BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 030651
         (174 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3GZE|A Chain A, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
           (Ser-Pro)5 Peptide Substrate
 pdb|3GZE|B Chain B, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
           (Ser-Pro)5 Peptide Substrate
 pdb|3GZE|C Chain C, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
           (Ser-Pro)5 Peptide Substrate
 pdb|3GZE|D Chain D, Algal Prolyl 4-Hydroxylase Complexed With Zinc And
           (Ser-Pro)5 Peptide Substrate
          Length = 225

 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 74  EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
           E+W   V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS
Sbjct: 8   EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 67

Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLGMQFKFSLFFFY 170
           +GT+ A              A  T  PL       +  ++
Sbjct: 68  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYH 107


>pdb|2JIJ|A Chain A, Crystal Structure Of The Apo Form Of Chlamydomonas
           Reinhardtii Prolyl-4 Hydroxylase Type I
 pdb|2JIJ|B Chain B, Crystal Structure Of The Apo Form Of Chlamydomonas
           Reinhardtii Prolyl-4 Hydroxylase Type I
 pdb|2JIJ|C Chain C, Crystal Structure Of The Apo Form Of Chlamydomonas
           Reinhardtii Prolyl-4 Hydroxylase Type I
          Length = 233

 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 74  EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
           E+W   V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS
Sbjct: 16  EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 75

Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLGMQFKFSLFFFY 170
           +GT+ A              A  T  PL       +  ++
Sbjct: 76  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYH 115


>pdb|2JIG|A Chain A, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
           Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
           Dicarboxylate
 pdb|2JIG|B Chain B, Crystal Structure Of Chlamydomonas Reinhardtii Prolyl-4
           Hydroxylase Type I Complexed With Zinc And Pyridine-2,4-
           Dicarboxylate
          Length = 224

 Score = 80.9 bits (198), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 40/100 (40%), Positives = 56/100 (56%), Gaps = 3/100 (3%)

Query: 74  EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
           E+W   V  +SW PRAF+  NFLS EEC+Y++  A P M KS+VVD+++GKS DS +RTS
Sbjct: 7   EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKMVKSSVVDNESGKSVDSEIRTS 66

Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLGMQFKFSLFFFY 170
           +GT+ A              A  T  PL       +  ++
Sbjct: 67  TGTWFAKGEDSVISKIEKRVAQVTMIPLENHEGLQVLHYH 106


>pdb|2V4A|A Chain A, Crystal Structure Of The Semet-Labeled Prolyl-4
           Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
           Reinhardtii.
 pdb|2V4A|B Chain B, Crystal Structure Of The Semet-Labeled Prolyl-4
           Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
           Reinhardtii.
 pdb|2V4A|C Chain C, Crystal Structure Of The Semet-Labeled Prolyl-4
           Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
           Reinhardtii.
 pdb|2V4A|D Chain D, Crystal Structure Of The Semet-Labeled Prolyl-4
           Hydroxylase (P4h) Type I From Green Algae Chlamydomonas
           Reinhardtii
          Length = 233

 Score = 77.4 bits (189), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 55/100 (55%), Gaps = 3/100 (3%)

Query: 74  EQW---VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTS 130
           E+W   V  +SW PRAF+  NFLS EEC+Y++  A P   KS+VVD+++GKS DS +RTS
Sbjct: 16  EEWRGEVVHLSWSPRAFLLKNFLSDEECDYIVEKARPKXVKSSVVDNESGKSVDSEIRTS 75

Query: 131 SGTFLAXXXXXXXXXXXXXXADFTFFPLGMQFKFSLFFFY 170
           +GT+ A              A  T  PL       +  ++
Sbjct: 76  TGTWFAKGEDSVISKIEKRVAQVTXIPLENHEGLQVLHYH 115


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,812,843
Number of Sequences: 62578
Number of extensions: 115666
Number of successful extensions: 163
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 5
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)