Query 030651
Match_columns 174
No_of_seqs 158 out of 786
Neff 5.8
Searched_HMMs 46136
Date Fri Mar 29 02:32:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030651.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030651hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1591 Prolyl 4-hydroxylase a 100.0 1.4E-31 3.1E-36 230.5 10.2 167 8-174 10-188 (289)
2 PLN00052 prolyl 4-hydroxylase; 100.0 1.1E-30 2.3E-35 227.1 13.7 105 70-174 40-144 (310)
3 smart00702 P4Hc Prolyl 4-hydro 99.6 8.7E-16 1.9E-20 121.8 9.5 90 84-173 1-94 (178)
4 PRK05467 Fe(II)-dependent oxyg 97.2 0.0015 3.2E-08 55.1 7.1 81 86-174 2-92 (226)
5 PF13677 MotB_plug: Membrane M 72.5 11 0.00025 24.9 4.8 24 1-24 1-24 (58)
6 PHA02813 hypothetical protein; 67.5 14 0.00031 33.3 5.7 77 97-174 24-106 (354)
7 PF13532 2OG-FeII_Oxy_2: 2OG-F 65.7 45 0.00097 26.0 7.8 21 86-106 2-22 (194)
8 KOG3200 Uncharacterized conser 59.5 30 0.00065 28.8 5.8 87 79-174 7-100 (224)
9 KOG3959 2-Oxoglutarate- and ir 50.2 10 0.00022 32.9 1.7 69 83-156 71-146 (306)
10 PF03579 SHP: Small hydrophobi 47.7 29 0.00063 23.6 3.2 29 12-40 13-41 (64)
11 PHA02869 C4L/C10L-like gene fa 45.8 25 0.00053 32.5 3.5 64 108-174 44-115 (418)
12 cd08788 CARD_NOD2_2_CARD15 Cas 38.0 14 0.0003 26.7 0.5 15 89-103 25-39 (81)
13 PF07894 DUF1669: Protein of u 36.8 41 0.0009 29.5 3.4 19 89-107 47-65 (284)
14 PF15183 MRAP: Melanocortin-2 36.5 50 0.0011 24.1 3.2 21 16-36 41-61 (90)
15 PRK06489 hypothetical protein; 32.9 1.3E+02 0.0028 26.0 5.9 16 83-98 69-84 (360)
16 PRK06666 fliM flagellar motor 30.6 78 0.0017 27.6 4.2 64 90-154 3-67 (337)
17 PF05721 PhyH: Phytanoyl-CoA d 30.4 59 0.0013 24.6 3.1 21 86-106 6-26 (211)
18 PRK06925 flagellar motor prote 29.9 87 0.0019 26.0 4.2 6 1-6 1-6 (230)
19 PF08069 Ribosomal_S13_N: Ribo 28.3 40 0.00086 22.9 1.5 33 68-114 17-50 (60)
20 PF05546 She9_MDM33: She9 / Md 28.2 56 0.0012 27.5 2.7 25 12-36 148-173 (207)
21 PF15330 SIT: SHP2-interacting 27.6 48 0.001 24.8 2.0 18 24-41 4-21 (107)
22 PF08173 YbgT_YccB: Membrane b 24.1 1.6E+02 0.0034 17.1 3.3 21 17-37 4-24 (28)
23 cd01793 Fubi Fubi ubiquitin-li 23.9 69 0.0015 21.4 2.2 20 140-159 18-37 (74)
24 PF03754 DUF313: Domain of unk 23.7 53 0.0011 24.9 1.6 12 90-101 50-61 (114)
25 TIGR01397 fliM_switch flagella 23.3 1.4E+02 0.0031 25.7 4.5 61 91-153 1-62 (320)
26 KOG3551 Syntrophins (type beta 22.9 54 0.0012 30.4 1.8 23 74-96 475-498 (506)
27 PF15240 Pro-rich: Proline-ric 22.6 32 0.00069 28.3 0.3 14 31-44 2-15 (179)
28 PF12955 DUF3844: Domain of un 22.2 79 0.0017 23.7 2.3 17 23-39 70-86 (103)
29 PF01448 ELM2: ELM2 domain; I 22.2 97 0.0021 19.7 2.5 26 77-107 28-53 (55)
30 PRK15401 alpha-ketoglutarate-d 22.0 4.7E+02 0.01 21.8 7.7 32 142-173 96-127 (213)
31 PF13986 DUF4224: Domain of un 21.7 69 0.0015 20.4 1.6 16 91-106 1-16 (47)
32 COG3162 Predicted membrane pro 21.6 1E+02 0.0022 23.2 2.7 36 12-47 20-58 (102)
33 PF12729 4HB_MCP_1: Four helix 21.6 58 0.0013 23.9 1.5 7 36-42 24-30 (181)
34 cd01812 BAG1_N Ubiquitin-like 20.8 84 0.0018 20.4 2.0 21 140-160 19-39 (71)
35 TIGR02408 ectoine_ThpD ectoine 20.3 1.6E+02 0.0034 25.0 4.1 23 87-109 31-53 (277)
36 PF13544 N_methyl_2: Type IV p 20.1 1.3E+02 0.0027 17.4 2.4 16 11-26 10-25 (31)
37 cd05567 PTS_IIB_mannitol PTS_I 20.1 1.2E+02 0.0026 20.9 2.8 21 83-103 65-85 (87)
No 1
>KOG1591 consensus Prolyl 4-hydroxylase alpha subunit [Amino acid transport and metabolism]
Probab=99.97 E-value=1.4e-31 Score=230.51 Aligned_cols=167 Identities=34% Similarity=0.456 Sum_probs=129.9
Q ss_pred CCCCCCC--chHHHHHHHHHHHHHHHHHHHHhccccCCC---CCCCCCCCCCcchhhhhcccc------CCCCcCCCCce
Q 030651 8 RFPTRKS--SSSTLILTLLIMFTFAILILLAFGILSMPS---SSGDSRKANDLSSIVRKSMER------SEGDEGRAEQW 76 (174)
Q Consensus 8 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~~k 76 (174)
+...+++ +..+.++..+.....+...+..++.+..+. ...+..-..++.........+ .++|+.++|.|
T Consensus 10 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~c~g~~~~~~~~~~~~~~~~~~~~~~~~~ap~k 89 (289)
T KOG1591|consen 10 KLGILKSALSLLTEVFSILPESIRALDNLKQLEQLLDKEQEFTVYEQGCRGELPPLTKLTLRRLSCRNRAGPFLRLAPVK 89 (289)
T ss_pred eccchHhhhhhcchhhhcchhhHHHhhhhhhhhhhccccccccchhhhccCccCccchhHhhhhhcccccCcceeecchh
Confidence 4444443 234666777777777777777888887765 221111122222222211111 12899999999
Q ss_pred eEEeccCccEEEEcCCCCHHHHHHHHHHhcCCcccceee-eCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHhcC
Q 030651 77 VEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVV-DSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTF 155 (174)
Q Consensus 77 vE~LS~dP~I~lyhdfLS~eEce~Li~lakp~L~rS~Vv-~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~RIadlTG 155 (174)
+|++||+|++++|||||+++||++|+.+|+++|++++|. +..+|....+.+|+|+++|+..++++++++|++||+++||
T Consensus 90 ~E~lsw~P~~~~yhd~ls~~e~d~l~~lak~~l~~stv~~~~~~~~~~~~~~R~S~~t~l~~~~~~~~~~i~~ri~~~T~ 169 (289)
T KOG1591|consen 90 LEELSWDPRVVLYHDFLSDEECDHLISLAKPKLERSTVVADKGTGHSTTSAVRTSSGTFLPDGASPVVSRIEQRIADLTG 169 (289)
T ss_pred hhhcccCCceEeehhcCCHHHHHHHHHhhhhhhhceeeeccCCcccccceeeEecceeEecCCCCHHHHHHHHHHHhccC
Confidence 999999999999999999999999999999999999995 5555766777789999999999889999999999999999
Q ss_pred CCCCCCcceeeeeccCCCC
Q 030651 156 FPLGMQFKFSLFFFYVLKK 174 (174)
Q Consensus 156 lp~e~~E~lQVlrY~i~~~ 174 (174)
+|.+++|+|||+||++|+|
T Consensus 170 l~~e~~E~lqVlnYg~Gg~ 188 (289)
T KOG1591|consen 170 LPVENGESLQVLNYGLGGH 188 (289)
T ss_pred CCcccCccceEEEecCCcc
Confidence 9999999999999999986
No 2
>PLN00052 prolyl 4-hydroxylase; Provisional
Probab=99.97 E-value=1.1e-30 Score=227.07 Aligned_cols=105 Identities=39% Similarity=0.648 Sum_probs=99.7
Q ss_pred cCCCCceeEEeccCccEEEEcCCCCHHHHHHHHHHhcCCcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHH
Q 030651 70 EGRAEQWVEVISWEPRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKR 149 (174)
Q Consensus 70 ~~l~~~kvE~LS~dP~I~lyhdfLS~eEce~Li~lakp~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~R 149 (174)
..+.+.|+|+|||+|+|++||||||++||++||++|++++++|+|+++.+|+...++.|||+++|+.+.+++++++|++|
T Consensus 40 ~~~~~~kve~lS~~P~i~~~~nfLs~~Ecd~Li~la~~~l~~S~v~~~~~g~~~~s~~RTS~~~~l~~~~dpvv~~I~~R 119 (310)
T PLN00052 40 PPFNASRVKAVSWQPRIFVYKGFLSDAECDHLVKLAKKKIQRSMVADNKSGKSVMSEVRTSSGMFLDKRQDPVVSRIEER 119 (310)
T ss_pred CCcCCceEEEecCCCCEEEECCcCCHHHHHHHHHhcccccccceeecCCCCccccCCCEEecceeecCCCCHHHHHHHHH
Confidence 35699999999999999999999999999999999999999999998877777788999999999999889999999999
Q ss_pred HHHhcCCCCCCCcceeeeeccCCCC
Q 030651 150 IADFTFFPLGMQFKFSLFFFYVLKK 174 (174)
Q Consensus 150 IadlTGlp~e~~E~lQVlrY~i~~~ 174 (174)
|+++||+|.+++|++||+||+.||+
T Consensus 120 ia~~t~lp~~~~E~lQVlrY~~Gq~ 144 (310)
T PLN00052 120 IAAWTFLPEENAENIQILRYEHGQK 144 (310)
T ss_pred HHHHhCCCcccCcceEEEecCCCCC
Confidence 9999999999999999999999985
No 3
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues. Mammalian enzymes catalyse hydroxylation of collagen, for example. Prokaryotic enzymes might catalyse hydroxylation of antibiotic peptides. These are 2-oxoglutarate-dependent dioxygenases, requiring 2-oxoglutarate and dioxygen as cosubstrates and ferrous iron as a cofactor.
Probab=99.64 E-value=8.7e-16 Score=121.76 Aligned_cols=90 Identities=31% Similarity=0.407 Sum_probs=80.8
Q ss_pred ccEEEEcCCCCHHHHHHHHHHhcCCcccceeeeCCCCCccccceeeeeeeeeCCCC-cHHHHHHHHHHHHhcCCC---CC
Q 030651 84 PRAFVYHNFLSKEECEYLINLATPHMRKSTVVDSDTGKSKDSRVRTSSGTFLARGR-DKIIRDIEKRIADFTFFP---LG 159 (174)
Q Consensus 84 P~I~lyhdfLS~eEce~Li~lakp~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~~~-~~vv~rI~~RIadlTGlp---~e 159 (174)
|.|++||||||++||++|++++++...++.+.++.++....+++|+|+.+|+...+ ++++++|.+||+++++++ ..
T Consensus 1 P~i~~~~~~ls~~ec~~li~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~l~~~~~~~~~~~l~~~i~~~~~~~~~~~~ 80 (178)
T smart00702 1 PGVVVFHDFLSPAECQKLLEEAEPLGWRGEVTRGDTNPNHDSKYRQSNGTWLELLKGDLVIERIRQRLADFLGLLRGLPL 80 (178)
T ss_pred CcEEEECCCCCHHHHHHHHHHhhhhcccceeecCCCCccccCCCEeecceecCCCCCCHHHHHHHHHHHHHHCCCchhhc
Confidence 89999999999999999999999988888887664333256789999999999875 899999999999999998 78
Q ss_pred CCcceeeeeccCCC
Q 030651 160 MQFKFSLFFFYVLK 173 (174)
Q Consensus 160 ~~E~lQVlrY~i~~ 173 (174)
+.|.+|+++|+.|+
T Consensus 81 ~~~~~~~~~Y~~g~ 94 (178)
T smart00702 81 SAEDAQVARYGPGG 94 (178)
T ss_pred cCcceEEEEECCCC
Confidence 99999999999986
No 4
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional
Probab=97.15 E-value=0.0015 Score=55.11 Aligned_cols=81 Identities=14% Similarity=0.103 Sum_probs=52.9
Q ss_pred EEEEcCCCCHHHHHHHHHHhcC-CcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHhc---------C
Q 030651 86 AFVYHNFLSKEECEYLINLATP-HMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFT---------F 155 (174)
Q Consensus 86 I~lyhdfLS~eEce~Li~lakp-~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~RIadlT---------G 155 (174)
|+.++||||++||+++++.... .+....+. .......+|..... .. +++..+.|.+||.... +
T Consensus 2 i~~I~~vLs~eec~~~~~~le~~~~~dg~~t----aG~~~~~vKnN~ql--~~-d~~~a~~l~~~i~~~L~~~~l~~sa~ 74 (226)
T PRK05467 2 LLHIPDVLSPEEVAQIRELLDAAEWVDGRVT----AGAQAAQVKNNQQL--PE-DSPLARELGNLILDALTRNPLFFSAA 74 (226)
T ss_pred eeeecccCCHHHHHHHHHHHHhcCCccCCcC----cCccchhccccccc--CC-CCHHHHHHHHHHHHHHhcCchhhhhc
Confidence 6789999999999999987753 34333332 12223345554443 33 4678888888887654 3
Q ss_pred CCCCCCcceeeeeccCCCC
Q 030651 156 FPLGMQFKFSLFFFYVLKK 174 (174)
Q Consensus 156 lp~e~~E~lQVlrY~i~~~ 174 (174)
+|. ..+++.+.+|..|+.
T Consensus 75 lp~-~i~~~~f~rY~~G~~ 92 (226)
T PRK05467 75 LPR-KIHPPLFNRYEGGMS 92 (226)
T ss_pred ccc-ccccceEEEECCCCc
Confidence 333 345788999999974
No 5
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=72.49 E-value=11 Score=24.94 Aligned_cols=24 Identities=21% Similarity=0.069 Sum_probs=11.8
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHH
Q 030651 1 MAKPRYSRFPTRKSSSSTLILTLL 24 (174)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~ 24 (174)
|+|.|..+-.......|.+.++=|
T Consensus 1 Makkk~~~~~~~~~~~WlvtyaDl 24 (58)
T PF13677_consen 1 MAKKKKKEEEEEGSPRWLVTYADL 24 (58)
T ss_pred CCCCCCCCCCCCCCccHHHHHHHH
Confidence 777776333333444454444433
No 6
>PHA02813 hypothetical protein; Provisional
Probab=67.52 E-value=14 Score=33.27 Aligned_cols=77 Identities=17% Similarity=0.184 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCcccceeeeCCCCCc-cccceeeeeeeeeCCCCcHHHHHHHHHHH-HhcCCC----CCCCcceeeeecc
Q 030651 97 ECEYLINLATPHMRKSTVVDSDTGKS-KDSRVRTSSGTFLARGRDKIIRDIEKRIA-DFTFFP----LGMQFKFSLFFFY 170 (174)
Q Consensus 97 Ece~Li~lakp~L~rS~Vv~~~tG~~-~~s~~RTS~~awL~~~~~~vv~rI~~RIa-dlTGlp----~e~~E~lQVlrY~ 170 (174)
++-.+++.-.-.+..|.+.+..+|.. ...+.|+++.+-++.. +.+..+|.+-+- ++.|.+ +.-.|.+...+|.
T Consensus 24 ~l~~~i~~~d~~~~~s~i~~~~~~ge~l~~~iRnNkrviid~~-~~L~erIr~~Lp~~l~~~~lv~~V~vnerirfyrY~ 102 (354)
T PHA02813 24 IIMDMIKYKDIIWEESKVFDHEKGGEVINTNERQCKQYIIRGL-DDIFKVIRKKLLLSFEFPQKISDIILDNTITLIKYE 102 (354)
T ss_pred HHHHHHhccccCccccceeccccCceEEccccccceEEEEcCH-HHHHHHHHHhhHHHhcCCccceeEEEcceEEEEEEC
Confidence 33334443344578899998666643 3577999999988754 455555555555 344544 3558899999999
Q ss_pred CCCC
Q 030651 171 VLKK 174 (174)
Q Consensus 171 i~~~ 174 (174)
.||+
T Consensus 103 kGq~ 106 (354)
T PHA02813 103 KGDF 106 (354)
T ss_pred CCcc
Confidence 9984
No 7
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A ....
Probab=65.73 E-value=45 Score=26.04 Aligned_cols=21 Identities=38% Similarity=0.487 Sum_probs=17.2
Q ss_pred EEEEcCCCCHHHHHHHHHHhc
Q 030651 86 AFVYHNFLSKEECEYLINLAT 106 (174)
Q Consensus 86 I~lyhdfLS~eEce~Li~lak 106 (174)
+++++||||++|...|++...
T Consensus 2 ~~~~~~fls~~e~~~l~~~l~ 22 (194)
T PF13532_consen 2 LYYIPNFLSEEEAAELLNELR 22 (194)
T ss_dssp EEEETTSS-HHHHHHHHHHHH
T ss_pred EEEECCCCCHHHHHHHHHHHH
Confidence 578999999999999887664
No 8
>KOG3200 consensus Uncharacterized conserved protein [Function unknown]
Probab=59.48 E-value=30 Score=28.78 Aligned_cols=87 Identities=11% Similarity=0.179 Sum_probs=51.3
Q ss_pred EeccCccEEEEcCCCCHHHHHHHHHHh----cCCccc---ceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHH
Q 030651 79 VISWEPRAFVYHNFLSKEECEYLINLA----TPHMRK---STVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIA 151 (174)
Q Consensus 79 ~LS~dP~I~lyhdfLS~eEce~Li~la----kp~L~r---S~Vv~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~RIa 151 (174)
++-..|.+++++|||++||-..+..-. +|+++- -...+. |+ . .....-+++.--+..+++...|.
T Consensus 7 ~V~~~pt~~YIPnfIt~EEe~~~lshIe~ap~pkW~~L~NRRLqNy--GG-v-----vh~~glipeelP~wLq~~v~kin 78 (224)
T KOG3200|consen 7 IVKSAPTMIYIPNFITEEEENLYLSHIENAPQPKWRVLANRRLQNY--GG-V-----VHKTGLIPEELPPWLQYYVDKIN 78 (224)
T ss_pred EecccceEEEcCCccChHHHHHHHHHHhcCCCchhHHHHhhhhhhc--CC-c-----cccCCcCccccCHHHHHHHHHhh
Confidence 345678999999999999987765433 333211 111111 11 1 11223344444566778877777
Q ss_pred HhcCCCCCCCcceeeeeccCCCC
Q 030651 152 DFTFFPLGMQFKFSLFFFYVLKK 174 (174)
Q Consensus 152 dlTGlp~e~~E~lQVlrY~i~~~ 174 (174)
++-=++ ..+...-|-.|..||.
T Consensus 79 nlglF~-s~~NHVLVNeY~pgqG 100 (224)
T KOG3200|consen 79 NLGLFK-SPANHVLVNEYLPGQG 100 (224)
T ss_pred cccccC-CCcceeEeecccCCCC
Confidence 544344 3677777888888873
No 9
>KOG3959 consensus 2-Oxoglutarate- and iron-dependent dioxygenase-related proteins [General function prediction only]
Probab=50.18 E-value=10 Score=32.85 Aligned_cols=69 Identities=17% Similarity=0.256 Sum_probs=41.9
Q ss_pred CccEEEEcCCCCHHHHHHHHHHhcC-Ccccc------eeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHhcC
Q 030651 83 EPRAFVYHNFLSKEECEYLINLATP-HMRKS------TVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFTF 155 (174)
Q Consensus 83 dP~I~lyhdfLS~eEce~Li~lakp-~L~rS------~Vv~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~RIadlTG 155 (174)
=|-|.++|||||.+|=+.|+++-.. -+.-| .-+++++ ++...+.||-..+=+++ ...-+-+|+.+..+
T Consensus 71 ~pG~~lie~Fls~~Eea~l~~~~D~~pW~~SQSGRRKQdyGPKv-NFkk~Klkt~~F~G~P~----~~~~v~rrm~~yp~ 145 (306)
T KOG3959|consen 71 IPGLTLIENFLSESEEAKLLNMIDTVPWAQSQSGRRKQDYGPKV-NFKKKKLKTDTFVGMPE----YADMVLRRMSEYPV 145 (306)
T ss_pred cCCeeehhhhhccchHhHHHHHhccCchhhhcccccccccCCcc-chhhhhhccCcccCCch----HHHHHHHHhhccch
Confidence 3889999999999999999988752 11111 2223322 23344566655554444 45566667776654
Q ss_pred C
Q 030651 156 F 156 (174)
Q Consensus 156 l 156 (174)
+
T Consensus 146 l 146 (306)
T KOG3959|consen 146 L 146 (306)
T ss_pred h
Confidence 4
No 10
>PF03579 SHP: Small hydrophobic protein; InterPro: IPR005327 The small hydrophobic integral membrane protein, SH (previously designated 1A) is found to have a variety of glycosylated forms [, ]. This protein is a component of the mature respiratory syncytial virion [] where it may form complexes and appears to play a structural role.; GO: 0016020 membrane, 0016021 integral to membrane, 0048222 glycoprotein network
Probab=47.69 E-value=29 Score=23.62 Aligned_cols=29 Identities=28% Similarity=0.257 Sum_probs=22.6
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHHhccc
Q 030651 12 RKSSSSTLILTLLIMFTFAILILLAFGIL 40 (174)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 40 (174)
+-|.-+||++.++.+.+|+|++-+..+||
T Consensus 13 kFW~YFtLi~M~lti~~~~Iv~si~~AIL 41 (64)
T PF03579_consen 13 KFWTYFTLIFMMLTIGFFFIVTSIMAAIL 41 (64)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677799999998888888877766664
No 11
>PHA02869 C4L/C10L-like gene family protein; Provisional
Probab=45.79 E-value=25 Score=32.46 Aligned_cols=64 Identities=9% Similarity=0.112 Sum_probs=45.4
Q ss_pred CcccceeeeCCCCC-ccccceeeeeeeeeCCCCcHHHHHHHHHHHH-----hcCC--CCCCCcceeeeeccCCCC
Q 030651 108 HMRKSTVVDSDTGK-SKDSRVRTSSGTFLARGRDKIIRDIEKRIAD-----FTFF--PLGMQFKFSLFFFYVLKK 174 (174)
Q Consensus 108 ~L~rS~Vv~~~tG~-~~~s~~RTS~~awL~~~~~~vv~rI~~RIad-----lTGl--p~e~~E~lQVlrY~i~~~ 174 (174)
....|.+.+..+|. ......|+|++.-+.. .....|.+||+. +-|+ .+.-.|.+...+|..||.
T Consensus 44 ~~~~s~i~~~~~g~e~~~~~~~ksKqii~e~---~La~~L~erlr~lLp~~lk~~v~~V~lnerirfyrY~kGq~ 115 (418)
T PHA02869 44 ICEDSKIFFPEKRTELLSIKDRKSKQIVFEN---SLNDDLLKKLHALIYDELSTVVDSVTVENTVTLIMYEKGDY 115 (418)
T ss_pred ccccceeeccccCceeEeeccccceeEEech---HHHHHHHHHHHHhhhHHhhCccceEEEcceEEEEEECCCCc
Confidence 45889999877773 3456679999998864 345555555553 4454 446689999999999984
No 12
>cd08788 CARD_NOD2_2_CARD15 Caspase activation and recruitment domain of NOD2, repeat 2. Caspase activation and recruitment domain (CARD) similar to that found in human NOD2 (CARD15), repeat 2. NOD2 is a member of the Nod-like receptor (NLR) family, which plays a central role in the innate immune response. NLRs typically contain an N-terminal effector domain, a central nucleotide-binding domain and a C-terminal ligand-binding region of several leucine-rich repeats (LRRs). In NOD2, as well as NOD1, the N-terminal effector domain is a CARD. NOD2 contains two N-terminal CARD repeats. Mutations in NOD2 have been associated with Crohns disease and Blau syndrome. Nod2-CARDs have been shown to interact with the CARD domain of the downstream effector RICK (RIP2, CARDIAK), a serine/threonine kinase. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are pr
Probab=38.04 E-value=14 Score=26.66 Aligned_cols=15 Identities=20% Similarity=0.430 Sum_probs=12.9
Q ss_pred EcCCCCHHHHHHHHH
Q 030651 89 YHNFLSKEECEYLIN 103 (174)
Q Consensus 89 yhdfLS~eEce~Li~ 103 (174)
=++|+|++||+.+..
T Consensus 25 ~~G~is~~Ecd~Ir~ 39 (81)
T cd08788 25 TRGFFSSYDCDEIRL 39 (81)
T ss_pred HcCCccHhhcchhhc
Confidence 478999999999875
No 13
>PF07894 DUF1669: Protein of unknown function (DUF1669); InterPro: IPR012461 This family is composed of sequences derived from hypothetical eukaryotic proteins of unknown function. Some members of this family are annotated as being potential phospholipases but no literature was found to support this.
Probab=36.80 E-value=41 Score=29.48 Aligned_cols=19 Identities=37% Similarity=0.599 Sum_probs=17.0
Q ss_pred EcCCCCHHHHHHHHHHhcC
Q 030651 89 YHNFLSKEECEYLINLATP 107 (174)
Q Consensus 89 yhdfLS~eEce~Li~lakp 107 (174)
..||||++|+++|.+.++.
T Consensus 47 ~~~FLS~~Ei~~I~~~~~~ 65 (284)
T PF07894_consen 47 ERDFLSSEEIQYILENAED 65 (284)
T ss_pred CCCCCCHHHHHHHHHhccC
Confidence 5799999999999999864
No 14
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=36.53 E-value=50 Score=24.09 Aligned_cols=21 Identities=24% Similarity=0.494 Sum_probs=14.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 030651 16 SSTLILTLLIMFTFAILILLA 36 (174)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~ 36 (174)
.+-+.|++|+++.|+||+++.
T Consensus 41 ~FWv~LA~FV~~lF~iL~~ms 61 (90)
T PF15183_consen 41 AFWVSLAAFVVFLFLILLYMS 61 (90)
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 345667778787777777764
No 15
>PRK06489 hypothetical protein; Provisional
Probab=32.92 E-value=1.3e+02 Score=26.01 Aligned_cols=16 Identities=13% Similarity=0.158 Sum_probs=13.5
Q ss_pred CccEEEEcCCCCHHHH
Q 030651 83 EPRAFVYHNFLSKEEC 98 (174)
Q Consensus 83 dP~I~lyhdfLS~eEc 98 (174)
.|.|+++|++..+.++
T Consensus 69 gpplvllHG~~~~~~~ 84 (360)
T PRK06489 69 DNAVLVLHGTGGSGKS 84 (360)
T ss_pred CCeEEEeCCCCCchhh
Confidence 5889999999987665
No 16
>PRK06666 fliM flagellar motor switch protein FliM; Validated
Probab=30.63 E-value=78 Score=27.55 Aligned_cols=64 Identities=17% Similarity=0.218 Sum_probs=33.5
Q ss_pred cCCCCHHHHHHHHHHhcC-CcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHhc
Q 030651 90 HNFLSKEECEYLINLATP-HMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADFT 154 (174)
Q Consensus 90 hdfLS~eEce~Li~lakp-~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~RIadlT 154 (174)
.++||.+|++.|.+-... ....+..... ........|.-....-+..+.-+....|++|.++..
T Consensus 3 ~~~LSQ~EIdaLL~~~~~g~~~~~~~~~~-~~~~~~~~ydf~~~~~~~~~~l~~L~~i~e~far~~ 67 (337)
T PRK06666 3 DDILSQEEIDALLSGVSDGEVDDEELKEE-GDEKKVRPYDFKRQERFSRERLRSLEIINERFARLL 67 (337)
T ss_pred ccccCHHHHHHHHhccccCCcCccccccc-cccCCcccCCCCCccccccccchHHHHHHHHHHHHH
Confidence 479999999999864332 1111110000 011112233333434455556678888888877543
No 17
>PF05721 PhyH: Phytanoyl-CoA dioxygenase (PhyH); InterPro: IPR008775 This family is made up of several eukaryotic phytanoyl-CoA dioxygenase (PhyH) proteins as well as a number of bacterial deoxygenases. PhyH is a peroxisomal enzyme catalysing the first step of phytanic acid alpha-oxidation. PhyH deficiency causes Refsum's disease (RD) which is an inherited neurological syndrome biochemically characterised by the accumulation of phytanic acid in plasma and tissues [].; PDB: 3GJA_A 3EMR_A 3OBZ_A 2OPW_A 3NNL_B 3NNF_A 3NNM_B 3NNJ_A 2FCV_B 2FCU_A ....
Probab=30.40 E-value=59 Score=24.60 Aligned_cols=21 Identities=38% Similarity=0.290 Sum_probs=16.6
Q ss_pred EEEEcCCCCHHHHHHHHHHhc
Q 030651 86 AFVYHNFLSKEECEYLINLAT 106 (174)
Q Consensus 86 I~lyhdfLS~eEce~Li~lak 106 (174)
.+++.||++++||+.|.+...
T Consensus 6 yvvi~~~l~~~~~~~l~~~~~ 26 (211)
T PF05721_consen 6 YVVIRNVLSPEEVERLREELD 26 (211)
T ss_dssp EEEETTSS-HHHHHHHHHHHH
T ss_pred EEEECCcCCHHHHHHHHHHHH
Confidence 368999999999999976664
No 18
>PRK06925 flagellar motor protein MotS; Reviewed
Probab=29.91 E-value=87 Score=25.99 Aligned_cols=6 Identities=17% Similarity=0.390 Sum_probs=4.2
Q ss_pred CCCCCC
Q 030651 1 MAKPRY 6 (174)
Q Consensus 1 ~~~~~~ 6 (174)
|+|.|+
T Consensus 1 M~~k~~ 6 (230)
T PRK06925 1 MERRKR 6 (230)
T ss_pred CCCCcc
Confidence 777765
No 19
>PF08069 Ribosomal_S13_N: Ribosomal S13/S15 N-terminal domain; InterPro: IPR012606 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This domain is found at the N terminus of ribosomal S13 and S15 proteins. This domain is also identified as NUC021 [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 3U5C_N 3O30_G 3IZB_O 3O2Z_G 3U5G_N 2XZN_O 2XZM_O 3IZ6_O.
Probab=28.30 E-value=40 Score=22.90 Aligned_cols=33 Identities=24% Similarity=0.407 Sum_probs=19.7
Q ss_pred CCcCCCCceeEEeccCccEEEEcCCCCHHHHHH-HHHHhcCCccccee
Q 030651 68 GDEGRAEQWVEVISWEPRAFVYHNFLSKEECEY-LINLATPHMRKSTV 114 (174)
Q Consensus 68 ~~~~l~~~kvE~LS~dP~I~lyhdfLS~eEce~-Li~lakp~L~rS~V 114 (174)
|+-+..|-|++ ++.+|++. ++++|+..+.+|.+
T Consensus 17 P~~~~~P~W~~--------------~~~~eVe~~I~klakkG~tpSqI 50 (60)
T PF08069_consen 17 PYRRSPPSWLK--------------YSPEEVEELIVKLAKKGLTPSQI 50 (60)
T ss_dssp -S-SS--TT----------------S-HHHHHHHHHHHCCTTHCHHHH
T ss_pred CCCCCCCCCcC--------------CCHHHHHHHHHHHHHcCCCHHHh
Confidence 45555666654 57888876 56999999988764
No 20
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=28.16 E-value=56 Score=27.45 Aligned_cols=25 Identities=28% Similarity=0.273 Sum_probs=16.8
Q ss_pred CCCchH-HHHHHHHHHHHHHHHHHHH
Q 030651 12 RKSSSS-TLILTLLIMFTFAILILLA 36 (174)
Q Consensus 12 ~~~~~~-~~~~~~~~~~~~~~~~~l~ 36 (174)
|..|+| |++|..+-++.|+++.++.
T Consensus 148 Rr~STwgT~~lmgvNvllFl~~~~~~ 173 (207)
T PF05546_consen 148 RRASTWGTWGLMGVNVLLFLVAQLLV 173 (207)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445666 7777777777777776653
No 21
>PF15330 SIT: SHP2-interacting transmembrane adaptor protein, SIT
Probab=27.57 E-value=48 Score=24.81 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHhcccc
Q 030651 24 LIMFTFAILILLAFGILS 41 (174)
Q Consensus 24 ~~~~~~~~~~~l~~~~~~ 41 (174)
+.++++++||++++-++.
T Consensus 4 l~il~llLll~l~asl~~ 21 (107)
T PF15330_consen 4 LGILALLLLLSLAASLLA 21 (107)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555555555543
No 22
>PF08173 YbgT_YccB: Membrane bound YbgT-like protein; InterPro: IPR012994 This family contains a set of membrane proteins, typically 33 amino acids long. The family has no known function, but the protein is found in the operon CydAB in Escherichia coli. Members have a consensus motif (MWYFXW), which is rich in aromatic residues. The protein forms a single membrane-spanning helix. This family seems to be restricted to proteobacteria [].
Probab=24.09 E-value=1.6e+02 Score=17.05 Aligned_cols=21 Identities=29% Similarity=0.388 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 030651 17 STLILTLLIMFTFAILILLAF 37 (174)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~ 37 (174)
++-++.+++.++|.++..+.+
T Consensus 4 faWilG~~lA~~~~i~~a~wl 24 (28)
T PF08173_consen 4 FAWILGVLLACAFGILNAMWL 24 (28)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 467888888888887766543
No 23
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=23.92 E-value=69 Score=21.44 Aligned_cols=20 Identities=15% Similarity=0.303 Sum_probs=17.4
Q ss_pred cHHHHHHHHHHHHhcCCCCC
Q 030651 140 DKIIRDIEKRIADFTFFPLG 159 (174)
Q Consensus 140 ~~vv~rI~~RIadlTGlp~e 159 (174)
+..|..+.++|++..|+|.+
T Consensus 18 ~~tV~~lK~~i~~~~gip~~ 37 (74)
T cd01793 18 QETVSDIKAHVAGLEGIDVE 37 (74)
T ss_pred cCcHHHHHHHHHhhhCCCHH
Confidence 45889999999999999874
No 24
>PF03754 DUF313: Domain of unknown function (DUF313) ; InterPro: IPR005508 This is a family of proteins from Arabidopsis thaliana (Mouse-ear cress) with uncharacterised function.
Probab=23.66 E-value=53 Score=24.89 Aligned_cols=12 Identities=33% Similarity=0.667 Sum_probs=11.3
Q ss_pred cCCCCHHHHHHH
Q 030651 90 HNFLSKEECEYL 101 (174)
Q Consensus 90 hdfLS~eEce~L 101 (174)
.|||+++|++.|
T Consensus 50 ~dFLt~eE~~~i 61 (114)
T PF03754_consen 50 NDFLTEEEKRII 61 (114)
T ss_pred cccCCHHHHHHH
Confidence 689999999999
No 25
>TIGR01397 fliM_switch flagellar motor switch protein FliM. Members of this family are the flagellar motor switch protein FliM. The family excludes FliM homologs that lack an N-terminal region critical to interaction with phosphorylated CheY. One set lacking this N-terminal region is found in Rhizobium meliloti, in which the direction of flagellar rotation is not reversible (i.e. the FliM homolog does not act to reverse the motor direction), and in related species. Another is found in Buchnera, an obligate intracellular endosymbiont with genes for many of the components of the flagellar apparatus, but not, apparently, for flagellin iself.
Probab=23.26 E-value=1.4e+02 Score=25.67 Aligned_cols=61 Identities=15% Similarity=0.157 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHhcC-CcccceeeeCCCCCccccceeeeeeeeeCCCCcHHHHHHHHHHHHh
Q 030651 91 NFLSKEECEYLINLATP-HMRKSTVVDSDTGKSKDSRVRTSSGTFLARGRDKIIRDIEKRIADF 153 (174)
Q Consensus 91 dfLS~eEce~Li~lakp-~L~rS~Vv~~~tG~~~~s~~RTS~~awL~~~~~~vv~rI~~RIadl 153 (174)
|+||.+|+|.|.+.... .-..+...... + .....|.-....-+..+.-+..+.|.+|.+..
T Consensus 1 ~~Lsq~EIdaLl~~~~~g~~~~~~~~~~~-~-~~v~~ydf~~~~~~s~~~l~~Le~i~e~far~ 62 (320)
T TIGR01397 1 DILSQDEIDALLGGLSEGDDSDEPSAVED-E-KKVKPYDFKRPDRVSKEQLRTLEIINERFARL 62 (320)
T ss_pred CCCCHHHHHHHHhcccCCCcccccccccc-c-CCceecCCCCccccchhhhhHHHHHHHHHHHH
Confidence 68999999999854422 11111000000 1 11222333333334455556777777777643
No 26
>KOG3551 consensus Syntrophins (type beta) [Extracellular structures]
Probab=22.91 E-value=54 Score=30.44 Aligned_cols=23 Identities=35% Similarity=0.606 Sum_probs=17.7
Q ss_pred CceeEEecc-CccEEEEcCCCCHH
Q 030651 74 EQWVEVISW-EPRAFVYHNFLSKE 96 (174)
Q Consensus 74 ~~kvE~LS~-dP~I~lyhdfLS~e 96 (174)
++.+...|. +|-||++|+|||.+
T Consensus 475 EiqLDLhscpKpiVFIlHsfLSAK 498 (506)
T KOG3551|consen 475 EIQLDLHSCPKPIVFILHSFLSAK 498 (506)
T ss_pred cEEeeeccCCCcEEEEehhhhhhh
Confidence 455555555 99999999999864
No 27
>PF15240 Pro-rich: Proline-rich
Probab=22.61 E-value=32 Score=28.27 Aligned_cols=14 Identities=36% Similarity=0.783 Sum_probs=7.1
Q ss_pred HHHHHHhccccCCC
Q 030651 31 ILILLAFGILSMPS 44 (174)
Q Consensus 31 ~~~~l~~~~~~~~~ 44 (174)
|||||.+++|+|.+
T Consensus 2 LlVLLSvALLALSS 15 (179)
T PF15240_consen 2 LLVLLSVALLALSS 15 (179)
T ss_pred hhHHHHHHHHHhhh
Confidence 34555555555543
No 28
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=22.20 E-value=79 Score=23.68 Aligned_cols=17 Identities=41% Similarity=0.585 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHhcc
Q 030651 23 LLIMFTFAILILLAFGI 39 (174)
Q Consensus 23 ~~~~~~~~~~~~l~~~~ 39 (174)
+|+-++++++++++++|
T Consensus 70 L~~~~ti~lv~~~~~~I 86 (103)
T PF12955_consen 70 LFAGFTIALVVLVAGAI 86 (103)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444443
No 29
>PF01448 ELM2: ELM2 domain; InterPro: IPR000949 The ELM2 (Egl-27 and MTA1 homology 2) domain is a small domain of unknown function. It is found in the MTA1 protein that is part of the NuRD complex []. The domain is usually found to the N terminus of a myb-like DNA binding domain and a GATA binding domain. ELM2, in some instances, is also found associated with the ARID DNA binding domain IPR001606 from INTERPRO. This suggests that ELM2 may also be involved in DNA binding, or perhaps is a protein-protein interaction domain.
Probab=22.18 E-value=97 Score=19.72 Aligned_cols=26 Identities=31% Similarity=0.524 Sum_probs=22.3
Q ss_pred eEEeccCccEEEEcCCCCHHHHHHHHHHhcC
Q 030651 77 VEVISWEPRAFVYHNFLSKEECEYLINLATP 107 (174)
Q Consensus 77 vE~LS~dP~I~lyhdfLS~eEce~Li~lakp 107 (174)
-+.+=|+| ++-+++++.+..+.+|+.
T Consensus 28 ~e~lvW~P-----~~~~~d~~l~~yl~~A~s 53 (55)
T PF01448_consen 28 EEELVWSP-----NNPLSDRKLEEYLKVAKS 53 (55)
T ss_pred cceEeECC-----CCCCCHHHHHHHHHHHHh
Confidence 67788999 589999999999998874
No 30
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional
Probab=21.99 E-value=4.7e+02 Score=21.82 Aligned_cols=32 Identities=13% Similarity=-0.113 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHhcCCCCCCCcceeeeeccCCC
Q 030651 142 IIRDIEKRIADFTFFPLGMQFKFSLFFFYVLK 173 (174)
Q Consensus 142 vv~rI~~RIadlTGlp~e~~E~lQVlrY~i~~ 173 (174)
....|.++++..+|++.-..+..=|-.|..|+
T Consensus 96 ~l~~L~~~~~~~~~~~~~~p~a~LvN~Y~~G~ 127 (213)
T PRK15401 96 SFLALAQRAAAAAGFPGFQPDACLINRYAPGA 127 (213)
T ss_pred HHHHHHHHHHHHcCCCCCCCCEEEEEeccCcC
Confidence 68899999999988865556666677777665
No 31
>PF13986 DUF4224: Domain of unknown function (DUF4224)
Probab=21.65 E-value=69 Score=20.36 Aligned_cols=16 Identities=31% Similarity=0.455 Sum_probs=12.2
Q ss_pred CCCCHHHHHHHHHHhc
Q 030651 91 NFLSKEECEYLINLAT 106 (174)
Q Consensus 91 dfLS~eEce~Li~lak 106 (174)
.|||++|+..|-..-+
T Consensus 1 ~fLT~~El~elTG~k~ 16 (47)
T PF13986_consen 1 EFLTDEELQELTGYKR 16 (47)
T ss_pred CCCCHHHHHHHHCCCC
Confidence 5899999988865443
No 32
>COG3162 Predicted membrane protein [Function unknown]
Probab=21.61 E-value=1e+02 Score=23.15 Aligned_cols=36 Identities=31% Similarity=0.391 Sum_probs=20.0
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHH---hccccCCCCCC
Q 030651 12 RKSSSSTLILTLLIMFTFAILILLA---FGILSMPSSSG 47 (174)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~~~~~ 47 (174)
||..+++..++++++..-+.++||+ =+.++.|....
T Consensus 20 ~kr~~Fa~~ltl~flv~Y~~filLiaf~~~~l~tp~~~~ 58 (102)
T COG3162 20 RKRRRFAVPLTLIFLVVYFGFILLIAFAPGWLATPLFGA 58 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcCcccCC
Confidence 3455566666665555444444443 36777776544
No 33
>PF12729 4HB_MCP_1: Four helix bundle sensory module for signal transduction; InterPro: IPR024478 This entry represents a four-helix bundle that operates as a ubiquitous sensory module in prokaryotic signal-transduction, which is known as four-helix bundles methyl-accepting chemotaxis protein (4HB_MCP) domain. The 4HB_MCP is always found between two predicted transmembrane helices indicating that it detects only extracellular signals. In many cases the domain is associated with a cytoplasmic HAMP domain suggesting that most proteins carrying the bundle might share the mechanism of transmembrane signalling which is well-characterised in E coli chemoreceptors [].
Probab=21.57 E-value=58 Score=23.92 Aligned_cols=7 Identities=29% Similarity=0.653 Sum_probs=2.6
Q ss_pred HhccccC
Q 030651 36 AFGILSM 42 (174)
Q Consensus 36 ~~~~~~~ 42 (174)
++|+.++
T Consensus 24 ~~~~~~l 30 (181)
T PF12729_consen 24 IVGLYSL 30 (181)
T ss_pred HHHHHHH
Confidence 3344333
No 34
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=20.78 E-value=84 Score=20.36 Aligned_cols=21 Identities=19% Similarity=0.086 Sum_probs=17.6
Q ss_pred cHHHHHHHHHHHHhcCCCCCC
Q 030651 140 DKIIRDIEKRIADFTFFPLGM 160 (174)
Q Consensus 140 ~~vv~rI~~RIadlTGlp~e~ 160 (174)
+..+..+.+.|+..+|+|.+.
T Consensus 19 ~~tv~~lK~~i~~~~gi~~~~ 39 (71)
T cd01812 19 QATFGDLKKMLAPVTGVEPRD 39 (71)
T ss_pred CCcHHHHHHHHHHhhCCChHH
Confidence 457889999999999998743
No 35
>TIGR02408 ectoine_ThpD ectoine hydroxylase. Both ectoine and hydroxyectoine are compatible solvents that serve as protectants against osmotic and thermal stresses. A number of genomes synthesize ectoine. This enzyme allows conversion of ectoine to hydroxyectoine, which may be more effective for some purposes, and is found in a subset of ectoine-producing organisms.
Probab=20.31 E-value=1.6e+02 Score=24.97 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=18.6
Q ss_pred EEEcCCCCHHHHHHHHHHhcCCc
Q 030651 87 FVYHNFLSKEECEYLINLATPHM 109 (174)
Q Consensus 87 ~lyhdfLS~eEce~Li~lakp~L 109 (174)
+++.+||+++||+.|.+.....+
T Consensus 31 vvl~~vls~eev~~lr~~i~~~~ 53 (277)
T TIGR02408 31 LLLENLFSDDEVAALLAEVERMT 53 (277)
T ss_pred EECcccCCHHHHHHHHHHHHHHH
Confidence 46899999999999988765433
No 36
>PF13544 N_methyl_2: Type IV pilin N-term methylation site GFxxxE; PDB: 3SOK_A 2HIL_L 1AY2_A 2PIL_A 2HI2_A 1OQW_A.
Probab=20.10 E-value=1.3e+02 Score=17.39 Aligned_cols=16 Identities=38% Similarity=0.428 Sum_probs=3.9
Q ss_pred CCCCchHHHHHHHHHH
Q 030651 11 TRKSSSSTLILTLLIM 26 (174)
Q Consensus 11 ~~~~~~~~~~~~~~~~ 26 (174)
.++..-+||+=.+..+
T Consensus 10 ~~~~~GFTLiEllVa~ 25 (31)
T PF13544_consen 10 RRRQRGFTLIELLVAM 25 (31)
T ss_dssp --------HHHHHHHH
T ss_pred ccccCCccHHHHHHHH
Confidence 3344556666544433
No 37
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=20.09 E-value=1.2e+02 Score=20.94 Aligned_cols=21 Identities=29% Similarity=0.482 Sum_probs=18.3
Q ss_pred CccEEEEcCCCCHHHHHHHHH
Q 030651 83 EPRAFVYHNFLSKEECEYLIN 103 (174)
Q Consensus 83 dP~I~lyhdfLS~eEce~Li~ 103 (174)
+..|+.+.+|++++|.+.+++
T Consensus 65 ~~~vi~v~~~l~~~ei~~i~~ 85 (87)
T cd05567 65 QAQHLSVDNFLNTPEYDELIE 85 (87)
T ss_pred CCeEEEEeccCChHHHHHHHH
Confidence 467889999999999998875
Done!