BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030650
         (174 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q66665|UL37_EHV2 Capsid assembly protein 63 OS=Equine herpesvirus 2 (strain 86/87)
           GN=63 PE=3 SV=1
          Length = 965

 Score = 30.8 bits (68), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 3/63 (4%)

Query: 56  VSRSINSSNLPALGTKRSQSVDRRRQLSTITRMLITSTRSLS--VSFQGET-FSLPISKT 112
           + R +  S   ALG  R  +   RR+L  + + L+T+ R L   VS   ET  +LP++K 
Sbjct: 189 LERWLALSYAAALGAARDNAPKHRRELRALAKSLLTTERDLFAPVSVVTETSLTLPLAKE 248

Query: 113 KAK 115
           +A+
Sbjct: 249 RAR 251


>sp|Q922J3|CLIP1_MOUSE CAP-Gly domain-containing linker protein 1 OS=Mus musculus GN=Clip1
           PE=1 SV=1
          Length = 1391

 Score = 29.6 bits (65), Expect = 9.3,   Method: Composition-based stats.
 Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 21  SSRYLSPSPSSSSSL--TTATTTAKSQSQSQRFSSLLVSRSINSSNLPALGTKRSQSVDR 78
           ++  +S SP++ S++    + +TAK  S + + S+L  + S + SNL   G+ +      
Sbjct: 152 AATMVSSSPATPSNIPHKPSQSTAKEPSATPQISNLTKTASESISNLSEAGSVKKG---- 207

Query: 79  RRQLSTITRMLITSTRSLSVSFQGET 104
            R+L    R+L+  T++  V F GET
Sbjct: 208 ERELKVGDRVLVGGTKAGVVRFLGET 233


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.123    0.344 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 54,442,808
Number of Sequences: 539616
Number of extensions: 1893962
Number of successful extensions: 8550
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 138
Number of HSP's that attempted gapping in prelim test: 7375
Number of HSP's gapped (non-prelim): 1000
length of query: 174
length of database: 191,569,459
effective HSP length: 109
effective length of query: 65
effective length of database: 132,751,315
effective search space: 8628835475
effective search space used: 8628835475
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 57 (26.6 bits)