Query 030650
Match_columns 174
No_of_seqs 49 out of 51
Neff 2.9
Searched_HMMs 46136
Date Fri Mar 29 02:31:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030650.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030650hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05395 DARPP-32: Protein pho 37.2 39 0.00085 28.7 3.2 54 120-173 30-90 (174)
2 PF07636 PSRT: PSRT; InterPro 12.7 90 0.0019 20.1 0.5 10 115-124 14-23 (32)
3 COG1454 EutG Alcohol dehydroge 12.2 1.4E+02 0.003 27.6 1.8 19 155-173 355-373 (377)
4 cd08171 GlyDH-like2 Glycerol d 12.1 1.3E+02 0.0028 26.2 1.5 19 156-174 325-343 (345)
5 PF03835 Rad4: Rad4 transgluta 11.5 69 0.0015 24.8 -0.3 20 2-27 79-98 (145)
6 cd08181 PPD-like 1,3-propanedi 11.0 2.4E+02 0.0051 24.8 2.8 18 156-173 339-356 (357)
7 PRK09860 putative alcohol dehy 10.8 2.4E+02 0.0051 25.2 2.7 23 151-173 356-379 (383)
8 cd08189 Fe-ADH5 Iron-containin 10.5 2.6E+02 0.0055 24.7 2.8 23 151-173 350-374 (374)
9 cd08182 HEPD Hydroxyethylphosp 10.3 2.5E+02 0.0055 24.5 2.7 19 155-173 348-366 (367)
10 cd08185 Fe-ADH1 Iron-containin 10.1 2.7E+02 0.0059 24.5 2.8 23 151-173 354-379 (380)
No 1
>PF05395 DARPP-32: Protein phosphatase inhibitor 1/DARPP-32; InterPro: IPR008466 This family consists of several mammalian protein phosphatase inhibitor 1 (IPP-1) and dopamine- and cAMP-regulated neuronal phosphoprotein (DARPP-32) proteins. Protein phosphatase inhibitor-1 is involved in signal transduction and is an endogenous inhibitor of protein phosphatase-1 []. It has been demonstrated that DARPP-32, if phosphorylated, can inhibit protein-phosphatase-1 []. DARPP-32 has a key role in many neurotransmitter pathways throughout the brain and has been shown to be involved in controlling receptors, ion channels and other physiological factors including the brain's response to drugs of abuse, such as cocaine, opiates and nicotine. DARPP-32 is reciprocally regulated by the two neurotransmitters that are most often implicated in schizophrenia - dopamine and glutamate. Dopamine activates DARPP-32 through the D1 receptor pathway and disables DARPP-32 through the D2 receptor. Glutamate, acting through the N-methyl-d-aspartate receptor, renders DARPP-32 inactive. A mutant form of DARPP-32 has been linked with gastric cancers [].; GO: 0004864 protein phosphatase inhibitor activity, 0007165 signal transduction
Probab=37.19 E-value=39 Score=28.73 Aligned_cols=54 Identities=28% Similarity=0.400 Sum_probs=42.5
Q ss_pred CCCCCCC-----CCCCCCC--CCCCCCccccccchhHHHHHhhhcCCCCCcCcHHHHHhhc
Q 030650 120 TRRGTPV-----RDQPWPG--RTQQGNPICQGCWILVLRRRLNSMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 120 RrR~sP~-----sDqRWP~--~~~~~nsl~~g~~~~v~r~~~nsm~~~~~~~~~~~~~~~~ 173 (174)
|||+||- +||-=|. ..+.+|.+-.|.+...-+-+.|+..++|-..-...|+|..
T Consensus 30 rRRPTPAtLv~~sd~ssp~~ded~~p~q~~~~~~~~~~~qR~~~~ytpPtmK~vQ~mve~H 90 (174)
T PF05395_consen 30 RRRPTPATLVILSDQSSPEIDEDRSPHQLLKGENQMSPRQRKQSVYTPPTMKAVQRMVEHH 90 (174)
T ss_pred hcCCCCceeEEecCCCCCccccccCcccccccccccChhhcccccccCcccchhHHHHHhh
Confidence 7778875 8887773 3467778888889899999999999999888777777653
No 2
>PF07636 PSRT: PSRT; InterPro: IPR011504 This motif is found at the N terminus of several short hypothetical proteins in Rhodopirellula baltica and the predicted Arylsulphatase B (3.1.6.12 from EC) Q7UX97 from SWISSPROT.
Probab=12.70 E-value=90 Score=20.13 Aligned_cols=10 Identities=60% Similarity=0.843 Sum_probs=8.2
Q ss_pred CCCCCCCCCC
Q 030650 115 KATPETRRGT 124 (174)
Q Consensus 115 k~TPERrR~s 124 (174)
.-||||||.+
T Consensus 14 SRTpeRrrS~ 23 (32)
T PF07636_consen 14 SRTPERRRST 23 (32)
T ss_pred CCCccccccc
Confidence 7899999944
No 3
>COG1454 EutG Alcohol dehydrogenase, class IV [Energy production and conversion]
Probab=12.20 E-value=1.4e+02 Score=27.63 Aligned_cols=19 Identities=42% Similarity=0.688 Sum_probs=16.8
Q ss_pred hhcCCCCCcCcHHHHHhhc
Q 030650 155 NSMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 155 nsm~~~~~~~~~~~~~~~~ 173 (174)
.-+.+|||.-++||+++.|
T Consensus 355 ~~~~~NPr~~t~ed~~~i~ 373 (377)
T COG1454 355 PCTATNPRPPTREDIKEIY 373 (377)
T ss_pred cccCCCCCCCCHHHHHHHH
Confidence 4678999999999999987
No 4
>cd08171 GlyDH-like2 Glycerol dehydrogenase-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=12.10 E-value=1.3e+02 Score=26.25 Aligned_cols=19 Identities=32% Similarity=0.364 Sum_probs=16.2
Q ss_pred hcCCCCCcCcHHHHHhhcC
Q 030650 156 SMRTPPRTRTKEELKEAYI 174 (174)
Q Consensus 156 sm~~~~~~~~~~~~~~~~~ 174 (174)
.|.+||+.-|+|+++++|.
T Consensus 325 ~~~~~p~~~t~e~i~~~~~ 343 (345)
T cd08171 325 DLKHVPYPVTKEMIAEAIK 343 (345)
T ss_pred hHhhCCCCCCHHHHHHHHH
Confidence 4567999999999999874
No 5
>PF03835 Rad4: Rad4 transglutaminase-like domain; InterPro: IPR018325 RAD4/Xp-C proteins contain an ancient transglutaminase fold that is also found in peptide-N-glycanases (PNGases), which remove glycans from glycoproteins during their degradation. The PNGases retain the catalytic triad that is typical of this fold and are predicted to have a reaction mechanism similar to that involved in transglutamination. In contrast, the RAD4/Xp-C proteins are predicted to be inactive and are likely to only possess the interaction function in DNA repair []. ; GO: 0003684 damaged DNA binding, 0006289 nucleotide-excision repair, 0005634 nucleus; PDB: 2QSG_A 2QSF_A 2QSH_A 1X3W_A 1X3Z_A 3ESW_A.
Probab=11.52 E-value=69 Score=24.76 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=12.5
Q ss_pred eeecCCCCCCCCCCCCccccccccCC
Q 030650 2 VVAISEENPRTRKPKGRFVSSRYLSP 27 (174)
Q Consensus 2 ~~a~se~N~~~Rrpr~ReVsSRYls~ 27 (174)
|||.++.+. .++|+.||...
T Consensus 79 ViA~d~~~~------~kDVT~RY~~~ 98 (145)
T PF03835_consen 79 VIAFDNDGY------AKDVTRRYASN 98 (145)
T ss_dssp EEEE-CTTE------EEE-HHHH-T-
T ss_pred EEEEeCCCC------EEEchHhhccc
Confidence 788876653 49999999974
No 6
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=11.05 E-value=2.4e+02 Score=24.83 Aligned_cols=18 Identities=22% Similarity=0.488 Sum_probs=16.0
Q ss_pred hcCCCCCcCcHHHHHhhc
Q 030650 156 SMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 156 sm~~~~~~~~~~~~~~~~ 173 (174)
.|.+||+.-++|++++.|
T Consensus 339 ~~~~nP~~~t~~~i~~il 356 (357)
T cd08181 339 HKANTPGEVTEEDIRNIY 356 (357)
T ss_pred CcCCCCCCCCHHHHHHHh
Confidence 467899999999999987
No 7
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=10.82 E-value=2.4e+02 Score=25.25 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=18.1
Q ss_pred HHHhh-hcCCCCCcCcHHHHHhhc
Q 030650 151 RRRLN-SMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 151 r~~~n-sm~~~~~~~~~~~~~~~~ 173 (174)
.++++ .+.+||+.-++||+++.|
T Consensus 356 ~a~~~~~~~~np~~~t~~~i~~il 379 (383)
T PRK09860 356 NALKDACGFTNPIQATHEEIVAIY 379 (383)
T ss_pred HHHhCcccCCCCCCCCHHHHHHHH
Confidence 45555 567899999999998866
No 8
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=10.48 E-value=2.6e+02 Score=24.72 Aligned_cols=23 Identities=17% Similarity=0.265 Sum_probs=18.2
Q ss_pred HHHhh--hcCCCCCcCcHHHHHhhc
Q 030650 151 RRRLN--SMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 151 r~~~n--sm~~~~~~~~~~~~~~~~ 173 (174)
.++++ .|.+||+.-++|++++.|
T Consensus 350 ~a~~~~~~~~~~p~~~~~e~i~~i~ 374 (374)
T cd08189 350 RALKEANPLYPVPKLMDREECEQIL 374 (374)
T ss_pred HHHhccccCCCCCCCCCHHHHHHhC
Confidence 34555 477899999999999876
No 9
>cd08182 HEPD Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP). Hydroxyethylphosphoate dehydrogenase (HEPD) catalyzes the reduction of phosphonoacetaldehyde (PnAA) to hydroxyethylphosphoate (HEP) with either NADH or NADPH as a cofactor. NADH is the preferred cofactor. PnAA is a biosynthetic intermediate for several phosphonates such as the antibiotic fosfomycin, phosphinothricin tripeptide (PTT), and 2-aminoethylphosphonate (AEP). This enzyme is named PhpC in PTT biosynthesis pathway in Streptomyces hygroscopicus and S. viridochromogenes. Members of this family are only found in bacteria.
Probab=10.25 E-value=2.5e+02 Score=24.54 Aligned_cols=19 Identities=11% Similarity=0.256 Sum_probs=16.7
Q ss_pred hhcCCCCCcCcHHHHHhhc
Q 030650 155 NSMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 155 nsm~~~~~~~~~~~~~~~~ 173 (174)
+.|.+||+.-++||+++.|
T Consensus 348 ~~~~~~p~~~t~e~i~~i~ 366 (367)
T cd08182 348 ERLDNNPVDLDEADLERLL 366 (367)
T ss_pred ccccCCCCCCCHHHHHHHh
Confidence 4578899999999999987
No 10
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=10.07 E-value=2.7e+02 Score=24.54 Aligned_cols=23 Identities=26% Similarity=0.475 Sum_probs=18.3
Q ss_pred HHHhh---hcCCCCCcCcHHHHHhhc
Q 030650 151 RRRLN---SMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 151 r~~~n---sm~~~~~~~~~~~~~~~~ 173 (174)
.++.+ .|.+||+.-++||+++.|
T Consensus 354 ~a~~~~~~~~~~nP~~~t~~~~~~i~ 379 (380)
T cd08185 354 NARETMGGLFEADPAELTREDIEEIY 379 (380)
T ss_pred HHHHhcccccCCCCCcCCHHHHHHHh
Confidence 45554 467899999999999987
Done!