Query 030654
Match_columns 174
No_of_seqs 15 out of 17
Neff 1.8
Searched_HMMs 46136
Date Fri Mar 29 02:34:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/030654.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/030654hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10177 DUF2371: Uncharacteri 68.4 3.9 8.5E-05 32.9 2.1 26 133-158 39-64 (141)
2 PF09838 DUF2065: Uncharacteri 57.2 9.6 0.00021 26.2 2.1 18 136-153 2-19 (57)
3 PF13126 DUF3975: Protein of u 51.4 12 0.00026 28.5 2.0 16 132-147 8-23 (85)
4 KOG4615 Uncharacterized conser 46.6 13 0.00029 29.5 1.7 19 138-156 67-85 (122)
5 PF02656 DUF202: Domain of unk 46.4 28 0.00061 23.2 3.1 29 126-155 4-32 (73)
6 COG2149 Predicted membrane pro 36.4 40 0.00087 27.1 3.0 37 118-155 12-48 (120)
7 PRK00523 hypothetical protein; 32.9 63 0.0014 23.9 3.3 29 136-167 7-35 (72)
8 COG4068 Uncharacterized protei 32.8 81 0.0018 23.1 3.8 17 129-145 40-56 (64)
9 PHA03131 dUTPase; Provisional 30.5 92 0.002 27.2 4.5 14 57-70 272-285 (286)
10 COG1585 Membrane protein impli 30.0 84 0.0018 24.6 3.8 33 130-164 23-56 (140)
11 PF11241 DUF3043: Protein of u 27.4 59 0.0013 27.0 2.6 18 134-151 106-123 (170)
12 TIGR02848 spore_III_AC stage I 25.4 77 0.0017 23.0 2.6 22 122-143 23-44 (64)
13 TIGR00945 tatC Twin arginine t 23.3 1.3E+02 0.0028 24.4 3.9 41 126-166 89-129 (215)
14 PF15555 DUF4658: Domain of un 21.8 49 0.0011 26.9 1.2 22 92-113 6-27 (129)
15 PF11169 DUF2956: Protein of u 21.7 64 0.0014 25.3 1.8 12 133-144 91-102 (103)
16 COG4252 Predicted transmembran 21.5 1.1E+02 0.0023 28.3 3.4 28 127-154 323-359 (400)
17 PF04093 MreD: rod shape-deter 20.8 3.4E+02 0.0074 19.8 5.5 49 121-169 88-137 (160)
18 PLN03084 alpha/beta hydrolase 20.8 84 0.0018 27.6 2.5 13 1-13 1-13 (383)
19 PF13172 PepSY_TM_1: PepSY-ass 20.6 73 0.0016 19.1 1.5 20 140-159 13-32 (34)
20 PF14333 DUF4389: Domain of un 20.5 1.8E+02 0.0038 20.7 3.7 29 133-161 20-48 (80)
No 1
>PF10177 DUF2371: Uncharacterised conserved protein (DUF2371); InterPro: IPR018787 This family of proteins with no known function is conserved from nematodes to humans. It includes members of the TMEM200 family of transmembrane proteins.
Probab=68.38 E-value=3.9 Score=32.93 Aligned_cols=26 Identities=27% Similarity=0.193 Sum_probs=22.5
Q ss_pred HHHHHhhhHHHHHhhhHHhhccchhh
Q 030654 133 LLAWLGVGGIILFQGIALAASVKKLS 158 (174)
Q Consensus 133 LLAWLGLG~IILvEGIaLAASGF~~~ 158 (174)
--.|+.+|++|++=|||+|.-||-|.
T Consensus 39 Sg~~l~lG~lvllvGiaMAv~GYwp~ 64 (141)
T PF10177_consen 39 SGLFLLLGILVLLVGIAMAVLGYWPK 64 (141)
T ss_pred HHHHHHHHHHHHHHhhHhheeecccc
Confidence 34678999999999999999998665
No 2
>PF09838 DUF2065: Uncharacterized protein conserved in bacteria (DUF2065); InterPro: IPR019201 This entry represents a protein found in various prokaryotic proteins, and has no known function.
Probab=57.16 E-value=9.6 Score=26.16 Aligned_cols=18 Identities=11% Similarity=0.325 Sum_probs=15.7
Q ss_pred HHhhhHHHHHhhhHHhhc
Q 030654 136 WLGVGGIILFQGIALAAS 153 (174)
Q Consensus 136 WLGLG~IILvEGIaLAAS 153 (174)
|+++|.+..+|||..+++
T Consensus 2 l~algLvliiEGl~~~l~ 19 (57)
T PF09838_consen 2 LAALGLVLIIEGLLPFLA 19 (57)
T ss_pred HHHHHHHHHHHhhHHHhC
Confidence 789999999999987764
No 3
>PF13126 DUF3975: Protein of unknown function (DUF3975)
Probab=51.39 E-value=12 Score=28.46 Aligned_cols=16 Identities=44% Similarity=0.785 Sum_probs=13.9
Q ss_pred HHHHHHhhhHHHHHhh
Q 030654 132 FLLAWLGVGGIILFQG 147 (174)
Q Consensus 132 FLLAWLGLG~IILvEG 147 (174)
-+|||.-||++||.|-
T Consensus 8 q~lawitlgivillqi 23 (85)
T PF13126_consen 8 QILAWITLGIVILLQI 23 (85)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3799999999999873
No 4
>KOG4615 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.55 E-value=13 Score=29.53 Aligned_cols=19 Identities=42% Similarity=0.445 Sum_probs=16.6
Q ss_pred hhhHHHHHhhhHHhhccch
Q 030654 138 GVGGIILFQGIALAASVKK 156 (174)
Q Consensus 138 GLG~IILvEGIaLAASGF~ 156 (174)
|-|++||+|-|||-|.|..
T Consensus 67 gwgavilaeiialiaagtv 85 (122)
T KOG4615|consen 67 GWGAVILAEIIALIAAGTV 85 (122)
T ss_pred chhHHHHHHHHHHHhcCce
Confidence 4689999999999999864
No 5
>PF02656 DUF202: Domain of unknown function (DUF202); InterPro: IPR003807 This entry describes proteins of unknown function.
Probab=46.39 E-value=28 Score=23.24 Aligned_cols=29 Identities=31% Similarity=0.509 Sum_probs=20.9
Q ss_pred hhhhhHHHHHHHhhhHHHHHhhhHHhhccc
Q 030654 126 MKNESAFLLAWLGVGGIILFQGIALAASVK 155 (174)
Q Consensus 126 ~~nEsAFLLAWLGLG~IILvEGIaLAASGF 155 (174)
-+||--| |||+-.++.+++=|+++.--+.
T Consensus 4 lA~ERT~-LaW~Rt~l~l~~~g~~l~~~~~ 32 (73)
T PF02656_consen 4 LANERTF-LAWIRTALALVGVGLALLRFFS 32 (73)
T ss_pred hhHHHHH-HHHHHHHHHHHHHHHHHHHhcc
Confidence 3567665 4999888888888887765443
No 6
>COG2149 Predicted membrane protein [Function unknown]
Probab=36.37 E-value=40 Score=27.06 Aligned_cols=37 Identities=30% Similarity=0.489 Sum_probs=27.5
Q ss_pred hHHHHHHhhhhhhHHHHHHHhhhHHHHHhhhHHhhccc
Q 030654 118 DEAKAKEMMKNESAFLLAWLGVGGIILFQGIALAASVK 155 (174)
Q Consensus 118 ~~~~~~e~~~nEsAFLLAWLGLG~IILvEGIaLAASGF 155 (174)
++.+-|..++||--| |||+=-.+-+++=|+++..-++
T Consensus 12 e~pd~R~~lAnERTF-LAWiRTsLallafGvai~~f~~ 48 (120)
T COG2149 12 EEPDYRFTLANERTF-LAWIRTSLALLAFGVAIDQFVP 48 (120)
T ss_pred cCccHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 445667899999887 5898777777777777776544
No 7
>PRK00523 hypothetical protein; Provisional
Probab=32.86 E-value=63 Score=23.87 Aligned_cols=29 Identities=24% Similarity=0.195 Sum_probs=15.0
Q ss_pred HHhhhHHHHHhhhHHhhccchhhHHHHHHHHH
Q 030654 136 WLGVGGIILFQGIALAASVKKLSFLHFLTYVK 167 (174)
Q Consensus 136 WLGLG~IILvEGIaLAASGF~~~~~~~~~~~~ 167 (174)
|++|+++.|+=| ++-||-.+---|-.|.+
T Consensus 7 ~I~l~i~~li~G---~~~Gffiark~~~k~l~ 35 (72)
T PRK00523 7 ALGLGIPLLIVG---GIIGYFVSKKMFKKQIR 35 (72)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 444444444333 45577666555555554
No 8
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=32.80 E-value=81 Score=23.12 Aligned_cols=17 Identities=18% Similarity=0.380 Sum_probs=13.4
Q ss_pred hhHHHHHHHhhhHHHHH
Q 030654 129 ESAFLLAWLGVGGIILF 145 (174)
Q Consensus 129 EsAFLLAWLGLG~IILv 145 (174)
--+|.+.|.+.+++|+|
T Consensus 40 ~r~~~~~~~li~aLi~v 56 (64)
T COG4068 40 QRNFMILMFLILALILV 56 (64)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34688889999998776
No 9
>PHA03131 dUTPase; Provisional
Probab=30.54 E-value=92 Score=27.20 Aligned_cols=14 Identities=43% Similarity=0.764 Sum_probs=11.0
Q ss_pred CCCCCCCCCCCCCC
Q 030654 57 PKPTSPGQGFGSST 70 (174)
Q Consensus 57 ~~ptspG~GFGs~~ 70 (174)
+++...+.|||||.
T Consensus 272 ~~~~r~~~g~gssg 285 (286)
T PHA03131 272 SDPSRGTKGFGSSG 285 (286)
T ss_pred CCcccccccCCCCC
Confidence 46677889999984
No 10
>COG1585 Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=30.00 E-value=84 Score=24.62 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=19.3
Q ss_pred hHHHHHHHhhhHHHHHhhhHHhhcc-chhhHHHHHH
Q 030654 130 SAFLLAWLGVGGIILFQGIALAASV-KKLSFLHFLT 164 (174)
Q Consensus 130 sAFLLAWLGLG~IILvEGIaLAASG-F~~~~~~~~~ 164 (174)
..|.+.|+|+++++.. +++...+ +...+.-|+.
T Consensus 23 ~~~~ll~~g~aA~~vg--~~~l~~~~~~~q~v~f~~ 56 (140)
T COG1585 23 PGVFLLWLGLAALAVG--LALLLLLSWWLQLVLFAI 56 (140)
T ss_pred ccHHHHHHHHHHHHHH--HHHHccchHHHHHHHHHH
Confidence 4577888886666555 4444433 5555555543
No 11
>PF11241 DUF3043: Protein of unknown function (DUF3043); InterPro: IPR021403 Some members in this family of proteins with unknown function are annotated as membrane proteins. This cannot be confirmed.
Probab=27.40 E-value=59 Score=26.96 Aligned_cols=18 Identities=22% Similarity=0.355 Sum_probs=10.3
Q ss_pred HHHHhhhHHHHHhhhHHh
Q 030654 134 LAWLGVGGIILFQGIALA 151 (174)
Q Consensus 134 LAWLGLG~IILvEGIaLA 151 (174)
++|+++.+++++||+.|+
T Consensus 106 ~~~~~~~~~~iid~~~l~ 123 (170)
T PF11241_consen 106 LAMYVLLLLVIIDGVILG 123 (170)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 345555566666666654
No 12
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=25.42 E-value=77 Score=23.01 Aligned_cols=22 Identities=23% Similarity=0.287 Sum_probs=17.9
Q ss_pred HHHhhhhhhHHHHHHHhhhHHH
Q 030654 122 AKEMMKNESAFLLAWLGVGGII 143 (174)
Q Consensus 122 ~~e~~~nEsAFLLAWLGLG~II 143 (174)
-+|.++.|-|++..+.|+-++.
T Consensus 23 Lk~sGkee~A~~~tLaG~iiVL 44 (64)
T TIGR02848 23 LKQSGKEEQAQMVTLAGIVVVL 44 (64)
T ss_pred HHHcCcHHHHHHHHHHHHHHHH
Confidence 4678899999999998886654
No 13
>TIGR00945 tatC Twin arginine targeting (Tat) protein translocase TatC. This model represents the TatC translocase component of the Sec-independent protein translocation system. This system is responsible for translocation of folded proteins, often with bound cofactors across the periplasmic membrane. A related model (TIGR01912) represents the archaeal clade of this family. TatC is often found in a gene cluster with the two other components of the system, TatA/E (TIGR01411) and TatB (TIGR01410). A model also exists for the Twin-arginine signal sequence (TIGR01409).
Probab=23.35 E-value=1.3e+02 Score=24.43 Aligned_cols=41 Identities=27% Similarity=0.284 Sum_probs=34.6
Q ss_pred hhhhhHHHHHHHhhhHHHHHhhhHHhhccchhhHHHHHHHH
Q 030654 126 MKNESAFLLAWLGVGGIILFQGIALAASVKKLSFLHFLTYV 166 (174)
Q Consensus 126 ~~nEsAFLLAWLGLG~IILvEGIaLAASGF~~~~~~~~~~~ 166 (174)
-++|..+++.++..+.+.++=|+++|=--..|..+||+...
T Consensus 89 y~~Er~~~~~~~~~~~~lF~~G~~f~y~~vlP~~~~F~~~~ 129 (215)
T TIGR00945 89 YEHERRLLLPLLLGSILLFLAGLAFAYYVLFPAALNFLLTY 129 (215)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35788899999999999999999999888888888887543
No 14
>PF15555 DUF4658: Domain of unknown function (DUF4658)
Probab=21.82 E-value=49 Score=26.94 Aligned_cols=22 Identities=23% Similarity=0.323 Sum_probs=17.3
Q ss_pred CCCCCCCCCcccccCCCCcccc
Q 030654 92 QPKGRRERASVVRRNPVEKLSV 113 (174)
Q Consensus 92 K~K~~r~~a~VVRRaP~ekpsi 113 (174)
.+.+++-|+||.||+++|...-
T Consensus 6 reg~RkcPpSILrrs~pE~~~~ 27 (129)
T PF15555_consen 6 REGDRKCPPSILRRSRPERRPP 27 (129)
T ss_pred cCCCCCCChhhhccCCccCCCC
Confidence 4556778899999999987654
No 15
>PF11169 DUF2956: Protein of unknown function (DUF2956); InterPro: IPR021339 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=21.73 E-value=64 Score=25.33 Aligned_cols=12 Identities=33% Similarity=0.886 Sum_probs=6.8
Q ss_pred HHHHHhhhHHHH
Q 030654 133 LLAWLGVGGIIL 144 (174)
Q Consensus 133 LLAWLGLG~IIL 144 (174)
+|+|+|+++-++
T Consensus 91 ~lSW~gF~~Y~~ 102 (103)
T PF11169_consen 91 VLSWIGFIAYIF 102 (103)
T ss_pred HHHHHHHHHHHH
Confidence 456666665543
No 16
>COG4252 Predicted transmembrane sensor domain [Signal transduction mechanisms]
Probab=21.46 E-value=1.1e+02 Score=28.31 Aligned_cols=28 Identities=25% Similarity=0.584 Sum_probs=21.5
Q ss_pred hhhhHHHHHHHhhhHHHHHh---------hhHHhhcc
Q 030654 127 KNESAFLLAWLGVGGIILFQ---------GIALAASV 154 (174)
Q Consensus 127 ~nEsAFLLAWLGLG~IILvE---------GIaLAASG 154 (174)
--|-.++++|..+|++|.-. .++++.+|
T Consensus 323 ~~e~l~i~~w~~~g~~~aw~~r~~~~~~l~~~~~~~~ 359 (400)
T COG4252 323 GAELLWIFAWSLLGGLLAWRLRSPLRLLLAVGLALAG 359 (400)
T ss_pred HHHHHHHHHHHHHHHHHhccccCchhHHHHHHHHHHH
Confidence 45888999999999998765 45555566
No 17
>PF04093 MreD: rod shape-determining protein MreD; InterPro: IPR007227 The MreD (murein formation D) protein is involved in bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore cannot always be identified on the basis of sequence similarity.; GO: 0008360 regulation of cell shape, 0016021 integral to membrane
Probab=20.84 E-value=3.4e+02 Score=19.79 Aligned_cols=49 Identities=24% Similarity=0.261 Sum_probs=29.7
Q ss_pred HHHHhhhhhhHHHHHHHhhhHHHHHhhhHHhhccch-hhHHHHHHHHHHh
Q 030654 121 KAKEMMKNESAFLLAWLGVGGIILFQGIALAASVKK-LSFLHFLTYVKLW 169 (174)
Q Consensus 121 ~~~e~~~nEsAFLLAWLGLG~IILvEGIaLAASGF~-~~~~~~~~~~~~~ 169 (174)
+.+++-.+|+.++..|+...+..+...+....-+.. .++.||+.+.-+|
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p 137 (160)
T PF04093_consen 88 KLRKRFFKDNSFLPVWLVFFLFLLLVFLIYFLFGLTILSLLSFLIFRLLP 137 (160)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666788889988887776554444333333 3366666655444
No 18
>PLN03084 alpha/beta hydrolase fold protein; Provisional
Probab=20.83 E-value=84 Score=27.59 Aligned_cols=13 Identities=54% Similarity=0.927 Sum_probs=11.5
Q ss_pred CcccccCCCCCCC
Q 030654 1 MALQIHSPSSFTT 13 (174)
Q Consensus 1 malqihs~~~~t~ 13 (174)
||.|+|.|.+|-+
T Consensus 1 ~~~~~~~~~~~~~ 13 (383)
T PLN03084 1 MAVQAHNPNSFHS 13 (383)
T ss_pred CCccccCcccccc
Confidence 9999999999943
No 19
>PF13172 PepSY_TM_1: PepSY-associated TM helix
Probab=20.61 E-value=73 Score=19.15 Aligned_cols=20 Identities=30% Similarity=0.212 Sum_probs=12.2
Q ss_pred hHHHHHhhhHHhhccchhhH
Q 030654 140 GGIILFQGIALAASVKKLSF 159 (174)
Q Consensus 140 G~IILvEGIaLAASGF~~~~ 159 (174)
|.++.+=-+.++.||..++|
T Consensus 13 g~~~~~~ll~~~lTG~~l~~ 32 (34)
T PF13172_consen 13 GLIAAIFLLLLALTGALLNF 32 (34)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 34444445677888877654
No 20
>PF14333 DUF4389: Domain of unknown function (DUF4389)
Probab=20.47 E-value=1.8e+02 Score=20.69 Aligned_cols=29 Identities=24% Similarity=0.171 Sum_probs=23.8
Q ss_pred HHHHHhhhHHHHHhhhHHhhccchhhHHH
Q 030654 133 LLAWLGVGGIILFQGIALAASVKKLSFLH 161 (174)
Q Consensus 133 LLAWLGLG~IILvEGIaLAASGF~~~~~~ 161 (174)
-++..+++++.++|-+++-.+|-.|.-++
T Consensus 20 ~~~~~~~~~~~~~q~~~~L~tg~~p~~L~ 48 (80)
T PF14333_consen 20 SLASIVLGVLVLIQWFAILFTGRYPEPLF 48 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCCHhHH
Confidence 45677888999999999999998887654
Done!