Query 030650
Match_columns 174
No_of_seqs 49 out of 51
Neff 2.9
Searched_HMMs 29240
Date Mon Mar 25 03:22:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030650.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/030650hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iv7_A Alcohol dehydrogenase I 13.5 1.1E+02 0.0038 25.9 2.8 23 151-173 324-346 (364)
2 4iej_A DNA methyltransferase 1 12.7 84 0.0029 23.0 1.5 14 160-173 63-76 (93)
3 1vlj_A NADH-dependent butanol 12.1 1.4E+02 0.0047 25.3 2.9 18 156-173 385-402 (407)
4 3uhj_A Probable glycerol dehyd 11.9 1E+02 0.0036 26.3 2.1 23 151-173 352-376 (387)
5 3b09_A Peptidyl-prolyl CIS-tra 9.8 2E+02 0.007 20.1 2.7 25 149-173 57-81 (88)
6 3bfj_A 1,3-propanediol oxidore 9.2 2.1E+02 0.0072 23.8 3.0 23 151-173 360-383 (387)
7 2lvl_A SPAI; lantibiotic SELF- 8.9 86 0.0029 24.2 0.4 11 164-174 68-78 (128)
8 3f2e_A SIRV coat protein; four 7.7 50 0.0017 24.6 -1.3 14 142-155 32-45 (100)
9 1oj7_A Hypothetical oxidoreduc 7.6 2.6E+02 0.0089 23.6 2.9 25 149-173 378-404 (408)
10 3ox4_A Alcohol dehydrogenase 2 7.3 1.9E+02 0.0064 24.4 1.9 19 155-173 361-379 (383)
No 1
>3iv7_A Alcohol dehydrogenase IV; NP_602249.1, iron-containing alcohol dehydrogenase, structur genomics, joint center for structural genomics; HET: MSE; 2.07A {Corynebacterium glutamicum}
Probab=13.54 E-value=1.1e+02 Score=25.91 Aligned_cols=23 Identities=22% Similarity=0.184 Sum_probs=18.9
Q ss_pred HHHhhhcCCCCCcCcHHHHHhhc
Q 030650 151 RRRLNSMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 151 r~~~nsm~~~~~~~~~~~~~~~~ 173 (174)
.++.+.+.+||+.-++||+++.|
T Consensus 324 ~a~~~~~~~np~~~t~~di~~il 346 (364)
T 3iv7_A 324 VTLEKVPANNPRPVTRENLSRLL 346 (364)
T ss_dssp HHHTTSCTTCSSCCCHHHHHHHH
T ss_pred HHHhhcccCCCCCCCHHHHHHHH
Confidence 44556688999999999999876
No 2
>4iej_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin regulator, repressor, structural joint center for structural genomics; HET: DNA; 1.45A {Homo sapiens} PDB: 3hm5_A*
Probab=12.70 E-value=84 Score=23.03 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=11.5
Q ss_pred CCCcCcHHHHHhhc
Q 030650 160 PPRTRTKEELKEAY 173 (174)
Q Consensus 160 ~~~~~~~~~~~~~~ 173 (174)
+...||.|+|||-|
T Consensus 63 ~~~~RtvEdLK~RY 76 (93)
T 4iej_A 63 QFKKRSVEDLKERY 76 (93)
T ss_dssp TSCCCCHHHHHHHH
T ss_pred CCCCCCHHHHHHHH
Confidence 34579999999987
No 3
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=12.11 E-value=1.4e+02 Score=25.32 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=15.7
Q ss_pred hcCCCCCcCcHHHHHhhc
Q 030650 156 SMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 156 sm~~~~~~~~~~~~~~~~ 173 (174)
.+.+||+.-++|++++.|
T Consensus 385 ~~~~np~~~t~e~i~~i~ 402 (407)
T 1vlj_A 385 ASLGRIMVLEREDVREIL 402 (407)
T ss_dssp CCSCSSSCCCHHHHHHHH
T ss_pred cccCCCCCCCHHHHHHHH
Confidence 567899999999998876
No 4
>3uhj_A Probable glycerol dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.34A {Sinorhizobium meliloti}
Probab=11.92 E-value=1e+02 Score=26.33 Aligned_cols=23 Identities=17% Similarity=0.118 Sum_probs=17.8
Q ss_pred HHHhh--hcCCCCCcCcHHHHHhhc
Q 030650 151 RRRLN--SMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 151 r~~~n--sm~~~~~~~~~~~~~~~~ 173 (174)
.++++ .|.+||+.-|+||++++|
T Consensus 352 ~a~~~~~~~~n~P~~~t~e~i~~il 376 (387)
T 3uhj_A 352 AACRPGNIIYATPVTITVPAVRDAI 376 (387)
T ss_dssp HHTSTTCGGGGSSSCCCHHHHHHHH
T ss_pred HHHcccchhhcCCCCCCHHHHHHHH
Confidence 34443 367889999999999987
No 5
>3b09_A Peptidyl-prolyl CIS-trans isomerase; Val-Leu zipper, helices, chaperone; 1.90A {Shewanella}
Probab=9.80 E-value=2e+02 Score=20.08 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=19.8
Q ss_pred HHHHHhhhcCCCCCcCcHHHHHhhc
Q 030650 149 VLRRRLNSMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 149 v~r~~~nsm~~~~~~~~~~~~~~~~ 173 (174)
|+..|++.+...+-..+.||+.+++
T Consensus 57 v~~Gl~Dal~Gk~~~ls~eei~~~l 81 (88)
T 3b09_A 57 VQAGLADAFAGKESAVSMEELQVAF 81 (88)
T ss_dssp HHHHHHHHHTTCCCSSCHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 7788888888887777888887653
No 6
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=9.18 E-value=2.1e+02 Score=23.83 Aligned_cols=23 Identities=13% Similarity=0.267 Sum_probs=17.7
Q ss_pred HHHhh-hcCCCCCcCcHHHHHhhc
Q 030650 151 RRRLN-SMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 151 r~~~n-sm~~~~~~~~~~~~~~~~ 173 (174)
.++++ .+.+||+.-++||+++.|
T Consensus 360 ~a~~~~~~~~np~~~~~~~i~~i~ 383 (387)
T 3bfj_A 360 MALKDGNAFSNPRKGNEQEIAAIF 383 (387)
T ss_dssp HHHHSGGGTTCSSCCCHHHHHHHH
T ss_pred HHHhCccccCCCCCCCHHHHHHHH
Confidence 34443 467899999999999887
No 7
>2lvl_A SPAI; lantibiotic SELF-immunity protein, subtilin, immune system, lantibiotic-binding-protein; NMR {Bacillus subtilis}
Probab=8.86 E-value=86 Score=24.15 Aligned_cols=11 Identities=64% Similarity=0.945 Sum_probs=8.9
Q ss_pred CcHHHHHhhcC
Q 030650 164 RTKEELKEAYI 174 (174)
Q Consensus 164 ~~~~~~~~~~~ 174 (174)
-..|||||-||
T Consensus 68 wseeelkepyi 78 (128)
T 2lvl_A 68 WSEEELKEPYI 78 (128)
T ss_dssp CCHHHHSSCSS
T ss_pred cCHhHhcCCcc
Confidence 46789999887
No 8
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=7.70 E-value=50 Score=24.56 Aligned_cols=14 Identities=29% Similarity=0.147 Sum_probs=11.6
Q ss_pred ccccchhHHHHHhh
Q 030650 142 CQGCWILVLRRRLN 155 (174)
Q Consensus 142 ~~g~~~~v~r~~~n 155 (174)
-+|.|+-|+|+|..
T Consensus 32 yqgfglkvaralnr 45 (100)
T 3f2e_A 32 YQGFGLKVARALNR 45 (100)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HhhhhHHHHHHHHh
Confidence 38999999999853
No 9
>1oj7_A Hypothetical oxidoreductase YQHD; structural genomics; HET: NZQ; 2.0A {Escherichia coli} SCOP: e.22.1.2
Probab=7.57 E-value=2.6e+02 Score=23.55 Aligned_cols=25 Identities=8% Similarity=0.017 Sum_probs=19.0
Q ss_pred HHHHHhhh--cCCCCCcCcHHHHHhhc
Q 030650 149 VLRRRLNS--MRTPPRTRTKEELKEAY 173 (174)
Q Consensus 149 v~r~~~ns--m~~~~~~~~~~~~~~~~ 173 (174)
+-.++++. +.+||+.-++|++++.|
T Consensus 378 a~~a~~~~~~~~~~p~~~t~~~i~~il 404 (408)
T 1oj7_A 378 LKKLEEHGMTQLGENHDITLDVSRRIY 404 (408)
T ss_dssp HHHHHHTTCSSBTTTTCBCHHHHHHHH
T ss_pred HHHHHhccccccCCCCCCCHHHHHHHH
Confidence 44455554 47899999999999877
No 10
>3ox4_A Alcohol dehydrogenase 2; iron, NAD, oxidoreductase; HET: NAD; 2.00A {Zymomonas mobilis} PDB: 3owo_A*
Probab=7.27 E-value=1.9e+02 Score=24.43 Aligned_cols=19 Identities=26% Similarity=0.468 Sum_probs=16.4
Q ss_pred hhcCCCCCcCcHHHHHhhc
Q 030650 155 NSMRTPPRTRTKEELKEAY 173 (174)
Q Consensus 155 nsm~~~~~~~~~~~~~~~~ 173 (174)
..|.+||+.-++||+++.|
T Consensus 361 ~~~~~np~~~t~~di~~i~ 379 (383)
T 3ox4_A 361 ACALTNPRQGDQKEVEELF 379 (383)
T ss_dssp GGGGGCSSCCCHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHHH
Confidence 3578999999999999877
Done!