BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 030653
(174 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 91.3 bits (225), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 42/74 (56%), Positives = 52/74 (70%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
+I +GYV E T+A + DGW+ +GD+ Y ED FIVD LK L+KYKGCQVAPAELE
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGCQVAPAELE 460
Query: 159 HLLLSHPEMVDAAV 172
+LL HP + DA V
Sbjct: 461 SILLQHPNIFDAGV 474
>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform
pdb|1LCI|A Chain A, Firefly Luciferase
pdb|3RIX|A Chain A, 1.7a Resolution Structure Of A Firefly
Luciferase-Aspulvinone J Inhibitor Complex
pdb|4E5D|A Chain A, 2.2a Resolution Structure Of A Firefly
Luciferase-Benzothiazole Inhibitor Complex
Length = 550
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
+I +GYV E T+A + DGW+ +GD+ Y ED FIVD LK L+KYKG QVAPAELE
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELE 455
Query: 159 HLLLSHPEMVDAAV 172
+LL HP + DA V
Sbjct: 456 SILLQHPNIFDAGV 469
>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form)
pdb|3IER|A Chain A, Firefly Luciferase Apo Structure (P41 Form) With Peg 400
Bound
pdb|3IES|A Chain A, Firefly Luciferase Inhibitor Complex
Length = 551
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
+I +GYV E T+A + DGW+ +GD+ Y ED FIVD LK L+KYKG QVAPAELE
Sbjct: 396 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELE 455
Query: 159 HLLLSHPEMVDAAV 172
+LL HP + DA V
Sbjct: 456 SILLQHPNIFDAGV 469
>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
pdb|4G36|B Chain B, Photinus Pyralis Luciferase In The Adenylate-Forming
Conformation Bound To Dlsa
Length = 555
Score = 86.7 bits (213), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
+I +GYV E T+A + DGW+ +GD+ Y ED FIVD LK L+KYKG QVAPAELE
Sbjct: 401 MIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGYQVAPAELE 460
Query: 159 HLLLSHPEMVDAAV 172
+LL HP + DA V
Sbjct: 461 SILLQHPNIFDAGV 474
>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris
Turkestanicus Luciferase
Length = 582
Score = 82.8 bits (203), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
+I GYV E TSA + DGW+ +GD+ Y +D + FIVD LK L+KYKG QV PAELE
Sbjct: 431 MIMKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELE 490
Query: 159 HLLLSHPEMVDAAV 172
+LL HP + DA V
Sbjct: 491 SILLQHPFIFDAGV 504
>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Mgatp
pdb|2D1R|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With Oxyluciferin And Amp
Length = 548
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
++ GYV E T + +GW+ TGD+ Y E+ FIVD LK L+KYKG QV PAELE
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELE 457
Query: 159 HLLLSHPEMVDAAV 172
+LL HP + DA V
Sbjct: 458 SVLLQHPSIFDAGV 471
>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Complexed With High-Energy Intermediate
Analogue
Length = 548
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
++ GYV E T + +GW+ TGD+ Y E+ FIVD LK L+KYKG QV PAELE
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELE 457
Query: 159 HLLLSHPEMVDAAV 172
+LL HP + DA V
Sbjct: 458 SVLLQHPSIFDAGV 471
>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly
Luciferase Red-Color Emission S286n Mutant Complexed
With High-Energy Intermediate Analogue
Length = 548
Score = 76.3 bits (186), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 37/74 (50%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
Query: 101 LISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELE 158
++ GYV E T + +GW+ TGD+ Y E+ FIVD LK L+KYKG QV PAELE
Sbjct: 398 MLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAELE 457
Query: 159 HLLLSHPEMVDAAV 172
+LL HP + DA V
Sbjct: 458 SVLLQHPSIFDAGV 471
>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3A9V|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate--Coa Ligase
pdb|3NI2|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus
Tomentosa 4- Coumarate:coa Ligase
Length = 536
Score = 74.7 bits (182), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 45/91 (49%), Positives = 61/91 (67%), Gaps = 6/91 (6%)
Query: 85 RTLSMWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSF--LFIVDGLK 142
R + + G + +K GY+ + E TS T+ +GW+ TGD+ Y D LFIVD LK
Sbjct: 379 RNQPGEICIRGDQIMK----GYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLK 434
Query: 143 DLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
+L+KYKG QVAPAELE LL++HPE+ DAAV+
Sbjct: 435 ELIKYKGFQVAPAELEALLIAHPEISDAAVV 465
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 69.7 bits (169), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 39/74 (52%), Positives = 50/74 (67%), Gaps = 2/74 (2%)
Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCYEDSF--LFIVDGLKDLVKYKGCQVAPAELEH 159
I GY+ T+ T+ DGW+ TGD+ D LFIVD LK+L+KYKG QVAPAELE
Sbjct: 439 IMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEA 498
Query: 160 LLLSHPEMVDAAVI 173
LL+ HP++ D AV+
Sbjct: 499 LLIGHPDITDVAVV 512
>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1ULT|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V25|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
pdb|1V26|B Chain B, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8
Length = 541
Score = 65.1 bits (157), Expect = 2e-11, Method: Composition-based stats.
Identities = 31/74 (41%), Positives = 49/74 (66%), Gaps = 2/74 (2%)
Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
I+ GY G +E T + L PDG+ RTGD+ E+ ++ I D LKDL+K G ++ +LE+
Sbjct: 393 ITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLEN 452
Query: 160 LLLSHPEMVDAAVI 173
L+ HP++ +AAV+
Sbjct: 453 ALMGHPKVKEAAVV 466
>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Methylmalonyl-Coa And Amp Bound
pdb|3NYR|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With
Malonyl-Coa And Amp Bound
Length = 505
Score = 50.1 bits (118), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 106 YVGEQEVTSATLLPDGWMRTGDLCYEDSFLFI-VDGLK--DLVKYKGCQVAPAELEHLLL 162
Y+ + T+A DG+ RTGD+ D ++ + G K DL+K G ++ E+E+ LL
Sbjct: 367 YLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALL 426
Query: 163 SHPEMVDAAV 172
HPE+ +AAV
Sbjct: 427 EHPEVREAAV 436
>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
pdb|3G7S|B Chain B, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase
(Fadd1) From Archaeoglobus Fulgidus
Length = 549
Score = 50.1 bits (118), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 2/54 (3%)
Query: 122 WMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
+ RTGD+ + E+ FL D +K+++KYKG +AP ELE LL H + D AVI
Sbjct: 417 FFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVI 470
>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate
pdb|1MDF|A Chain A, Crystal Structure Of Dhbe In Absence Of Substrate
Length = 539
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
GY +E +A+ DG+ RTGD+ D ++ + KD + G +VA E+E+ LL
Sbjct: 391 GYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL 450
Query: 163 SHPEMVDAAVI 173
+HP + DAA++
Sbjct: 451 AHPAVHDAAMV 461
>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase
Length = 517
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 120 DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
+GW RTGD+ ++ +L+I D LKD++ G V PAE+E +++ P + + AVI
Sbjct: 389 NGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVI 444
>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
pdb|3PBK|B Chain B, Structural And Functional Studies Of Fatty Acyl-Adenylate
Ligases From E. Coli And L. Pneumophila
Length = 583
Score = 47.0 bits (110), Expect = 5e-06, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGDLCYE-DSFLFIVDGLKDLVKYKGCQVAPAELEHL 160
+ +GY G+Q V+ + GW+ TGDL Y D +L++ +KDL+ +G + P ++E++
Sbjct: 420 LXSGYFGDQ-VSQDEIAATGWLDTGDLGYLLDGYLYVTGRIKDLIIIRGRNIWPQDIEYI 478
Query: 161 LLSHPEM 167
PE+
Sbjct: 479 AEQEPEI 485
>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp
Length = 539
Score = 46.6 bits (109), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 105 GYVGEQEVTSATLLPDGWMRTGDLC--YEDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
GY +E +A+ DG+ RTGD+ D ++ + KD + G +VA E+E+ LL
Sbjct: 391 GYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLL 450
Query: 163 SHPEMVDAAVI 173
+HP + DAA +
Sbjct: 451 AHPAVHDAAXV 461
>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
pdb|3ETC|B Chain B, 2.1 A Structure Of Acyl-Adenylate Synthetase From
Methanosarcina Acetivorans Containing A Link Between
Lys256 And Cys298
Length = 580
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 34/55 (61%), Gaps = 2/55 (3%)
Query: 120 DGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAV 172
DG+ TGD+ + ED +L+ V D++K G +V P E+E L+ HP +++ A+
Sbjct: 451 DGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAI 505
>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|B Chain B, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
pdb|2WD9|C Chain C, Crystal Structure Of Human Acyl-coa Synthetase
Medium-chain Family Member 2a (l64p Mutation) In Complex
With Ibuprofen
Length = 569
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGD--LCYEDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
I +GYV + T+A + D W+ GD + ED + + D++ G ++ P+E+E+
Sbjct: 415 IFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVEN 473
Query: 160 LLLSHPEMVDAAVI 173
L+ HP +V+ AVI
Sbjct: 474 ALMEHPAVVETAVI 487
>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a, With L64p Mutation
pdb|3C5E|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Atp
pdb|3DAY|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp-Cpp
pdb|2VZE|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|2VZE|C Chain C, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In Complex
With Amp
pdb|3EQ6|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3EQ6|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Ternary Complex With Products
pdb|3GPC|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
pdb|3GPC|B Chain B, Crystal Structure Of Human Acyl-Coa Synthetase
Medium-Chain Family Member 2a (L64p Mutation) In A
Complex With Coa
Length = 570
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 102 ISAGYVGEQEVTSATLLPDGWMRTGD--LCYEDSFLFIVDGLKDLVKYKGCQVAPAELEH 159
I +GYV + T+A + D W+ GD + ED + + D++ G ++ P+E+E+
Sbjct: 415 IFSGYVDNPDKTAANIRGDFWL-LGDRGIKDEDGYFQFMGRADDIINSSGYRIGPSEVEN 473
Query: 160 LLLSHPEMVDAAVI 173
L+ HP +V+ AVI
Sbjct: 474 ALMEHPAVVETAVI 487
>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O82|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine
pdb|3O83|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O83|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
2-(4-N-Dodecyl-1,2,
3-Triazol-1-Yl)-5'-O-[n-(2-Hydroxybenzoyl)
Sulfamoyl]adenosine
pdb|3O84|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3O84|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-Phenyl-1-(Pyridin-4-Ylmethyl)-1h-Pyrazolo[3,
4-B]pyridine-4- Carboxylic Acid.
pdb|3U16|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U16|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzyloxy)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid.
pdb|3U17|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
pdb|3U17|B Chain B, Structure Of Base N-Terminal Domain From Acinetobacter
Baumannii Bound To
6-(P-Benzoyl)phenyl-1-(Pyridin-4-Ylmethyl)-1h-
Pyrazolo[3,4- B]pyridine-4-Carboxylic Acid
Length = 544
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCYE--DSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
GY E S D + +GDL D L +V +KD + G ++A E+E L+L
Sbjct: 400 GYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEKIASEEIEKLIL 459
Query: 163 SHPEMVDAAVI 173
HPE++ AA++
Sbjct: 460 LHPEVMHAALV 470
>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
pdb|3IVR|B Chain B, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa
Ligase From Rhodopseudomonas Palustris Cga009
Length = 509
Score = 42.4 bits (98), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Query: 120 DGWMRTGDLCY--EDSFLFIVDGL--KDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
+GW TGD+ D +LF K+L+K G V PAE+E L HP + DA VI
Sbjct: 374 NGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVI 431
>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
pdb|2V7B|B Chain B, Crystal Structures Of A Benzoate Coa Ligase From
Burkholderia Xenovorans Lb400
Length = 529
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 5/84 (5%)
Query: 94 LGSKFVKLISAG--YVGEQEVTSATLLPDGWMRTGD-LCYEDSFLFIVDGLKD-LVKYKG 149
+G ++K SA Y +E + AT L + W+R+GD C + ++ G D ++K G
Sbjct: 378 VGDLYIKGPSAAVMYWNNREKSRATFLGE-WIRSGDKYCRLPNGCYVYAGRSDDMLKVSG 436
Query: 150 CQVAPAELEHLLLSHPEMVDAAVI 173
V+P E+E +L+ H +++AAV+
Sbjct: 437 QYVSPVEVEMVLVQHDAVLEAAVV 460
>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To
4cba-adenylate
Length = 504
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 89 MWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVK 146
+ VA S FV GY+ + E T A L DGW RT D+ + + I+ + D++
Sbjct: 353 LIVAASDSAFV-----GYLNQPEAT-AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMII 406
Query: 147 YKGCQVAPAELEHLLLSHPEMVDAAVI 173
G + P+E+E +L + P + + VI
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVI 433
>pdb|4GR5|A Chain A, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|B Chain B, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|C Chain C, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
pdb|4GR5|D Chain D, Crystal Structure Of Slgn1deltaasub In Complex With Ampcpp
Length = 570
Score = 39.3 bits (90), Expect = 0.001, Method: Composition-based stats.
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 10/82 (12%)
Query: 102 ISAGYVGEQEVTSATLLPDGWM--------RTGDLCYE--DSFLFIVDGLKDLVKYKGCQ 151
++ GYV +T+ + D + RTGDL D L V D VK +G +
Sbjct: 419 LAHGYVSRPALTAERFVADPFAGPGGERMYRTGDLARRRADGVLEYVGRADDQVKIRGFR 478
Query: 152 VAPAELEHLLLSHPEMVDAAVI 173
V P E+E L+ HP + AAV+
Sbjct: 479 VEPGEVEARLVGHPAVRQAAVL 500
>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|B Chain B, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|C Chain C, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
pdb|4FUQ|D Chain D, Crystal Structure Of Apo Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
GY E T + DG+ TGDL E ++ I+ KDLV G V P E+E +
Sbjct: 360 GYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID 419
Query: 163 SHPEMVDAAVI 173
+ P +V++AVI
Sbjct: 420 AXPGVVESAVI 430
>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QW0|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, I303a Mutation,
Bound To 3,4 Dichlorobenzoate
Length = 504
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 89 MWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVK 146
+ VA S FV GY+ + + T A L DGW RT D+ + + I+ + D++
Sbjct: 353 LIVAASDSAFV-----GYLNQPQAT-AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMII 406
Query: 147 YKGCQVAPAELEHLLLSHPEMVDAAVI 173
G + P+E+E +L + P + + VI
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVI 433
>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3- Chlorobenzoate
pdb|2QVY|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION,
BOUND TO 3,4- Dichlorobenzoate
Length = 504
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 89 MWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVK 146
+ VA S FV GY+ + + T A L DGW RT D+ + + I+ + D++
Sbjct: 353 LIVAASDSAFV-----GYLNQPQAT-AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMII 406
Query: 147 YKGCQVAPAELEHLLLSHPEMVDAAVI 173
G + P+E+E +L + P + + VI
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVI 433
>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO
4-Chlorobenzoate
pdb|3CW9|A Chain A, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
pdb|3CW9|B Chain B, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE IN THE
THIOESTER-Forming Conformation, Bound To
4-Chlorophenacyl-Coa
Length = 504
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 89 MWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVK 146
+ VA S FV GY+ + + T A L DGW RT D+ + + I+ + D++
Sbjct: 353 LIVAASDSAFV-----GYLNQPQAT-AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMII 406
Query: 147 YKGCQVAPAELEHLLLSHPEMVDAAVI 173
G + P+E+E +L + P + + VI
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVI 433
>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND
To 4cb
Length = 504
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 8/87 (9%)
Query: 89 MWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVK 146
+ VA S FV GY+ + + T A L DGW RT D+ + + I+ + D++
Sbjct: 353 LIVAASDSAFV-----GYLNQPQAT-AEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMII 406
Query: 147 YKGCQVAPAELEHLLLSHPEMVDAAVI 173
G + P+E+E +L + P + + VI
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVI 433
>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED,
SELENOMETHIONINE
Length = 504
Score = 37.0 bits (84), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 8/87 (9%)
Query: 89 MWVAVLGSKFVKLISAGYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVK 146
+ VA S FV GY+ + + T A L DGW RT D+ + + I+ + D +
Sbjct: 353 LIVAASDSAFV-----GYLNQPQAT-AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXII 406
Query: 147 YKGCQVAPAELEHLLLSHPEMVDAAVI 173
G + P+E+E +L + P + + VI
Sbjct: 407 SGGENIHPSEIERVLGTAPGVTEVVVI 433
>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
pdb|2P2F|B Chain B, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And
Coa Bound
Length = 652
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 131 EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
ED + +I + D++ G ++ AE+E L++HP++ +AAV+
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation
pdb|2P2J|B Chain B, Acetyl-Coa Synthetase, K609a Mutation
Length = 652
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 131 EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
ED + +I + D++ G ++ AE+E L++HP++ +AAV+
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation
pdb|2P2B|B Chain B, Acetyl-coa Synthetase, V386a Mutation
Length = 652
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 131 EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
ED + +I + D++ G ++ AE+E L++HP++ +AAV+
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation
pdb|2P2Q|B Chain B, Acetyl-Coa Synthetase, R584e Mutation
Length = 652
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 131 EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
ED + +I + D++ G ++ AE+E L++HP++ +AAV+
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation
pdb|2P2M|B Chain B, Acetyl-Coa Synthetase, R194a Mutation
Length = 652
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 131 EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
ED + +I + D++ G ++ AE+E L++HP++ +AAV+
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation
pdb|2P20|B Chain B, Acetyl-Coa Synthetase, R584a Mutation
Length = 652
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 131 EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
ED + +I + D++ G ++ AE+E L++HP++ +AAV+
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG3|B Chain B, Acetyl Coa Synthetase, Acetylated On Lys609
pdb|1PG4|A Chain A, Acetyl Coa Synthetase, Salmonella Enterica
pdb|1PG4|B Chain B, Acetyl Coa Synthetase, Salmonella Enterica
Length = 652
Score = 36.6 bits (83), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 131 EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
ED + +I + D++ G ++ AE+E L++HP++ +AAV+
Sbjct: 506 EDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVV 548
>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|B Chain B, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|C Chain C, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|D Chain D, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|E Chain E, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|F Chain F, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|G Chain G, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|H Chain H, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|I Chain I, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
pdb|3RG2|J Chain J, Structure Of A Two-Domain Nrps Fusion Protein Containing
The Ente Adenylation Domain And Entb Aryl-Carrier
Protein From Enterobactin Biosynthesis
Length = 617
Score = 36.2 bits (82), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCYEDSFLFI-VDGL-KDLVKYKGCQVAPAELEHLLL 162
GY + ++ +G+ +GDL D +I V G KD + G ++A E+E+LLL
Sbjct: 395 GYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKIAAEEIENLLL 454
Query: 163 SHPEMVDAAVI 173
HP ++ AA++
Sbjct: 455 RHPAVIYAALV 465
>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3
Length = 503
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
GY E T + DG+ TGDL E ++ I+ DLV G V P E+E +
Sbjct: 360 GYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID 419
Query: 163 SHPEMVDAAVI 173
+ P +V++AVI
Sbjct: 420 AMPGVVESAVI 430
>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|B Chain B, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
pdb|4GXQ|C Chain C, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1
Length = 506
Score = 35.8 bits (81), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
GY E T + DG+ TGDL E ++ I+ DLV G V P E+E +
Sbjct: 360 GYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID 419
Query: 163 SHPEMVDAAVI 173
+ P +V++AVI
Sbjct: 420 AMPGVVESAVI 430
>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas
Palustris
Length = 503
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 105 GYVGEQEVTSATLLPDGWMRTGDLCY--EDSFLFIVDGLKDLVKYKGCQVAPAELEHLLL 162
GY E T + DG+ TGDL E ++ I+ DLV G V P E+E +
Sbjct: 360 GYWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEID 419
Query: 163 SHPEMVDAAVI 173
+ P +V++AVI
Sbjct: 420 AMPGVVESAVI 430
>pdb|3FCC|A Chain A, Crystal Structure Of Dlta Protein In Complex With Atp And
Magnesium
pdb|3FCE|A Chain A, Crystal Structure Of Bacillus Cereus D-Alanyl Carrier
Protein Ligase Dlta In Complex With Atp: Implications
For Adenylation Mechanism
Length = 512
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 102 ISAGYVGEQEVTS-ATLLPDG--WMRTGDLCYEDSFLFIVDGLKDL-VKYKGCQVAPAEL 157
+S GY+G E+T A + DG +TGD Y ++ L +G D +K G ++ E+
Sbjct: 355 VSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEI 414
Query: 158 EHLLLSHPEMVDAAVIP 174
EH L + + A ++P
Sbjct: 415 EHHLRACSYVEGAVIVP 431
>pdb|3DHV|A Chain A, Crystal Structure Of Dlta Protein In Complex With
D-Alanine Adenylate
Length = 512
Score = 32.7 bits (73), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 102 ISAGYVGEQEVTS-ATLLPDG--WMRTGDLCYEDSFLFIVDGLKDL-VKYKGCQVAPAEL 157
+S GY+G E+T A + DG +TGD Y ++ L +G D +K G ++ E+
Sbjct: 355 VSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYNGRLDFQIKLHGYRMELEEI 414
Query: 158 EHLLLSHPEMVDAAVIP 174
EH L + + A ++P
Sbjct: 415 EHHLRACSYVEGAVIVP 431
>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In
Complex With Amp
Length = 663
Score = 30.4 bits (67), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 121 GWMRTGDLCYED--SFLFIVDGLKDLVKYKGCQVAPAELEHLLLSHPEMVDAAVI 173
G+ TGD +D +++I+ + D+V G +++ AE+E ++ P + + AV+
Sbjct: 503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVV 557
>pdb|3E7W|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
pdb|3E7X|A Chain A, Crystal Structure Of Dlta: Implications For The Reaction
Mechanism Of Non-Ribosomal Peptide Synthetase (Nrps)
Adenylation Domains
Length = 511
Score = 28.5 bits (62), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 4/77 (5%)
Query: 102 ISAGYVGEQEVTSATLLP-DG-WM-RTGDLCY-EDSFLFIVDGLKDLVKYKGCQVAPAEL 157
+S GY+GE E+T +G W RTGD + +D +F L +K G ++ E+
Sbjct: 354 VSRGYLGEPELTEKAFFSHEGQWAYRTGDAGFIQDGQIFCQGRLDFQIKLHGYRMELEEI 413
Query: 158 EHLLLSHPEMVDAAVIP 174
E + + A VIP
Sbjct: 414 EFHVRQSQYVRSAVVIP 430
>pdb|1FNT|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1FNT|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|2ZCY|F Chain F, Yeast 20s Proteasome:syringolin A-Complex
pdb|2ZCY|T Chain T, Yeast 20s Proteasome:syringolin A-Complex
pdb|3BDM|F Chain F, Yeast 20s Proteasome:glidobactin A-Complex
pdb|3BDM|T Chain T, Yeast 20s Proteasome:glidobactin A-Complex
Length = 287
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 140 GLKDLVKYKGCQVAPAELEHLLLSHPEMVDA 170
G K KG Q A AELE L+ HPE + A
Sbjct: 158 GYKGAATGKGRQSAKAELEKLVDHHPEGLSA 188
>pdb|1Z7Q|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|1Z7Q|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast In
Complex With The Proteasome Activator Pa26 From
Trypanosome Brucei At 3.2 Angstroms Resolution
pdb|3NZJ|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZJ|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Ligand 2a
pdb|3NZW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With 2b
pdb|3NZX|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3NZX|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Ligand 2c
pdb|3UN4|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN4|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Morpholine)
pdb|3UN8|F Chain F, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|3UN8|T Chain T, Yeast 20s Proteasome In Complex With Pr-957 (Epoxide)
pdb|4B4T|G Chain G, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
pdb|4G4S|G Chain G, Structure Of Proteasome-Pba1-Pba2 Complex
pdb|4INR|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INR|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu102
pdb|4INT|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INT|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu122
pdb|4INU|F Chain F, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
pdb|4INU|T Chain T, Yeast 20s Proteasome In Complex With The Vinyl Sulfone
Lu112
Length = 288
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 140 GLKDLVKYKGCQVAPAELEHLLLSHPEMVDA 170
G K KG Q A AELE L+ HPE + A
Sbjct: 159 GYKGAATGKGRQSAKAELEKLVDHHPEGLSA 189
>pdb|1G0U|F Chain F, A Gated Channel Into The Proteasome Core Particle
pdb|1G0U|T Chain T, A Gated Channel Into The Proteasome Core Particle
pdb|3MG6|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG6|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
6
pdb|3MG7|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG7|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
8
pdb|3MG8|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
pdb|3MG8|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
16
Length = 248
Score = 28.1 bits (61), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 140 GLKDLVKYKGCQVAPAELEHLLLSHPEMVDA 170
G K KG Q A AELE L+ HPE + A
Sbjct: 159 GYKGAATGKGRQSAKAELEKLVDHHPEGLSA 189
>pdb|1RYP|G Chain G, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1RYP|U Chain U, Crystal Structure Of The 20s Proteasome From Yeast At 2.4
Angstroms Resolution
pdb|1G65|F Chain F, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1G65|T Chain T, Crystal Structure Of Epoxomicin:20s Proteasome Reveals A
Molecular Basis For Selectivity Of
Alpha,Beta-Epoxyketone Proteasome Inhibitors
pdb|1JD2|F Chain F, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|1JD2|1 Chain 1, Crystal Structure Of The Yeast 20s Proteasome:tmc-95a
Complex: A Non- Covalent Proteasome Inhibitor
pdb|2F16|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2F16|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Bortezomib
pdb|2FAK|F Chain F, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2FAK|T Chain T, Crystal Structure Of Salinosporamide A In Complex With The
Yeast 20s Proteasome
pdb|2GPL|F Chain F, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|2GPL|T Chain T, Tmc-95 Based Biphenyl-Ether Macrocycles: Specific
Proteasome Inhibitors
pdb|3D29|F Chain F, Proteasome Inhibition By Fellutamide B
pdb|3D29|T Chain T, Proteasome Inhibition By Fellutamide B
pdb|3E47|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3E47|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Homobelactosin C
pdb|3DY3|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY3|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
The Epimer Form Of Spirolactacystin
pdb|3DY4|F Chain F, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3DY4|T Chain T, Crystal Structure Of Yeast 20s Proteasome In Complex With
Spirolactacystin
pdb|3GPJ|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPJ|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Syringolin B
pdb|3GPT|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPT|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Slow Substrate Ligand
pdb|3GPW|F Chain F, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3GPW|T Chain T, Crystal Structure Of The Yeast 20s Proteasome In Complex
With Salinosporamide Derivatives: Irreversible Inhibitor
Ligand
pdb|3HYE|F Chain F, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|3HYE|T Chain T, Crystal Structure Of 20s Proteasome In Complex With
Hydroxylated Salinosporamide
pdb|1VSY|G Chain G, Proteasome Activator Complex
pdb|1VSY|U Chain U, Proteasome Activator Complex
pdb|3L5Q|L Chain L, Proteasome Activator Complex
pdb|3L5Q|X Chain X, Proteasome Activator Complex
pdb|3MG4|F Chain F, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG4|T Chain T, Structure Of Yeast 20s Proteasome With Compound 1
pdb|3MG0|F Chain F, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3MG0|T Chain T, Structure Of Yeast 20s Proteasome With Bortezomib
pdb|3OKJ|F Chain F, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3OKJ|T Chain T, Alpha-Keto-Aldehyde Binding Mechanism Reveals A Novel Lead
Structure Motif For Proteasome Inhibition
pdb|3TDD|F Chain F, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3TDD|T Chain T, Crystal Structure Of Yeast Cp In Complex With Belactosin C
pdb|3SHJ|F Chain F, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|3SHJ|T Chain T, Proteasome In Complex With Hydroxyurea Derivative Hu10
pdb|4GK7|F Chain F, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4GK7|T Chain T, Yeast 20s Proteasome In Complex With The
Syringolin-Glidobactin Chimera
pdb|4FZC|F Chain F, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZC|T Chain T, 20s Yeast Proteasome In Complex With Cepafungin I
pdb|4FZG|F Chain F, 20s Yeast Proteasome In Complex With Glidobactin
pdb|4FZG|T Chain T, 20s Yeast Proteasome In Complex With Glidobactin
Length = 244
Score = 28.1 bits (61), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 140 GLKDLVKYKGCQVAPAELEHLLLSHPEMVDA 170
G K KG Q A AELE L+ HPE + A
Sbjct: 155 GYKGAATGKGRQSAKAELEKLVDHHPEGLSA 185
>pdb|3OEU|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEU|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
24
pdb|3OEV|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3OEV|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
25
pdb|3SDI|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDI|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
20
pdb|3SDK|F Chain F, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
pdb|3SDK|T Chain T, Structure Of Yeast 20s Open-Gate Proteasome With Compound
34
Length = 242
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 140 GLKDLVKYKGCQVAPAELEHLLLSHPEMVDA 170
G K KG Q A AELE L+ HPE + A
Sbjct: 153 GYKGAATGKGRQSAKAELEKLVDHHPEGLSA 183
>pdb|3Q3E|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3E|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase
pdb|3Q3H|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3H|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In Complex With Udp-Glc
pdb|3Q3I|A Chain A, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
pdb|3Q3I|B Chain B, Crystal Structure Of The Actinobacillus Pleuropneumoniae
Hmw1c Glycosyltransferase In The Presence Of Peptide
N1131
Length = 631
Score = 26.6 bits (57), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 26/85 (30%)
Query: 92 AVLGSKFVK--LISAGYVGEQEVTSATLL--PDGWMRTGDLCYEDSFLFIVDGLKDLVKY 147
A S F++ ++ YVG +E S TLL P KD + Y
Sbjct: 384 ATTHSDFIEYVIVEDDYVGSEECFSETLLRLP----------------------KDALPY 421
Query: 148 KGCQVAPAELEHLLLSHPEMVDAAV 172
+AP ++++LL +PE+V+ +
Sbjct: 422 VPSALAPEKVDYLLRENPEVVNIGI 446
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,675,913
Number of Sequences: 62578
Number of extensions: 113123
Number of successful extensions: 266
Number of sequences better than 100.0: 53
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 200
Number of HSP's gapped (non-prelim): 53
length of query: 174
length of database: 14,973,337
effective HSP length: 92
effective length of query: 82
effective length of database: 9,216,161
effective search space: 755725202
effective search space used: 755725202
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)