||.++||.-|..--|
T Consensus 2 lLI~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~rirg 76 (82)
T 3nqj_A 2 LLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRG 76 (82)
T ss_dssp CSSCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCcccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHHHcc
Confidence 57999999999999983 26799999999999999999999999999999999999999999999986544
No 21
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.96 E-value=8e-10 Score=86.89 Aligned_cols=75 Identities=16% Similarity=0.136 Sum_probs=66.3
Q ss_pred ccccccCchhHHHHHHHhhCC-----CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCC
Q 030647 26 REQDRYLPIANISRIMKKALP-----ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGF 100 (174)
Q Consensus 26 ~~~D~~LP~A~V~RImK~~LP-----~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF 100 (174)
+..++.||++.+.||++++.. .+.+++.+|+++||++++.|+.-|...||..|.+.||+||.++||.-|..--|.
T Consensus 56 kst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiqLArrirg~ 135 (140)
T 3nqu_A 56 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIRGL 135 (140)
T ss_dssp ---CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC-
T ss_pred cccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHhccc
Confidence 467899999999999999973 268999999999999999999999999999999999999999999999876554
No 22
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.96 E-value=1.1e-09 Score=85.61 Aligned_cols=74 Identities=15% Similarity=0.184 Sum_probs=67.8
Q ss_pred ccccccCchhHHHHHHHhhCC---CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 26 REQDRYLPIANISRIMKKALP---ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 26 ~~~D~~LP~A~V~RImK~~LP---~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
+..++.||++.+.||++++.. .+.+++.+|+.+||++++.|+.-|...||..|.+.+|+||.++||.-|...-|
T Consensus 57 kst~lLIpk~PF~RLVREI~~~~~~~~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiqLa~rirg 133 (136)
T 1tzy_C 57 KSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRG 133 (136)
T ss_dssp HCCSCCSCHHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHT
T ss_pred cchhhhhccchHHHHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHHHHHHHhC
Confidence 467899999999999999943 46899999999999999999999999999999999999999999999987544
No 23
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.95 E-value=7.8e-10 Score=88.26 Aligned_cols=73 Identities=15% Similarity=0.099 Sum_probs=65.0
Q ss_pred ccccccCchhHHHHHHHhhCCC-----CCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 26 REQDRYLPIANISRIMKKALPA-----NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 26 ~~~D~~LP~A~V~RImK~~LP~-----~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
+..+++||++.+.|||+++..+ +.+++.+|+++||++++.|+.-|...||..|.+.||+||.++||..|+.--
T Consensus 72 kSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIqLArrIr 149 (156)
T 3r45_A 72 KSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARRIR 149 (156)
T ss_dssp ---CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHH
T ss_pred cccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHHHHHHHc
Confidence 4678999999999999999842 579999999999999999999999999999999999999999999987643
No 24
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.78 E-value=2.3e-08 Score=70.14 Aligned_cols=65 Identities=18% Similarity=0.223 Sum_probs=61.1
Q ss_pred ccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHH
Q 030647 30 RYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (174)
Q Consensus 30 ~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~ 96 (174)
-.||+++|.+|+++..- .++|+|+..+|.+-++..+..|+.+|...+++.||||++.+||-.||+
T Consensus 5 s~lp~~~v~~iaes~Gi--~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 5 SSISAESMKVIAESIGV--GSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp CCCCHHHHHHHHHHTTC--CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHCCC--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 47999999999999953 489999999999999999999999999999999999999999999985
No 25
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.78 E-value=1.4e-08 Score=77.23 Aligned_cols=77 Identities=16% Similarity=0.146 Sum_probs=66.4
Q ss_pred HHHHHHHhhCCC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHHHH
Q 030647 36 NISRIMKKALPA-NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRY 114 (174)
Q Consensus 36 ~V~RImK~~LP~-~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~~y 114 (174)
+|.||+++...+ ++.||++++.+|.+.+..|+.-|+.++...|++.|||||+++||..++++- +.|..+|..|
T Consensus 32 ~V~rIvke~gaer~~~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~------~~L~~~l~~~ 105 (113)
T 4dra_A 32 TVGCLCEEVALDKEMQFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRS------NSLLKYITDK 105 (113)
T ss_dssp HHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 589999999754 577999999999999999999999999999999999999999999999863 4566666666
Q ss_pred HHHh
Q 030647 115 REME 118 (174)
Q Consensus 115 re~~ 118 (174)
.+..
T Consensus 106 ~~el 109 (113)
T 4dra_A 106 SEEI 109 (113)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5433
No 26
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=98.77 E-value=1.2e-08 Score=80.15 Aligned_cols=75 Identities=13% Similarity=0.151 Sum_probs=63.6
Q ss_pred HHHHHHHhhCCC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHHHH
Q 030647 36 NISRIMKKALPA-NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRY 114 (174)
Q Consensus 36 ~V~RImK~~LP~-~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~~y 114 (174)
+|.||+++.... ++.||++++.+|.+.+..|+..|+.++...|++.|||||+++||..++++. +.|..+|..|
T Consensus 24 ~VgkIvee~~~~~~~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn------~~L~~~L~~~ 97 (140)
T 3vh5_A 24 TTGALAQDVAEDKGVLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRS------NSLLKYITQK 97 (140)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTS------HHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhC------HHHHHHHHHH
Confidence 588999988653 688999999999999999999999999999999999999999999999873 3444444444
Q ss_pred HH
Q 030647 115 RE 116 (174)
Q Consensus 115 re 116 (174)
.+
T Consensus 98 ~~ 99 (140)
T 3vh5_A 98 SD 99 (140)
T ss_dssp HH
T ss_pred HH
Confidence 44
No 27
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=98.71 E-value=3.1e-08 Score=72.53 Aligned_cols=62 Identities=13% Similarity=0.153 Sum_probs=58.6
Q ss_pred HHHHHHHhhCCCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 36 NISRIMKKALPAN-GKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 36 ~V~RImK~~LP~~-~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
+|.+|+.+.++.+ +.||++++.+|.+.+..|+.-|+..+...|++.|||||+++||.-++++
T Consensus 17 ~V~ki~~e~~~~~g~~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rr 79 (90)
T 3v9r_A 17 RVEERLQQVLSSEDIKYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRK 79 (90)
T ss_dssp HHHHHHHHHSCSSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcCceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 5889999999865 8899999999999999999999999999999999999999999999875
No 28
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.64 E-value=5.7e-08 Score=73.18 Aligned_cols=63 Identities=11% Similarity=0.076 Sum_probs=57.9
Q ss_pred HHHHHHHhhCC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 36 NISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 36 ~V~RImK~~LP-~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
+|.||+++... .+.++|++++.+|.+.+..|+.-|+.+|...|++.|||||+.+||.-|++..
T Consensus 24 ~V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn 87 (107)
T 3b0b_B 24 TTGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRS 87 (107)
T ss_dssp HHHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTC
T ss_pred HHHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhC
Confidence 48999998864 2468999999999999999999999999999999999999999999999873
No 29
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=98.46 E-value=4.7e-07 Score=69.44 Aligned_cols=69 Identities=16% Similarity=0.229 Sum_probs=63.5
Q ss_pred ccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 28 ~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
..+.||.+.|.|+||+.--. .+|+.+|...|..+.+.|+..|...|...|+..+|++|+++||..|+..
T Consensus 20 agL~fPV~ri~R~Lk~~~~a-~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 88 (123)
T 2nqb_C 20 AGLQFPVGRIHRLLRKGNYA-ERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRN 88 (123)
T ss_dssp HTCSSCHHHHHHHHHHTTSC-SEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeeccHHHHHHHHHccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhc
Confidence 36899999999999998433 4999999999999999999999999999999999999999999999873
No 30
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=98.46 E-value=4.6e-07 Score=70.00 Aligned_cols=70 Identities=17% Similarity=0.207 Sum_probs=64.4
Q ss_pred ccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 28 ~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
-.+.||.+.|.|+||+......||+.+|...|..+.+.|...|...|...|++.+|++|+++||..|+..
T Consensus 24 agLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~n 93 (128)
T 1f66_C 24 AGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRG 93 (128)
T ss_dssp HTCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred CCccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 3689999999999999864345999999999999999999999999999999999999999999999874
No 31
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=98.44 E-value=5.8e-07 Score=69.49 Aligned_cols=69 Identities=16% Similarity=0.231 Sum_probs=63.5
Q ss_pred ccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 28 ~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
..+.||.+.|.|+||+.--. .+|+.+|...|..+.+.|+..|...|...|+..+|++|+++||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~a-~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~n 90 (129)
T 1tzy_A 22 AGLQFPVGRVHRLLRKGNYA-ERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (129)
T ss_dssp HTCSSCHHHHHHHHHHTTSS-SEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CceeccHHHHHHHHHccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhc
Confidence 36899999999999997433 4999999999999999999999999999999999999999999999873
No 32
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=98.42 E-value=7.1e-07 Score=68.19 Aligned_cols=69 Identities=19% Similarity=0.270 Sum_probs=63.6
Q ss_pred ccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 28 ~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
..+.||.+.|.|+||+.-- ..+|+.+|...|..+.+.|...|...|...|+..+|++|+++||..|+..
T Consensus 19 agLqfPV~ri~R~Lk~~~~-a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~n 87 (120)
T 2f8n_G 19 AGVIFPVGRMLRYIKKGHP-KYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVAN 87 (120)
T ss_dssp HTCSSCHHHHHHHHHHHSS-SCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred cCccCChHHHHHHHHcCcc-ccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 3689999999999999854 35999999999999999999999999999999999999999999999873
No 33
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=98.41 E-value=5.9e-07 Score=69.63 Aligned_cols=69 Identities=16% Similarity=0.233 Sum_probs=63.5
Q ss_pred ccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 28 ~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
..+.||.+.|.|+||+.--. .||+.+|...|..+.+.|+..|...|...|+..+|++|+++||..|+..
T Consensus 22 agLqfPV~rI~R~Lk~~~~a-~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~n 90 (131)
T 1id3_C 22 AGLTFPVGRVHRLLRRGNYA-QRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRN 90 (131)
T ss_dssp GTCSSCHHHHHHHHHTTCSC-SEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHT
T ss_pred CCeecCHHHHHHHHHccccc-cccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhc
Confidence 46899999999999997433 4999999999999999999999999999999999999999999999873
No 34
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.38 E-value=1.6e-06 Score=60.45 Aligned_cols=61 Identities=20% Similarity=0.214 Sum_probs=56.4
Q ss_pred hHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 35 ANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 35 A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
..|.||+|+..- -+++.++...|.+.+..++.-|..+|...|++.+||||+.+||..|++.
T Consensus 5 ~~i~~iLk~~G~--~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKELNV--QEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHTTC--CCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHCCC--cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 368999999853 4899999999999999999999999999999999999999999999874
No 35
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=98.38 E-value=9.2e-07 Score=70.03 Aligned_cols=69 Identities=14% Similarity=0.224 Sum_probs=63.5
Q ss_pred ccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 28 ~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
..+.||.+.|.|+||+.--. .||+.+|...|..+.+.|+..|...|...|+..+|++|+++||..|+..
T Consensus 41 agLqFPVgrI~R~LK~~~~a-~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~n 109 (149)
T 2f8n_K 41 AGLQFPVGRVHRLLRKGNYS-ERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRN 109 (149)
T ss_dssp HTCSSCHHHHHHHHHHTTSC-SEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCeeccHHHHHHHHHccccc-cccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhc
Confidence 36899999999999998443 4999999999999999999999999999999999999999999999873
No 36
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=98.37 E-value=6e-07 Score=68.95 Aligned_cols=53 Identities=21% Similarity=0.320 Sum_probs=39.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCc
Q 030647 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFED 102 (174)
Q Consensus 50 rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~ 102 (174)
|||.|+.+.+.+..++|+.-|..+|...|++.+||||+++||.-||+..|-.-
T Consensus 64 RIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~~l 116 (121)
T 2ly8_A 64 RISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGRTL 116 (121)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTCGG
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCCcC
Confidence 44555555555555555555666888999999999999999999999887643
No 37
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=98.29 E-value=1.8e-06 Score=66.47 Aligned_cols=67 Identities=24% Similarity=0.289 Sum_probs=60.4
Q ss_pred hHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCc
Q 030647 35 ANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFED 102 (174)
Q Consensus 35 A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~ 102 (174)
.-|+|++|++-| +..||.+|...|+..+..+..-|+.||..+|...+|+||+..||..|++-|==++
T Consensus 37 ~YIyKVLKQVhp-d~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 103 (123)
T 2nqb_D 37 IYIYTVLKQVHP-DTGISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVRLLLPGE 103 (123)
T ss_dssp HHHHHHHHHHCT-TCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHHHhCcHH
Confidence 568999999988 4789999999999999999999999999999999999999999999997543333
No 38
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=98.25 E-value=2.4e-06 Score=66.07 Aligned_cols=67 Identities=22% Similarity=0.278 Sum_probs=60.4
Q ss_pred hHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCc
Q 030647 35 ANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFED 102 (174)
Q Consensus 35 A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~ 102 (174)
.-|+|++|++-|+ ..||.+|...|+..+..+..-|+.||..++...+|+||+..||..|++-|==++
T Consensus 40 ~YIyKVLKQVhpd-~gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvrLlLpGE 106 (126)
T 1tzy_B 40 IYVYKVLKQVHPD-TGISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVRLLLPGE 106 (126)
T ss_dssp HHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHhCCC-CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCcHH
Confidence 3699999999884 789999999999999999999999999999999999999999999997543333
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=98.21 E-value=3.3e-06 Score=68.72 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=63.4
Q ss_pred cccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 29 D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
.+.||.+.|.|+||+.-....+|+.+|...|..+.+.|+..|...|...|++.+|++|+++||..|+..
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~n 171 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRG 171 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHT
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhc
Confidence 589999999999999843235999999999999999999999999999999999999999999999873
No 40
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.14 E-value=3.3e-06 Score=71.22 Aligned_cols=71 Identities=17% Similarity=0.148 Sum_probs=63.9
Q ss_pred cccCchhHHHHHHHhhCCC------CCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 29 DRYLPIANISRIMKKALPA------NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 29 D~~LP~A~V~RImK~~LP~------~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
.+.+|+.+..||+++...+ +.+++.+|..|||++++.|+--|...+|-.|.+.||.||.+.|+.-|..--|
T Consensus 9 ~~lI~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 9 KLLISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp --CCSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred cccccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 4789999999999998753 5799999999999999999999999999999999999999999999987554
No 41
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=98.09 E-value=1.7e-05 Score=57.43 Aligned_cols=70 Identities=17% Similarity=0.199 Sum_probs=62.7
Q ss_pred cccCchhHHHHHHHhhCC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 29 DRYLPIANISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 29 D~~LP~A~V~RImK~~LP-~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
+..+|..+|.||++...- ++.||++||..++.+....||.--...|.+.++.++..+|..+|+-+.+-.|
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~pQL 80 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLPQL 80 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence 567999999999998886 5789999999999999999999999999999998888899999998876544
No 42
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=98.04 E-value=3.2e-06 Score=71.29 Aligned_cols=59 Identities=20% Similarity=0.270 Sum_probs=52.7
Q ss_pred HHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 39 RIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 39 RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
||++... .-|||.++.+.+.+..++|+.-|..+|...|++.+||||+++||..||+.+|
T Consensus 169 RlaRrgG--VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~g 227 (235)
T 2l5a_A 169 EDGDKGG--VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 227 (235)
T ss_dssp TTSCCTT--CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHH
T ss_pred HHhhcCC--chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhcC
Confidence 5555443 3589999999999999999999999999999999999999999999999764
No 43
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.97 E-value=2.1e-05 Score=64.00 Aligned_cols=68 Identities=19% Similarity=0.298 Sum_probs=60.5
Q ss_pred hHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCch
Q 030647 35 ANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDY 103 (174)
Q Consensus 35 A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~y 103 (174)
.-|.|++|++-| +..||+||...|...+..++.-|+.+|...+...+|+||+..||..|++-+=-.+.
T Consensus 7 ~yi~kvLkqv~p-~~~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeL 74 (192)
T 2jss_A 7 SYIYKVLKQTHP-DTGISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVRLILPGEL 74 (192)
T ss_dssp HHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHH
T ss_pred HHHHHHHcccCC-CCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHH
Confidence 458999999988 47899999999999999999999999999999999999999999999974333333
No 44
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.88 E-value=6e-05 Score=54.03 Aligned_cols=72 Identities=14% Similarity=0.232 Sum_probs=62.6
Q ss_pred cccccCchhHHHHHHHhhCC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 27 EQDRYLPIANISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 27 ~~D~~LP~A~V~RImK~~LP-~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
+.+..+|...|.||++.... +..||++||..++.+....||.--...|...++.++-..|..+|+-+.+-.|
T Consensus 4 ~~~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~pqL 76 (81)
T 3b0b_C 4 EREGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLPQL 76 (81)
T ss_dssp ---CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred ccCCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHHHH
Confidence 45678999999999999987 4689999999999999999999999999999988888999999998876543
No 45
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=97.81 E-value=0.0001 Score=52.32 Aligned_cols=67 Identities=16% Similarity=0.327 Sum_probs=62.5
Q ss_pred ccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 30 RYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 30 ~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
..|++..+..++++.=| +..+..|+.++|.+.|.+||.-++..|-..|++-+-.||...||.-.|++
T Consensus 4 ~vl~k~~L~~Lv~~idp-~~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler 70 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDP-NEQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLER 70 (76)
T ss_dssp CSSCHHHHHHHHHHHCS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHh
Confidence 35799999999999977 68999999999999999999999999999999999999999999998874
No 46
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.47 E-value=0.00055 Score=49.71 Aligned_cols=67 Identities=16% Similarity=0.260 Sum_probs=60.9
Q ss_pred cCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcC-CCCcCcchHHHHHHHcC
Q 030647 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREK-RKTINGDDLLWAMATLG 99 (174)
Q Consensus 31 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~k-RKTI~~eDVl~AL~~Lg 99 (174)
.||++.|.|||...+ +..++.+...+|.-.+.+||--|..+|.+++.+.+ +.-|.+.||-.|...|.
T Consensus 16 ~f~k~~vKrl~~~~~--~~~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl~ 83 (89)
T 1bh9_B 16 AFPKAAIKRLIQSIT--GTSVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRLK 83 (89)
T ss_dssp CCCHHHHHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHc--CCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHH
Confidence 599999999999998 46899999999999999999999999999998875 45899999999988764
No 47
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.14 E-value=0.0017 Score=49.69 Aligned_cols=89 Identities=11% Similarity=0.122 Sum_probs=63.5
Q ss_pred cCchhHHHHHHHhhCC---C---CCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCC---CCcCcchHHHHHHHcCCC
Q 030647 31 YLPIANISRIMKKALP---A---NGKIAKDAKETVQECVSEFISFITSEASDKCQREKR---KTINGDDLLWAMATLGFE 101 (174)
Q Consensus 31 ~LP~A~V~RImK~~LP---~---~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kR---KTI~~eDVl~AL~~LgF~ 101 (174)
.+|+....|++++... . +.+++.+|..+||++++.|+--|...+|-.|.+..| |.|+.+ +...+.. -+.
T Consensus 1 LI~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~-iy~e~r~-vl~ 78 (121)
T 2ly8_A 1 LISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGL-IYEEVRA-VLK 78 (121)
T ss_dssp CCSCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSC-HHHHHHH-HHH
T ss_pred CCCccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHH-HHHHHHH-HHH
Confidence 4688888888887542 2 689999999999999999999999999988877743 677764 5554432 134
Q ss_pred chhHHHHHHHHHHHHHhccc
Q 030647 102 DYIDPLKIYLTRYREMEGDT 121 (174)
Q Consensus 102 ~yv~~lk~~L~~yre~~~~k 121 (174)
+|.+.+-...-.|-+-.+.|
T Consensus 79 ~~l~~i~rdav~yaehA~RK 98 (121)
T 2ly8_A 79 SFLESVIRDSVTYTEHAKRK 98 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHhcCCC
Confidence 56666555555665544433
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=96.75 E-value=0.0024 Score=46.44 Aligned_cols=48 Identities=17% Similarity=0.205 Sum_probs=40.1
Q ss_pred CchhHHHHHHHhhCC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 030647 32 LPIANISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEASDKCQ 79 (174)
Q Consensus 32 LP~A~V~RImK~~LP-~~~rISkDA~~al~~~ateFI~~LtseA~e~~~ 79 (174)
||+.+|.||++.... ++.||++||..++++....||.--...|.+..+
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke 50 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHK 50 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 799999999997775 468999999999999999999876666654443
No 49
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=91.19 E-value=0.41 Score=39.58 Aligned_cols=66 Identities=14% Similarity=0.207 Sum_probs=49.9
Q ss_pred CchhHHHHHHHhhCC-CCCccchHHHHHHHHHHH----HHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 32 LPIANISRIMKKALP-ANGKIAKDAKETVQECVS----EFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 32 LP~A~V~RImK~~LP-~~~rISkDA~~al~~~at----eFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
++...+..|++..+. .+..++.++.+.|.+.+. -.+.-+...|...|...++++|+.+||..|++.
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 456667777776554 246799999999988776 244445556777888889999999999999985
No 50
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=85.62 E-value=2.4 Score=41.57 Aligned_cols=66 Identities=18% Similarity=0.197 Sum_probs=51.5
Q ss_pred cccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHH
Q 030647 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (174)
Q Consensus 29 D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~ 96 (174)
.+.+|...|.|++|.... -||+..|-.-+.-..+-...-|.--|-..|+..+++.|++.||..|+.
T Consensus 102 ~l~~pv~~~~~~l~~~~~--~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~~~~~ai~ 167 (1049)
T 3ksy_A 102 PLSLPVEKIHPLLKEVLG--YKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQDIKVAMC 167 (1049)
T ss_dssp SCSSCHHHHHHHHHHHHC--SCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHHHHHHHHH
T ss_pred CccccHHHHHHHhhcccc--cccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCcccccccc
Confidence 478999999999977764 499988877776555544445555566777888899999999999986
No 51
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=85.33 E-value=3.5 Score=33.69 Aligned_cols=76 Identities=17% Similarity=0.154 Sum_probs=53.9
Q ss_pred CchhHHHHHHHhhCCC---CCccchHHHHHHHHHH------------HHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHH
Q 030647 32 LPIANISRIMKKALPA---NGKIAKDAKETVQECV------------SEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (174)
Q Consensus 32 LP~A~V~RImK~~LP~---~~rISkDA~~al~~~a------------teFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~ 96 (174)
|....+..+++..+.. ...++.++...+.+.+ --++..+...|...|..+++.+|+.+||..|++
T Consensus 193 l~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~ 272 (389)
T 1fnn_A 193 YTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSK 272 (389)
T ss_dssp CBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Confidence 3446677777665532 2479999998888877 233455556777788888889999999999999
Q ss_pred HcCCCchhHHH
Q 030647 97 TLGFEDYIDPL 107 (174)
Q Consensus 97 ~LgF~~yv~~l 107 (174)
.+....+...+
T Consensus 273 ~~~~~~~~~~l 283 (389)
T 1fnn_A 273 EVLFGISEEVL 283 (389)
T ss_dssp HHSCCCCHHHH
T ss_pred HHhhhhHHHHH
Confidence 87665444433
No 52
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.23 E-value=1.6 Score=38.14 Aligned_cols=66 Identities=11% Similarity=0.086 Sum_probs=49.5
Q ss_pred CchhHHHHHHHhhCC-CCCccchHHHHHHHHHH-H---HHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 32 LPIANISRIMKKALP-ANGKIAKDAKETVQECV-S---EFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 32 LP~A~V~RImK~~LP-~~~rISkDA~~al~~~a-t---eFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
+....+..+++..+. .+..++.++...|.+.+ . -....|...|...|..+++.+|+.+||..|+.-
T Consensus 366 ~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 366 YTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 455667777776543 24579999988888876 2 244555667888899999999999999999865
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=84.21 E-value=1.5 Score=35.81 Aligned_cols=67 Identities=10% Similarity=0.124 Sum_probs=50.7
Q ss_pred hhHHHHHHHhhCC---CCCccchHHHHHHHHHHH------HHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCC
Q 030647 34 IANISRIMKKALP---ANGKIAKDAKETVQECVS------EFISFITSEASDKCQREKRKTINGDDLLWAMATLGF 100 (174)
Q Consensus 34 ~A~V~RImK~~LP---~~~rISkDA~~al~~~at------eFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF 100 (174)
...+..|++..+. .+..++.++...+.+.+. -.+.-+...|...|..+++.+|+.+||..|++.+..
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 5667777766543 245799999998888776 345556667778888888999999999999987743
No 54
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=79.76 E-value=1.6 Score=29.10 Aligned_cols=43 Identities=21% Similarity=0.271 Sum_probs=32.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 56 KETVQECVSEF----ISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 56 ~~al~~~ateF----I~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
...|.+.+.-| |.-|..+|...|.++++..|+.+|+..||+++
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~v 73 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 73 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 34444444434 67778888889999999999999999999863
No 55
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=78.02 E-value=6.6 Score=31.73 Aligned_cols=74 Identities=9% Similarity=0.107 Sum_probs=52.1
Q ss_pred CchhHHHHHHHhhCC---CCCccchHHHHHHHHHHH------HHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCc
Q 030647 32 LPIANISRIMKKALP---ANGKIAKDAKETVQECVS------EFISFITSEASDKCQREKRKTINGDDLLWAMATLGFED 102 (174)
Q Consensus 32 LP~A~V~RImK~~LP---~~~rISkDA~~al~~~at------eFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~ 102 (174)
|....+..|++..+. ....++.++...+.+.+. ..+.-+...|...+..+++.+|+.+||..|++.+....
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~~~ 276 (386)
T 2qby_A 197 YNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDR 276 (386)
T ss_dssp CCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhhch
Confidence 445667777766432 135789999888887765 23444666777888888899999999999998775444
Q ss_pred hhH
Q 030647 103 YID 105 (174)
Q Consensus 103 yv~ 105 (174)
+..
T Consensus 277 ~~~ 279 (386)
T 2qby_A 277 VRD 279 (386)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 56
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=77.37 E-value=4.9 Score=29.02 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=27.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHH
Q 030647 51 IAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAM 95 (174)
Q Consensus 51 ISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL 95 (174)
+|++++.+|+. |.+.|.+.+...|.++|++.||
T Consensus 2 ~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaL 34 (143)
T 1k6k_A 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (143)
T ss_dssp BCHHHHHHHHH------------HHHHHHHHTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCcCHHHHHHHH
Confidence 46666666664 7788888899999999999998
No 57
>2i7a_A Calpain 13; calcium-dependent cytoplasmic cysteine proteinases, like, EF-hand, structural genomics, structural genomics CON SGC, hydrolase; 1.80A {Homo sapiens}
Probab=76.98 E-value=21 Score=26.76 Aligned_cols=28 Identities=21% Similarity=0.187 Sum_probs=23.2
Q ss_pred HHHHHhHhcCCCCcCcchHHHHHHHc----CCC
Q 030647 73 EASDKCQREKRKTINGDDLLWAMATL----GFE 101 (174)
Q Consensus 73 eA~e~~~~~kRKTI~~eDVl~AL~~L----gF~ 101 (174)
+|....- ++.-+|+.+++..+|..+ |+.
T Consensus 80 ~aF~~fD-d~~G~I~~~El~~~l~~l~~~~G~~ 111 (174)
T 2i7a_A 80 HVFQKVQ-TSPGVLLSSDLWKAIENTDFLRGIF 111 (174)
T ss_dssp HHHHHHC-SBTTBEEGGGHHHHHHTCGGGTTCC
T ss_pred HHHHHhc-CCCCcCCHHHHHHHHHHhHhccCCC
Confidence 4566667 777799999999999999 875
No 58
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=74.38 E-value=16 Score=33.08 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=39.0
Q ss_pred CccchHHHHHHHHHHH-------------HHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 49 GKIAKDAKETVQECVS-------------EFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 49 ~rISkDA~~al~~~at-------------eFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
..++.+|...|.+.+. --+.-|...|...|..+++.+|+.+||.+|++.
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 4699999999888553 233445557888999999999999999999964
No 59
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=74.27 E-value=7.5 Score=28.10 Aligned_cols=38 Identities=11% Similarity=0.120 Sum_probs=31.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 50 rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
+++..++.+|+. |.+.|.+.+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHlLlaLl~~~ 42 (148)
T 1khy_A 5 RLTNKFQLALAD------------AQSLALGHDNQFIEPLHLMSALLNQE 42 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHTCT
T ss_pred hhhHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHcCC
Confidence 678888888875 77899999999999999999985433
No 60
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=72.63 E-value=4.2 Score=29.92 Aligned_cols=37 Identities=11% Similarity=0.227 Sum_probs=31.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 50 rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
++|..++.+|+. |.+.|+..+...|.++||+.||=+-
T Consensus 6 ~~t~~~~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~ 42 (146)
T 3fh2_A 6 RFTDRARRVIVL------------AQEEARMLNHNYIGTEHILLGLIHE 42 (146)
T ss_dssp GBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred hcCHHHHHHHHH------------HHHHHHHcCCCCchHHHHHHHHHhC
Confidence 678888888875 7788999999999999999998653
No 61
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=72.17 E-value=3.5 Score=28.32 Aligned_cols=34 Identities=24% Similarity=0.225 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCC
Q 030647 67 ISFITSEASDKCQREKRKTINGDDLLWAMATLGF 100 (174)
Q Consensus 67 I~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF 100 (174)
|.-|..+|...|.+.++..|+.+|+..|++++-.
T Consensus 40 l~~l~~eAa~~a~r~~~~~i~~~df~~Al~~v~~ 73 (88)
T 3vlf_B 40 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKVIS 73 (88)
T ss_dssp HHHHHHHHHHHHHHHSCSSBCHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHhc
Confidence 5666777888888889999999999999997644
No 62
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=72.03 E-value=3.3 Score=27.76 Aligned_cols=33 Identities=27% Similarity=0.194 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 67 ISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 67 I~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
|..|..+|...|.+..+..|+.+|+..|+++.-
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~~ 72 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTVI 72 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHc
Confidence 445667788888888899999999999998753
No 63
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=71.70 E-value=3.5 Score=27.79 Aligned_cols=30 Identities=37% Similarity=0.239 Sum_probs=24.1
Q ss_pred HHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 70 ITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 70 LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
|..+|...|.++++..|+.+|+..|+++.-
T Consensus 40 l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 40 IMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 444666777788889999999999998763
No 64
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=71.42 E-value=18 Score=29.25 Aligned_cols=51 Identities=12% Similarity=0.027 Sum_probs=35.8
Q ss_pred CCccchHHHHHHHHHHHHH-----------------------HHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 48 NGKIAKDAKETVQECVSEF-----------------------ISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 48 ~~rISkDA~~al~~~ateF-----------------------I~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
++.|+.++.+.+.+.+... ...|...|...|.-.+|..|+.+||..|+...
T Consensus 224 ~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 224 KVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp TCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 4568888888877655322 12334455667777899999999999998743
No 65
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=70.99 E-value=5.8 Score=28.84 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=31.7
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 50 rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
+++..++.+|+. |.+.|.+.+...|.++|++.||=+-+
T Consensus 5 ~~t~~~~~al~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (150)
T 2y1q_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (150)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 678888888875 77899999999999999999985443
No 66
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=69.99 E-value=3.9 Score=28.24 Aligned_cols=32 Identities=25% Similarity=0.340 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 67 ISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 67 I~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
|.-|..+|...|.++.+..|+.+|+..|+++.
T Consensus 50 L~~l~~eAa~~alr~~~~~I~~~df~~Al~~v 81 (86)
T 2krk_A 50 VKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 81 (86)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 34456677778888888999999999999864
No 67
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=68.59 E-value=4.7 Score=29.69 Aligned_cols=38 Identities=11% Similarity=0.235 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 50 rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
+++..++.+|+. |.+.|.+.+...|.++||+.||=+-+
T Consensus 7 ~~T~~a~~~l~~------------A~~~A~~~~~~~i~~eHLLlaLl~~~ 44 (145)
T 3fes_A 7 RFTQRAKKAIDL------------AFESAKSLGHNIVGSEHILLGLLREE 44 (145)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHHhCC
Confidence 688888888875 77889999999999999999986543
No 68
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=66.71 E-value=10 Score=30.97 Aligned_cols=66 Identities=9% Similarity=0.030 Sum_probs=45.7
Q ss_pred CchhHHHHHHHhhCC---CCCccchHHHHHHHHHHH---H---HHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 32 LPIANISRIMKKALP---ANGKIAKDAKETVQECVS---E---FISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 32 LP~A~V~RImK~~LP---~~~rISkDA~~al~~~at---e---FI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
|....+..|++..+. ....++.++...+.+.+. = .+.-+...|...|. ++.+|+.+||..|++++.
T Consensus 197 l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 197 YDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 456677777777542 135799999888888775 1 23334445566665 667999999999998774
No 69
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=66.40 E-value=13 Score=29.90 Aligned_cols=51 Identities=10% Similarity=-0.069 Sum_probs=39.3
Q ss_pred CCccchHHHHHHHHHHHH-------HHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 48 NGKIAKDAKETVQECVSE-------FISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 48 ~~rISkDA~~al~~~ate-------FI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
...|++++...|.+.+.. -+..+...|...|..++|.+|+.+||..|+..+
T Consensus 265 ~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 265 KVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMA 322 (350)
T ss_dssp GCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 358999999999877653 334455566777888899999999999998754
No 70
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=61.20 E-value=12 Score=27.32 Aligned_cols=63 Identities=11% Similarity=0.096 Sum_probs=40.5
Q ss_pred CchhHHHHHHHhhCCC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHH
Q 030647 32 LPIANISRIMKKALPA-NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (174)
Q Consensus 32 LP~A~V~RImK~~LP~-~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~ 96 (174)
++...+.++++..+.. +..++.++...|.+.+.--+..+-......+... ++|+.+||..++.
T Consensus 161 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG--EVVDADTIYQITA 224 (226)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC--SCBCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC--ceecHHHHHHHhc
Confidence 4556666777665531 3568898888887766544444444444444333 6899999999875
No 71
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=60.38 E-value=22 Score=27.77 Aligned_cols=59 Identities=17% Similarity=0.242 Sum_probs=51.7
Q ss_pred cCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchH
Q 030647 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91 (174)
Q Consensus 31 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDV 91 (174)
.+|.+.+.|+.+.+.. .-|.|+-..-+.+.++.=+.-|.--|.+.|+.++|.+|...|+
T Consensus 2 vm~~~~~e~lFR~aa~--LdvdK~d~~r~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAG--LDVDKNDLKRVSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHHHC--CCCCGGGHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 3678889999999974 6677888888888999988889999999999999999999886
No 72
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=55.36 E-value=18 Score=28.45 Aligned_cols=33 Identities=27% Similarity=0.271 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 66 FISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 66 FI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
-|.-|..+|...|...++.+|+.+||..|++++
T Consensus 226 ~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 226 ELKAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 456677788888989999999999999998754
No 73
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=54.47 E-value=17 Score=26.63 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=31.6
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 49 GKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 49 ~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
..+|.++..+|.+ |...|++.+...|+.+||+.||-.-+
T Consensus 80 ~~~s~~~~~vl~~------------A~~~A~~~~~~~v~~eHlLlAll~~~ 118 (145)
T 3fes_A 80 IVLSPRSKQILEL------------SGMFANKLKTNYIGTEHILLAIIQEG 118 (145)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhCC
Confidence 4578888777775 67788888999999999999996544
No 74
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=54.28 E-value=35 Score=28.09 Aligned_cols=68 Identities=24% Similarity=0.280 Sum_probs=45.2
Q ss_pred hHHHHHHHhhCC-CCCccchHHHHHHHHHHH---HHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCc
Q 030647 35 ANISRIMKKALP-ANGKIAKDAKETVQECVS---EFISFITSEASDKCQREKRKTINGDDLLWAMATLGFED 102 (174)
Q Consensus 35 A~V~RImK~~LP-~~~rISkDA~~al~~~at---eFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~ 102 (174)
..+..|++.... -+..++.|+...|.+.+. -.+.-+...+.+.|...++..|+.++|..|++.++++.
T Consensus 183 ~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~~~~~ 254 (334)
T 1in4_A 183 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVLNIDD 254 (334)
T ss_dssp HHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHhCCCc
Confidence 355566654331 145688888887766432 23334445566677777788999999999999987654
No 75
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=52.95 E-value=10 Score=29.35 Aligned_cols=37 Identities=14% Similarity=0.245 Sum_probs=30.6
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 50 rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
+++..++.+|+. |.+.|.+.+...|.++||+.||=+-
T Consensus 24 kfT~~a~~aL~~------------A~~~A~~~~h~~I~~EHLLlaLL~~ 60 (171)
T 3zri_A 24 KLNAQSKLALEQ------------AASLCIERQHPEVTLEHYLDVLLDN 60 (171)
T ss_dssp HBCHHHHHHHHH------------HHHHHHHHTCSEECHHHHHHHHTTC
T ss_pred HcCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHHc
Confidence 577778888775 6788999999999999999998543
No 76
>5pal_A Parvalbumin; calcium-binding protein; 1.54A {Triakis semifasciata} SCOP: a.39.1.4
Probab=52.67 E-value=42 Score=22.05 Aligned_cols=72 Identities=14% Similarity=0.179 Sum_probs=46.7
Q ss_pred CchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHH---------HHHHHHhHhcCCCCcCcchHHHHHHHc---C
Q 030647 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFIT---------SEASDKCQREKRKTINGDDLLWAMATL---G 99 (174)
Q Consensus 32 LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~Lt---------seA~e~~~~~kRKTI~~eDVl~AL~~L---g 99 (174)
+....|.+|++..=. +..|+-+ +|+.++. ..+....-.++.-.|+.+++..+|..+ |
T Consensus 6 ~s~~ei~~~~~~~d~-~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~g 74 (109)
T 5pal_A 6 LKADDINKAISAFKD-PGTFDYK----------RFFHLVGLKGKTDAQVKEVFEILDKDQSGFIEEEELKGVLKGFSAHG 74 (109)
T ss_dssp SCHHHHHHHHHHTCS-TTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHCTTCSSEECHHHHHTHHHHHCTTC
T ss_pred CCHHHHHHHHHHhCC-CCcCcHH----------HHHHHHhhccCcHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHHHHcC
Confidence 566778888887644 5566643 2333221 234456666777899999999999998 6
Q ss_pred CCchhHHHHHHHHHH
Q 030647 100 FEDYIDPLKIYLTRY 114 (174)
Q Consensus 100 F~~yv~~lk~~L~~y 114 (174)
..--.+.++..+..+
T Consensus 75 ~~~~~~~~~~~~~~~ 89 (109)
T 5pal_A 75 RDLNDTETKALLAAG 89 (109)
T ss_dssp CCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHh
Confidence 655555555554443
No 77
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=51.25 E-value=19 Score=26.30 Aligned_cols=63 Identities=8% Similarity=0.027 Sum_probs=41.1
Q ss_pred CchhHHHHHHHhhCC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHH
Q 030647 32 LPIANISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAM 95 (174)
Q Consensus 32 LP~A~V~RImK~~LP-~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL 95 (174)
|....+..+++..+. .+..++.++...|.+.+.=-..++-......+. ..+++|+.+||.+++
T Consensus 185 l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~-~~~~~i~~~~v~~~~ 248 (250)
T 1njg_A 185 LDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAML 248 (250)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHT-TTTSSBCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHh-ccCceecHHHHHHHh
Confidence 445667777766553 245789998888887776555555544443333 345689999998875
No 78
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=51.09 E-value=57 Score=22.40 Aligned_cols=39 Identities=15% Similarity=0.088 Sum_probs=26.4
Q ss_pred HHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHH
Q 030647 74 ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (174)
Q Consensus 74 A~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~ 112 (174)
+....-.++.-.|+.+++..+|..+|..--.+.++..+.
T Consensus 101 ~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 139 (161)
T 3fwb_A 101 AFQLFDDDHTGKISIKNLRRVAKELGETLTDEELRAMIE 139 (161)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHHHHcCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 334444566678999999999999987544444444433
No 79
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=50.74 E-value=37 Score=24.15 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=29.1
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 49 GKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 49 ~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
..+|..++.+|++ |...++.-+...|+.+||+.||-.
T Consensus 78 ~~~s~~~~~~l~~------------A~~~A~~~~~~~i~~ehLLlall~ 114 (143)
T 1k6k_A 78 TQPTLSFQRVLQR------------AVFHVQSSGRNEVTGANVLVAIFS 114 (143)
T ss_dssp CEECHHHHHHHHH------------HHHHHHSSSCSCBCHHHHHHHHTT
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCccCHHHHHHHHHh
Confidence 3567777766664 677888888899999999999954
No 80
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=50.71 E-value=23 Score=28.27 Aligned_cols=64 Identities=13% Similarity=0.130 Sum_probs=54.9
Q ss_pred ccccc--cCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchH
Q 030647 26 REQDR--YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDL 91 (174)
Q Consensus 26 ~~~D~--~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDV 91 (174)
.++.. .+|.+.+.||.+.+.. .-|.|+-..-+.+.++.=+.-|.--|.+.|+.++|-+|...|+
T Consensus 19 ~~~~Mm~vmg~~kferlFR~aag--LDvdK~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 19 KIETMLRPKGFDKLDHYFRTELD--IDLTDETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp --CCTTSCTTHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred HHHHHHhcCChHHHHHHHHHHhc--cCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 34445 7899999999999974 6788988888999999988888889999999999999999886
No 81
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=49.63 E-value=45 Score=24.19 Aligned_cols=39 Identities=18% Similarity=0.127 Sum_probs=31.4
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 49 GKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 49 ~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
..+|.++..+|.+ |...|++.+...|+.+||+.||-+-+
T Consensus 80 ~~~s~~~~~vL~~------------A~~~a~~~~~~~i~~eHlLlall~~~ 118 (146)
T 3fh2_A 80 IPFTPRAKKVLEL------------SLREGLQMGHKYIGTEFLLLGLIREG 118 (146)
T ss_dssp CCBCHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCcCcHHHHHHHHHhCC
Confidence 4688888888876 66778888999999999999986443
No 82
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=47.00 E-value=25 Score=22.98 Aligned_cols=35 Identities=14% Similarity=0.155 Sum_probs=26.1
Q ss_pred cCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHH
Q 030647 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEF 66 (174)
Q Consensus 31 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateF 66 (174)
-+..++|.|++...- ....||.|.+.-|.+++.++
T Consensus 11 GVS~sTVSrvLng~~-~~~~vs~et~~rI~~aa~~l 45 (65)
T 1uxc_A 11 GVSRTTASYVINGKA-KQYRVSDKTVEKVMAVVREH 45 (65)
T ss_dssp TSCHHHHHHHHHTCT-TTTTCTTHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHcCCC-CCCCCCHHHHHHHHHHHHHh
Confidence 467899999998642 11369999999888887665
No 83
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=46.86 E-value=46 Score=20.65 Aligned_cols=39 Identities=18% Similarity=0.211 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Q 030647 37 ISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASD 76 (174)
Q Consensus 37 V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e 76 (174)
|..+|-.-. +...-..|+..+|-+.+.+||..++.+|.+
T Consensus 6 i~~mMy~fG-D~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 6 LRCMMYGFG-DDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHTT-SCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 455555443 445678899999999999999999998864
No 84
>2f3n_A SH3 and multiple ankyrin repeat domains 3; postsynaptic density, SAM domain, shank, scaffolding protein, structural protein; 2.10A {Rattus norvegicus} SCOP: a.60.1.2 PDB: 2f44_A
Probab=44.65 E-value=14 Score=24.63 Aligned_cols=23 Identities=9% Similarity=-0.015 Sum_probs=19.3
Q ss_pred cCcchHHHHHHHcCCCchhHHHH
Q 030647 86 INGDDLLWAMATLGFEDYIDPLK 108 (174)
Q Consensus 86 I~~eDVl~AL~~LgF~~yv~~lk 108 (174)
=+++||..-|+.+||++|++...
T Consensus 5 Ws~~~V~~WL~~lgl~~Y~~~F~ 27 (76)
T 2f3n_A 5 WSKFDVGDWLESIHLGEHRDRFE 27 (76)
T ss_dssp CCHHHHHHHHHHTTCGGGHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHH
Confidence 36889999999999999887654
No 85
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.84 E-value=19 Score=32.34 Aligned_cols=67 Identities=19% Similarity=0.157 Sum_probs=42.5
Q ss_pred ccCchh-HHHHHHHhhCCCCCccchHH-HHHHHHHHH----HHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 30 RYLPIA-NISRIMKKALPANGKIAKDA-KETVQECVS----EFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 30 ~~LP~A-~V~RImK~~LP~~~rISkDA-~~al~~~at----eFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
+.+|-. .-..|++-.+. +..++.|. .+.|.+.+. -=|.-|..+|...|.+++|..|+.+|+..|+++
T Consensus 350 v~lPd~~~R~~Il~~~l~-~~~l~~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 350 FENPDLSTKKKILGIHTS-KMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp CCCCCHHHHHHHHHHHHT-TSCBCSCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHhc-CCCCCCcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 345532 23345554443 34455442 344444332 236677788888999999999999999999874
No 86
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=42.70 E-value=70 Score=26.05 Aligned_cols=68 Identities=9% Similarity=0.038 Sum_probs=48.4
Q ss_pred CchhHHHHHHHhhCC---CCCccchHHHHHHHHHHH---------HHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 32 LPIANISRIMKKALP---ANGKIAKDAKETVQECVS---------EFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 32 LP~A~V~RImK~~LP---~~~rISkDA~~al~~~at---------eFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
|....+..|++..+. ....++.++...+.+.+. -++..+...|...+...++.+|+.+||..++..+.
T Consensus 215 l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 294 (412)
T 1w5s_A 215 YKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENE 294 (412)
T ss_dssp CCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 445667777754331 123588888888887776 25666777777888888888999999999987764
No 87
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.61 E-value=20 Score=31.94 Aligned_cols=31 Identities=35% Similarity=0.368 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 67 ISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 67 I~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
|..|..+|.-.|.++++..|+.+|+..|+++
T Consensus 391 i~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 391 IRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5667778888888999999999999999975
No 88
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae}
Probab=41.67 E-value=7.3 Score=35.62 Aligned_cols=57 Identities=14% Similarity=0.254 Sum_probs=42.0
Q ss_pred HhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcC--cchHHHHHHHc
Q 030647 42 KKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN--GDDLLWAMATL 98 (174)
Q Consensus 42 K~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~--~eDVl~AL~~L 98 (174)
|+++.+.--|-+|.+.||++||...=.||+......-.+++++++. -.+|.++|..+
T Consensus 427 Ke~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (530)
T 2zbk_B 427 KESIAEVENIEKEIKNALMEVARKLKQYLSEKRKEQEAKKKLLAYLKYIPEVSRSLATF 485 (530)
T ss_dssp CSCBCCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444434468899999999999999999998766666666565554 46788888764
No 89
>3bq7_A Diacylglycerol kinase delta; SAM domain, polymerization domain, alternative splicing, cytoplasm, membrane, metal-binding, phorbol-ester binding; 2.90A {Homo sapiens}
Probab=41.61 E-value=17 Score=24.57 Aligned_cols=24 Identities=13% Similarity=0.189 Sum_probs=20.2
Q ss_pred CcCcchHHHHHHHcCCCchhHHHH
Q 030647 85 TINGDDLLWAMATLGFEDYIDPLK 108 (174)
Q Consensus 85 TI~~eDVl~AL~~LgF~~yv~~lk 108 (174)
.=+++||..-|+.+||++|++...
T Consensus 9 ~Ws~~~V~~WL~~lgl~~Y~~~F~ 32 (81)
T 3bq7_A 9 LWGTEEVAAWLEHLSLCEYKDIFT 32 (81)
T ss_dssp GCCHHHHHHHHHHTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCCCHHHHHHHH
Confidence 457899999999999999987654
No 90
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=41.42 E-value=23 Score=26.32 Aligned_cols=61 Identities=2% Similarity=0.001 Sum_probs=36.9
Q ss_pred hhHHHHHHHhhCC-CCCccchHHHHHHHHHHH----HHHHHHHHHHHHHhHhcCCCCcCcchHHHHHH
Q 030647 34 IANISRIMKKALP-ANGKIAKDAKETVQECVS----EFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (174)
Q Consensus 34 ~A~V~RImK~~LP-~~~rISkDA~~al~~~at----eFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~ 96 (174)
...+.++++..+. .+..++.++.+.|.+.+. +.+..|. .+...+..++ ++|+.+||..+|+
T Consensus 176 ~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~-~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 176 DDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLD-RLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp GGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHH-HHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHH-HHHHHHHHhC-CCCcHHHHHHHhh
Confidence 3445555555442 245789998888877653 3333333 3334444444 4699999998875
No 91
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=41.27 E-value=21 Score=31.62 Aligned_cols=32 Identities=22% Similarity=0.254 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 66 FISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 66 FI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
=|.-|..+|...|.+++|..|+.+|+..|+++
T Consensus 357 Di~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 357 DVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 46677788888999999999999999999975
No 92
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=41.02 E-value=1.2e+02 Score=25.35 Aligned_cols=69 Identities=10% Similarity=0.076 Sum_probs=45.3
Q ss_pred chhHHHHHHHhhCCC-CCccchHHHHHHHHHHHH----HHHHHHHHHHHHhHhc------------CCCCcCcchHHHHH
Q 030647 33 PIANISRIMKKALPA-NGKIAKDAKETVQECVSE----FISFITSEASDKCQRE------------KRKTINGDDLLWAM 95 (174)
Q Consensus 33 P~A~V~RImK~~LP~-~~rISkDA~~al~~~ate----FI~~LtseA~e~~~~~------------kRKTI~~eDVl~AL 95 (174)
+......|++..+.. +..++.+....|.+.+.- -|..|...|...+.++ ....|+.+|+..|+
T Consensus 283 ~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al 362 (389)
T 3vfd_A 283 NEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESL 362 (389)
T ss_dssp CHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHH
Confidence 445555666665542 356888887777766543 4555666666555554 45689999999999
Q ss_pred HHcCCC
Q 030647 96 ATLGFE 101 (174)
Q Consensus 96 ~~LgF~ 101 (174)
+...-.
T Consensus 363 ~~~~~s 368 (389)
T 3vfd_A 363 KKIKRS 368 (389)
T ss_dssp HHCCCS
T ss_pred HHcCCC
Confidence 976543
No 93
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=40.98 E-value=29 Score=26.98 Aligned_cols=64 Identities=13% Similarity=0.108 Sum_probs=39.1
Q ss_pred hHHHHHHHhhCCCCCccchHH-HHHHHHHHH----HHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 35 ANISRIMKKALPANGKIAKDA-KETVQECVS----EFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 35 A~V~RImK~~LP~~~rISkDA-~~al~~~at----eFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
.....|++..+. ...++.++ ...+.+... --|..+..+|...|...++++|+.+||..|++++-
T Consensus 185 ~~r~~il~~~~~-~~~l~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 185 RGREQILKVHMR-RVPLAPDIDAAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh-cCCCCccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 344556665553 23454443 233333211 13445556777788888899999999999998653
No 94
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.94 E-value=20 Score=32.55 Aligned_cols=32 Identities=25% Similarity=0.315 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 67 ISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 67 I~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
|.-|..+|...|.+++|+.|+.+|+..|+++.
T Consensus 419 I~~l~~eAa~~Air~~~~~it~~Df~~Al~kV 450 (467)
T 4b4t_H 419 LRSVCTEAGMFAIRARRKVATEKDFLKAVDKV 450 (467)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 56677888888989999999999999999753
No 95
>1bu3_A Calcium-binding protein; 1.65A {Merluccius bilinearis} SCOP: a.39.1.4
Probab=40.71 E-value=75 Score=20.78 Aligned_cols=81 Identities=15% Similarity=0.031 Sum_probs=44.8
Q ss_pred cCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc---CCCchhHHH
Q 030647 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL---GFEDYIDPL 107 (174)
Q Consensus 31 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L---gF~~yv~~l 107 (174)
.+....|.+|++..= .+..|+-+--..+......-.. -...+....-.++.-+|+.+++..+|..+ |..--.+.+
T Consensus 6 ~~~~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~ 83 (109)
T 1bu3_A 6 ILADADVAAALKACE-AADSFNYKAFFAKVGLTAKSAD-DIKKAFFVIDQDKSGFIEEDELKLFLQVFSAGARALTDAET 83 (109)
T ss_dssp SSCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSCHH-HHHHHHHHHCTTCSSSEEHHHHHTHHHHHSTTCCCCCHHHH
T ss_pred cCCHHHHHHHHHHhC-CCCcCcHHHHHHHHHcChhhHH-HHHHHHHHHCCCCCCcCcHHHHHHHHHHHcccCCCCCHHHH
Confidence 456677888888764 4556665321111100000000 01234455566677789999999999999 554334445
Q ss_pred HHHHHH
Q 030647 108 KIYLTR 113 (174)
Q Consensus 108 k~~L~~ 113 (174)
+..+..
T Consensus 84 ~~~~~~ 89 (109)
T 1bu3_A 84 KAFLKA 89 (109)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 96
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=39.22 E-value=36 Score=24.43 Aligned_cols=37 Identities=11% Similarity=0.209 Sum_probs=28.0
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 49 GKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 49 ~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
..+|..+..+|+. |...++.-+...|+.+|++.||=.
T Consensus 78 ~~~s~~~~~vL~~------------A~~~A~~~~~~~i~~ehlLlall~ 114 (150)
T 2y1q_A 78 IHYTPRAKKVIEL------------SMDEARKLGHSYVGTEHILLGLIR 114 (150)
T ss_dssp CEECHHHHHHHHH------------HHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHHh
Confidence 3566666666654 667777778899999999999854
No 97
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.20 E-value=21 Score=31.72 Aligned_cols=33 Identities=15% Similarity=0.260 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 66 FISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 66 FI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
-|..|..+|.-.|.+++++.|+.+|+..|+++.
T Consensus 390 Di~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 390 QLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 366777788888889999999999999999754
No 98
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=39.06 E-value=65 Score=25.32 Aligned_cols=59 Identities=12% Similarity=0.117 Sum_probs=37.3
Q ss_pred ccchHHHHHHHHHHHH----HHHHHHHHHHHHhHhcC------------CCCcCcchHHHHHHHcCCCchhHHHH
Q 030647 50 KIAKDAKETVQECVSE----FISFITSEASDKCQREK------------RKTINGDDLLWAMATLGFEDYIDPLK 108 (174)
Q Consensus 50 rISkDA~~al~~~ate----FI~~LtseA~e~~~~~k------------RKTI~~eDVl~AL~~LgF~~yv~~lk 108 (174)
.++.++...|.+.+.- -|..|..+|...+.++. ...|+.+|+..|++.+.-.-..+.++
T Consensus 208 ~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~ 282 (297)
T 3b9p_A 208 PLDTEALRRLAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLN 282 (297)
T ss_dssp CSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHH
T ss_pred CCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHH
Confidence 4777777777665443 33445555555555443 35899999999998876554444444
No 99
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=38.42 E-value=21 Score=31.58 Aligned_cols=31 Identities=39% Similarity=0.313 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHhHhcCCCCcCcchHHHHHHH
Q 030647 67 ISFITSEASDKCQREKRKTINGDDLLWAMAT 97 (174)
Q Consensus 67 I~~LtseA~e~~~~~kRKTI~~eDVl~AL~~ 97 (174)
|.-|..+|.-.|.+++|..|+.+|+..|+..
T Consensus 383 i~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 383 IAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 6777788888999999999999999999864
No 100
>2d8c_A Phosphatidylcholine:ceramide cholinephosphotransferase 1; cell-free protein synthesis, protein regulation, lipid metabolism, structural genomics; NMR {Mus musculus} SCOP: a.60.1.2
Probab=38.14 E-value=14 Score=26.32 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.0
Q ss_pred CcCcchHHHHHHHcCCCchhHHH
Q 030647 85 TINGDDLLWAMATLGFEDYIDPL 107 (174)
Q Consensus 85 TI~~eDVl~AL~~LgF~~yv~~l 107 (174)
.-+.+||..-|+.+||++|++..
T Consensus 19 ~Ws~edV~~WL~~~Gl~~Y~~~F 41 (97)
T 2d8c_A 19 YWSPKKVADWLLENAMPEYCEPL 41 (97)
T ss_dssp SCCTTHHHHHHHHTTCTTTTTTT
T ss_pred hCCHHHHHHHHHHcCCHHHHHHH
Confidence 45899999999999999998765
No 101
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=37.61 E-value=23 Score=23.78 Aligned_cols=51 Identities=12% Similarity=0.110 Sum_probs=36.4
Q ss_pred CCccchHHHHHHHHHHHHHHHHHHH-HHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 48 NGKIAKDAKETVQECVSEFISFITS-EASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 48 ~~rISkDA~~al~~~ateFI~~Lts-eA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
++..+.||...|.+.= -|+.=-.. ..-..|+..+...||.+.+..|=+.++
T Consensus 3 ~l~Wt~EAe~~LkkIP-~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~~ 54 (63)
T 2kru_A 3 ELSWTAEAEKMLGKVP-FFVRKKVRKNTDNYAREIGEPVVTADVFRKAKEHLG 54 (63)
T ss_dssp CCEECHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHhh
Confidence 4568888888888743 44443333 334678888999999999998876654
No 102
>3pm8_A PFCDPK2, calcium-dependent protein kinase 2; malaria, structural genomics, structural genomics CONS SGC; 2.00A {Plasmodium falciparum K1}
Probab=37.40 E-value=71 Score=23.69 Aligned_cols=80 Identities=10% Similarity=0.156 Sum_probs=40.2
Q ss_pred cccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHH-HHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHH
Q 030647 29 DRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEF-ISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPL 107 (174)
Q Consensus 29 D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateF-I~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~l 107 (174)
+..|....+.|+-+=. ...++.+.+...|....+.- +..| .++....-.++.-+|+.+++..+|..+|+.--...+
T Consensus 19 ~~~l~~~~~~~l~~f~--~~~~lk~~~l~~i~~~l~~~e~~~l-~~~F~~~D~d~~G~Is~~El~~~l~~~g~~~~~~~~ 95 (197)
T 3pm8_A 19 HVELSSTLLKNLKNFK--KENELKKIALTIIAKHLCDVEINNL-RNIFIALDVDNSGTLSSQEILDGLKKIGYQKIPPDI 95 (197)
T ss_dssp SCCCCTTHHHHHHHTT--TSCHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCTTCSSEECHHHHHHHHHHHC----CHHH
T ss_pred CCCCCHHHHHHHHHHH--HccHHHHHHHHHHHHHCCHHHHHHH-HHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHH
Confidence 3445566666654432 22345554444443322111 1111 123344445667799999999999999885333344
Q ss_pred HHHH
Q 030647 108 KIYL 111 (174)
Q Consensus 108 k~~L 111 (174)
...+
T Consensus 96 ~~l~ 99 (197)
T 3pm8_A 96 HQVL 99 (197)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4333
No 103
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=37.30 E-value=45 Score=26.43 Aligned_cols=70 Identities=14% Similarity=0.155 Sum_probs=45.3
Q ss_pred CchhHHHHHHHhhCCC-CCccchHHHHHHHHHHHH---HHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCC
Q 030647 32 LPIANISRIMKKALPA-NGKIAKDAKETVQECVSE---FISFITSEASDKCQREKRKTINGDDLLWAMATLGFE 101 (174)
Q Consensus 32 LP~A~V~RImK~~LP~-~~rISkDA~~al~~~ate---FI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~ 101 (174)
++...+..+++..+.. +..++.++...|.+.+.- .+..+...+...|...+...|+.+|+..+++.+..+
T Consensus 168 ~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 241 (324)
T 1hqc_A 168 YTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERALEALAALGLD 241 (324)
T ss_dssp CCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccc
Confidence 4556667777665532 457999998888876522 222233333444555567789999999999877653
No 104
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=36.51 E-value=51 Score=28.76 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=32.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 50 rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
+++..++.+|.. |.+.|.+.+...|..+|+|.||=.-+
T Consensus 5 ~ft~~a~~al~~------------A~~~A~~~~h~~v~~eHLLlaLl~~~ 42 (468)
T 3pxg_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (468)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 678888888875 77889999999999999999997654
No 105
>2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei}
Probab=35.72 E-value=13 Score=34.69 Aligned_cols=67 Identities=19% Similarity=0.238 Sum_probs=44.7
Q ss_pred ccccCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcC--cchHHHHHHH
Q 030647 28 QDRYLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTIN--GDDLLWAMAT 97 (174)
Q Consensus 28 ~D~~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~--~eDVl~AL~~ 97 (174)
-...+|-.... |+++.+.--|-+|.+.||++||...=.||.......-++++++++. -.+|.++|..
T Consensus 424 ~st~vp~~~~~---ke~ia~~~ei~~ei~~a~~~~~r~l~~~l~~~~~~~~~~~~~~~~~~~~p~~~~~~~~ 492 (621)
T 2q2e_B 424 ASINVPFTSES---KDAIADIPVIKEEIDLAIKEVARKLKHYLSKQSNLKKRREKEIIITKVLPKLAAKVAH 492 (621)
T ss_dssp ECSSCCBSSSS---SSSBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHTTSSHHHHTTTTTTT
T ss_pred eecCCCcCCcc---hhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445544432 4555544469999999999999999999998776666656555554 2445555543
No 106
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=35.54 E-value=44 Score=25.67 Aligned_cols=38 Identities=16% Similarity=0.040 Sum_probs=31.6
Q ss_pred CccchHHHHHHHHHHHHHHHHHHHHHHHHhH-hcCCCCcCcchHHHHHHHc
Q 030647 49 GKIAKDAKETVQECVSEFISFITSEASDKCQ-REKRKTINGDDLLWAMATL 98 (174)
Q Consensus 49 ~rISkDA~~al~~~ateFI~~LtseA~e~~~-~~kRKTI~~eDVl~AL~~L 98 (174)
..+|.+++.+|++ |...++ +-+...|+.+||+.||-+-
T Consensus 97 ~~~S~~l~~vL~~------------A~~~A~l~~gd~~I~teHLLLALl~~ 135 (171)
T 3zri_A 97 PAFSPLLVELLQE------------AWLLSSTELEQAELRSGAIFLAALTR 135 (171)
T ss_dssp CEECHHHHHHHHH------------HHHHHHTTTCCSSBCHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHH------------HHHHHHHHcCCCEEcHHHHHHHHHhC
Confidence 4688888888886 778888 8899999999999998543
No 107
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=34.51 E-value=86 Score=26.01 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=37.5
Q ss_pred HHHHHHhhCCC-CCccchHHHHHHHHHHH----HHHHHHHHHHHHHhHh------------cCCCCcCcchHHHHHHHcC
Q 030647 37 ISRIMKKALPA-NGKIAKDAKETVQECVS----EFISFITSEASDKCQR------------EKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 37 V~RImK~~LP~-~~rISkDA~~al~~~at----eFI~~LtseA~e~~~~------------~kRKTI~~eDVl~AL~~Lg 99 (174)
...|++..+.. ...++.++...|.+.+. .-|..|..+|...+.+ ...+.|+.+|+..||+...
T Consensus 256 r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ 335 (357)
T 3d8b_A 256 RKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVR 335 (357)
T ss_dssp HHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHG
T ss_pred HHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcC
Confidence 33444443321 34577777777766443 2455555665544444 2346899999999998764
No 108
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=34.48 E-value=1e+02 Score=20.57 Aligned_cols=41 Identities=12% Similarity=0.091 Sum_probs=28.9
Q ss_pred HHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHHHH
Q 030647 74 ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRY 114 (174)
Q Consensus 74 A~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~~y 114 (174)
+....-.++.-.|+.+++..+|..+|..-=.+.++..+..+
T Consensus 89 ~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~ 129 (147)
T 4ds7_A 89 AFKVFDKNGDGLISAAELKHVLTSIGEKLTDAEVDEMLREV 129 (147)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 44455566777899999999999998654445555555544
No 109
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=34.22 E-value=19 Score=23.58 Aligned_cols=22 Identities=9% Similarity=0.268 Sum_probs=18.3
Q ss_pred cCcchHHHHHHHcCCCchhHHH
Q 030647 86 INGDDLLWAMATLGFEDYIDPL 107 (174)
Q Consensus 86 I~~eDVl~AL~~LgF~~yv~~l 107 (174)
=+.+||..-|+.+||++|++..
T Consensus 7 Ws~~~V~~WL~~~gl~~y~~~F 28 (74)
T 2gle_A 7 WSVQQVSHWLVGLSLDQYVSEF 28 (74)
T ss_dssp CCSGGGHHHHHHTTTHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHH
Confidence 4789999999999998887644
No 110
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=33.89 E-value=18 Score=27.80 Aligned_cols=33 Identities=21% Similarity=0.260 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 66 FISFITSEASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 66 FI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
-|.-|..+|...|...++.+|+.+|+..|+++.
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~ 249 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERV 249 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 345555666677777788899999999988764
No 111
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=32.65 E-value=71 Score=18.63 Aligned_cols=37 Identities=8% Similarity=0.075 Sum_probs=23.3
Q ss_pred HHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHH
Q 030647 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (174)
Q Consensus 76 e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~ 112 (174)
...-.++.-.|+.+++..+|..+|..--...+...+.
T Consensus 8 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~ 44 (67)
T 1tiz_A 8 EKFDKNKDGKLSLDEFREVALAFSPYFTQEDIVKFFE 44 (67)
T ss_dssp HHHCTTSSSCEEHHHHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3444556667888888888888876543444444433
No 112
>3fs7_A Parvalbumin, thymic; calcium-binding protein, EF-hand, acetylation, calcium, metal binding protein; 1.95A {Gallus gallus} SCOP: a.39.1.4 PDB: 2kqy_A
Probab=32.37 E-value=1e+02 Score=20.01 Aligned_cols=72 Identities=14% Similarity=0.153 Sum_probs=45.0
Q ss_pred cCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHH---------HHHHHHHhHhcCCCCcCcchHHHHHHHc---
Q 030647 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFI---------TSEASDKCQREKRKTINGDDLLWAMATL--- 98 (174)
Q Consensus 31 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~L---------tseA~e~~~~~kRKTI~~eDVl~AL~~L--- 98 (174)
.+....|.++++..= .+..|+-+ +|+..+ ...+....-.++.-.|+.+++..+|..+
T Consensus 6 ~~~~~ei~~~~~~~D-~~g~i~~~----------eF~~~~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~ 74 (109)
T 3fs7_A 6 ILSAKDIESALSSCQ-AADSFNYK----------SFFSTVGLSSKTPDQIKKVFGILDQDKSGFIEEEELQLFLKNFSSS 74 (109)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTCCHHHHHHHHHHHSTTCSSSBCHHHHHTTGGGTCTT
T ss_pred cCCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHhcCCCcHHHHHHHHHHHCCCCCCeEeHHHHHHHHHHHhcc
Confidence 456677888888764 35566653 233222 1234455566677799999999999999
Q ss_pred CCCchhHHHHHHHHH
Q 030647 99 GFEDYIDPLKIYLTR 113 (174)
Q Consensus 99 gF~~yv~~lk~~L~~ 113 (174)
|..--.+.++..+..
T Consensus 75 ~~~~~~~~~~~~~~~ 89 (109)
T 3fs7_A 75 ARVLTSAETKAFLAA 89 (109)
T ss_dssp SCCCCHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHH
Confidence 554444455544443
No 113
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=32.22 E-value=62 Score=28.31 Aligned_cols=67 Identities=10% Similarity=0.239 Sum_probs=44.7
Q ss_pred CchhHHHHHHHhhCC--------CCCccchHHHHHHHHHHH----HHHHHHHHHHHHHhHhc--CCCCcCcchHHHHHHH
Q 030647 32 LPIANISRIMKKALP--------ANGKIAKDAKETVQECVS----EFISFITSEASDKCQRE--KRKTINGDDLLWAMAT 97 (174)
Q Consensus 32 LP~A~V~RImK~~LP--------~~~rISkDA~~al~~~at----eFI~~LtseA~e~~~~~--kRKTI~~eDVl~AL~~ 97 (174)
|+...+..|++..+. .+..|+.++.+.|.+.+. +.++.|-. |...|... ++++|+.+||..++..
T Consensus 165 l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~-a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 165 LSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEM-MADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp CCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHH-HHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHH-HHHhcccccCCCCccCHHHHHHHHhh
Confidence 566777777777654 235799999999988653 33443332 33344322 5678999999999986
Q ss_pred cC
Q 030647 98 LG 99 (174)
Q Consensus 98 Lg 99 (174)
.-
T Consensus 244 ~~ 245 (447)
T 3pvs_A 244 RS 245 (447)
T ss_dssp CC
T ss_pred hh
Confidence 53
No 114
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=31.83 E-value=50 Score=23.52 Aligned_cols=35 Identities=11% Similarity=0.135 Sum_probs=26.0
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHH
Q 030647 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (174)
Q Consensus 50 rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~ 96 (174)
.+|..+..+|++ |...++..+...|+.+||+.||-
T Consensus 82 ~~s~~~~~vl~~------------A~~~a~~~~~~~i~~ehlLlall 116 (148)
T 1khy_A 82 QPSQDLVRVLNL------------CDKLAQKRGDNFISSELFVLAAL 116 (148)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CcCHHHHHHHHH------------HHHHHHHcCCCeecHHHHHHHHH
Confidence 356655555544 66677777888999999999986
No 115
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=31.68 E-value=1.9e+02 Score=22.85 Aligned_cols=68 Identities=15% Similarity=0.064 Sum_probs=41.7
Q ss_pred cCchhHHHHHHHhhCC-CCCccchHHHHHHHHHH----HHHHHHHHHHHHHHhHhcC-CCCcCcchHHHHHHHcC
Q 030647 31 YLPIANISRIMKKALP-ANGKIAKDAKETVQECV----SEFISFITSEASDKCQREK-RKTINGDDLLWAMATLG 99 (174)
Q Consensus 31 ~LP~A~V~RImK~~LP-~~~rISkDA~~al~~~a----teFI~~LtseA~e~~~~~k-RKTI~~eDVl~AL~~Lg 99 (174)
.++...+..+++..+. .+..|+.++...|.+.+ ...++.|-..+ ..+.+.+ ++.|+.+||..++..+.
T Consensus 191 ~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~-~~~~~~~~~~~It~~~v~~~~~~~~ 264 (353)
T 1sxj_D 191 ALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSAS-KGAQYLGDGKNITSTQVEELAGVVP 264 (353)
T ss_dssp CCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTH-HHHHHHCSCCCCCHHHHHHHHTCCC
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-HhcCCCccCccccHHHHHHHhCCCC
Confidence 3455566666665542 35679999988888764 34444443322 2333333 33899999999887543
No 116
>2l09_A ASR4154 protein; proto-chlorophyllide reductase 57 KD subunit superfamily, ST genomics, PSI-2, protein structure initiative; NMR {Nostoc SP}
Probab=30.48 E-value=27 Score=23.38 Aligned_cols=49 Identities=8% Similarity=0.057 Sum_probs=33.3
Q ss_pred CccchHHHHHHHHHHHHHHHHHHH-HHHHHhHhcCCCCcCcchHHHHHHHc
Q 030647 49 GKIAKDAKETVQECVSEFISFITS-EASDKCQREKRKTINGDDLLWAMATL 98 (174)
Q Consensus 49 ~rISkDA~~al~~~ateFI~~Lts-eA~e~~~~~kRKTI~~eDVl~AL~~L 98 (174)
+..+.||...|.+.= -|+.=-.. ..-..|+..+...||.+.+..|-+.+
T Consensus 3 l~Wt~EAe~~LkkIP-~FVR~kvrr~tE~~Are~G~~~IT~ev~~~AK~~~ 52 (62)
T 2l09_A 3 LRWTSEAKTKLKNIP-FFARSQAKARIEQLARQAEQDIVTPELVEQARLEF 52 (62)
T ss_dssp CEECHHHHHHHHTSC-GGGHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCCCeEcHHHHHHHHHHH
Confidence 457788888877732 34333332 33467888899999999998886544
No 117
>1kw4_A Polyhomeotic; SAM domain, polycomb group, polymer, DNA binding protein; 1.75A {Drosophila melanogaster} SCOP: a.60.1.2 PDB: 1pk1_A
Probab=30.39 E-value=29 Score=24.13 Aligned_cols=24 Identities=29% Similarity=0.464 Sum_probs=19.9
Q ss_pred CcCcchHHHHHHHc-CCCchhHHHH
Q 030647 85 TINGDDLLWAMATL-GFEDYIDPLK 108 (174)
Q Consensus 85 TI~~eDVl~AL~~L-gF~~yv~~lk 108 (174)
.-+.+||..-|+.+ ||++|++..+
T Consensus 16 ~Ws~edV~~wL~~l~gl~~y~~~F~ 40 (89)
T 1kw4_A 16 SWSVDDVSNFIRELPGCQDYVDDFI 40 (89)
T ss_dssp GCCHHHHHHHHHTSTTCGGGHHHHH
T ss_pred hCCHHHHHHHHHHCcChHHHHHHHH
Confidence 45789999999999 9998876654
No 118
>3bow_A Calpain-2 catalytic subunit; cysteine protease, inhibitor, cell membrane, hydrolase, MEMB protease, thiol protease, phosphoprotein; 2.40A {Rattus norvegicus} PDB: 3df0_A 1df0_A 1u5i_A 1kfu_L 1kfx_L
Probab=30.06 E-value=2.5e+02 Score=25.90 Aligned_cols=84 Identities=13% Similarity=0.232 Sum_probs=47.5
Q ss_pred cccCchhHHHHHHHhhCCC-----CCccchHHHHHHHHH----------HHHHHHHHHH-----HHHHHhHhcCCCCcCc
Q 030647 29 DRYLPIANISRIMKKALPA-----NGKIAKDAKETVQEC----------VSEFISFITS-----EASDKCQREKRKTING 88 (174)
Q Consensus 29 D~~LP~A~V~RImK~~LP~-----~~rISkDA~~al~~~----------ateFI~~Lts-----eA~e~~~~~kRKTI~~ 88 (174)
|-.|-..-+..+++..+.. +..++.+....|-+. -.||+.++.. .+....-.++.-+|+.
T Consensus 545 dG~Is~~El~~~L~~l~~~~~~~~g~~~s~~~~~~l~~~~D~d~~G~I~f~EF~~l~~~~~~l~~~F~~~D~d~dG~Is~ 624 (714)
T 3bow_A 545 DAEISAFELQTILRRVLAKREDIKSDGFSIETCKIMVDMLDEDGSGKLGLKEFYILWTKIQKYQKIYREIDVDRSGTMNS 624 (714)
T ss_dssp GTSBCHHHHHHHHHHHHTTCTTSCCSCCCHHHHHHHHHHHCCSSCSSBCHHHHHHHHHHHHHHHHHHHHHCTTCCSSEEH
T ss_pred CCcCCHHHHHHHHHHHhhhcccccCCCCCHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHHHHHHHHHHhCCCCCCeECH
Confidence 3445556666666665321 233444443333332 2456655543 3445555667779999
Q ss_pred chHHHHHHHcCCCchhHHHHHHHH
Q 030647 89 DDLLWAMATLGFEDYIDPLKIYLT 112 (174)
Q Consensus 89 eDVl~AL~~LgF~~yv~~lk~~L~ 112 (174)
+++..+|+.+|+.-=.+.++..+.
T Consensus 625 ~El~~~L~~~G~~ls~~~~~~l~~ 648 (714)
T 3bow_A 625 YEMRKALEEAGFKLPCQLHQVIVA 648 (714)
T ss_dssp HHHHHHHHHTTEECCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHH
Confidence 999999999986533334444333
No 119
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=29.75 E-value=1.5e+02 Score=21.15 Aligned_cols=28 Identities=11% Similarity=0.230 Sum_probs=22.4
Q ss_pred HHHHhHhcCCCCcCcchHHHHHHHcCCC
Q 030647 74 ASDKCQREKRKTINGDDLLWAMATLGFE 101 (174)
Q Consensus 74 A~e~~~~~kRKTI~~eDVl~AL~~LgF~ 101 (174)
+....-.++.-+|+.+++..+|..+|+.
T Consensus 44 ~F~~~D~d~~G~i~~~El~~~l~~~g~~ 71 (180)
T 3mse_B 44 LFYKLDTNHNGSLSHREIYTVLASVGIK 71 (180)
T ss_dssp HHHHHCTTCSSSEEHHHHHHHHHHTTCC
T ss_pred HHHHhCCCCCCcCCHHHHHHHHHHcCCC
Confidence 3445556677799999999999999986
No 120
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=28.48 E-value=59 Score=26.12 Aligned_cols=69 Identities=14% Similarity=0.124 Sum_probs=46.3
Q ss_pred chhHHHHHHHhhCC-CCCccchHHHHHHHHHHHH---HHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCC
Q 030647 33 PIANISRIMKKALP-ANGKIAKDAKETVQECVSE---FISFITSEASDKCQREKRKTINGDDLLWAMATLGFE 101 (174)
Q Consensus 33 P~A~V~RImK~~LP-~~~rISkDA~~al~~~ate---FI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~ 101 (174)
+...+..|++..+. .+..++.++...|.+.+.- .+..+...+...|...++.+|+.+||..++..+++.
T Consensus 185 ~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~ 257 (338)
T 3pfi_A 185 KDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIALRLLKRVRDFADVNDEEIITEKRANEALNSLGVN 257 (338)
T ss_dssp CHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHTCC
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHHhCCc
Confidence 35555666665543 2356899998888874322 223333445567777778899999999999987765
No 121
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=28.27 E-value=1.4e+02 Score=20.76 Aligned_cols=41 Identities=20% Similarity=0.201 Sum_probs=30.7
Q ss_pred HHHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHHH
Q 030647 73 EASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTR 113 (174)
Q Consensus 73 eA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~~ 113 (174)
.|....-.++.-+|+.+++..+|..+|..--...++..+..
T Consensus 87 ~aF~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~~~ 127 (148)
T 2lmt_A 87 EAFKIFDRDGDGFISPAELRFVMINLGEKVTDEEIDEMIRE 127 (148)
T ss_dssp HHHHHHHSSCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHCCCCcCcCcHHHHHHHHHHcCccccHHHHHHHHHH
Confidence 45566667777899999999999999987655666655443
No 122
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=27.22 E-value=62 Score=22.09 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=35.2
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHHH
Q 030647 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTR 113 (174)
Q Consensus 50 rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~~ 113 (174)
.++.|-..-|.+ |....-.++.-+|+.+++..+|+.+|+.-=...++..+..
T Consensus 29 ~l~~~~~~el~~------------~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~~ 80 (100)
T 2lv7_A 29 DIPEDELEEIRE------------AFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQR 80 (100)
T ss_dssp CCCGGGHHHHHH------------HHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHHH
T ss_pred cCCHHHHHHHHH------------HHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 466665555543 4466677788899999999999999985434445544443
No 123
>2kz2_A Calmodulin, CAM; TR2C, metal binding protein; NMR {Gallus gallus}
Probab=27.10 E-value=94 Score=20.34 Aligned_cols=36 Identities=14% Similarity=0.135 Sum_probs=24.2
Q ss_pred HHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHH
Q 030647 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYL 111 (174)
Q Consensus 76 e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L 111 (174)
...-.++.-.|+.+++..+|..+|+.-=.+.++..+
T Consensus 36 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~e~~~l~ 71 (94)
T 2kz2_A 36 RVEDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMI 71 (94)
T ss_dssp HHHCTTCCSCBCHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred HHHCCCCcCcCCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344556677899999999999998753333444433
No 124
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=26.98 E-value=69 Score=24.94 Aligned_cols=52 Identities=10% Similarity=0.052 Sum_probs=31.1
Q ss_pred CccchHHHHHHHHHHHH------------HHHHHHHH----HHHHhHhcCCC-CcCcchHHHHHHHcCC
Q 030647 49 GKIAKDAKETVQECVSE------------FISFITSE----ASDKCQREKRK-TINGDDLLWAMATLGF 100 (174)
Q Consensus 49 ~rISkDA~~al~~~ate------------FI~~Ltse----A~e~~~~~kRK-TI~~eDVl~AL~~LgF 100 (174)
..|+.++.+.|.+.+.. ....|-.. +.+.+..++++ +|+.+||..|++.+..
T Consensus 233 ~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~~~ 301 (310)
T 1ofh_A 233 IAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEVVE 301 (310)
T ss_dssp EEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSSSS
T ss_pred eccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhhhh
Confidence 46999999998887632 22222221 11222223322 5999999999986643
No 125
>1pva_A Parvalbumin; calcium binding; 1.65A {Esox lucius} SCOP: a.39.1.4 PDB: 2pas_A 3pat_A
Probab=26.68 E-value=86 Score=20.42 Aligned_cols=71 Identities=14% Similarity=0.286 Sum_probs=42.1
Q ss_pred CchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHH---------HHHHHHhHhcCCCCcCcchHHHHHHHc---C
Q 030647 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFIT---------SEASDKCQREKRKTINGDDLLWAMATL---G 99 (174)
Q Consensus 32 LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~Lt---------seA~e~~~~~kRKTI~~eDVl~AL~~L---g 99 (174)
+...-|.++++..= .+..|+-+ +|+.++. ..+....-.++.-+|+.+++..+|..+ |
T Consensus 7 ~t~~e~~~~~~~~d-~~g~i~~~----------ef~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g 75 (110)
T 1pva_A 7 LKADDIKKALDAVK-AEGSFNHK----------KFFALVGLKAMSANDVKKVFKAIDADASGFIEEEELKFVLKSFAADG 75 (110)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHH----------HHHHHHTCTTSCHHHHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTC
T ss_pred CCHHHHHHHHHhcC-CCCcCcHH----------HHHHHHccCcchHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHhhcC
Confidence 45566777777653 34456543 2222221 234455566777899999999999999 4
Q ss_pred CCchhHHHHHHHHH
Q 030647 100 FEDYIDPLKIYLTR 113 (174)
Q Consensus 100 F~~yv~~lk~~L~~ 113 (174)
..--.+.++..+..
T Consensus 76 ~~~~~~~~~~~~~~ 89 (110)
T 1pva_A 76 RDLTDAETKAFLKA 89 (110)
T ss_dssp CCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 43333444444433
No 126
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=26.56 E-value=41 Score=26.01 Aligned_cols=58 Identities=21% Similarity=0.169 Sum_probs=33.8
Q ss_pred HHHHHHhhCCCCCccchHH-HHHHHHHHHH----HHHHHHHHHHHHhHhcCCCCcCcchHHHHH
Q 030647 37 ISRIMKKALPANGKIAKDA-KETVQECVSE----FISFITSEASDKCQREKRKTINGDDLLWAM 95 (174)
Q Consensus 37 V~RImK~~LP~~~rISkDA-~~al~~~ate----FI~~LtseA~e~~~~~kRKTI~~eDVl~AL 95 (174)
..+|++..+. +..++.|+ ...|.+.+.- -|.-+..+|...|...++.+|+.+|+.+|+
T Consensus 191 r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 191 REQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHc-CCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 3445554432 33455444 3444443322 233444566667777888899999999886
No 127
>1rwy_A Parvalbumin alpha; EF-hand, calcium-binding, calcium-binding protein; HET: PG4; 1.05A {Rattus norvegicus} SCOP: a.39.1.4 PDB: 1rtp_1* 2jww_A 3f45_A 1s3p_A 1xvj_A 1rjv_A 1rk9_A 1g33_A
Probab=26.56 E-value=98 Score=20.08 Aligned_cols=79 Identities=10% Similarity=0.027 Sum_probs=41.7
Q ss_pred CchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc---CCCchhHHHH
Q 030647 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL---GFEDYIDPLK 108 (174)
Q Consensus 32 LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L---gF~~yv~~lk 108 (174)
+....|.+|++..= .+..|+-+--..+......-.. -...+....-.++.-+|+.+++..+|..+ |..--.+.++
T Consensus 6 ~t~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~ 83 (109)
T 1rwy_A 6 LSAEDIKKAIGAFT-AADSFDHKKFFQMVGLKKKSAD-DVKKVFHILDKDKSGFIEEDELGSILKGFSSDARDLSAKETK 83 (109)
T ss_dssp SCHHHHHHHHHTTC-STTCCCHHHHHHHHTGGGSCHH-HHHHHHHHHSTTCSSEECHHHHHTHHHHHCTTCCCCCHHHHH
T ss_pred CCHHHHHHHHHHcC-CCCcEeHHHHHHHHhcCcchHH-HHHHHHHHHCCCCCCeEcHHHHHHHHHHHhccCCCCCHHHHH
Confidence 45566777777653 4456664322111100000000 11234455566677789999999999999 5443334444
Q ss_pred HHHH
Q 030647 109 IYLT 112 (174)
Q Consensus 109 ~~L~ 112 (174)
..+.
T Consensus 84 ~~~~ 87 (109)
T 1rwy_A 84 TLMA 87 (109)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 128
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=26.07 E-value=90 Score=28.75 Aligned_cols=38 Identities=16% Similarity=0.323 Sum_probs=32.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 50 rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
+++..++.+|.. |.+.|.+.+...|.++|++.||=.-+
T Consensus 5 ~~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHlLlaLl~~~ 42 (758)
T 3pxi_A 5 RFTERAQKVLAL------------AQEEALRLGHNNIGTEHILLGLVREG 42 (758)
T ss_dssp CBCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHHHSC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCcccHHHHHHHHHhcc
Confidence 678888888875 77889999999999999999996554
No 129
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=26.03 E-value=52 Score=26.54 Aligned_cols=65 Identities=8% Similarity=0.018 Sum_probs=37.3
Q ss_pred cCchhHHHHHHHhhCCC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHH
Q 030647 31 YLPIANISRIMKKALPA-NGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (174)
Q Consensus 31 ~LP~A~V~RImK~~LP~-~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~ 96 (174)
.++...+..+++..+.. +..++.++...|.+.+.--+..+.......+. ....+|+.+||..++.
T Consensus 177 ~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~-~~~~~i~~~~v~~~~~ 242 (373)
T 1jr3_A 177 ALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIA-SGDGQVSTQAVSAMLG 242 (373)
T ss_dssp CCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHH-HTTTCBCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHH-hcCCcccHHHHHHHhC
Confidence 35566677777655432 45788988888877654333333333222222 2245688887766654
No 130
>2ovk_C Myosin catalytic light chain LC-1, mantle muscle, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_C 2ekw_C 2oy6_C* 3i5f_C* 3i5g_C 3i5h_C 3i5i_C
Probab=25.91 E-value=1.3e+02 Score=20.75 Aligned_cols=40 Identities=23% Similarity=0.163 Sum_probs=27.1
Q ss_pred HHHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHH
Q 030647 73 EASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (174)
Q Consensus 73 eA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~ 112 (174)
.|....-.++.-+|+.+++..+|..+|..-=.+.+...+.
T Consensus 89 ~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~ 128 (159)
T 2ovk_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIFT 128 (159)
T ss_dssp HHHHHTCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHHH
T ss_pred HHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3455565667778999999999999986433334444433
No 131
>3h4s_E KCBP interacting Ca2+-binding protein; kinesin, motor protein, regulation, complex, calcium, EF- hand, calmodulin, ATP-binding, microtubule; HET: ADP; 2.40A {Arabidopsis thaliana}
Probab=25.81 E-value=75 Score=22.17 Aligned_cols=26 Identities=19% Similarity=0.213 Sum_probs=18.0
Q ss_pred HHHhHhcCCCCcCcchHHHHHHHcCC
Q 030647 75 SDKCQREKRKTINGDDLLWAMATLGF 100 (174)
Q Consensus 75 ~e~~~~~kRKTI~~eDVl~AL~~LgF 100 (174)
....-.++.-.|+.+++..+|..+|+
T Consensus 46 F~~~D~d~~G~I~~~el~~~l~~~g~ 71 (135)
T 3h4s_E 46 FSLLADPERHLITAESLRRNSGILGI 71 (135)
T ss_dssp HHHHSBTTTTBBCHHHHHHHGGGGTC
T ss_pred HHHHCCCCCCcCCHHHHHHHHHHhCC
Confidence 34445556667888888888887775
No 132
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=25.47 E-value=1.4e+02 Score=19.31 Aligned_cols=28 Identities=11% Similarity=-0.028 Sum_probs=21.8
Q ss_pred HHHHhHhcCCCCcCcchHHHHHHHcCCC
Q 030647 74 ASDKCQREKRKTINGDDLLWAMATLGFE 101 (174)
Q Consensus 74 A~e~~~~~kRKTI~~eDVl~AL~~LgF~ 101 (174)
+....-.++.-.|+.+++..+|..+|+.
T Consensus 29 ~F~~~D~d~~G~i~~~el~~~l~~~g~~ 56 (105)
T 1wlz_A 29 EFENFDTMKTNTISREEFRAICNRRVQI 56 (105)
T ss_dssp HHHHHCTTCSSCBCHHHHHHHHHHHTCC
T ss_pred HHHHHCCCCCCcCcHHHHHHHHHHhCCC
Confidence 3455556677789999999999998875
No 133
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A*
Probab=25.47 E-value=34 Score=30.61 Aligned_cols=36 Identities=14% Similarity=0.372 Sum_probs=27.5
Q ss_pred HhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHH
Q 030647 42 KKALPANGKIAKDAKETVQECVSEFISFITSEASDK 77 (174)
Q Consensus 42 K~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~ 77 (174)
|+++.+.--|-+|.+.||++||...=.||+......
T Consensus 428 k~~i~~~~ei~~ei~~a~~~~~r~l~~~~~~~~~~~ 463 (471)
T 1mu5_A 428 KESIAEVEDIEKEIKNALMEVARKLKQYLSEKRKEQ 463 (471)
T ss_dssp CCCBCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 344444446899999999999999999998754433
No 134
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=25.42 E-value=2e+02 Score=25.54 Aligned_cols=41 Identities=15% Similarity=0.118 Sum_probs=29.3
Q ss_pred HHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHHHH
Q 030647 74 ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRY 114 (174)
Q Consensus 74 A~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~~y 114 (174)
+....-.++.-+|+.+++..+|+.+|+.-=.+.++..+..|
T Consensus 390 aFk~fD~D~dG~Is~eELr~~L~~lG~~ls~eei~~Lf~~~ 430 (450)
T 3sg6_A 390 AFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREA 430 (450)
T ss_dssp HHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHHHh
Confidence 45555566777899999999999999765445555555444
No 135
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=25.41 E-value=72 Score=26.27 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHhHhcCC------------------CCcCcchHHHHHHHcCC
Q 030647 64 SEFISFITSEASDKCQREKR------------------KTINGDDLLWAMATLGF 100 (174)
Q Consensus 64 teFI~~LtseA~e~~~~~kR------------------KTI~~eDVl~AL~~LgF 100 (174)
..|..-|+-.-.++|..... -.|+.+||+.|++.|.-
T Consensus 89 gdfy~eLavqIvEvC~~tr~~nGGli~l~el~~~~~r~~~IS~dDi~rAik~L~~ 143 (233)
T 1u5t_A 89 NDFYYEVCLKVIEICRQTKDMNGGVISFQELEKVHFRKLNVGLDDLEKSIDMLKS 143 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSSSCEEHHHHHHTTTTTTTCCHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHhcCCeeEHHHHHHHHHhhcCCCHHHHHHHHHHhhh
Confidence 67888888888888876543 28999999999997643
No 136
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=25.14 E-value=1.7e+02 Score=20.01 Aligned_cols=81 Identities=14% Similarity=0.060 Sum_probs=43.9
Q ss_pred CchhHHHHHHHhhCCC-CCccchHH-HHHHHHHHHHH-HHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHH
Q 030647 32 LPIANISRIMKKALPA-NGKIAKDA-KETVQECVSEF-ISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLK 108 (174)
Q Consensus 32 LP~A~V~RImK~~LP~-~~rISkDA-~~al~~~ateF-I~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk 108 (174)
++...|.++++..=.+ +..|+-+- +.++......- ..--...|....-.++.-.|+.+++..+|..+|..-=.+.+.
T Consensus 39 ~~~~~~~~~~~~~d~~~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~ 118 (143)
T 2obh_A 39 PKKEEIKKMISEIDKEGTGKMNFGDFLTVMTQKMSEKDTKEEILKAFKLFDDDETGKISFKNLKRVAKELGENLTDEELQ 118 (143)
T ss_dssp CCHHHHHHHHHHHTTTCCSEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCeeeHHHHHHHHHHHhccccHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHH
Confidence 4555677777765332 34566532 22222211110 001122455555666777899999999999998653334444
Q ss_pred HHHH
Q 030647 109 IYLT 112 (174)
Q Consensus 109 ~~L~ 112 (174)
..+.
T Consensus 119 ~~~~ 122 (143)
T 2obh_A 119 EMID 122 (143)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 137
>2pvb_A Protein (parvalbumin); calcium binding protein, metal binding protein; 0.91A {Esox lucius} SCOP: a.39.1.4 PDB: 1pvb_A 2pal_A 1pal_A 3pal_A 4pal_A 4cpv_A 1cdp_A 5cpv_A 1b8r_A 1b9a_A 1b8l_A 1b8c_A 1a75_B 1a75_A
Probab=24.56 E-value=1.5e+02 Score=19.20 Aligned_cols=80 Identities=14% Similarity=0.054 Sum_probs=44.7
Q ss_pred CchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHc---CCCchhHHHH
Q 030647 32 LPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATL---GFEDYIDPLK 108 (174)
Q Consensus 32 LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~L---gF~~yv~~lk 108 (174)
++...|.+|++..= .+..|+-+--..+-.....-.. -...+....-.++.-+|+.+++..+|..+ |..-=.+.++
T Consensus 6 ~~~~e~~~l~~~~d-~~g~i~~~eF~~~~~~~~~~~~-~l~~~F~~~D~d~~G~I~~~el~~~l~~~~~~g~~~~~~~~~ 83 (108)
T 2pvb_A 6 LKDADVAAALAACS-AADSFKHKEFFAKVGLASKSLD-DVKKAFYVIDQDKSGFIEEDELKLFLQNFSPSARALTDAETK 83 (108)
T ss_dssp SCHHHHHHHHHHTC-STTCCCHHHHHHHHTGGGSCHH-HHHHHHHHHCTTCSSSBCHHHHHTGGGGTCTTSCCCCHHHHH
T ss_pred CCHHHHHHHHHHhC-CCCcCcHHHHHHHHhCChhHHH-HHHHHHHHHCCCCCCcCCHHHHHHHHHHHhccCCCCCHHHHH
Confidence 56677888888764 4556765432221110000000 11234555666777799999999999999 5543334444
Q ss_pred HHHHH
Q 030647 109 IYLTR 113 (174)
Q Consensus 109 ~~L~~ 113 (174)
..+..
T Consensus 84 ~~~~~ 88 (108)
T 2pvb_A 84 AFLAD 88 (108)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 138
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=24.39 E-value=1.7e+02 Score=21.34 Aligned_cols=37 Identities=14% Similarity=0.047 Sum_probs=24.5
Q ss_pred HHHHHHHHH------------HHHHHhHhcCCCCcCcchHHHHHHHcCCC
Q 030647 64 SEFISFITS------------EASDKCQREKRKTINGDDLLWAMATLGFE 101 (174)
Q Consensus 64 teFI~~Lts------------eA~e~~~~~kRKTI~~eDVl~AL~~LgF~ 101 (174)
.+|+.++.. .+....-.++.-+|+.+++..+| .+|..
T Consensus 109 ~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~~ 157 (196)
T 3dtp_E 109 TMFLTIFGDRIAGTDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TWGEK 157 (196)
T ss_dssp HHHHHHHHHCCCSSCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSSC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCCC
Confidence 567666653 23333444566789999999999 88864
No 139
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=24.25 E-value=2.2e+02 Score=26.14 Aligned_cols=66 Identities=9% Similarity=0.099 Sum_probs=37.9
Q ss_pred cCchhHHHHHHHhhC--CCCCccchHHHHHHHHHHHHHH---------------------HHHHHHHHHHhHhcCCCCcC
Q 030647 31 YLPIANISRIMKKAL--PANGKIAKDAKETVQECVSEFI---------------------SFITSEASDKCQREKRKTIN 87 (174)
Q Consensus 31 ~LP~A~V~RImK~~L--P~~~rISkDA~~al~~~ateFI---------------------~~LtseA~e~~~~~kRKTI~ 87 (174)
.++...+.+.+..+- --...+++++.+.|.+.....= ..|...|.-.|+-..|..|+
T Consensus 393 ~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~ 472 (506)
T 3f8t_A 393 VPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVE 472 (506)
T ss_dssp -CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEEC
T ss_pred CCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCC
Confidence 455666666554332 0134688888777765433321 12334455567777777777
Q ss_pred cchHHHHHH
Q 030647 88 GDDLLWAMA 96 (174)
Q Consensus 88 ~eDVl~AL~ 96 (174)
++||..|+.
T Consensus 473 ~eDV~~Ai~ 481 (506)
T 3f8t_A 473 PEDVDIAAE 481 (506)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777765
No 140
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=24.24 E-value=1.1e+02 Score=20.57 Aligned_cols=38 Identities=16% Similarity=0.052 Sum_probs=25.4
Q ss_pred HHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHHH
Q 030647 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTR 113 (174)
Q Consensus 76 e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~~ 113 (174)
...-.++.-.|+.+++..+|..+|..-=.+.+...+..
T Consensus 83 ~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~~ 120 (143)
T 3j04_B 83 ACFDEEASGFIHEDHLRELLTTMGDRFTDEEVDEMYRE 120 (143)
T ss_dssp TTSCSSSCCCCCTTTHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHCCCCCCeEcHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 33344566789999999999999865444444444433
No 141
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=24.19 E-value=48 Score=26.16 Aligned_cols=59 Identities=20% Similarity=0.169 Sum_probs=34.4
Q ss_pred HHHHHHHhhCCCCCccchHH-HHHHHHHHHH----HHHHHHHHHHHHhHhcCCCCcCcchHHHHH
Q 030647 36 NISRIMKKALPANGKIAKDA-KETVQECVSE----FISFITSEASDKCQREKRKTINGDDLLWAM 95 (174)
Q Consensus 36 ~V~RImK~~LP~~~rISkDA-~~al~~~ate----FI~~LtseA~e~~~~~kRKTI~~eDVl~AL 95 (174)
...+|++..+. +..++.|+ ...|.+...- -|.-+..+|...|...++.+|+.+||..|+
T Consensus 214 ~r~~il~~~~~-~~~~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 214 GREQILRIHAR-GKPLAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHT-TSCBCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHc-cCCCCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 34455555443 34455544 3344433221 233444566667777888899999999886
No 142
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=24.14 E-value=1.8e+02 Score=20.03 Aligned_cols=40 Identities=20% Similarity=0.116 Sum_probs=27.4
Q ss_pred HHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHHH
Q 030647 74 ASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTR 113 (174)
Q Consensus 74 A~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~~ 113 (174)
+....-.++.-.|+.+++..+|..+|..-=.+.+...+..
T Consensus 106 ~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 145 (169)
T 3qrx_A 106 AFRLFDDDNSGTITIKDLRRVAKELGENLTEEELQEMIAE 145 (169)
T ss_dssp HHHHHCTTCSSSBCHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCCHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 3445555677799999999999999865444445544443
No 143
>3ezq_B Protein FADD; apoptosis, DISC, FAS, membrane,receptor, transmembrane; 2.73A {Homo sapiens} PDB: 1e3y_A 1e41_A 3oq9_H
Probab=24.12 E-value=1e+02 Score=22.58 Aligned_cols=36 Identities=14% Similarity=0.019 Sum_probs=29.3
Q ss_pred hHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHHHH
Q 030647 78 CQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTRY 114 (174)
Q Consensus 78 ~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~~y 114 (174)
..++++ .-+.+.++.||.+++..+.++.|+..+++-
T Consensus 57 ~~r~G~-~ATv~~L~~AL~~i~~~diAe~Ie~~l~~~ 92 (122)
T 3ezq_B 57 KNTEKE-NATVAHLVGALRSCQMNLVADLVQEVQQAR 92 (122)
T ss_dssp HHHCTT-TCCHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhhCC-CchHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 344443 458899999999999999999999988754
No 144
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=23.91 E-value=56 Score=30.74 Aligned_cols=35 Identities=23% Similarity=0.265 Sum_probs=30.1
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHH
Q 030647 50 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (174)
Q Consensus 50 rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~ 96 (174)
+++..++.+|.. |.+.|.+.+...|+++|++.||=
T Consensus 5 ~~t~~a~~al~~------------A~~~A~~~~h~~i~~eHLLlaLl 39 (854)
T 1qvr_A 5 RWTQAAREALAQ------------AQVLAQRMKHQAIDLPHLWAVLL 39 (854)
T ss_dssp CSCHHHHHHHHH------------HHHHHHHTTCSEECHHHHHHHHC
T ss_pred hhCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHHH
Confidence 578888888875 77889999999999999999984
No 145
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=23.57 E-value=1.6e+02 Score=22.09 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=44.0
Q ss_pred CccchHHHHHHHHHH-------HHHHHHHHHHHHHHhHhc-CCCCcCcchHHHHHHHcCC--CchhHHHHHHHHH
Q 030647 49 GKIAKDAKETVQECV-------SEFISFITSEASDKCQRE-KRKTINGDDLLWAMATLGF--EDYIDPLKIYLTR 113 (174)
Q Consensus 49 ~rISkDA~~al~~~a-------teFI~~LtseA~e~~~~~-kRKTI~~eDVl~AL~~LgF--~~yv~~lk~~L~~ 113 (174)
..++.|-+.-|.+-| .+-|.-|-..|++..++. +-+.|+-||+..+-+++.= +.|+..+...|..
T Consensus 31 ~plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQKLTDkyIkkID~ll~~ 105 (121)
T 3lf9_A 31 GGGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQKLTDVAVKKIDEVLAA 105 (121)
T ss_dssp SBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666655544433 344667777888777665 5567999999988887654 5788888877653
No 146
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=23.49 E-value=2e+02 Score=20.52 Aligned_cols=54 Identities=22% Similarity=0.290 Sum_probs=35.7
Q ss_pred CCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHH
Q 030647 46 PANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYL 111 (174)
Q Consensus 46 P~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L 111 (174)
|...++|++-+.-|.++ | ...-.++-=+|+.+++..+|+.||+.--...+...+
T Consensus 5 ~~~~~Lt~~qi~elk~~---F---------~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~ 58 (153)
T 3i5g_B 5 PRRVKLSQRQMQELKEA---F---------TMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAML 58 (153)
T ss_dssp --CTTCCHHHHHHHHHH---H---------HHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHH---H---------HHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHH
Confidence 44567888665555542 3 444455667899999999999999876555555443
No 147
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=23.39 E-value=96 Score=25.14 Aligned_cols=66 Identities=9% Similarity=-0.007 Sum_probs=35.8
Q ss_pred cCchhHHHHHHHhhCC-CCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHH
Q 030647 31 YLPIANISRIMKKALP-ANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMA 96 (174)
Q Consensus 31 ~LP~A~V~RImK~~LP-~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~ 96 (174)
.++...+.+.+++.+- .+..|+.+|...|.+.+.-=+..+.++-...+.-.+.++|+.+||...+.
T Consensus 141 ~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~ 207 (343)
T 1jr3_D 141 TPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVN 207 (343)
T ss_dssp CCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHh
Confidence 3455556655555543 35689999998888765432222222222222222334677777655443
No 148
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=23.04 E-value=1.4e+02 Score=21.45 Aligned_cols=39 Identities=21% Similarity=0.146 Sum_probs=27.3
Q ss_pred HHHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHH
Q 030647 73 EASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYL 111 (174)
Q Consensus 73 eA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L 111 (174)
+|....-.++.-+|+.+++..+|..+|..-=-+.+...+
T Consensus 89 ~aF~~fD~d~~G~I~~~el~~~l~~~g~~ls~~e~~~l~ 127 (159)
T 3i5g_C 89 EAFKTFDREGQGLISSAEIRNVLKMLGERITEDQCNDIF 127 (159)
T ss_dssp HHHHHHCTTSSSEECHHHHHHHHHHSSSCCCHHHHHHHH
T ss_pred HHHHHHhcCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 355566667777899999999999999754334444443
No 149
>2znd_A Programmed cell death protein 6; penta-EF-hand protein, calcium binding protein, apoptosis, calcium, endoplasmic reticulum, membrane, nucleus; 1.70A {Homo sapiens} PDB: 2zn9_A 2zn8_A 1hqv_A 3aak_A 2zne_A 2zrs_A 2zrt_A 3aaj_A
Probab=22.89 E-value=1.9e+02 Score=20.21 Aligned_cols=74 Identities=9% Similarity=0.068 Sum_probs=41.1
Q ss_pred CchhHHHHHHHhhCC-CCCccchHH-HHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHH
Q 030647 32 LPIANISRIMKKALP-ANGKIAKDA-KETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKI 109 (174)
Q Consensus 32 LP~A~V~RImK~~LP-~~~rISkDA-~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~ 109 (174)
++...+.++++..=. .+..|+-+- ..++... . -...+....-.++.-.|+.+++..+|..+|..--.+.++.
T Consensus 41 ~~~~~~~~l~~~~D~~~~g~i~~~ef~~~~~~~-~-----~~~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~ 114 (172)
T 2znd_A 41 FNPVTVRSIISMFDRENKAGVNFSEFTGVWKYI-T-----DWQNVFRTYDRDNSGMIDKNELKQALSGFGYRLSDQFHDI 114 (172)
T ss_dssp CCHHHHHHHHHHHCSSSSSEECHHHHHHHHHHH-H-----HHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHH-H-----HHHHHHHHHCCCCCCccCHHHHHHHHHHcCCCCCHHHHHH
Confidence 455667777765532 234666432 2222111 1 1123445555566778999999999999886533344444
Q ss_pred HH
Q 030647 110 YL 111 (174)
Q Consensus 110 ~L 111 (174)
.+
T Consensus 115 ~~ 116 (172)
T 2znd_A 115 LI 116 (172)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 150
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=22.74 E-value=51 Score=27.22 Aligned_cols=15 Identities=33% Similarity=0.616 Sum_probs=13.0
Q ss_pred CCcCcchHHHHHHHc
Q 030647 84 KTINGDDLLWAMATL 98 (174)
Q Consensus 84 KTI~~eDVl~AL~~L 98 (174)
..|+.+||+.|++.|
T Consensus 113 ~~IS~dDi~rAik~L 127 (234)
T 3cuq_A 113 QDVSQDDLIRAIKKL 127 (234)
T ss_dssp SSCCHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHH
Confidence 589999999999754
No 151
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=22.72 E-value=93 Score=18.77 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=19.6
Q ss_pred HhHhcCCCCcCcchHHHHHHHcCCCchhHHHH
Q 030647 77 KCQREKRKTINGDDLLWAMATLGFEDYIDPLK 108 (174)
Q Consensus 77 ~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk 108 (174)
..-..+.-.|+.+++..+|..+|+.-=...++
T Consensus 15 ~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~ 46 (77)
T 2joj_A 15 LFDTNKTGSIDYHELKVAMRALGFDVKKPEIL 46 (77)
T ss_dssp HHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHH
T ss_pred HhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHH
Confidence 33445556788888888888877653333333
No 152
>1y1x_A Leishmania major homolog of programmed cell death protein; SGPP, structural genomics, PSI; 1.95A {Leishmania major} SCOP: a.39.1.8
Probab=22.69 E-value=2e+02 Score=20.84 Aligned_cols=29 Identities=14% Similarity=0.270 Sum_probs=22.0
Q ss_pred HHHHHhHhcCCCCcCcchHHHHHHHcCCC
Q 030647 73 EASDKCQREKRKTINGDDLLWAMATLGFE 101 (174)
Q Consensus 73 eA~e~~~~~kRKTI~~eDVl~AL~~LgF~ 101 (174)
.+....-.++.-+|+.+++..+|..+|+.
T Consensus 97 ~~F~~~D~d~~G~i~~~e~~~~l~~~g~~ 125 (191)
T 1y1x_A 97 EGFRKRDSSGDGRLDSNEVRAALLSSGYQ 125 (191)
T ss_dssp HHHHHHCTTSSSCBCHHHHHHHHHTTSCC
T ss_pred HHHHHhCCCCCCeEcHHHHHHHHHHhCCC
Confidence 34455556667789999999999988864
No 153
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=22.64 E-value=1.8e+02 Score=19.41 Aligned_cols=42 Identities=17% Similarity=0.133 Sum_probs=28.4
Q ss_pred HHHHHhHhcCCCCcCcchHHHHHHH-cCCCchhHHHHHHHHHH
Q 030647 73 EASDKCQREKRKTINGDDLLWAMAT-LGFEDYIDPLKIYLTRY 114 (174)
Q Consensus 73 eA~e~~~~~kRKTI~~eDVl~AL~~-LgF~~yv~~lk~~L~~y 114 (174)
.+....-.++.-.|+.+++..+|.. +|..-=.+.++..+..+
T Consensus 92 ~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~~ 134 (153)
T 3ox6_A 92 DAFREFDTNGDGEISTSELREAMRALLGHQVGHRDIEEIIRDV 134 (153)
T ss_dssp HHHHHHCTTCSSSBCHHHHHHHHHHHHSSCCCHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCcCcHHHHHHHHHHHhcCCCCHHHHHHHHHHh
Confidence 3445555667779999999999998 78654444455544443
No 154
>1rro_A RAT oncomodulin; calcium-binding protein; 1.30A {Rattus rattus} SCOP: a.39.1.4 PDB: 1omd_A 2nln_A 1ttx_A
Probab=22.36 E-value=1.6e+02 Score=18.95 Aligned_cols=67 Identities=9% Similarity=0.102 Sum_probs=38.4
Q ss_pred cCchhHHHHHHHhhCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHHHHcC
Q 030647 31 YLPIANISRIMKKALPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLG 99 (174)
Q Consensus 31 ~LP~A~V~RImK~~LP~~~rISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL~~Lg 99 (174)
.+....|.+|++..= .+..|+-+--..+-.....-... ...+....-.++.-+|+.+++..+|..++
T Consensus 5 ~~t~~e~~~~~~~~d-~~g~i~~~eF~~~~~~~~~~~~~-l~~~F~~~D~d~~G~I~~~el~~~l~~~~ 71 (108)
T 1rro_A 5 ILSAEDIAAALQECQ-DPDTFEPQKFFQTSGLSKMSASQ-VKDIFRFIDNDQSGYLDGDELKYFLQKFQ 71 (108)
T ss_dssp TSCHHHHHHHHHHTC-STTCCCHHHHHHHHSGGGSCHHH-HHHHHHHHCTTCSSEECTHHHHTGGGGTC
T ss_pred cCCHHHHHHHHHHcc-CCCCcCHHHHHHHHhcCcccHHH-HHHHHHHhCCCCCCcCCHHHHHHHHHHHh
Confidence 356677888888764 45566654322221100000000 12344555566777899999999999984
No 155
>2qac_A Myosin A tail domain interacting protein MTIP; malaria invasion, structural genomics, PSI, protein structur initiative, structural genomics of pathogenic protozoa CONS SGPP; 1.70A {Plasmodium falciparum} PDB: 2auc_A
Probab=22.12 E-value=1.4e+02 Score=20.12 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=18.8
Q ss_pred hcC-CCCcCcchHHHHHHHcCCCchhHHHH
Q 030647 80 REK-RKTINGDDLLWAMATLGFEDYIDPLK 108 (174)
Q Consensus 80 ~~k-RKTI~~eDVl~AL~~LgF~~yv~~lk 108 (174)
.++ .-+|+.+++..+|..+|+.--...+.
T Consensus 25 ~d~~~G~i~~~el~~~l~~~g~~~~~~~~~ 54 (146)
T 2qac_A 25 EKSSGGKISIDNASYNARKLGLAPSSIDEK 54 (146)
T ss_dssp HHCBTTBEEHHHHHHHHHHTTCCCCHHHHH
T ss_pred ccCCCCcccHHHHHHHHHHhCCCCCHHHHH
Confidence 344 55788888888888887754333333
No 156
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.89 E-value=38 Score=23.84 Aligned_cols=17 Identities=18% Similarity=0.253 Sum_probs=11.0
Q ss_pred cCcchHHHHHHHcCCCc
Q 030647 86 INGDDLLWAMATLGFED 102 (174)
Q Consensus 86 I~~eDVl~AL~~LgF~~ 102 (174)
=+.+||..-|+.+||++
T Consensus 30 Ws~~~V~~WL~~lgl~~ 46 (103)
T 2e8o_A 30 WGPEQVCSFLRRGGFEE 46 (103)
T ss_dssp CHHHHHHHHHHHHTCCC
T ss_pred CCHHHHHHHHHHcCCCh
Confidence 34566766677777765
No 157
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=21.79 E-value=1e+02 Score=19.05 Aligned_cols=36 Identities=11% Similarity=0.201 Sum_probs=23.5
Q ss_pred HHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHH
Q 030647 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYL 111 (174)
Q Consensus 76 e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L 111 (174)
...-.++.-.|+.+++..+|..+|+.-=...+...+
T Consensus 21 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 56 (85)
T 2ktg_A 21 QLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIV 56 (85)
T ss_dssp HHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 444456666888999999998888753333444433
No 158
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=21.70 E-value=1.4e+02 Score=18.83 Aligned_cols=36 Identities=19% Similarity=0.195 Sum_probs=23.6
Q ss_pred HHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHH
Q 030647 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYL 111 (174)
Q Consensus 76 e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L 111 (174)
...-.++.-.|+.+++..+|..+|+.-=...++..+
T Consensus 27 ~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 62 (90)
T 1avs_A 27 DMFDADGGGDISTKELGTVMRMLGQNPTKEELDAII 62 (90)
T ss_dssp HHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 344455667899999999999888753334444433
No 159
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=21.34 E-value=63 Score=29.63 Aligned_cols=33 Identities=12% Similarity=0.287 Sum_probs=0.0
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCcCcchHHHHH
Q 030647 51 IAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAM 95 (174)
Q Consensus 51 ISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI~~eDVl~AL 95 (174)
+++.++.+|+. |.+.|++.+...|+.+|+|.||
T Consensus 2 ~t~~a~~~l~~------------A~~~A~~~~h~~i~~eHLLlaL 34 (758)
T 1r6b_X 2 LNQELELSLNM------------AFARAREHRHEFMTVEHLLLAL 34 (758)
T ss_dssp BCHHHHHHHHH------------HHHHHHHTTBSEECHHHHHHHH
T ss_pred CCHHHHHHHHH------------HHHHHHHcCCCCccHHHHHHHH
No 160
>2kp7_A Crossover junction endonuclease MUS81; helix-hairpin-helix, tumour suppressor, DNA damage, DNA recombination, DNA repair, hydrolase, magnesium; NMR {Mus musculus}
Probab=21.14 E-value=1.8e+02 Score=20.05 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=14.6
Q ss_pred CCC-chhHHHHHHHHHHHHHhc
Q 030647 99 GFE-DYIDPLKIYLTRYREMEG 119 (174)
Q Consensus 99 gF~-~yv~~lk~~L~~yre~~~ 119 (174)
||+ -....|.+.|.+|.+..+
T Consensus 65 giG~ki~~~L~e~L~~~c~eng 86 (87)
T 2kp7_A 65 HFGDRLCRMLDEKLKQHLASGG 86 (87)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSC
T ss_pred cccHHHHHHHHHHHHHHHHHcC
Confidence 444 367778888888886543
No 161
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=21.02 E-value=2.1e+02 Score=19.66 Aligned_cols=15 Identities=27% Similarity=0.295 Sum_probs=7.4
Q ss_pred CCCCcCcchHHHHHH
Q 030647 82 KRKTINGDDLLWAMA 96 (174)
Q Consensus 82 kRKTI~~eDVl~AL~ 96 (174)
+.-+|+.++.+.++.
T Consensus 77 ~~g~i~~~eF~~~~~ 91 (169)
T 3qrx_A 77 GSGTIDFEEFLTMMT 91 (169)
T ss_dssp SSSSEEHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHH
Confidence 334455555555544
No 162
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=20.97 E-value=1.5e+02 Score=18.66 Aligned_cols=20 Identities=25% Similarity=0.366 Sum_probs=10.8
Q ss_pred cCCCCcCcchHHHHHHHcCC
Q 030647 81 EKRKTINGDDLLWAMATLGF 100 (174)
Q Consensus 81 ~kRKTI~~eDVl~AL~~LgF 100 (174)
++.-.|+.+++..+|..+|+
T Consensus 21 d~~G~i~~~el~~~l~~~g~ 40 (92)
T 2kn2_A 21 DQNGYISASELRHVMINLGE 40 (92)
T ss_dssp TCSSEECHHHHHHHHHHTTC
T ss_pred CCCCeEcHHHHHHHHHHhCC
Confidence 34445555555555555554
No 163
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=20.90 E-value=97 Score=19.26 Aligned_cols=38 Identities=18% Similarity=0.144 Sum_probs=26.1
Q ss_pred HHhHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHHH
Q 030647 76 DKCQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLTR 113 (174)
Q Consensus 76 e~~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~~ 113 (174)
...-.++.-.|+.+++..+|..+|+.-=.+.++..+..
T Consensus 30 ~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~~ 67 (87)
T 1s6j_A 30 KMIDTDNSGTITFDELKDGLKRVGSELMESEIKDLMDA 67 (87)
T ss_dssp HHHCTTCSSCEEHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred HHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 34445667789999999999999876444445544443
No 164
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
Probab=20.77 E-value=1e+02 Score=26.58 Aligned_cols=70 Identities=7% Similarity=0.121 Sum_probs=48.5
Q ss_pred hCCCCCc---cchHHHHHHHHHHHHHHHHHHHHHHHHhHhcCCCCc-CcchHHHHHHHcCCCchhHHHHHHHHHHH
Q 030647 44 ALPANGK---IAKDAKETVQECVSEFISFITSEASDKCQREKRKTI-NGDDLLWAMATLGFEDYIDPLKIYLTRYR 115 (174)
Q Consensus 44 ~LP~~~r---ISkDA~~al~~~ateFI~~LtseA~e~~~~~kRKTI-~~eDVl~AL~~LgF~~yv~~lk~~L~~yr 115 (174)
.+|...+ ++.|-.+-+....+..-.|+.......-... + .. .-+..+.-|+.+|+++|++..+..+++|+
T Consensus 461 ~~p~~~~~~~~t~~e~~~~~~~~~~i~~~~~~~~~~~i~g~-~-~~~~wd~y~~~l~~~g~~~~~~~~q~~yd~~~ 534 (535)
T 3omb_A 461 YIPDYVNMDNMDPSDATKLNTNNAEIFNTTMQKTATWMSKG-G-IDEEWDAYCKQLDSIGLQESTKIWQKWYDTYT 534 (535)
T ss_dssp SCCTTCSGGGSCHHHHHHHHHHHHHHTTTHHHHHHHHHHHC-C-HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred cCCchhccCCCCHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-C-cHHHHHHHHHHHHHCCcHHHHHHHHHHHHHhh
Confidence 3564442 7777777777666666666655444444433 2 22 25678899999999999999999999986
No 165
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=20.75 E-value=43 Score=20.16 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=15.4
Q ss_pred CCcCcchHHHHHHHcCCC
Q 030647 84 KTINGDDLLWAMATLGFE 101 (174)
Q Consensus 84 KTI~~eDVl~AL~~LgF~ 101 (174)
..++.++|+.+++++||.
T Consensus 48 ~~~~~~~i~~~i~~~Gy~ 65 (69)
T 4a4j_A 48 GETTPQILTDAVERAGYH 65 (69)
T ss_dssp TTCCHHHHHHHHHHTTCE
T ss_pred CCCCHHHHHHHHHHcCCc
Confidence 467888999999999985
No 166
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=20.32 E-value=1.5e+02 Score=20.17 Aligned_cols=35 Identities=23% Similarity=0.208 Sum_probs=23.3
Q ss_pred hHhcCCCCcCcchHHHHHHHcCCCchhHHHHHHHH
Q 030647 78 CQREKRKTINGDDLLWAMATLGFEDYIDPLKIYLT 112 (174)
Q Consensus 78 ~~~~kRKTI~~eDVl~AL~~LgF~~yv~~lk~~L~ 112 (174)
.-.++.-+|+.+++..+|..+|+.--...+...+.
T Consensus 25 ~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 25 IDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp HCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred hCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 33455568888888888888887654445554443
No 167
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=20.03 E-value=2e+02 Score=26.15 Aligned_cols=30 Identities=40% Similarity=0.658 Sum_probs=23.0
Q ss_pred hHhcCCCCcCcchHHHHHHHcCCC-chhHHH
Q 030647 78 CQREKRKTINGDDLLWAMATLGFE-DYIDPL 107 (174)
Q Consensus 78 ~~~~kRKTI~~eDVl~AL~~LgF~-~yv~~l 107 (174)
++..++++|+++++.+.-+..||. ++...+
T Consensus 371 ~~~~~~~~l~G~~af~LyDTyGfP~dLt~ei 401 (465)
T 1yfs_A 371 ALEEGRKTLSGKEVFTAYDTYGFPVDLIDEI 401 (465)
T ss_dssp HHHTTCCEECHHHHHHHHHTSCCCHHHHHHH
T ss_pred HHhcCCCcCCHHHHHhhhhccCCCHHHHHHH
Confidence 334466789999999999999996 555544
Done!